Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP014472 Bacillus subtilis subsp. natto strain CGMCC 2108 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP014473 Bacillus subtilis subsp. natto strain CGMCC 2108 plasmid unnamed2, complete sequence 1 crisprs NA 0 1 0 0
NZ_CP014471 Bacillus subtilis subsp. natto strain CGMCC 2108, complete genome 2 crisprs csa3,cas3,DEDDh,WYL,DinG 0 1 11 0

Results visualization

1. NZ_CP014473
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014473_1 60627-60795 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP014473_1 1.1|60682|59|NZ_CP014473|CRISPRCasFinder 60682-60740 59 NZ_CP018185 Bacillus subtilis strain KH2 plasmid, complete sequence 60755-60813 0 1.0
NZ_CP014473_1 1.1|60682|59|NZ_CP014473|CRISPRCasFinder 60682-60740 59 NZ_CP017764 Bacillus subtilis strain 29R7-12 plasmid unnamed1, complete sequence 37952-38010 0 1.0
NZ_CP014473_1 1.1|60682|59|NZ_CP014473|CRISPRCasFinder 60682-60740 59 NZ_CP032868 Bacillus subtilis subsp. subtilis strain N4-2 plasmid unnamed1, complete sequence 33414-33472 0 1.0
NZ_CP014473_1 1.1|60682|59|NZ_CP014473|CRISPRCasFinder 60682-60740 59 NZ_CP032864 Bacillus subtilis subsp. subtilis strain N2-2 plasmid unnamed1, complete sequence 47417-47475 0 1.0
NZ_CP014473_1 1.1|60682|59|NZ_CP014473|CRISPRCasFinder 60682-60740 59 NZ_CP032866 Bacillus subtilis subsp. subtilis strain N3-1 plasmid unnamed1, complete sequence 31651-31709 0 1.0
NZ_CP014473_1 1.1|60682|59|NZ_CP014473|CRISPRCasFinder 60682-60740 59 NZ_CP021893 Bacillus subtilis subsp. subtilis strain SRCM100333 plasmid pBS333 sequence 5175-5233 0 1.0
NZ_CP014473_1 1.1|60682|59|NZ_CP014473|CRISPRCasFinder 60682-60740 59 NZ_CP021893 Bacillus subtilis subsp. subtilis strain SRCM100333 plasmid pBS333 sequence 71103-71161 0 1.0
NZ_CP014473_1 1.1|60682|59|NZ_CP014473|CRISPRCasFinder 60682-60740 59 NZ_CP041370 Bacillus sp. M4U3P1 plasmid unnamed1, complete sequence 57654-57712 0 1.0
NZ_CP014473_1 1.1|60682|59|NZ_CP014473|CRISPRCasFinder 60682-60740 59 NZ_CP020024 Bacillus subtilis strain ATCC 21228 plasmid pLDW-15, complete sequence 20251-20309 0 1.0
NZ_CP014473_1 1.1|60682|59|NZ_CP014473|CRISPRCasFinder 60682-60740 59 NZ_CP020024 Bacillus subtilis strain ATCC 21228 plasmid pLDW-15, complete sequence 84850-84908 0 1.0
NZ_CP014473_1 1.1|60682|59|NZ_CP014473|CRISPRCasFinder 60682-60740 59 NZ_CP032862 Bacillus subtilis subsp. subtilis strain N1-1 plasmid unnamed1, complete sequence 1870-1928 0 1.0
NZ_CP014473_1 1.1|60682|59|NZ_CP014473|CRISPRCasFinder 60682-60740 59 NC_015148 Bacillus subtilis subsp. natto plasmid pLS20 DNA, complete sequence, strain: IFO 3335 60682-60740 0 1.0
NZ_CP014473_1 1.1|60682|59|NZ_CP014473|CRISPRCasFinder 60682-60740 59 NZ_CP014473 Bacillus subtilis subsp. natto strain CGMCC 2108 plasmid unnamed2, complete sequence 60682-60740 0 1.0

1. spacer 1.1|60682|59|NZ_CP014473|CRISPRCasFinder matches to NZ_CP018185 (Bacillus subtilis strain KH2 plasmid, complete sequence) position: , mismatch: 0, identity: 1.0

tgcgacttgtcgtgatgtggcagctgaagaaagagatcgatgccaggcatccaggagcg	CRISPR spacer
tgcgacttgtcgtgatgtggcagctgaagaaagagatcgatgccaggcatccaggagcg	Protospacer
***********************************************************

2. spacer 1.1|60682|59|NZ_CP014473|CRISPRCasFinder matches to NZ_CP017764 (Bacillus subtilis strain 29R7-12 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tgcgacttgtcgtgatgtggcagctgaagaaagagatcgatgccaggcatccaggagcg	CRISPR spacer
tgcgacttgtcgtgatgtggcagctgaagaaagagatcgatgccaggcatccaggagcg	Protospacer
***********************************************************

3. spacer 1.1|60682|59|NZ_CP014473|CRISPRCasFinder matches to NZ_CP032868 (Bacillus subtilis subsp. subtilis strain N4-2 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tgcgacttgtcgtgatgtggcagctgaagaaagagatcgatgccaggcatccaggagcg	CRISPR spacer
tgcgacttgtcgtgatgtggcagctgaagaaagagatcgatgccaggcatccaggagcg	Protospacer
***********************************************************

4. spacer 1.1|60682|59|NZ_CP014473|CRISPRCasFinder matches to NZ_CP032864 (Bacillus subtilis subsp. subtilis strain N2-2 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tgcgacttgtcgtgatgtggcagctgaagaaagagatcgatgccaggcatccaggagcg	CRISPR spacer
tgcgacttgtcgtgatgtggcagctgaagaaagagatcgatgccaggcatccaggagcg	Protospacer
***********************************************************

5. spacer 1.1|60682|59|NZ_CP014473|CRISPRCasFinder matches to NZ_CP032866 (Bacillus subtilis subsp. subtilis strain N3-1 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tgcgacttgtcgtgatgtggcagctgaagaaagagatcgatgccaggcatccaggagcg	CRISPR spacer
tgcgacttgtcgtgatgtggcagctgaagaaagagatcgatgccaggcatccaggagcg	Protospacer
***********************************************************

6. spacer 1.1|60682|59|NZ_CP014473|CRISPRCasFinder matches to NZ_CP021893 (Bacillus subtilis subsp. subtilis strain SRCM100333 plasmid pBS333 sequence) position: , mismatch: 0, identity: 1.0

tgcgacttgtcgtgatgtggcagctgaagaaagagatcgatgccaggcatccaggagcg	CRISPR spacer
tgcgacttgtcgtgatgtggcagctgaagaaagagatcgatgccaggcatccaggagcg	Protospacer
***********************************************************

7. spacer 1.1|60682|59|NZ_CP014473|CRISPRCasFinder matches to NZ_CP021893 (Bacillus subtilis subsp. subtilis strain SRCM100333 plasmid pBS333 sequence) position: , mismatch: 0, identity: 1.0

tgcgacttgtcgtgatgtggcagctgaagaaagagatcgatgccaggcatccaggagcg	CRISPR spacer
tgcgacttgtcgtgatgtggcagctgaagaaagagatcgatgccaggcatccaggagcg	Protospacer
***********************************************************

8. spacer 1.1|60682|59|NZ_CP014473|CRISPRCasFinder matches to NZ_CP041370 (Bacillus sp. M4U3P1 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tgcgacttgtcgtgatgtggcagctgaagaaagagatcgatgccaggcatccaggagcg	CRISPR spacer
tgcgacttgtcgtgatgtggcagctgaagaaagagatcgatgccaggcatccaggagcg	Protospacer
***********************************************************

9. spacer 1.1|60682|59|NZ_CP014473|CRISPRCasFinder matches to NZ_CP020024 (Bacillus subtilis strain ATCC 21228 plasmid pLDW-15, complete sequence) position: , mismatch: 0, identity: 1.0

tgcgacttgtcgtgatgtggcagctgaagaaagagatcgatgccaggcatccaggagcg	CRISPR spacer
tgcgacttgtcgtgatgtggcagctgaagaaagagatcgatgccaggcatccaggagcg	Protospacer
***********************************************************

10. spacer 1.1|60682|59|NZ_CP014473|CRISPRCasFinder matches to NZ_CP020024 (Bacillus subtilis strain ATCC 21228 plasmid pLDW-15, complete sequence) position: , mismatch: 0, identity: 1.0

tgcgacttgtcgtgatgtggcagctgaagaaagagatcgatgccaggcatccaggagcg	CRISPR spacer
tgcgacttgtcgtgatgtggcagctgaagaaagagatcgatgccaggcatccaggagcg	Protospacer
***********************************************************

11. spacer 1.1|60682|59|NZ_CP014473|CRISPRCasFinder matches to NZ_CP032862 (Bacillus subtilis subsp. subtilis strain N1-1 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tgcgacttgtcgtgatgtggcagctgaagaaagagatcgatgccaggcatccaggagcg	CRISPR spacer
tgcgacttgtcgtgatgtggcagctgaagaaagagatcgatgccaggcatccaggagcg	Protospacer
***********************************************************

12. spacer 1.1|60682|59|NZ_CP014473|CRISPRCasFinder matches to NC_015148 (Bacillus subtilis subsp. natto plasmid pLS20 DNA, complete sequence, strain: IFO 3335) position: , mismatch: 0, identity: 1.0

tgcgacttgtcgtgatgtggcagctgaagaaagagatcgatgccaggcatccaggagcg	CRISPR spacer
tgcgacttgtcgtgatgtggcagctgaagaaagagatcgatgccaggcatccaggagcg	Protospacer
***********************************************************

13. spacer 1.1|60682|59|NZ_CP014473|CRISPRCasFinder matches to NZ_CP014473 (Bacillus subtilis subsp. natto strain CGMCC 2108 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

tgcgacttgtcgtgatgtggcagctgaagaaagagatcgatgccaggcatccaggagcg	CRISPR spacer
tgcgacttgtcgtgatgtggcagctgaagaaagagatcgatgccaggcatccaggagcg	Protospacer
***********************************************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP014471
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014471_1 917901-918006 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014471_2 2949228-2949335 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP014471_2 2.1|2949252|60|NZ_CP014471|CRISPRCasFinder 2949252-2949311 60 NZ_CP024037 Bacillus aryabhattai strain K13 plasmid unnamed2 10417-10476 7 0.883
NZ_CP014471_2 2.1|2949252|60|NZ_CP014471|CRISPRCasFinder 2949252-2949311 60 NZ_CP026740 Bacillus megaterium strain YC4-R4 plasmid unnamed4 70764-70823 7 0.883
NZ_CP014471_2 2.1|2949252|60|NZ_CP014471|CRISPRCasFinder 2949252-2949311 60 NC_017139 Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence 1318-1377 7 0.883
NZ_CP014471_2 2.1|2949252|60|NZ_CP014471|CRISPRCasFinder 2949252-2949311 60 NZ_CP010587 Bacillus megaterium Q3 plasmid p1, complete sequence 838-897 7 0.883
NZ_CP014471_2 2.1|2949252|60|NZ_CP014471|CRISPRCasFinder 2949252-2949311 60 NZ_CP023319 Bacillus megaterium strain A plasmid p2, complete sequence 75825-75884 7 0.883
NZ_CP014471_2 2.1|2949252|60|NZ_CP014471|CRISPRCasFinder 2949252-2949311 60 NC_020451 Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence 1960-2019 9 0.85
NZ_CP014471_2 2.1|2949252|60|NZ_CP014471|CRISPRCasFinder 2949252-2949311 60 NZ_CP015440 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence 64773-64832 12 0.8
NZ_CP014471_2 2.1|2949252|60|NZ_CP014471|CRISPRCasFinder 2949252-2949311 60 NZ_CP033045 Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence 483791-483850 13 0.783
NZ_CP014471_2 2.1|2949252|60|NZ_CP014471|CRISPRCasFinder 2949252-2949311 60 NZ_LR134399 Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence 57361-57420 14 0.767

1. spacer 2.1|2949252|60|NZ_CP014471|CRISPRCasFinder matches to NZ_CP024037 (Bacillus aryabhattai strain K13 plasmid unnamed2) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

2. spacer 2.1|2949252|60|NZ_CP014471|CRISPRCasFinder matches to NZ_CP026740 (Bacillus megaterium strain YC4-R4 plasmid unnamed4) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

3. spacer 2.1|2949252|60|NZ_CP014471|CRISPRCasFinder matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

4. spacer 2.1|2949252|60|NZ_CP014471|CRISPRCasFinder matches to NZ_CP010587 (Bacillus megaterium Q3 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

5. spacer 2.1|2949252|60|NZ_CP014471|CRISPRCasFinder matches to NZ_CP023319 (Bacillus megaterium strain A plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

6. spacer 2.1|2949252|60|NZ_CP014471|CRISPRCasFinder matches to NC_020451 (Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence) position: , mismatch: 9, identity: 0.85

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcattttagttatggcccggg	Protospacer
****************************************** ***   * ***  **. 

7. spacer 2.1|2949252|60|NZ_CP014471|CRISPRCasFinder matches to NZ_CP015440 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence) position: , mismatch: 12, identity: 0.8

cagcttggaaggctgaggttttaccactaaactacacccgca-------atttttatttg	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcataataatatataccattg	Protospacer
******************************************       ** * .  ***

8. spacer 2.1|2949252|60|NZ_CP014471|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 13, identity: 0.783

cagcttggaaggctgaggttttaccactaaactacacccgc--------aatttttattt	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatggttaaaagttttgcca	Protospacer
*****************************************        ** ****... 

9. spacer 2.1|2949252|60|NZ_CP014471|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 14, identity: 0.767

cagcttggaaggctgaggttttaccactaaactacacccgc---------aatttttatt	CRISPR spacer
cagcttggaaggctgtagttttaccactaaactacacccgcatagtaagtagttcttagt	Protospacer
*************** .************************         *.**.*** *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 672183 : 744533 60 Synechococcus_phage(15.79%) tRNA,transposase,coat NA
DBSCAN-SWA_2 1194949 : 1243735 57 Planktothrix_phage(22.22%) tRNA,transposase,coat NA
DBSCAN-SWA_3 1326674 : 1361554 44 uncultured_Caudovirales_phage(30.3%) terminase,plate,holin,transposase,portal NA
DBSCAN-SWA_4 1797939 : 1897574 110 Bacillus_phage(55.56%) integrase,head,holin,coat,terminase,tail,protease,plate,capsid,tRNA,transposase,portal attL 1799903:1799962|attR 1864681:1864846
DBSCAN-SWA_5 1966419 : 2016774 46 Bacillus_phage(55.0%) holin,transposase,integrase attL 1966326:1966385|attR 1992891:1994176
DBSCAN-SWA_6 2229215 : 2235310 8 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_7 2606737 : 2660206 56 uncultured_Mediterranean_phage(12.5%) protease,tRNA,coat NA
DBSCAN-SWA_8 3258204 : 3314026 69 Bacillus_phage(69.05%) head,terminase,tail,protease,capsid,holin,portal NA
DBSCAN-SWA_9 3388358 : 3424802 48 Bacillus_phage(34.62%) integrase,terminase,tail,plate,portal attL 3388167:3388220|attR 3424996:3425049
DBSCAN-SWA_10 3720539 : 3795878 74 Bacillus_phage(26.67%) protease,bacteriocin,tRNA,coat NA
DBSCAN-SWA_11 3964406 : 4062149 89 Bacillus_phage(23.81%) holin,protease,transposase,coat NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage