CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011540	Klebsiella aerogenes strain G7 plasmid pGPN1, complete sequence	0 crisprs	DEDDh	0	0	1	0
NZ_CP011539	Klebsiella aerogenes strain G7 chromosome, complete genome	4 crisprs	DEDDh,DinG,cas3,WYL,csa3	0	0	7	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

42678 : 70603

Salmonella_phage(26.67%)

integrase,transposase

attL 49318:49377|attR 74839:74990

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000543934.1\|42678_43689_+\|integrase	tyrosine-type recombinase/integrase	A0A0K0N6I5	Gordonia_phage	3.1e-07	31.9
WP_000997323.1\|43693_44563_+	3'-5' exonuclease	A0A1S6L012	Salmonella_phage	3.5e-23	35.1
WP_000139718.1\|44559_45042_+	hypothetical protein	NA	NA	NA	NA
WP_001166628.1\|45031_45487_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_001294656.1\|45558_45924_+	mercuric ion transporter MerT	NA	NA	NA	NA
WP_000732275.1\|45939_46215_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_000522996.1\|46242_46668_+	organomercurial transporter MerC	NA	NA	NA	NA
WP_000209296.1\|46706_48392_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.8e-39	29.1
WP_001277466.1\|48409_48775_+	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_001087807.1\|48771_49008_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_000993245.1\|49073_49286_+	DUF3330 domain-containing protein	NA	NA	NA	NA
49318:49377	attL	NA	NA	NA	NA
WP_001389365.1\|49523_50288_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_000376623.1\|50645_51146_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000259031.1\|51273_52113_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000679427.1\|52106_52454_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_001206316.1\|52617_53409_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
WP_061811564.1\|53501_53975_-	trimethoprim-resistant dihydrofolate reductase DfrA	G3MBI7	Bacillus_virus	1.3e-19	32.1
WP_000845048.1\|54131_55145_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_000454193.1\|55347_55698_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000147567.1\|55823_56384_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
WP_001138064.1\|56386_59353_+\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.6
WP_000427614.1\|59431_60436_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_001217881.1\|62839_63397_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.0e-93	98.4
WP_015365452.1\|63579_64440_+	class A extended-spectrum beta-lactamase TEM-24	Q1MVP3	Enterobacteria_phage	1.2e-158	98.3
WP_001162012.1\|65054_65612_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	5.8e-48	81.3
WP_000845054.1\|65917_66931_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	6.1e-72	45.5
WP_032488579.1\|67110_67665_+	aminoglycoside N-acetyltransferase AAC(6')-Ib3	NA	NA	NA	NA
WP_000679427.1\|67833_68181_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|68174_69014_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000376623.1\|69141_69642_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000983249.1\|69817_70603_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	3.3e-33	35.0
74839:74990	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP011539

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011539_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011539_1

2459847-2459961

Orphan

Consensus_repeat	Method
AACCGCTCAAACCCGTAGCCCTGCCAGGCGTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011539_1

>merge|NZ_CP011539|1|2459847-2459961|CRISPRCasFinder
AACCGCTCAAACCCGTAGCCCTGCCAGGCGTAGTGCAGGCTGGGATAACCCGGATAGCGGCTTACGCCTTATCCGGGCTACCAACCGCTCAAACCTGTAGCCCTGCCAGGCGTAG

>NZ_CP011539|1|1|2459847-2459961|CRISPRCasFinder
AACCGCTCAAACCCGTAGCCCTGCCAGGCGTAG	TGCAGGCTGGGATAACCCGGATAGCGGCTTACGCCTTATCCGGGCTACC
AACCGCTCAAACCTGTAGCCCTGCCAGGCGTAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011539.1\|WP_015367559.1\|2467687_2468443_+\|molybdopterin-synthase-adenylyltransferase-MoeB	unknown	unknown	gnl\|CDD\|180204
NZ_CP011539.1\|WP_015367562.1\|2472084_2472900_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|272905
NZ_CP011539.1\|WP_015367543.1\|2451534_2452767_-\|multidrug-efflux-MFS-transporter-KdeA	unknown	unknown	gnl\|CDD\|185300
NZ_CP011539.1\|WP_032705602.1\|2454537_2455740_-\|serine-type-D-Ala-D-Ala-carboxypeptidase	unknown	unknown	gnl\|CDD\|182189
NZ_CP011539.1\|WP_015367546.1\|2453750_2454509_+\|DNA-binding-transcriptional-repressor-DeoR	unknown	unknown	gnl\|CDD\|182644
NZ_CP011539.1\|WP_015367548.1\|2455996_2456623_+\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NZ_CP011539.1\|WP_015367550.1\|2457836_2458220_-\|biofilm-formation-regulator-BssR	unknown	unknown	gnl\|CDD\|183420
NZ_CP011539.1\|WP_015367553.1\|2460008_2460920_-\|glutathione-ABC-transporter-permease-GsiD	unknown	unknown	gnl\|CDD\|185040
NZ_CP011539.1\|WP_015367554.1\|2460921_2461842_-\|glutathione-ABC-transporter-permease-GsiC	unknown	unknown	gnl\|CDD\|185039
NZ_CP011539.1\|WP_015367557.1\|2465331_2466273_-\|beta-aspartyl-peptidase	unknown	unknown	gnl\|CDD\|182319
NZ_CP011539.1\|WP_015367541.1\|2449478_2450681_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340951
NZ_CP011539.1\|WP_015367556.1\|2463463_2465317_-\|glutathione-ABC-transporter-ATP-binding-protein-GsiA	unknown	unknown	gnl\|CDD\|182342
NZ_CP011539.1\|WP_015367545.1\|2453070_2453664_+\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|183335
NZ_CP011539.1\|WP_015367555.1\|2461888_2463430_-\|glutathione-ABC-transporter-substrate-binding-protein-GsiB	unknown	unknown	gnl\|CDD\|185311
NZ_CP011539.1\|WP_015367558.1\|2466452_2467688_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|182643
NZ_CP011539.1\|WP_015367549.1\|2456628_2457732_-\|PQQ-dependent-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|369642
NZ_CP011539.1\|WP_015367561.1\|2469501_2471934_+\|formate-C-acetyltransferase/glycerol-dehydratase-family-glycyl-radical-enzyme	unknown	unknown	gnl\|CDD\|273798
NZ_CP011539.1\|WP_015367542.1\|2450680_2451493_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223635
NZ_CP011539.1\|WP_015367560.1\|2468598_2469498_+\|glycyl-radical-enzyme-activating-protein	unknown	unknown	gnl\|CDD\|274163
NZ_CP011539.1\|WP_015367552.1\|2458477_2459803_+\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	unknown	unknown	gnl\|CDD\|237838

Protein	Function_ID	Function_description	E-value
NZ_CP011539.1\|WP_015367559.1\|2467687_2468443_+\|molybdopterin-synthase-adenylyltransferase-MoeB	gnl\|CDD\|180204	PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional.	0
NZ_CP011539.1\|WP_015367562.1\|2472084_2472900_+\|HAD-family-hydrolase	gnl\|CDD\|272905	TIGR00099, Uncharacterized_protein_MCAP_0867, Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. This subfamily of sequences falls within the Class-IIB subfamily (TIGR01484) of the Haloacid Dehalogenase superfamily of aspartate-nucleophile hydrolases. The use of the name "Cof" as an identifier here is arbitrary and refers to the E. coli Cof protein. This subfamily is notable for the large number of recent paralogs in many species. Listeria, for instance, has 12, Clostridium, Lactococcus and Streptococcus pneumoniae have 8 each, Enterococcus and Salmonella have 7 each, and Bacillus subtilus, Mycoplasma, Staphylococcus and E. coli have 6 each. This high degree of gene duplication is limited to the gamma proteobacteria and low-GC gram positive lineages. The profusion of genes in this subfamily is not coupled with a high degree of divergence, so it is impossible to determine an accurate phylogeny at the equivalog level. Considering the relationship of this subfamily to the other known members of the HAD-IIB subfamily (TIGR01484), sucrose and trehalose phosphatases and phosphomannomutase, it seems a reasonable hypothesis that these enzymes act on phosphorylated sugars. Possibly the diversification of genes in this subfamily represents the diverse sugars and polysaccharides that various bacteria find in their biological niches. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences. [Unknown function, Enzymes of unknown specificity].	3.62148e-67
NZ_CP011539.1\|WP_015367543.1\|2451534_2452767_-\|multidrug-efflux-MFS-transporter-KdeA	gnl\|CDD\|185300	PRK15402, PRK15402, MdfA family multidrug efflux MFS transporter.	0
NZ_CP011539.1\|WP_032705602.1\|2454537_2455740_-\|serine-type-D-Ala-D-Ala-carboxypeptidase	gnl\|CDD\|182189	PRK10001, PRK10001, serine-type D-Ala-D-Ala carboxypeptidase.	0
NZ_CP011539.1\|WP_015367546.1\|2453750_2454509_+\|DNA-binding-transcriptional-repressor-DeoR	gnl\|CDD\|182644	PRK10681, PRK10681, DNA-binding transcriptional repressor DeoR; Provisional.	0
NZ_CP011539.1\|WP_015367548.1\|2455996_2456623_+\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	1.19123e-50
NZ_CP011539.1\|WP_015367550.1\|2457836_2458220_-\|biofilm-formation-regulator-BssR	gnl\|CDD\|183420	PRK12302, bssR, biofilm formation regulator BssR.	9.21693e-68
NZ_CP011539.1\|WP_015367553.1\|2460008_2460920_-\|glutathione-ABC-transporter-permease-GsiD	gnl\|CDD\|185040	PRK15082, PRK15082, glutathione ABC transporter permease GsiD; Provisional.	0
NZ_CP011539.1\|WP_015367554.1\|2460921_2461842_-\|glutathione-ABC-transporter-permease-GsiC	gnl\|CDD\|185039	PRK15081, PRK15081, glutathione ABC transporter permease GsiC; Provisional.	0
NZ_CP011539.1\|WP_015367557.1\|2465331_2466273_-\|beta-aspartyl-peptidase	gnl\|CDD\|182319	PRK10226, PRK10226, isoaspartyl peptidase; Provisional.	0
NZ_CP011539.1\|WP_015367541.1\|2449478_2450681_+\|MFS-transporter	gnl\|CDD\|340951	cd17393, MFS_MosC_like, Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of transporters. The gene encoding Sinorhizobium meliloti membrane protein MosC is part of the mos locus, which encodes the biosynthesis of the rhizopine 3-O-methyl-scyllo-inosamine. MosC belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.11417e-111
NZ_CP011539.1\|WP_015367556.1\|2463463_2465317_-\|glutathione-ABC-transporter-ATP-binding-protein-GsiA	gnl\|CDD\|182342	PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional.	0
NZ_CP011539.1\|WP_015367545.1\|2453070_2453664_+\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|183335	PRK11837, PRK11837, undecaprenyl pyrophosphate phosphatase; Provisional.	4.18189e-119
NZ_CP011539.1\|WP_015367555.1\|2461888_2463430_-\|glutathione-ABC-transporter-substrate-binding-protein-GsiB	gnl\|CDD\|185311	PRK15413, PRK15413, glutathione ABC transporter substrate-binding protein GsiB; Provisional.	0
NZ_CP011539.1\|WP_015367558.1\|2466452_2467688_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|182643	PRK10680, PRK10680, molybdopterin biosynthesis protein MoeA; Provisional.	0
NZ_CP011539.1\|WP_015367549.1\|2456628_2457732_-\|PQQ-dependent-sugar-dehydrogenase	gnl\|CDD\|369642	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase. Members of this family are glucose/sorbosone dehydrogenases that possess a beta-propeller fold.	0
NZ_CP011539.1\|WP_015367561.1\|2469501_2471934_+\|formate-C-acetyltransferase/glycerol-dehydratase-family-glycyl-radical-enzyme	gnl\|CDD\|273798	TIGR01774, Putative_formate_acetyltransferase_3, glycyl radical enzyme, PFL2/glycerol dehydratase family. This family previously was designated pyruvate formate-lyase, but it now appears that members include the B12-independent glycerol dehydratase. Therefore, the functional definition of the family is being broadened. This family includes the PflF and PflD proteins of E. coli, described as isoforms of pyruvate-formate lyase found in a limited number additional species. PFL catalyzes the reaction pyruvate + CoA -> acetyl-CoA + formate, which is a step in the fermentation of glucose.	0
NZ_CP011539.1\|WP_015367542.1\|2450680_2451493_+\|HAD-family-hydrolase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	1.51107e-66
NZ_CP011539.1\|WP_015367560.1\|2468598_2469498_+\|glycyl-radical-enzyme-activating-protein	gnl\|CDD\|274163	TIGR02494, PFLE_PFLC, glycyl-radical enzyme activating protein. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA), benzylsuccinate synthase (BssD), gycerol dehydratase (DhaB2) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines.	5.87925e-138
NZ_CP011539.1\|WP_015367552.1\|2458477_2459803_+\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	gnl\|CDD\|237838	PRK14862, rimO, 30S ribosomal protein S12 methylthiotransferase RimO.	0

>NZ_CP011539.1|WP_015367552.1|2458477_2459803_+|30S-ribosomal-protein-S12-methylthiotransferase-RimO
MSNVTHQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDNADMVIVNTCGFIDSAVQESLEAIGEALKENGKVIVTGCLGAKEDQIREVHPKVLEITGPHSYEQVLEHVHHYAPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEVLAEAKRLADAGVKELLVISQDTSAYGVDVKHRTGFHNGMPVKTSMVSLCEELAKLGIWVRLHYVYPYPHVDDVIPLMAEGKILPYLDIPLQHASPRILKLMKRPGSADRQLARIKQWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGATANELADQVPEVVKEERWNRFMQLQQQISAERLQEKVGREIMVLVDEVDEEGAIGRSMADAPEIDGAVYLNGETNVKPGDVLRVKVEHADEYDLWGSRV
>NZ_CP011539.1|WP_015367550.1|2457836_2458220_-|biofilm-formation-regulator-BssR
MSVDRRYTNLLNKLINANIDLAAYLQLRKAKGYMSVSENDHLRDNLFELCHELRVHAPRLQHAIAPEEMEAFRLAGESVASAAVCLMSGHHDCPAYIAVNVEKLERCLSGLTMNIHILNNSAPMTHA
>NZ_CP011539.1|WP_015367549.1|2456628_2457732_-|PQQ-dependent-sugar-dehydrogenase
MRRYLKITLMTVLLPMAAMAAPRVEVLQDNLDHPWSLAFLPDNEGVLITLRGGELKRWQLDQGLSAPIRGVPKVWANGQGGLLDVVLAPDFAQSRRVWLSYAEAGDDGKAGTAVGYGRLSADLQNLEDFKTVFRQQPKLSTGNHFGGRMVFDGKGHLFIGLGENNQRPTAQDLDKLQGKVVRLTDQGTIPKDNPFVGRTGIRPEIWAYGVRNPQGMAMNPWSDTLWLNEHGPRGGDEINIPQAGKNYGWPLATHGINYSGQPIPEAKGKSAPNTEAPLHVWPASPALSGMAFYNASTFPQWRHKLFIGALKDESLIVLSVDGNTLSEETRLLKDRGKRIRDVRVGPDGYLYLLTDEPDGELLKVSPE
>NZ_CP011539.1|WP_015367548.1|2455996_2456623_+|glutathione-S-transferase-family-protein
MITLWGRNNSTNVKKVRWVLAELDLPYQQILAGLEYGLNHDPEYLAMNPNGLVPLLKDDANGLVLWESNAIIRYLAAQYGQNRLWVESPVQRAQGEKWMDWANATLSPAHRPVLMGLVRTPPDQRDPAAIEAGIHACEGLFAMLDDELAKHAWLSGDEFGLGDVAVAPFVYNLLSILDSWQPRPHLQRWYQQIQQRQAFRDVVMIPVT
>NZ_CP011539.1|WP_032705602.1|2454537_2455740_-|serine-type-D-Ala-D-Ala-carboxypeptidase
MTHDAFSLRGLAAGCALLLLVAPAVQAADQLPDAPSIDARAWILMDYASGKVLSEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLTDTVTVGRDAWATGNPALRGSSVMFLKPGMQVSVEDLNKGVIIQSGNDASIAIADYVAGSQDSFVNLMNGYAQKIGLTNTTFKTVHGLDAPGQFSTARDMALLTKAMIHDVPEEYAVHKEKEFTFNKIRQPNRNRLLWSTNLNADGVKTGTTAGAGYNLVSSATQGDMRLIAVVLGTKTDRIRFNESEKLLTWGFRFYETVTPIKPDATFISQRVWFGDSNEVKLGAGEAGSVTIPRGQLKNLKASYNLTEPQLTAPLAKGQVVGTIDFKLNDKTIEQRPLIVMEDVKEGGFFSRMVDFVLMKLHGWFGSWFS
>NZ_CP011539.1|WP_015367546.1|2453750_2454509_+|DNA-binding-transcriptional-repressor-DeoR
METRRDERINQLIQALKRSDKLHLKEAASLLGVSEMTIRRDLNGHSGPVVLLGGYIVLEPRSATHYLLSDQKTRLVDEKRRAARHAAGLLEAHQMAFFDCGTTTPWIIDAIDNELPFTGVCYSLNTFLALQEKPLCRAILCGGEFHASNAIFLPLSLQDTLSHLSPDIAYYSAAGIDCEQGATCYNLEELPVKHWAMNNARYHVLVVDHSKFGKVRPARMGELSRFDVIASDVRPDDDLLALAKEKQISLLY
>NZ_CP011539.1|WP_015367545.1|2453070_2453664_+|undecaprenyl-diphosphate-phosphatase
MLENINYALFALINATPASSWWAIEVATFIAKDLIIIVPLLVVALWLWGPNQRQLVFKVMLALALSLSISWVIGHLFPHDRPFVDGVGYNFLHHAADDSFPSDHGTVIFTFALAFLFWHRVWSGALLLVIASAIAWSRVYLGVHWPLDMLGGLLAGMCGCLGSQLLWQSGGHGLYQRLQRLYRLCFSLPIRKGWVRG
>NZ_CP011539.1|WP_015367543.1|2451534_2452767_-|multidrug-efflux-MFS-transporter-KdeA
MQNYSLSGKRLGRQALLFPLCLVLYEFSTYIGNDMIQPGMLAVVQEFQVGNEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLTGVVWFIVTCLATLLAQTIEQFTLLRFLQGISLCFIGAVGYAAIQESFEEAVCIKITALMANVALIAPLLGPLVGAAWVHMLPWEMMFVLFAVLAAISFVGLQRAMPETATRMGEKLSVKELGRDYRLVLKNLRFVAGALATGFVSLPLLAWIAQSPVIIISGEQATSYEYGMLQVPIFGALIAGNLVLARLTSRRSVRSLIIMGGWPIMFGLLLSAAATVVSSHAYLWMTAGLSFYAFGIGLANAGLVRLTLFASEMSKGTVSAAMGMLQMLIFTVGIELSKHAYELGGNGLFSLFNLLGGVLWLGLIIYFLKDKSVGSSQQA
>NZ_CP011539.1|WP_015367542.1|2450680_2451493_+|HAD-family-hydrolase
MSIKLIAVDMDGTFLSDAKTYNRPRFLAQYQRMREQGIRFVVASGNQYYQLISFFPELVDEIAFVAENGGWVVSGKEDIFNCQLPTTHFNAVVDHLQTLPHIEIIACGKRSAYTLNSYNDELKAVAAKYYHRLELVDDFNHLDDAILKFGLNVPDHLIPEIQPKLHAALGDMVTAVATGYGSIDLIIPGVHKANGLRILQERWGIDNHEVVAFGDSGNDIEMLQHAGFGFAMANAKAEVKAVASHHAPHNNEEGVLHIIDKVLNREAPFA
>NZ_CP011539.1|WP_015367541.1|2449478_2450681_+|MFS-transporter
MTAQTSRKALQLRLWALFMFFFIPGLLMASWATRTPAIRDLLTLSTAEMGMVLFGLSIGSMSGILCSAWLVKRFGTRKVIRTTMLCAVAGMLVLSLALWLASAPLFAFGLAIFGASFGSAEVAINVEGAAVEREMNKTVLPMMHGFYSFGTLVGAGIGMAVTGFGLPAAPHILIAALVAIAPILIAIRAIPDGTGKNAAESAHSEAKGLPVWRDVQLLLIGVIVLAMAFAEGSANDWLPLLMVDGHGFSPTSGSLIYAGFTLGMTLGRFTGGWFIDRYSRVTVVRASAVMGALGIGLIIFVDSTWVAGVSVLLWGLGASLGFPLTISAASDTGPDAPKRVSVVAITGYLAFLVGPPLLGFLGEHFGLRSAMMVVLGLVMVAALVARAVAKPQPEPVMENS
>NZ_CP011539.1|WP_015367553.1|2460008_2460920_-|glutathione-ABC-transporter-permease-GsiD
MRLLNWRREAVINAMPGVKPGQIRTPWHEFWRRFRRQPVAMAAGLFVLLLIIVAIIAPWIAPYDAENYFDYDRLNEGPSMVHWFGVDSLGRDIFSRVLVGAQISLAAGVLAVLIGALIGTVLGLLAGYYEGWWDRITMRICDVLFAFPGILLAIAVVAVMGSGMANVIIAVAIFSIPAFARLVRGNTLVLKQQTFIESARSIGASDTTILFNHILPGTVSSIVVYFTMRIGVSIISAASLSFLGLGAQPPTPEWGAMLNEARADMVMAPHVALFPAIAIFLTVLAFNLLGDGLRDALDPKIKG
>NZ_CP011539.1|WP_015367554.1|2460921_2461842_-|glutathione-ABC-transporter-permease-GsiC
MLNYVLKRLLGLIPTLFIVAVLVFLFVHMLPGDPARLIAGPEADAQVVAMVRQQLGLDQPLHVQFWHYITNVLQGDFGISMASRRPVTSEIASRFMPTLWLTLASMSWAVLFGMAAGIAAAVWRNRWPDRLGMALAVTGISFPAFALGMLLMQVFSVELGWLPTVGADSWRHYILPSLTLGAAVASVMARFTRASFVDVLHEDYMRTARAKGVSETLVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVMYAAINPAIRYK
>NZ_CP011539.1|WP_015367555.1|2461888_2463430_-|glutathione-ABC-transporter-substrate-binding-protein-GsiB
MTQPVTRKWLLALGIASALAATPAFAAKDVVVAVGSNFTTLDPYDANDTLSQAVAKSFYQGLFGLDKEMKLQNVLAESYTVSADGLVYTIKLHSGVKFQDGTDFNAEAVKANLDRASNPDNHLKRYNLYKNIASTEAVDPTTVKITLKQPFSAFINILAHPATAMISPAALKKYGKEIGFHPVGTGPYKLDTWNQTDFVKVSKFDGYWQPGLPKLDSITWRPVVDNNTRAAMLQTGEAQFAFPIPYEQAPLLAKNSKLELVASPSIMQRYISMNVTQKPFDNPKVREAINYAINRQALVKVAFAGYATPATGVVPPSIAYAQTYSAWPYDPAKARQLLKEAGFPNGFSTTLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVTAMDAGQRAAQVEGKGQKESGVRMFYTGWSASTGEADWALSPLFASQNWPPTLFNTAFYSNPQVDKDLSEALKTTDAQQKTTLYKDAQDIIWKESPWVPLVVEKLVSAHSKNLTGFYIQPDTGFSFEQADLTQ
>NZ_CP011539.1|WP_015367556.1|2463463_2465317_-|glutathione-ABC-transporter-ATP-binding-protein-GsiA
MPQSHEIDEDDVLVVRDLNVAFSQQRQRVSAVRNLSFSLRRGETLAIVGESGSGKSVTALALMRLLDGAVSEVSSEALLLRRRNRQVIDINAQTAGQMRQVRGADVAMIFQEPMTSLNPVFTIGEQIAESIRLHQGLRHDEALREAKKMLERVRIPEAEAMLSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIAALQKEMAMGVMFITHDMGVVAEIADRVLVMYRGEAVESGRVEDIFRAPQHPYTRALLAAVPKLGSMRGSDLPRRFPLLNDGVTQQPEQNTVVAGKPILQVRDLVARFPIRGGILNRVTREVHAVEKVSFDLWPGETLSLVGESGCGKSTTGRALLRLVEAQGGSITFNGQRIDALSGGKLQTLRRDIQFIFQDPYASLDPRQTVGYSIMEPLRVHGLLEGDAARERVAWLLQRVGLEAEHAWRYPHEFSGGQRQRICIARALALNPKVVIADESVSALDVSIRAQIINLLLDLQREMGIAFLFISHDMAVVERISHRVAVMYRGRIVEIGPRRAVFENPQHPYTRKLMAAVPVADPAHRQPQRVLLSDELPGNIYKPGEEIDSAPLQLVAPGHYVAREPADVLSR
>NZ_CP011539.1|WP_015367557.1|2465331_2466273_-|beta-aspartyl-peptidase
MGKAVIAIHGGAGAISRAQMTQAREREYVAALSAIVDSGQKMLAAGASALDAVTEAVRLLEECPLFNAGIGSVFTHDQTHELDACVMDGYSLQAGSVAGVKHLRNPVLAARLVLEESPHVLLIGEGAEKFAASRGMALVENELFSTTERLLQLQQAKEGGEIILDHHAAPLDERHKMGTVGAVALDLAGNLAAATSTGGMTNKLPGRVGDSPVPGAGCYANNASVAVSCTGTGEVFMRTLAAYDISALMEYGNLSLFEACERVVQEKLPALGGSGGLIAIDREGNVVLPFNSEGMYRAWCYAGDTPTIGIYRE
>NZ_CP011539.1|WP_015367558.1|2466452_2467688_+|molybdopterin-molybdotransferase-MoeA
MDFTAGLMPLDTALTQMLDRISPLQATETLPLLQAFSRVTAHDVVSPLDVPGFDNSAMDGYAVRLADLTDGAALPVAGKAFAGQPFHDAWPAGTCIRIMTGAPVPEGCDAVVMQEETEQTDAGVRFIAPVKAGQNIRRRGEDIANGAVVFPAGTRLTVAELPVLASLGIADVEVVRKVRVAVFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIPDDPAKLRDAFIAADQQADVVISSGGVSVGEADYTKTILEELGEIGFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSGNRGQTQPMRLRVRAASRLKKSPGRLDFQRGVLQRNPEGELVVSTTGHQGSHIFSSFSLGNCFIVLERERGNVEAGEWVEVEPFNHLFGGL
>NZ_CP011539.1|WP_015367559.1|2467687_2468443_+|molybdopterin-synthase-adenylyltransferase-MoeB
MAVELSDEEMLRYNRQIVLRGFDFDGQERLKAARVLVVGLGGLGCAAAQYLAAAGVGQLTLLDFDTVSLSNLQRQTLHSDATIGQPKVDSARDALARINPHVRLVTIDAMLDDAALATQIADHHLVLDCTDNVAVRNQLNAGCFQHKTPLVSGAAIRMEGQISVFTYQDGEPCYRCLSRLFGENALTCVEAGVMAPLVGTIGSLQAMEAIKLLTGYGTPAWGKIVMYDAMTCQFREMKLMRHPQCEVCGSR
>NZ_CP011539.1|WP_015367560.1|2468598_2469498_+|glycyl-radical-enzyme-activating-protein
MIFNIQRYSTHDGPGIRTVVFLKGCSLGCRWCQNPESRARSEDLLYDARLCLDGCELCQQAAPEVITRTLDGLIIHRQNVNDAHIAALRHCCPTTALTVCGEEKSVADIMATVLRDKPFYDRSGGGITLSGGEPFMNPTLAQALFEASHQAGIHTAVETCLHVPWKYIEPSLPFVDLFLADLKHVDEAVFQQWTDGSARRVLDNLQRLAQAGKKIIIRVPLIQGFNASEADITAITDFAADRLQVSEIHFLPYHTLGMNKYQLLSQPYTAPDKPLAAPELLAFAQQYAQSKGLTATLRG
>NZ_CP011539.1|WP_015367561.1|2469501_2471934_+|formate-C-acetyltransferase/glycerol-dehydratase-family-glycyl-radical-enzyme
MTTLKLDTLSARIQAHKMALVHIVKPPVCTERAQHYTAAYQQHLDKPIPVRRALALAHHLAERTIWIKHDELIVGNQASEVRAAPIFPEYTVSWIEKEIDDLADRPGAGFSVSEANKRVLHEVCPWWRGQTVQDRCYGMFTDEQKALLATGIIKAEGNMTSGDAHLAVNYPLLLEKGLDGMRAKVAERRSRINLTVLEDLHGEQFLKAIDIVLAAVSEHCKRFATLARDMAAQEPRELRRNELLAIAENCEIIAHQPPKTFWQALQLCYFIQLILQIESNGHSVSFGRMDQYLYPYYRRDVELQQSLDREQAIELLHCCWLKLLEVNKIRSGSHSKASAGSPLYQNVTIGGQNLVDGQPQDAVNPLSYAILESCGRLRSTQPNLSVRYHAGMSNDFLDACVQVIRCGFGMPAFNNDEIVIPEFIKLGIEPQDAYDYAAIGCIETAVGGKWGYRCTGMSFINFARVMLATLEGGRDATSGQVFLAQQHALSKGNFANFDQVLEDWDTQIRYYTRKSIEIEYVVDTMLEENVHDILCSALVDDCIERAKSIKQGGAKYDWVSGLQVGIANLGNSLAAVKKLVFDQGVIGQQELAKALAEDFAGLTHEQLRQRLINGAPKYGNDDDSVDILLARAYQTYIDELKQYHNPRYGRGPIGGNYYAGTSSISANVPFGAQTMATPDGRKAHAPLAEGASPASGTDHLGPTAVISSVGKLPTGAILGGVLLNQKLNPSTLENESDKQKLMVLLRTFFEVHKGWHIQYNIVSRETLLEAKKHPDQYRDLVVRVAGYSAFFTALSPDTQDDIIARTEHTL
>NZ_CP011539.1|WP_015367562.1|2472084_2472900_+|HAD-family-hydrolase
MTVKVIVTDMDGTFLNDAKQYDRPRFLAQFAQLKQQGIEFVVASGNQYYQLISFFPEIREQISFVAENGALVYEHGKQVFHGELTRHESQVVIGELLKDPQLNFVACGLQSAYVSDKAPDAFVELMSKHYHRLQRVSDYHRIDDTLFKFSLNLPDSDIPQLIDKLHVSLDGIMKPVTSGFGFVDLIIPGLHKANGISRLLKRWNLSPQQCVAIGDSGNDAEMLKLVKYAFAMANAADSIKAIAGFTTDDNNHDGALKVIQAVLDKTSPFND

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Crispr_ID: NZ_CP011539_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011539_2

3507829-3507913

Orphan

Consensus_repeat	Method
TAAAAGGGTGATGCCACTGGCATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011539_2

>merge|NZ_CP011539|2|3507829-3507913|CRISPRCasFinder
TAAAAGGGTGATGCCACTGGCATCACATAAACACCTATCAATCCGGCGCCAATCAATAGATAAAAGGGTGATGCCACTGGCATCA

>NZ_CP011539|2|2|3507829-3507913|CRISPRCasFinder
TAAAAGGGTGATGCCACTGGCATCA	CATAAACACCTATCAATCCGGCGCCAATCAATAGA
TAAAAGGGTGATGCCACTGGCATCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011539.1\|WP_001230900.1\|3511391_3512429_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011539.1\|WP_000863683.1\|3505034_3505706_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011539.1\|WP_015368502.1\|3508021_3510334_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|273608
NZ_CP011539.1\|WP_001314389.1\|3507165_3507471_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376540
NZ_CP011539.1\|WP_015368503.1\|3510440_3511034_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011539.1\|WP_001255484.1\|3516097_3516748_+\|TIGR03759-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|274770
NZ_CP011539.1\|WP_015368501.1\|3503835_3504969_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	unknown
NZ_CP011539.1\|WP_000785012.1\|3499209_3500094_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP011539.1\|WP_000919735.1\|3515482_3516091_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|269894
NZ_CP011539.1\|WP_000981784.1\|3513429_3513924_+\|DUF3158-family-protein	unknown	unknown	gnl\|CDD\|314329
NZ_CP011539.1\|WP_001060567.1\|3501809_3503294_+\|chromosome-partitioning-protein-ParB	unknown	unknown	gnl\|CDD\|213858
NZ_CP011539.1\|WP_000823396.1\|3500090_3500465_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011539.1\|WP_000938043.1\|3503277_3503817_+\|DUF2857-domain-containing-protein	unknown	unknown	gnl\|CDD\|378591
NZ_CP011539.1\|WP_001287071.1\|3512741_3513440_+\|TIGR03761-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|274771
NZ_CP011539.1\|WP_045368387.1\|3498307_3498865_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011539.1\|WP_001149395.1\|3513972_3514122_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011539.1\|WP_000124689.1\|3515025_3515490_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|163460
NZ_CP011539.1\|WP_000044289.1\|3500457_3501813_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|273206
NZ_CP011539.1\|WP_001291904.1\|3514488_3514905_+\|DUF3577-domain-containing-protein	unknown	unknown	gnl\|CDD\|371899
NZ_CP011539.1\|WP_001314390.1\|3505832_3507161_-\|type-II-toxin-antitoxin-system-HipA-family-toxin	unknown	unknown	gnl\|CDD\|341493

Protein	Function_ID	Function_description	E-value
NZ_CP011539.1\|WP_015368502.1\|3508021_3510334_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|273608	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	5.41153e-65
NZ_CP011539.1\|WP_001314389.1\|3507165_3507471_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|376540	pfam01381, HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within Neisseria gonorrhoeae NGO_0477, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family.	1.22362e-10
NZ_CP011539.1\|WP_000938043.1\|3503277_3503817_+\|DUF2857-domain-containing-protein	gnl\|CDD\|378591	pfam11198, DUF2857, Protein of unknown function (DUF2857). This is a bacterial family of uncharacterized proteins.	1.35928e-72
NZ_CP011539.1\|WP_001255484.1\|3516097_3516748_+\|TIGR03759-family-integrating-conjugative-element-protein	gnl\|CDD\|274770	TIGR03759, conj_TIGR03759, integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown. [Mobile and extrachromosomal element functions, Plasmid functions].	1.23379e-84
NZ_CP011539.1\|WP_000785012.1\|3499209_3500094_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.58689e-34
NZ_CP011539.1\|WP_000919735.1\|3515482_3516091_+\|hypothetical-protein	gnl\|CDD\|269894	cd14447, SPX, Domain found in Syg1, Pho81, XPR1, and related proteins. This region has been named the SPX domain after (Syg1, Pho81 and XPR1). This domain is found at the amino terminus of a variety of proteins. In the yeast protein Syg1, the N-terminus directly binds to the G-protein beta subunit and inhibits transduction of the mating pheromone signal. Similarly, the N-terminus of the human XPR1 protein binds directly to the beta subunit of the G-protein heterotrimer leading to increased production of cAMP. These findings suggest that members of this family are involved in G-protein associated signal transduction. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors Pho81 from Saccharomyces cerevisiae and NUC-2 from Neurospora crassa, are also members of this family. The SPX domain of S. cerevisiae low-affinity phosphate transporters Pho87 and Pho90 auto-regulates uptake and prevents efflux. This SPX dependent inhibition is mediated by the physical interaction with Spl2. NUC-2 contains several ankyrin repeats. Several members of this family are annotated as XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with xenotropic and polytropic murine leukaemia viruses (MLV). Infection by these retroviruses can inhibit XPR1-mediated cAMP signaling and result in cell toxicity and death. The similarity between Syg1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, S. cerevisiae, and many other diverse organisms.	0.000250427
NZ_CP011539.1\|WP_001060567.1\|3501809_3503294_+\|chromosome-partitioning-protein-ParB	gnl\|CDD\|213858	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.	5.33269e-132
NZ_CP011539.1\|WP_000981784.1\|3513429_3513924_+\|DUF3158-family-protein	gnl\|CDD\|314329	pfam11358, DUF3158, Protein of unknown function (DUF3158). Some members in this family of proteins are annotated as integrase regulator R however this cannot be confirmed. This family of proteins with unknown function appear to be restricted to Proteobacteria.	1.49578e-46
NZ_CP011539.1\|WP_001287071.1\|3512741_3513440_+\|TIGR03761-family-integrating-conjugative-element-protein	gnl\|CDD\|274771	TIGR03761, ICE_PFL4669, integrating conjugative element protein, PFL_4669 family. Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.	9.48612e-92
NZ_CP011539.1\|WP_000124689.1\|3515025_3515490_+\|hypothetical-protein	gnl\|CDD\|163460	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family. This model describes the conserved N-terminal region of a variable length protein family associated with laterally transfered regions flanked by markers of conjugative plasmid integration and/or transposition. Most members of the family have the lipoprotein signal peptide motif. A member of the family from a pathogenicity island in Salmonella enterica serovar Dublin strain was designated PilL for nomenclature consistency with a neighboring gene for the pilin structural protein PilS. However, the species distribution of this protein family tracks much better with markers of conjugal transfer than with markers of PilS-like pilin structure. [Mobile and extrachromosomal element functions, Plasmid functions].	1.39266e-40
NZ_CP011539.1\|WP_000044289.1\|3500457_3501813_+\|replicative-DNA-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP011539.1\|WP_001291904.1\|3514488_3514905_+\|DUF3577-domain-containing-protein	gnl\|CDD\|371899	pfam12101, DUF3577, Protein of unknown function (DUF3577). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.	1.68895e-67
NZ_CP011539.1\|WP_001314390.1\|3505832_3507161_-\|type-II-toxin-antitoxin-system-HipA-family-toxin	gnl\|CDD\|341493	cd17808, HipA_Ec_like, type II toxin-antitoxin sytem toxin HipA from Escherichia coli and similar proteins. This family contains type II toxin-antitoxin (TA) system HipA family toxins similar to Escherichia coli HipA, a serine/threonine-protein kinase that phosphorylates Glu-tRNA-ligase (GltX), preventing it from being charged, leading to an increase in uncharged tRNA(Glu). This induces amino acid starvation and the stringent response via RelA/SpoT and increased (p)ppGpp levels, which inhibits replication, transcription, translation and cell wall synthesis, reducing growth and leading to persistence and multidrug resistance. HipA is the toxin component of the HipA-HipB TA module that is a major factor in persistence and bioflim formation; its toxic effect is neutralized by its cognate antitoxin HipB. HipA, with HipB, acts as a a corepressor for transcription of the hipBA promoter. In the Escherichia coli HipAB:DNA promoter complex, HipA forms a dimer and each HipA monomer interacts with a HipB homodimer which binds DNA. The HipAB component of the complex is composed of two HipA and four HipB subunits.	0

>NZ_CP011539.1|WP_001314389.1|3507165_3507471_-|helix-turn-helix-transcriptional-regulator
MNTVYPLKTLNQIRPLLIGFRKANGLTQKEVSERLGVTQQTYARLEANPASASMERLFRVFTVLGVEMVLSSGPQILSSMSSSTMDESEQQKDSPARREKW
>NZ_CP011539.1|WP_001314390.1|3505832_3507161_-|type-II-toxin-antitoxin-system-HipA-family-toxin
MRRTQQRLAIWMNGIRVGFWEKARGEDSLQYLPEWVVDEQGRPLSLSLPFTPGNQLWRGNVVRDYFDNLLPDSEGIRRRLAVRYQSESLEPFDLLAELGRDCVGAIQLLDVDEEPTDLFSVNYRPLSEADIATTLRNTTAASLPGRQDETDDLRLSIAGAQEKTALLWHEEQWCLPEGNTPTTHIFKLPLGLVGNMQADMSTSVENEWLCSLLLEHYGIPVAKTQIAQFEDQKALVVERFDRRWSGDRQWIIRLPQEDMCQALGVSPLRKYQSDGGPGISDIMDILSHSDQAEQDKEQFFRAQIIFWLLAATDGHAKNFSIAIEPQSHYHLTPLYDVLSAWPVIGHGNNQISWQRCKLAMAVRGSSNYYHIYRIQRRHWINHGELTGLGRRQVESMMDDIISSTPEVIERVSMLLPESFPPELAECIFEGMRQQCRRLAGRE
>NZ_CP011539.1|WP_000863683.1|3505034_3505706_-|hypothetical-protein
MAFEWKEIITPVATLTAVWLGARFTLRNELRKKTLEIQSEKLELLFTECSNVLKDINRVSLAVLHTLDDFIPTTESEGSVPEQEIQDALRAYREKGVVIDFDAITACQHKLEFHRPKEYQAWIVALIPLLGTLTKMTPYNNMNPIAEADNRKWSHQELTLYRQELDEKRNALPILRKRLTSAMASDYRQLGLSSEPANFWVYVERWKRVVNAFFHKPPTSPLT
>NZ_CP011539.1|WP_015368501.1|3503835_3504969_+|helix-turn-helix-domain-containing-protein
MTPYIQALIAMTGDKLQQRMQKDPTSASDSLLFMGNQHDTVPRRLLQDPLLSPKDKFAWQVIRMQAQDNGGAVFPSYSELQVQLSNRPQDEKASRSTVSRALLMLRLTRWLSLCHKARDRVSGRILGNIYALHDEPLTVLDAVRFDASYLHLLEQCSRHENKAIRATAQGILYDIRQDTSLRYLSSRIELLEERARWQQRQSPEETKPETSGLNTVPGKISPGTETRLSLKPGPDGVVSNQDQAPVRTVPTDLCNSTTARANDSPPYWPPEIPLTHPEKQLVLQAMQNLSSPLRQNVLDDAAQRVARGGIQNPLAYLLATLRKAQGGEFNQYRRGKATVPEFVRPVVSEPEIPVEPRKKRDISKLVAEIRAQCLGSG
>NZ_CP011539.1|WP_000938043.1|3503277_3503817_+|DUF2857-domain-containing-protein
MLPTINQAVLSQVIQALKDGNVRYCEALGFDREELNELNALTFEELMHMGNTSAQFLKITINHDVLRKMLVQVRQEQKFQQLVGQAVQLGGSIALISHYFGISTAEISARRRLMGIHVRQGRNQVPGEEEEAALWNRWQEIKVDNIDSIPALEAMMLLAQERSLSLTVVWNLIRQWEKS
>NZ_CP011539.1|WP_001060567.1|3501809_3503294_+|chromosome-partitioning-protein-ParB
MNNKLTSTELQSRLLQGNFDRGRSLDERFADPLTETSMIVTLEQLRPYDLNPRLMRNPSYDDIKESIRRRGLDTPPPITRRPDQEWFIIANGGNTRLSILNELWRETHDERFWRIQCLYKPWAGTSDQPMLGELRCLIGHLAENDMHGKLSFIERALGINKARELYQQVEECQLSQRELAEHLKSDGYPINQSHISRMEQALEYLLPCIPEVLYAGMGRSQVEKLLSLRAASLHLWQRHAAEDVGSFDDLFSSALSLFNDQPEDFAIERVQDELLGLMSQELNVDYNLLLLDVDPSEQKRQAVLGPTPEPPPYIPPEKPEPRPIARRRKPETEEDKVGAPAPLPEPEEAPSLLCEGTEPVTDIWRIPQLWDTTESLRSVSDRLAWDLAEHYAIDDRIISDTDVNGIGFQVMPFASGHPMFTRPQSRACWALLAALNEIPLTEDLASALTPTLFFQHDADGFFFSDEFLIKAFRLIRIVRRIKEFQQEAQHAADD
>NZ_CP011539.1|WP_000044289.1|3500457_3501813_+|replicative-DNA-helicase
MSKRKRPQPPHSVEAEQSVLGGLMLDNDRWDDVATQISAQDFFISAHRTIYSHMQTLVEQGNPIDLITLSESLEQQEQLEQVGGFAYLAELSKNTPSAANIIPYAQYIASYGELRQLLLLGNELSDMAGQPRSNVADVLNFAEQKLFAIAQSYQEGGLTDINACFDNVLAGIAQRYEAERGSLSGTPSGLEQLDTLTCGFQPADLIIAAARPSVGKTAFALTLCVNALMLRPAQPVQIYSMEMSAEQLLLRLVSLIGRVSQTRLRSGDLSDNDWQQIGISANVLMTEWKDRLLLDDSGILTPSLLRSRARRSLRQHGIPSLIVVDYLQLMRCGGAENRNQEISTISRSLKALAKELNCPVLALSQLNRALESRLNKRPCNADLRDSGSIEQDADVILFLYRDELYDPNTLDRGIAEVIVSKQRNGPIGTVRTRFISDQTRFESLSQQGVES
>NZ_CP011539.1|WP_000823396.1|3500090_3500465_+|hypothetical-protein
MKRKIWRAFCSYYAQHPFEKDDEVIVFFEAADREEARETLPVLMSLLWHIPPEKVDCYNLEDENELRDTSGSLTSPRDWPLFEIGWSNNKPLYSSDLPLLLLPPHQQTRLWEAFLACQEGNRDE
>NZ_CP011539.1|WP_000785012.1|3499209_3500094_+|ParA-family-protein
MKNADAIDLPTLIAAILSTKGGVAKTTDTANLGGYLADQGLKVLMIDADIRQPTLSSYYPLDNEAPGGIYELIAQNELDPAIIISHTSIPGLDIIISNDPRGELMSLLQAAPDGVIRLRHLVRQITGYDVILIDTIGARTIALEMVLLASDLIISPVLPEMLSAREFLRGTLQMYRDLQPFTRYGIPLPPLKAVINKLDHTNDAREIHHNLLQVLQHKQKEQELLVPTEILMTPVYASVAYRRAASLGMPVHRLDAARPKGRTTPCAAETMQMLAKELFPQFLALPHQQMEGIA
>NZ_CP011539.1|WP_045368387.1|3498307_3498865_-|hypothetical-protein
MPVNERINATSGTRIKPGGTRLITTGEIGLSRALYNCGIRYNTVWIHRESYLPFNLQPIDIAMSPNGEMWFREDTYSHDFSMDILEKKHRFMHEMMHVWQAQRGMFVRTRGLFSHFADYSYSLDKADICHYGLEQQASLVSDYWLLLNYGFKGNTNLIKYRDYDPDESAHSLIEKYKSVMKGFPV
>NZ_CP011539.1|WP_015368502.1|3508021_3510334_+|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MKIAPYLITLTLPFISLSAKADYHTQINAGNTVSGDIVDGSKGNQHVYGTLTNSTITGPYAYSYVGDGGQTNHITVTDHGELFLESGGSAYDTQITDDGDLQVNGYAENTYVDSGGQVYVNAGNNGIEDPEQGGQIVNTTVGAGGQVVNRYGIDTNTVVEAGGELDTGWNYPYEIRNTAISRNAVIQNGGIQQVSNGGTSEGSKVNDGGTLIVTGTWHYNVVTDSQPSAWYSGTADDSAVYGTMQNQGGLDENTTVQSGGQYTLSGYGLSHQLTVAQGGSAQINNGVLDSFWLYGMMNVSSQATLTGTGTVGSSGELVLNEGAKTSGLTLALDGVLSLQNSSDAGPHNYQIAGLEMDGGTVLFDPASFATLNMKTLSGNGNFWMNTDIATQQGDMINVSGEANGDFGIWINDTGDPPADPQSLQVVQTGGGDAQFTLLNPNQQVDIGTWEYGLTPDGQGNWSLTPQATPTPSTEAVLAMANVTPTIFQAEASALQTRLDVTRSRPHQGELWMQALSNRFDVNRTGNAAYRQRLGGLMMGYDRSLPRQTGLLTLGIAGGYSRSDLDLINDSDGSVDSYSAALYASYYDQSRFWLDGMLKGNLFNQHLNVRMSSGGYADGSYTIPGLGSSLVAGYDARFANTKLSPFVGFTGFISQSDNYWLSNGMQAHPGTAKSALGQVGFRLRQNITTHHGMQFIPWLKVALEQEFVHNNLVRVNDDNFNNDIAGTRGSYQAGISAALTQHTHIYASINYEKGDGMESPWTGNIGFNYSF
>NZ_CP011539.1|WP_015368503.1|3510440_3511034_+|hypothetical-protein
MSLLESFGKALIILLEAFLGKRKGQEEAHNKFLNEYTKENCNHRLVEYWFCQFTGWRYAKYRDICFIMTSSDPSKILYMAKGINYIARTVEFIDSGECKLSDRYKEKKKHTFLFLFISFLIIFFILIVWMISSVMSLITHYHDVTLMAINISSIIAGAIFIMCFAFFIHAITMEFFAFEKAEHFVKSYNAERTPSGH
>NZ_CP011539.1|WP_001230900.1|3511391_3512429_-|hypothetical-protein
MRKNPTNAFRESYLEAQKYKKEKNRKLGVKVFHALLKSFVFFAMVIYLTQSLVKIGTPIVLTEFLSENKTPFIILPIILVFFAGVIGVISSRKIKAIDYEPDSHSSLKIRISALQKAIDACREQQGRLHEDVTNYLDGDSRNELYETIYSSLKNEASGSLLCELEEKVKSNTTLIDVKDYFLDMQTRLNQRASSLNTVSFINLFIGISIATIGISILLYFVFNTDYVNTDKTVLLIEMMSKLGVSFGIELLSFFFLNLYRKNLQEIKYIQNELTNIEAKKISLTMAHDLPTDLKFKIIKSISMTERNFILEKGQTTSDLETLKYEKMDIAALLKASPELIKALKH
>NZ_CP011539.1|WP_001287071.1|3512741_3513440_+|TIGR03761-family-integrating-conjugative-element-protein
MSDYTFNMGPLRSAIHIQLHTHNATRLWTGRRATESGPAPIIGMPRFIEILNQMRIAAEHNDPYADLWMLRMEEKLVQSRKLMQVMLDQAKAMFSELPEGIDIENCFNVQPARFPLFINAPLAYQGVYLLTDFDQLARQLLLASHIAVISRREMHNRLNNGATVIRSAFGLAQKYHGSGLTRQDFIDDTPQARAAVERLGPLPEAILSGKLRSSFSSPLPGKTDNPGAADDE
>NZ_CP011539.1|WP_000981784.1|3513429_3513924_+|DUF3158-family-protein
MMNNSITSYQSLADEDYKMLAYVSSLKGLLKPFKSKGELELLESNARSVREMMEPLMQRLIQSARRYPVRQLPLIFTIGPAPSGANFLRWRNQQNNKSGTPAFCNLIGNPKIPQRARDALLEIERDRIVFNMQMSVLTFIIRQARECQEKMEQAEMLYQGQQNS
>NZ_CP011539.1|WP_001149395.1|3513972_3514122_-|hypothetical-protein
MQAVRADSETAVAWLSTRNDTEQERKGCFARRERHEREQAKQTALLGMA
>NZ_CP011539.1|WP_001291904.1|3514488_3514905_+|DUF3577-domain-containing-protein
MSEKTYFNLYTSGLGYVNRVRTVTPKRGEPFLCCDIAALSGAADDVDYVRFDCKVTGSEARKLIARCEQAVNEKRKVLIHFRLGDLYVDMFTYSKGERKGETGVSLKARLLYIGLVKIDGEVVWQAGNQETEAEDDAA
>NZ_CP011539.1|WP_000124689.1|3515025_3515490_+|hypothetical-protein
MARTTGWVITLLMLGGCTAPQQPVAPAPKPATPPAPEVVRYDRYLLINTHPDEAQRNPLHQIVNINLPLNLKLTVGDAFTWLLKQSGYSLCVDDHPTQFLAGKPLPLSQYRLGPMRLEDALKTLAGPGWLMQTDVLNREVCFHLNTPGTGDHHA
>NZ_CP011539.1|WP_000919735.1|3515482_3516091_+|hypothetical-protein
MLKRLAYLTTGAALLLLAAAVFWCFNCLNTLTLTQQQTQRQITQWRDQPQPDSDYHELKVAVKNIADRTEALARQLNDAASVQAERLHPITEQLRVLEGQIQTLSASYQHLQQQTATCSRAKAKRPVPSPLWAAKAPFSLISSEFRAGRQFAVIAPSGYRSLSQLQLVAPGDSVQGWQLLQLDGSHASFRKGGQRLTLNTGG
>NZ_CP011539.1|WP_001255484.1|3516097_3516748_+|TIGR03759-family-integrating-conjugative-element-protein
MRRYLPLCLLLLPLFASPQQTRIEEQAITHTQAQQWGLTDSEWQRYQQLHQGERGIWSPGLDPLTTLGVEANNDAERQRFAELLARKEHQRVEKELAFQRAYDQAWKRLYPTLTPIRSVVQPRLALFVSEKCPACETLAQKLINDDRPLDIWLVNSRNDDASLQRWAQRQHIDMRKVERGQITLNHDNGRWQRLGGGKLPLLLEQQGEQWRPVSAP

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Crispr_ID: NZ_CP011539_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011539_3

4957891-4958005

Orphan

Consensus_repeat	Method
GCGGCTACGCCTTATCCGGGCTACCCAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011539_3

>merge|NZ_CP011539|3|4957891-4958005|CRISPRCasFinder
GCGGCTACGCCTTATCCGGGCTACCCAACGATGCGTACCCGTAGCCCGGCTGAGCGCAGCGCGAGCCGGGGAAACCTTCCCGGATGGCGGTTACGCCTTATCCGGGCTACCCAAC

>NZ_CP011539|3|3|4957891-4958005|CRISPRCasFinder
GCGGCTACGCCTTATCCGGGCTACCCAAC	GATGCGTACCCGTAGCCCGGCTGAGCGCAGCGCGAGCCGGGGAAACCTTCCCGGATG
GCGGTTACGCCTTATCCGGGCTACCCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011539.1\|WP_015369777.1\|4948390_4949707_+\|Xaa-Pro-aminopeptidase	unknown	unknown	gnl\|CDD\|182804
NZ_CP011539.1\|WP_015369778.1\|4949703_4950882_+\|2-octaprenyl-6-methoxyphenyl-hydroxylase	unknown	unknown	gnl\|CDD\|235584
NZ_CP011539.1\|WP_015703432.1\|4947786_4948365_+\|YecA-family-protein	unknown	unknown	gnl\|CDD\|234976
NZ_CP011539.1\|WP_015369787.1\|4961678_4963112_-\|6-phospho-beta-glucosidase-BglA	unknown	unknown	gnl\|CDD\|184975
NZ_CP011539.1\|WP_015369775.1\|4946369_4946966_-\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|182385
NZ_CP011539.1\|WP_015369785.1\|4959135_4961145_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|226685
NZ_CP011539.1\|WP_015369780.1\|4953636_4954026_+\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NZ_CP011539.1\|WP_015369781.1\|4954156_4957030_+\|aminomethyl-transferring-glycine-dehydrogenase	unknown	unknown	gnl\|CDD\|235432
NZ_CP011539.1\|WP_004205298.1\|4947290_4947620_-\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|182874
NZ_CP011539.1\|WP_015369790.1\|4965244_4966228_-\|tRNA-modifying-protein-YgfZ	unknown	unknown	gnl\|CDD\|236567
NZ_CP011539.1\|WP_015369783.1\|4958029_4958533_-\|protein-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|239309
NZ_CP011539.1\|WP_015369784.1\|4958522_4959134_-\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239321
NZ_CP011539.1\|WP_015369788.1\|4963231_4963960_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP011539.1\|WP_015369782.1\|4957090_4957834_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|182051
NZ_CP011539.1\|WP_015369786.1\|4961194_4961554_-\|copper-resistance-protein	unknown	unknown	unknown
NZ_CP011539.1\|WP_008806429.1\|4964486_4965146_+\|hemolysin-III-family-protein	unknown	unknown	gnl\|CDD\|185044
NZ_CP011539.1\|WP_002916480.1\|4952517_4953612_+\|glycine-cleavage-system-aminomethyltransferase-GcvT	unknown	unknown	gnl\|CDD\|234742
NZ_CP011539.1\|WP_015369791.1\|4966451_4966718_+\|FAD-assembly-factor-SdhE	unknown	unknown	gnl\|CDD\|182803
NZ_CP011539.1\|WP_015369779.1\|4950892_4952095_+\|FAD-dependent-2-octaprenylphenol-hydroxylase	unknown	unknown	gnl\|CDD\|236139
NZ_CP011539.1\|WP_015369789.1\|4964010_4964322_+\|ASCH-domain-containing-protein	unknown	unknown	gnl\|CDD\|179908

Protein	Function_ID	Function_description	E-value
NZ_CP011539.1\|WP_015369777.1\|4948390_4949707_+\|Xaa-Pro-aminopeptidase	gnl\|CDD\|182804	PRK10879, PRK10879, proline aminopeptidase P II; Provisional.	0
NZ_CP011539.1\|WP_015369778.1\|4949703_4950882_+\|2-octaprenyl-6-methoxyphenyl-hydroxylase	gnl\|CDD\|235584	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated.	0
NZ_CP011539.1\|WP_015703432.1\|4947786_4948365_+\|YecA-family-protein	gnl\|CDD\|234976	PRK01736, PRK01736, hypothetical protein; Reviewed.	1.57873e-121
NZ_CP011539.1\|WP_015369787.1\|4961678_4963112_-\|6-phospho-beta-glucosidase-BglA	gnl\|CDD\|184975	PRK15014, PRK15014, 6-phospho-beta-glucosidase BglA; Provisional.	0
NZ_CP011539.1\|WP_015369775.1\|4946369_4946966_-\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|182385	PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional.	3.09604e-121
NZ_CP011539.1\|WP_015369785.1\|4959135_4961145_-\|thioredoxin-family-protein	gnl\|CDD\|226685	COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion].	1.86087e-101
NZ_CP011539.1\|WP_015369780.1\|4953636_4954026_+\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	9.15876e-73
NZ_CP011539.1\|WP_015369781.1\|4954156_4957030_+\|aminomethyl-transferring-glycine-dehydrogenase	gnl\|CDD\|235432	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase.	0
NZ_CP011539.1\|WP_004205298.1\|4947290_4947620_-\|cell-division-protein-ZapA	gnl\|CDD\|182874	PRK10972, PRK10972, cell division protein ZapA.	3.38717e-64
NZ_CP011539.1\|WP_015369790.1\|4965244_4966228_-\|tRNA-modifying-protein-YgfZ	gnl\|CDD\|236567	PRK09559, PRK09559, putative global regulator; Reviewed.	0
NZ_CP011539.1\|WP_015369783.1\|4958029_4958533_-\|protein-disulfide-oxidoreductase	gnl\|CDD\|239309	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.	3.12599e-46
NZ_CP011539.1\|WP_015369784.1\|4958522_4959134_-\|thioredoxin-domain-containing-protein	gnl\|CDD\|239321	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.	3.91961e-54
NZ_CP011539.1\|WP_015369788.1\|4963231_4963960_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.55426e-57
NZ_CP011539.1\|WP_015369782.1\|4957090_4957834_+\|SDR-family-oxidoreductase	gnl\|CDD\|182051	PRK09730, PRK09730, SDR family oxidoreductase.	8.9853e-169
NZ_CP011539.1\|WP_008806429.1\|4964486_4965146_+\|hemolysin-III-family-protein	gnl\|CDD\|185044	PRK15087, PRK15087, hemolysin; Provisional.	9.93513e-138
NZ_CP011539.1\|WP_002916480.1\|4952517_4953612_+\|glycine-cleavage-system-aminomethyltransferase-GcvT	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	0
NZ_CP011539.1\|WP_015369791.1\|4966451_4966718_+\|FAD-assembly-factor-SdhE	gnl\|CDD\|182803	PRK10878, PRK10878, FAD assembly factor SdhE.	2.85923e-47
NZ_CP011539.1\|WP_015369779.1\|4950892_4952095_+\|FAD-dependent-2-octaprenylphenol-hydroxylase	gnl\|CDD\|236139	PRK08013, PRK08013, oxidoreductase; Provisional.	0
NZ_CP011539.1\|WP_015369789.1\|4964010_4964322_+\|ASCH-domain-containing-protein	gnl\|CDD\|179908	PRK04980, PRK04980, hypothetical protein; Provisional.	4.15277e-63

>NZ_CP011539.1|WP_015369782.1|4957090_4957834_+|SDR-family-oxidoreductase
MAIALISGASRGIGRATALLLAQEGYTVAVNYHHNIKAATEVVNTIVESGGKATALRADISDEAQVMAMFEAIDRMGEPLMALVNNAGILFTQCTVESLSAERINRVLATNVTGYFLCCREAVKRMSHRHGGKGGAIVNVSSAASRLGAPGEYVDYAASKGAVDTLTTGLALEVAAQGIRVNGVRPGLIYTEMHASGGEPGRVDRVKNSLPMQRGGQPEEVAQTIAWLLSDKASYVTGSFLELAGGK
>NZ_CP011539.1|WP_015369781.1|4954156_4957030_+|aminomethyl-transferring-glycine-dehydrogenase
MTQTLSQLENRDAFIERHIGSDAQQQQEMLKTVGADSLNALIGQIVPQDIQLATPPQVGDATTEFAALAELKAIAGRNKRFKSYIGMGYTAVQLPPVIQRNMLENPGWYTAYTPYQPEVSQGRLESLLNFQQVTLDLTGLDIASASLLDEATAAAEAMAMAKRVSKLKNANRFFVAADVHPQTLDVVRTRAETFGFDVIVDDADKVLDHQDVFGVLLQQVGTTGEIHDYSKLIAELKARKVIVSVAADFMALVLLTAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFAAKDEFKRSMPGRIIGVSKDAAGNTALRMAMQTREQHIRREKANSNICTSQVLLANIASLYAVFHGPAGLKRIAGRIHRLTDILADGLQKKGLKLRHAHYFDTLCVEVADKAAVLARAEALQINLRSDIHGAVGITLDEATTREDVLNLFRAIVGDDHGLDIDTLDKDVALDSRSIPAAMLRDDAILTHPVFNRYHSETEMMRYMHALERKDLALNQAMIPLGSCTMKLNAAAEMIPITWPEFAELHPFCPVEQAEGYHQMIAQLSDWLVKLTGYDAVCMQPNSGAQGEYAGLLAIRHYHESRNEGHRDICLIPSSAHGTNPASAQMAGMQVVVVACDKNGNIDLADLREKAEQAGANLSCIMVTYPSTHGVYEETIREVCEIVHQFGGQVYLDGANMNAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSVVQIEGMLTRQGAVSAAPFGSASILPISWMYIRMMGAEGLKQASQNAILNANYIATRLKDAYPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDFGFHAPTMSFPVAGTLMVEPTESESKVELDRFIDAMLAIRAEIDRVKAGEWPLEDNPLVNAPHTQGELVSEWNHPYSRELAVFPAGLHNKYWPTVKRLDDVYGDRNLFCSCVPMSEYQ
>NZ_CP011539.1|WP_015369780.1|4953636_4954026_+|glycine-cleavage-system-protein-GcvH
MSNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVEAGADCAVAESVKAASDIYAPISGEIVAVNEELNDSPELVNSDPYADGWIFKIKASDEAQVAALLDAAAYEALLEDE
>NZ_CP011539.1|WP_002916480.1|4952517_4953612_+|glycine-cleavage-system-aminomethyltransferase-GcvT
MAQQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHAVRGDAGMFDVSHMTIVDFHGSRIREFLRYLLANDVAKLTTPGKALYTGMLTASAGVIDDLIVYFLSEDYFRLVVNSATREKDLAWISEQAEPYGLEITVRDDLSLIAVQGPQAKAKAATLFTDAQRQAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIAMPNEQAADFWRGLLDAGVKPCGLGARDTLRLEAGMNLYGQEMDEGVSPLAANMGWTIAWEPADRNFIGREALEMQREKGTEQLVGLVMTEKGVLRGGLPVRFTDSDGNQKEGIITSGTFSPTLGYSIALARVPAGIGDTAVVQIRNREMPVKVTKPGFVRNGKAIV
>NZ_CP011539.1|WP_015369779.1|4950892_4952095_+|FAD-dependent-2-octaprenylphenol-hydroxylase
MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEQAAPQPLDADAPPALRVSAINAASEKLLDKLGVWSEIIAQRASCYHGMEVWDKDSFGRISFDDQSMGFSHLGHIIENAVVHHALWQKAQRCADVTLLAPAQLQQVAWGENEAFLSLQDGSMLTARLVVGADGANSWLRNKADIPLTFWDYRHHALVATIRTTEPHQAVARQAFHGEGILAFLPLSDPHLCSIVWSLSPEEAQRMQQADAAAFNQALNIAFDNRLGLCQLESDRQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIDELKRLHAQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFREMFSGSHPAKKLLRDMGLKLADSLPGVKPQLIRQAMGLNDLPAWLR
>NZ_CP011539.1|WP_015369778.1|4949703_4950882_+|2-octaprenyl-6-methoxyphenyl-hydroxylase
MSVLIVGGGMTGATLALAISRMTGGALPVHLIEAQDPASSRHPGFDDRAIALAAGTCQQLARIGIWQNLAKRATPIQRVHVSDRGHAGFVNLAAADYGLSALGQVVELHDVGQRLFSLLREAPGVTLHCPAKVEAVNRSQDSVSLTLDSGETINGKLLVAADGSRSSLGARCGISWQQQPYEQLAIIANVSTALPHEGRAFERFTEHGPLAMLPMSQGRCSLVWCHPQSRRDEVLSWSDERFCQQLQQAFGWRLGRITHAGKRSVYPLALTTAIRSVSHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAELLADAHGLGEDVGNYSLLCRYQARRADDKAATIGVTDGLVHLFANRWAPLVAGRNVGLMAMELFTPARDALAQRTLGWVPR
>NZ_CP011539.1|WP_015369777.1|4948390_4949707_+|Xaa-Pro-aminopeptidase
MTQQEFLSRRQALLAQMQPGSAALIFAAPEAVRSADSEYPYRQNSDFWYFTGFNEPEALLVLIKSDETHNHSVLFNRVRDLTAEIWFGRRLGQDAAPGKLGVDRALAFSEINQQLYQLLNGLDAIYFAQGEYAYADEIVFNALEKLRKGSRQNLQAPNSVIDWRPVVHEMRLFKSAEELEVMRRAGEISALAHTRAMEKCRPGMFEYQLEGEILHEFNRHGARFPSYNTIVGGGENACILHYTENESELRDGDLVLIDAGCEYRGYAGDITRTFPVNGKFTKPQREIYDIVLESLETALELYRPGTSIYEVNQEVVRIMITGLVRLGILKGEIDELIANNAHRPYFMHGLSHWLGLDVHDVGNYDTDRSRVLEPGMVLTVEPGLYIATDADVPAQYRGIGIRIEDDIVIIEDGNENLTASVVKKADEIEALMAAARQS
>NZ_CP011539.1|WP_015703432.1|4947786_4948365_+|YecA-family-protein
MSIQNEMPGYNDVDQLLNQQGVGLTPAEMHGLISGILCGGNTDSSWQPLVHDLTNEGLAFGHELAQALRSMHSATSDSLEDDGFLFQLYMPEGDNVSVFDRADALAGWVNHFLLGLGVTQPKLDKVKDETGEAIDDLRNIAQLGYDEDEDQEELEMSLEEIIEYVRVAALLCHDTFARQQPTAPEVRKPTLH
>NZ_CP011539.1|WP_004205298.1|4947290_4947620_-|cell-division-protein-ZapA
MSAQPVDLQIFGRSLRVNCPPEQRDALNQAAEDLNQRLQDLKERTRVTNTEQLVFIAALNISYELTQEKAKTRDYASSMEQRIRMLQQTIEQALLEQGRISERPGSKFE
>NZ_CP011539.1|WP_015369775.1|4946369_4946966_-|5-formyltetrahydrofolate-cyclo-ligase
MTIQPDIPLSRQQIRQQIRERRRALSAEQQQRFALQAAERMMAYPPVVLAHTVALYLSFDGELDTQPLIEQLWRAGKRVYLPVLHPFSPGNLLFLHYHPQSQLIFNRLKIYEPKLDVRDVLPLAELDVLITPLVAFDASGQRLGMGGGFYDRTLQNWRQYRLQPVGYAHDCQQVDTLPSEQWDIPLPAVITPGKTWRW
>NZ_CP011539.1|WP_015369783.1|4958029_4958533_-|protein-disulfide-oxidoreductase
MASKIRRWLRELAVWLLIGAAVSLAVDYFRQPALPQNFSATSLQTLDGRTLDLNAMSQQKPLLLYVWATWCGVCRYTTPSVASLAADGGNVLTVALRSGDNATLEKWLTRKKMALPTVNDPSGQLARQWDIQVTPTLVVISQGEVKSVTTGWTSNWGMRLRLWLASW
>NZ_CP011539.1|WP_015369784.1|4958522_4959134_-|thioredoxin-domain-containing-protein
MRAITALLLLCVSAFSFAAPAEEPQSNGNDQLAQLLFNDPNSPRTGAKEPTLTIVSFTDYNCPYCKQFDPMLEKIVHDNPDIQLIVKLLPFKGQSSVNAAKAALSTWRQQPDKFWALHQRLMAKKGYHDDASIAAAQKKTATDSVNIDDKTMDSLKMNLILSQVLNIQGTPATIIGDQMVAGAIPADELEGLVKEQLAKARGQ
>NZ_CP011539.1|WP_015369785.1|4959135_4961145_-|thioredoxin-family-protein
MFMVFRRLLVCLLWLWLPVSQAADSGWLRAADNQHASVRLRAQSESNGDTRLLLDVALEKGWKTYWRSPGEGGIAPAIAWHTPLEVNWRWPTPQRFDVAGISTQGYHGDVSFPMTLRGKIPPTLSGVLTLSTCSNVCILTDYPFSLDMTAPAGEQFNYDFTRAMGTLPLRDGLTSALSASYVSGKLTVTARRDAGWQQPALFIDSMEDVDFGKPSFTSHGDTLTATVPVTDSWGEAAPDLSGKTLSLVLADNGQAQESHIAITAGSAAPGLALGWVLLMALAGGLILNVMPCVLPVLAMKLGSLVQTERRERGAVRRQFLASVCGIVVSFLALALMMTALRLGNQALGWGIQFQNPWFIGAMALVMVLFSASLLGLFEIRLSSNASTFLATRGGNGLMGHFWQGAFATLLATPCTAPFLGTAVSVALVAPLPLLWGIFFAMGIGMSLPWLLIVAWPGLAQRLPRPGRWMNHLRVVLGLMMLGSALWLVSLLTIHIGRTPVLTLLVILAIFLLLATAWRYRWRTALRAGALAIVVAGAVAFVAQQDGQGPRRDRVNWQPLSEQAIANALAEHKRVFIDVTADWCVTCKANKYNVLLRDDVQQALSAPDVIALRGDWSRPSADISQFLTARGSAAVPFNQIYGPGLPQGQILPALLDREQLLATLSAAKGK
>NZ_CP011539.1|WP_015369786.1|4961194_4961554_-|copper-resistance-protein
MIKRQRKAILLVLLACLVVLICTAQRMAGMHALVMNVTAASQSAQPGPDNAEAPVSPCELSAKSLMAVPPMLFEGALLAIALLLAVLAAIPPRIERIWPPRVISPPRLRVHLRLCVFRE
>NZ_CP011539.1|WP_015369787.1|4961678_4963112_-|6-phospho-beta-glucosidase-BglA
MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITQQVEAGKYYPNHEAVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPQGDETQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGGWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENPEETMYQVLHHQFVASALAVKAAQRINPEMQVGCMLAMVALYPYSCKPEDVMFAQESMRERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDAQILREGTCAYLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPHVKASDWGWQIDPVGLRYALCELYERYQKPLFIVENGFGAYDKVEADGSINDDYRIDYLRAHVEEMIKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYKEVIASNGENL
>NZ_CP011539.1|WP_015369788.1|4963231_4963960_-|MurR/RpiR-family-transcriptional-regulator
MFSHAAVASLNNLEMMVYHYVIKNRDKVMYMTIRELAEAAGVSTTTVLRFCRKLQCEGYSEFRVRFKLYLEQNEPQQANIGASEIMSFFKSVNNDEFDQLLEQAVDIILSSERIIFVGAGTSGALAKYGARFFSNVGKFSNHIDDPYFPVTNDMARNALAIVLSVSGETEEILRFASQFSLHHCRVMSITSHEHSRLAKLADFNLSWHVPQTRIGGVYDITTQIPVIYILESLGRKLARKIG
>NZ_CP011539.1|WP_015369789.1|4964010_4964322_+|ASCH-domain-containing-protein
MQANDITFFQRFQDDILAGRKTITIRDAAESHFKPGDVLRVGRYEDDGYFCTIAVTATSTVTLDTLTEQHAQQENMTLEQLRQVISEIYPAEDRFYVIEFKRL
>NZ_CP011539.1|WP_008806429.1|4964486_4965146_+|hemolysin-III-family-protein
MVRKPLITQGYSLAEEVANSISHGIGLVFGIVGLVLLLVQAVDTNASATAITSYSLYGGSMIMLFLASTLYHAIPHQRAKQWLKKFDHCAIYLLIAGTYTPFLLVGLNSPLAKGLMIVIWSLALLGILFKLTIAHRFKILSLVTYLTMGWLSLIVVYQLAVKLAVGGVTLLAVGGVVYSLGVIFYVCKRIPYNHAIWHGFVLGGSVCHFLAIYLYVGQS
>NZ_CP011539.1|WP_015369790.1|4965244_4966228_-|tRNA-modifying-protein-YgfZ
MAFTPFPPRQPSSSARLPLTLMTLDDWALATITGPDGEKYLQGQITADVSHLTADQHLLAAHCDAKGKMWSNLRVFHRDGGFAWIERRSLREAQLTELKKYAVFSKVTIAANDDLVLLGVAGFQARAALAPLFAALPDAGKPVVTEGVTSLLWFEHPAERFLLVTDADTANRVTDALRGEAQLNNSQQWLALNIEAGLPVIDSVNSAQFIPQATNLQALGGISFKKGCYTGQEMVARAKFRGANKRALWTLAGTASRVPEAGEDLELKMGDNWRRTGTVLAAVQLDDGSLMVQVVMNNDMEPDSVFRVRDDAGSLSIKPLPYSLEED
>NZ_CP011539.1|WP_015369791.1|4966451_4966718_+|FAD-assembly-factor-SdhE
MDINNKARIHWACRRGMRELDISIMPFFEYEYDTLSDDDKRLFIRLLENDDPDLFNWLMNHGKPADAQLQRMINLIQTRNRERGPVAI

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Crispr_ID: NZ_CP011539_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011539_4

4983284-4983414

Orphan

Consensus_repeat	Method
ATATACGGGAAAAACCCGTATGTT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP011539_4

>merge|NZ_CP011539|4|4983284-4983414|CRISPRCasFinder
ATATACGGGAAAAACCCGTATGTTCAGATGTTGGTTAACTGGATATACAGGAAAAACCCGTATGTCTGCATGATGATATACAGGAAAAACCCGTATGTTTCGGCATGATATACGGGAAAAACCTGTACTAT

>NZ_CP011539|4|4|4983284-4983414|CRISPRCasFinder
ATATACGGGAAAAACCCGTATGTT	CAGATGTTGGTTAACTGG
ATATACAGGAAAAACCCGTATGTC	TGCATGATGATATACAGGAAAAACCCGTATGTTTCGGCATG
ATATACGGGAAAAACCTGTACTAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011539.1\|WP_015369814.1\|4987636_4988005_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011539.1\|WP_015369804.1\|4980820_4981249_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011539.1\|WP_015369800.1\|4975264_4975843_-\|UbiX-family-flavin-prenyltransferase	unknown	unknown	gnl\|CDD\|223241
NZ_CP011539.1\|WP_015369812.1\|4986433_4986751_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011539.1\|WP_015369803.1\|4978561_4979281_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|236782
NZ_CP011539.1\|WP_015369799.1\|4973927_4974482_-\|isopentenyl-diphosphate-Delta-isomerase	unknown	unknown	gnl\|CDD\|235156
NZ_CP011539.1\|WP_015369817.1\|4989386_4991252_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234750
NZ_CP011539.1\|WP_015369808.1\|4984699_4985530_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236768
NZ_CP011539.1\|WP_015369801.1\|4975854_4977348_-\|UbiD-family-decarboxylase	unknown	unknown	gnl\|CDD\|376697
NZ_CP011539.1\|WP_015369806.1\|4981800_4982418_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271192
NZ_CP011539.1\|WP_015369805.1\|4981309_4981756_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011539.1\|WP_015369813.1\|4987418_4987640_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011539.1\|WP_015369811.1\|4986215_4986437_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011539.1\|WP_032710480.1\|4979969_4980695_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|366837
NZ_CP011539.1\|WP_032710479.1\|4989193_4989394_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011539.1\|WP_080473210.1\|4985976_4986216_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011539.1\|WP_015369815.1\|4988026_4989061_+\|major-capsid-protein	unknown	unknown	gnl\|CDD\|377147
NZ_CP011539.1\|WP_015369802.1\|4977559_4978474_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP011539.1\|WP_004144724.1\|4974535_4975252_-\|DUF554-domain-containing-protein	unknown	unknown	gnl\|CDD\|377371
NZ_CP011539.1\|WP_015369807.1\|4984508_4984685_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP011539.1\|WP_015369800.1\|4975264_4975843_-\|UbiX-family-flavin-prenyltransferase	gnl\|CDD\|223241	COG0163, UbiX family flavin prenyltransferase [Coenzyme transport and metabolism].	3.25619e-99
NZ_CP011539.1\|WP_015369817.1\|4989386_4991252_+\|hypothetical-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0.00889335
NZ_CP011539.1\|WP_032710480.1\|4979969_4980695_+\|HNH-endonuclease	gnl\|CDD\|366837	pfam01844, HNH, HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	2.36661e-10
NZ_CP011539.1\|WP_015369803.1\|4978561_4979281_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|236782	PRK10871, nlpD, murein hydrolase activator NlpD.	3.56856e-77
NZ_CP011539.1\|WP_015369799.1\|4973927_4974482_-\|isopentenyl-diphosphate-Delta-isomerase	gnl\|CDD\|235156	PRK03759, PRK03759, isopentenyl-diphosphate Delta-isomerase.	9.78089e-108
NZ_CP011539.1\|WP_015369815.1\|4988026_4989061_+\|major-capsid-protein	gnl\|CDD\|377147	pfam03864, Phage_cap_E, Phage major capsid protein E. Major capsid protein E is involved with the stabilisation of the condensed form of the DNA molecule in phage heads.	1.2991e-08
NZ_CP011539.1\|WP_015369802.1\|4977559_4978474_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	9.92068e-36
NZ_CP011539.1\|WP_015369801.1\|4975854_4977348_-\|UbiD-family-decarboxylase	gnl\|CDD\|376697	pfam01977, UbiD, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase. This family has been characterized as 3-octaprenyl-4- hydroxybenzoate carboxy-lyase enzymes. This enzyme catalyzes the third reaction in ubiquinone biosynthesis. For optimal activity the carboxy-lase was shown to require Mn2+.	9.45664e-142
NZ_CP011539.1\|WP_004144724.1\|4974535_4975252_-\|DUF554-domain-containing-protein	gnl\|CDD\|377371	pfam04474, DUF554, Protein of unknown function (DUF554). Family of uncharacterized prokaryotic proteins. Multiple predicted transmembrane regions suggest that the region is membrane associated.	5.44348e-75
NZ_CP011539.1\|WP_015369806.1\|4981800_4982418_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271192	cd01192, INT_C_like_3, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain contains six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	1.30382e-19
NZ_CP011539.1\|WP_015369808.1\|4984699_4985530_+\|hypothetical-protein	gnl\|CDD\|236768	PRK10819, PRK10819, transport protein TonB; Provisional.	0.000184752

>NZ_CP011539.1|WP_015369806.1|4981800_4982418_-|tyrosine-type-recombinase/integrase
MAISKGAKRTDGLESADQVKLVVEEIAKKSQTVADLFLLGVETQLRGVDMRSWRWVELDIGSKVLRITQDKTKEAVEVELTETAREVLKARYNERGENVYVFQNDSNRSKGKPISRSKIHAEIQYAVDKLKMRGLLPQDAVISMHSSRKTIASIAHAQGEDLEVISKMLGHRSTEHTRAYLGITQAKVDALRTKYSTGIKRVTLR
>NZ_CP011539.1|WP_015369805.1|4981309_4981756_+|hypothetical-protein
MEVKKVSVEDYRADMGLMRGYSFDSQEIQDVKSFYYQEAVKQLSNLNCGIEIIREDENKNVLVFKVNEDLKFQLTLLNNIKYLSVDLHAYEKNNRYEDVLSEQYHYHCKGDSDYEFSDVEEHLEYDRVGQHFRHMLVCLVKEIAKIED
>NZ_CP011539.1|WP_015369804.1|4980820_4981249_+|hypothetical-protein
MADPASIAAISGTLELVNKSVDLVRNLRKKGDDELNAAEMRNTLIDLLDDLVEVKSEFVSLKAVLLSKEEEIQSLKAQLDGKNKLQFDGKLYWLEGDKTPYCTKCYEKDSLVFHLSFIHANRNWNSSEHWHCRNCQANYYLR
>NZ_CP011539.1|WP_032710480.1|4979969_4980695_+|HNH-endonuclease
MSSKSNRTYKYGDQPIRITTVQVVAEQFGGAATAKQVDAYLKERFPHYKDDTHLNLIVNSVNCNRSYWSFNKTARRTDDVTHRHHEYDRLFKRGKTFEIYQPSIHGIWELYQDQQGKWCYRKVKSEFEKAVDGASELPPSERKKILDAENNTPELIEVTTRVYKRSPYVVAEVLSRANGKCQSCMSDAPFLKVDGTPFLEVHHIEWLSNGGEDSVENAIALCPNCHRQAHFGVLELAPVNK
>NZ_CP011539.1|WP_015369803.1|4978561_4979281_+|peptidoglycan-DD-metalloendopeptidase-family-protein
MKTRFYIAIMLLASLTLAGCSSTSDSGSTYTVKRGDTLYAISRSTGTSVRDLARLNNISPPYTIEVGQKLKLNGGSKAKSSTAGKKSSSTRTAAVTPSSAVPQSSWPPVGQRCWRWPTSGKVVMPYSTRDGGNKGIDIAGTRGQPVYAAGAGKVVYVGNQLRGYGNLIMIKHNEDYITAYAHNDKMMVNNGQSVKIGQQIATMGSTDADSVRLHFQIRYRATAIDPLRYLPPQGSKPKC
>NZ_CP011539.1|WP_015369802.1|4977559_4978474_+|LysR-family-transcriptional-regulator
MDLKRLRYFCRVVEHGSVSQAAKSLNMAQPPLSKRIQELEEELQVSLFERRGNRIEPTEAGYFLYRKGCEILRQVEDTARETADIAQKTRAEVRVGLTHLYQNYFQPLLMELYRRNPETAINISVTDSSHLETLLNEGAIDLALIQRPYRSEGFDYVSFDPIKLVAVINKKCLPQPPSNPFDYNALATMPLVLLHRAKDSGTYEMLMDLFRKSGVSAKVIMHITQPGVILDWLEGGLEAATLLPSSEVNAEKLPHCYVVDVFPSPQIFYPALVKLPSMSYLPALMDIIAGGYPFNAPKGVEVVE
>NZ_CP011539.1|WP_015369801.1|4975854_4977348_-|UbiD-family-decarboxylase
MAHSDKKAPSSVHDLRSALALLKTLPGEYVETDTEVDPHAELSGVYRYVGAGGTCQRPTRKNGPVMVFNNIKGFNDISVAIGLNGSRQRVSQFLQCEPAKLGHLLKDSVENAIAPTMVQGAAVCQEVVHLASDDDFDLRKLLPAPTNTEEDAGPYITMGLCYASDPQTGESDITIHRLCVQSRDELSMWLTPGRHIDAFRMKAEAAGQPLPISISIGVDPAIEIAACFEPPTTPLGFDELSIAGALRGHPVEMVQCKTINEKAIAHAEIVIEGELLPNVRVREDQNTNTGRAMPEFPGYTGEAKEAIPVIKVKAVTHRINPIWRTTVGPGEEHVNMAGIPTEASILDMVERAMPGKLLNVFAHSAGGGKLLAVLQFKKSSPADEGRQRQAALLAFSAFPELKHVILVDEDVDIFDSDDVLWAMQTRYQGDVDTVVIPGVRCHPLDPSQVPEYSPSILQQGMSCKTIFDCTVPFHLKHNFERSKFKAVDVKRFLPDFE
>NZ_CP011539.1|WP_015369800.1|4975264_4975843_-|UbiX-family-flavin-prenyltransferase
MTPRIIIGISGASGFQYGVKALELLQPLAVEVHLVVSKGAEKTCELETDYRLDEVMALADVVHPINHLGASISSGSFKTLGMLVAPCSMRSLGAIAHCLTDNLLTRAADVVLKERRRLVLLARETPLNLGHIRNMAAVTEMGGIIFPPVPALYQRPQSADDIITHSVNRALDLFDLEVNNIPRWGEGALHYA
>NZ_CP011539.1|WP_004144724.1|4974535_4975252_-|DUF554-domain-containing-protein
MLIGPYVNGSAVIIGGLIGAMAGGKLPERVKTALPMTFGLCSVGLGITLVLKVKYMPAVVLAMVLGAFLGELLHLEKRIGSAAGSTRGLINKVLPPVQGLGHEEFTEKFVAILVLFCASGTGIFGAMTEGMSGDPSILYIKTILDLFTAGIFATLLGYAVMTIAIPQIVIQVALAMLAVFILPMITPSMMADFSCAGGLLMVATGLRICNIKLFPVANMLPGLVLVMPFSHLWATLVA
>NZ_CP011539.1|WP_015369799.1|4973927_4974482_-|isopentenyl-diphosphate-Delta-isomerase
MAGEHVILLDEQDKPTGMLEKYAAHTLDTPLHLAFSCWLFNEQGQFLVTRRSLSKKAWPGVWTNSVCGHPQQGETFEQAVTRRCHFELGVEIADIAPVHPAFRYRAVAPNGIVENEVCPVFAARVVSELQPNDDEVMDYQWVELPEMLSALAATPWAFSPWMVLEAKNKNARQALIDFVARLRA
>NZ_CP011539.1|WP_015369807.1|4984508_4984685_+|hypothetical-protein
MSETQKKKPAGTFVKLPDEVFTTLFKEARARGLTVQEMLIDAATKLSTSIQSGERSIK
>NZ_CP011539.1|WP_015369808.1|4984699_4985530_+|hypothetical-protein
MTDIINSKVFSFTNTEDAFNECTRITNLKTGVTVSLSPTNKQLFVRIRHRFHNFVKKRGGKYYDNIDQLGESVGVKYDAASDGIKKLKAVGLISGTIKGRSYQWESVADLTPEDFLFERDINAMKRKTAPEWVDCLKHPVFGNAKEDVAPEVQEEKQQSVPEADPMCEFDDTPEEEEPAPEKVEPAPKPKPTKKPAARKAPDKQQTVSPFEFKTPRDETKDWWYLERCNDADQFTGLTDFDLPYLAMFERQGKLTNQHSIQHLKMKRELYARQQQT
>NZ_CP011539.1|WP_080473210.1|4985976_4986216_+|hypothetical-protein
MPTGSEFELLQDVLSSTDNVYYKPRRRREYQVDSSNLQHWQVLGFQHYADYVGYSQTNGLSGHTADFDFIFHDEKEIHD
>NZ_CP011539.1|WP_015369811.1|4986215_4986437_+|hypothetical-protein
MHVQTTQTKRFAQHVKCCQWYYEEIDLITNDAYLTDEEKLAALDELEDKILTLAAPFLAVATTIKAYKERMTQ
>NZ_CP011539.1|WP_015369812.1|4986433_4986751_+|hypothetical-protein
MTKTNIDTLLQDFHDQLHIPLLDACIKASREGTPENLTAALKLLHLASVAMQGIIAVVESTESLSDDQDVLGEVSRMAQSLVTCMQDLDALAHDIAEEYAVLETE
>NZ_CP011539.1|WP_015369813.1|4987418_4987640_+|hypothetical-protein
MFLINNKSRVLKYKNDVLTINPQIIEQVAQYAGCEVSDVIKAMETYFPDESPEQKPTIDDLIARKVKGLNQTK
>NZ_CP011539.1|WP_015369814.1|4987636_4988005_+|hypothetical-protein
MIIDLDTLFPQRLSLTDLVSYSTDHFASIESKIFASLPADVECGDVIGADGSLYTSGADAFVVVSEFVTAGSNKAVNVLRSPARGSLVCIKSDNLTAADGAHDAAVAALAAQGFQMREFFTS
>NZ_CP011539.1|WP_015369815.1|4988026_4989061_+|major-capsid-protein
MAILGQNYVDLSPLFNLNPTRNYLLASLGLFDGVGVSSHKVAVSRLVEDNRSLFNEPTARFSSEHNVTARQNGKEWLIELPYFLREDQITPADIQGKRKPGTDTQETLTDLFTDYTHKHSVAFMRTRESYLARSLFSGTVNTPKTDDVLIDFGDLFGVAPMNTTLDLSATDSSTLRAIDDMVSQITETAQGMAAQVERIIVFAKGGFYSDLRFSPAMEAAFRYVSPLDESNVVYQRRDLLPGVSTFSIPGSNVDVIKVTDPLLLAQMGDADAIAIPQFAAGLNVYQNIYGAPSSNFELLDATPAETYSWSYESERGDVVNCINEHSSLPVNNGLGFSVHIKASE
>NZ_CP011539.1|WP_032710479.1|4989193_4989394_+|hypothetical-protein
MEMILKSSRGLHVRVSADDAEGLLKVSQLCELLEISYTGVRARIFRGETVEQAIHHFLDQKGGGDA
>NZ_CP011539.1|WP_015369817.1|4989386_4991252_+|hypothetical-protein
MLEINTSKIVNTVTFTVDKSSIAEAKKAADDLQRHFKKLENPKIRFQAQKQRRQSAREKVADAKAASPKTSNDLKQQRQAEKAGKAQAREAAKIAKRNETADIKFKSAGLQLRGIKGKYGLDPAKQYEALKFIQQETEAFKKGLITSQRMNFTIRERITDLRREAALQARITASTQQQAAALKHVKRTDYKGAAAGIKEKGLNVIGGGAPLLGATAALAGGAGVLSRIRDKGNENLELVRMSERTKLNPNAVKAIVAWGQQHGVDSASVDKITDGFGKDTREKISETLMNSQFDQKSGKWKGGNSNIEEILNKFGWGKGAIAKYEDNPLDFLQSTVNEGQRRGYSDGEIAHLLENIFDDGAHYVDLFKNNGEQFISTLKKLVDSGQTLNDEQIKQTYAFGDLSVAMSSLMNGVDNSMFTGFMKGFADGGDELVKNTQVITEAAGSLGEGLGNLSKEITGFVGEISGVVSDLNAGLRSRFPDWFSDANKPAAQALYDGAVGDSANATADWIKSKTGVDTREFGPAIMDWLGVGGGNVGTAASQYSLSGDYLRDSAMSFGGGAPAYTLNPTFNLTVAPEVPLTIQTDTSNLADYVDFTAKASQASFAQSLTLSALSGQSSTGG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

167684 : 273903

107

Burkholderia_virus(31.37%)

holin,plate,tail,terminase,integrase,capsid,transposase

attL 171891:171908|attR 270674:270691

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000427614.1\|167684_168689_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_015365582.1\|168992_169592_-	5'-deoxynucleotidase	NA	NA	NA	NA
WP_015365583.1\|169673_170891_-	alanine transaminase AlaA	NA	NA	NA	NA
WP_015365584.1\|171774_172701_+	transcriptional regulator LrhA	NA	NA	NA	NA
171891:171908	attL	NA	NA	NA	NA
WP_002913181.1\|173353_173800_+	NADH-quinone oxidoreductase subunit NuoA	NA	NA	NA	NA
WP_002913178.1\|173815_174490_+	NADH-quinone oxidoreductase subunit NuoB	NA	NA	NA	NA
WP_015365585.1\|174578_176387_+	NADH-quinone oxidoreductase subunit C/D	NA	NA	NA	NA
WP_015365586.1\|176389_176890_+	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA
WP_015365587.1\|176886_178224_+	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA
WP_015706161.1\|178256_180983_+	NADH-quinone oxidoreductase subunit NuoG	NA	NA	NA	NA
WP_015365589.1\|180979_181957_+	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA
WP_015365590.1\|181971_182514_+	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA
WP_015365591.1\|182525_183080_+	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA
WP_004865088.1\|183076_183379_+	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA
WP_032706101.1\|183375_185217_+	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA
WP_015365593.1\|185386_186916_+	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA
WP_015365594.1\|186922_188380_+	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA
WP_015365595.1\|188436_189357_-	ribonuclease Z	NA	NA	NA	NA
WP_015365596.1\|189413_189875_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_015365597.1\|190048_191344_+	isochorismate synthase MenF	NA	NA	NA	NA
WP_015365598.1\|191420_193091_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA
WP_015365599.1\|193087_193846_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA
WP_015365600.1\|193860_194718_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
WP_015365601.1\|194717_195683_+	o-succinylbenzoate synthase	NA	NA	NA	NA
WP_032706100.1\|195679_197041_+	o-succinylbenzoate--CoA ligase	NA	NA	NA	NA
WP_015365603.1\|197037_198555_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA
WP_015365604.1\|198566_198998_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA
WP_015365605.1\|199013_199994_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_015365606.1\|200127_200805_+	transcriptional regulator TctD	NA	NA	NA	NA
WP_015365607.1\|200791_202201_+	sensor histidine kinase	NA	NA	NA	NA
WP_015365608.1\|202197_202623_-	nucleoside triphosphatase NudI	NA	NA	NA	NA
WP_015365610.1\|203049_203592_+	membrane protein	NA	NA	NA	NA
WP_015365611.1\|203686_204886_+	nicotinamide mononucleotide deamidase-related protein YfaY	NA	NA	NA	NA
WP_015365612.1\|204887_206075_-	anaerobic glycerol-3-phosphate dehydrogenase subunit C	NA	NA	NA	NA
WP_015365613.1\|206071_207331_-	glycerol-3-phosphate dehydrogenase subunit GlpB	NA	NA	NA	NA
WP_015365614.1\|207320_208943_-	anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA	NA	NA	NA
WP_015365615.1\|209213_210560_+	glycerol-3-phosphate transporter	NA	NA	NA	NA
WP_015365616.1\|210569_211637_+	glycerophosphodiester phosphodiesterase	A0A220BYK6	Staphylococcus_phage	1.7e-08	50.9
WP_015365617.1\|211730_211985_-	2Fe-2S ferredoxin-like protein	G9IAA2	Pseudomonas_phage	8.2e-26	65.3
WP_015365618.1\|211984_213115_-	ribonucleotide-diphosphate reductase subunit beta	G9IAA3	Pseudomonas_phage	5.1e-176	79.4
WP_015365619.1\|213215_215501_-	ribonucleoside-diphosphate reductase subunit alpha	I3UMG3	Colwellia_phage	2.5e-283	63.6
WP_015365620.1\|215847_216576_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA
WP_061329527.1\|216722_219356_+	DNA topoisomerase (ATP-hydrolyzing) subunit A	G3M9Z5	Bacillus_virus	3.7e-92	30.3
WP_015365622.1\|219487_222340_+	two-component system sensor histidine kinase RcsC	Q8QKV7	Ectocarpus_siliculosus_virus	2.0e-35	25.8
WP_015365624.1\|222452_223103_-	transcriptional regulator RcsB	NA	NA	NA	NA
WP_032706094.1\|223119_225780_-	phosphotransferase RcsD	NA	NA	NA	NA
WP_015365628.1\|226552_227680_+	porin OmpC	Q1MVN1	Enterobacteria_phage	1.4e-120	60.5
WP_015365629.1\|227783_228836_+	FAD:protein FMN transferase ApbE	NA	NA	NA	NA
WP_015365630.1\|228908_229979_+	bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	8.3e-19	52.2
WP_015365631.1\|229978_230638_+	DNA oxidative demethylase AlkB	NA	NA	NA	NA
WP_015365632.1\|230706_232350_+	multidrug ABC transporter permease/ATP-binding protein	W8CYL7	Bacillus_phage	5.4e-09	22.8
WP_015365633.1\|232514_233951_+	magnesium transporter	NA	NA	NA	NA
WP_032706092.1\|233913_235122_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	5.2e-70	45.7
WP_015365635.1\|235399_237034_+	malate dehydrogenase (quinone)	NA	NA	NA	NA
WP_000904922.1\|237338_237911_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	4.6e-85	85.2
WP_024187567.1\|237982_238486_+\|tail	tail fiber protein	Q9MCR6	Enterobacteria_phage	2.7e-36	51.2
WP_172903745.1\|238514_238970_+\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	1.5e-30	49.4
WP_000072166.1\|238976_239591_-\|tail	tail fiber assembly protein	Q9MCR5	Enterobacteria_phage	1.7e-61	61.5
WP_081113187.1\|239590_241222_-\|tail	tail fiber protein	A0A0K2FIZ6	Escherichia_phage	3.4e-40	44.8
WP_000138756.1\|241224_241803_-\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	1.7e-66	66.8
WP_001529034.1\|241795_242899_-\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	1.4e-106	55.0
WP_000859116.1\|242889_243237_-	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	1.7e-34	61.5
WP_000148265.1\|243291_243888_-\|plate	phage baseplate assembly protein V	A4JWL4	Burkholderia_virus	5.4e-36	45.2
WP_015365640.1\|243884_245039_-	phage late control D family protein	Q6QIA2	Burkholderia_phage	5.5e-85	47.3
WP_000478224.1\|245026_245239_-\|tail	tail protein X	Q6QIA3	Burkholderia_phage	1.2e-17	57.1
WP_000458386.1\|245238_246123_-\|tail	phage tail protein	A4JWL1	Burkholderia_virus	6.8e-51	47.9
WP_015365641.1\|246122_249074_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	5.4e-84	29.6
WP_085959828.1\|249149_249308_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_015365642.1\|249231_249567_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_041165544.1\|249664_249946_-	hypothetical protein	NA	NA	NA	NA
WP_162832341.1\|249948_250473_-\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	1.1e-67	66.7
WP_015365644.1\|250469_251897_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A4JWK5	Burkholderia_virus	1.2e-214	76.5
WP_000666499.1\|251886_252138_-	hypothetical protein	NA	NA	NA	NA
WP_001101804.1\|252137_252602_-	Gp37 family protein	Q6QIB2	Burkholderia_phage	9.1e-39	51.7
WP_015365645.1\|252601_253048_-	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	2.2e-34	52.3
WP_000537457.1\|253049_253388_-	DUF2190 family protein	NA	NA	NA	NA
WP_015365646.1\|253397_254351_-	hypothetical protein	A4JWK0	Burkholderia_virus	6.8e-65	44.5
WP_015365647.1\|254365_255481_-	hypothetical protein	A4JWJ9	Burkholderia_virus	1.6e-97	51.6
WP_000135514.1\|255695_256154_-	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	2.6e-30	44.8
WP_000117556.1\|256156_256978_-\|capsid	minor capsid protein	A4JWJ6	Burkholderia_virus	3.1e-98	61.5
WP_015365649.1\|256958_258455_-	DUF935 domain-containing protein	A4JWJ5	Burkholderia_virus	2.7e-169	60.0
WP_000122980.1\|258454_259771_-\|terminase	terminase	A0A2P9JZI8	Alteromonadaceae_phage	1.3e-146	63.5
WP_000533685.1\|259767_260316_-	DUF3486 family protein	A4JWJ3	Burkholderia_virus	1.3e-36	47.3
WP_000227702.1\|260318_260630_-	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	3.0e-30	60.6
WP_015365650.1\|260629_260956_-	hypothetical protein	Q6QIC4	Burkholderia_phage	2.6e-16	45.8
WP_015365651.1\|260952_261603_-	lipoprotein	Q5ZQY9	Pseudomonas_phage	1.2e-09	33.2
WP_015365652.1\|261586_262327_-	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	9.4e-62	50.6
WP_015365653.1\|262329_262680_-\|holin	putative holin	A4JWP3	Burkholderia_virus	5.8e-22	52.2
WP_041165545.1\|262810_263239_+	hypothetical protein	NA	NA	NA	NA
WP_015365654.1\|263327_263876_-	hypothetical protein	Q6QID0	Burkholderia_phage	1.3e-52	61.4
WP_015365655.1\|264306_265071_+	DNA adenine methylase	A2I2Y7	Vibrio_virus	1.4e-97	63.5
WP_032146109.1\|265191_265530_-	helix-turn-helix domain-containing protein	F6MII3	Haemophilus_phage	4.8e-05	34.4
WP_000123378.1\|265630_265819_+	DNA-binding protein	Q5ZQZ9	Pseudomonas_phage	3.9e-17	71.0
WP_015365656.1\|265871_266180_+	helix-turn-helix domain-containing protein	Q5ZR02	Pseudomonas_phage	4.6e-23	55.9
WP_015365657.1\|266190_267102_+	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	1.8e-75	55.7
WP_015365658.1\|267105_268875_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q6QIE0	Burkholderia_phage	5.6e-230	68.7
WP_015365659.1\|268885_270052_+	AAA family ATPase	A4JWN1	Burkholderia_virus	9.7e-122	59.7
WP_000843445.1\|270054_270324_+	hypothetical protein	NA	NA	NA	NA
WP_001140138.1\|270351_270882_+	host-nuclease inhibitor Gam family protein	L7P7T1	Pseudomonas_phage	3.1e-59	67.3
270674:270691	attR	NA	NA	NA	NA
WP_000632576.1\|271170_271443_+	hypothetical protein	NA	NA	NA	NA
WP_000197788.1\|271452_271749_+	hypothetical protein	NA	NA	NA	NA
WP_000763554.1\|271763_271979_+	hypothetical protein	NA	NA	NA	NA
WP_000132035.1\|271975_272659_+	DUF2786 domain-containing protein	L7P7W8	Pseudomonas_phage	2.9e-25	36.7
WP_015365661.1\|272655_272886_+	hypothetical protein	NA	NA	NA	NA
WP_000206212.1\|272875_273082_+	hypothetical protein	NA	NA	NA	NA
WP_015365662.1\|273083_273533_+	regulatory protein GemA	A4JWM5	Burkholderia_virus	5.2e-23	43.6
WP_001281696.1\|273504_273903_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	3.9e-30	55.9

DBSCAN-SWA_2

463139 : 515760

Salmonella_phage(20.63%)

holin,tail,head,terminase,integrase

attL 464299:464312|attR 488569:488582

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015365829.1\|463139_465242_+	elongation factor G	E4ZFJ7	Streptococcus_phage	2.0e-64	27.8
464299:464312	attL	NA	NA	NA	NA
WP_061329532.1\|465280_466705_-	exodeoxyribonuclease I	NA	NA	NA	NA
WP_061329534.1\|466886_468065_+\|integrase	site-specific integrase	K7P703	Enterobacteria_phage	5.4e-221	93.1
WP_045346713.1\|468045_468237_-	AlpA family phage regulatory protein	A0A0P0ZBL0	Stx2-converting_phage	5.4e-30	93.7
WP_061329536.1\|468343_468685_-	hypothetical protein	I3PV00	Vibrio_phage	4.3e-22	52.9
WP_061329642.1\|468687_468909_-	TraR/DksA family transcriptional regulator	Q9ZXI6	Pseudomonas_virus	6.7e-08	46.8
WP_045363820.1\|469126_469318_-	DUF1382 family protein	A0A0P0ZC60	Stx2-converting_phage	6.0e-13	64.4
WP_045363823.1\|469314_470181_-	MmcB family DNA repair protein	A9YWY3	Burkholderia_phage	7.3e-58	40.7
WP_045363826.1\|470177_470396_-	hypothetical protein	NA	NA	NA	NA
WP_061329538.1\|470392_471049_-	DNA methyltransferase	G8C7S6	Escherichia_phage	1.3e-112	87.4
WP_061329539.1\|471045_471474_-	hypothetical protein	M9NYX4	Enterobacteria_phage	4.4e-64	82.4
WP_061329541.1\|471470_472151_-	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	4.3e-122	91.2
WP_061329543.1\|472147_473065_-	recombinase RecT	M9NZA6	Enterobacteria_phage	2.4e-155	87.9
WP_061329545.1\|473086_473365_-	host nuclease inhibitor GamL	M9NZI3	Enterobacteria_phage	1.4e-34	78.5
WP_001752704.1\|473443_473650_-	cell division protein FtsZ	G8C7T2	Escherichia_phage	3.6e-32	100.0
WP_032105103.1\|473646_473805_-	hypothetical protein	G8C7T3	Escherichia_phage	5.4e-20	90.4
WP_032105105.1\|473801_474050_-	hypothetical protein	NA	NA	NA	NA
WP_032936032.1\|474210_474474_-	hypothetical protein	S4TNW9	Salmonella_phage	1.8e-07	43.4
WP_048248330.1\|475357_475732_+	hypothetical protein	NA	NA	NA	NA
WP_032104889.1\|475745_476438_-	helix-turn-helix transcriptional regulator	G8C7U1	Escherichia_phage	1.2e-58	52.4
WP_001514164.1\|476565_476817_+	helix-turn-helix domain-containing protein	G8C7U2	Escherichia_phage	9.0e-17	54.7
WP_032104888.1\|476846_477392_+	toxin YdaT domain-containing protein	G8C7U3	Escherichia_phage	3.6e-79	82.3
WP_032104885.1\|477614_478700_+	replication protein	E5AGE9	Erwinia_phage	2.6e-84	45.4
WP_032104884.1\|478696_480070_+	replicative DNA helicase	E5AGF0	Erwinia_phage	2.4e-167	64.0
WP_032104894.1\|480074_480374_+	hypothetical protein	M1FPD5	Enterobacteria_phage	4.4e-18	53.7
WP_017693170.1\|480615_480912_+	DUF4406 domain-containing protein	A0A222YYT7	Escherichia_phage	7.1e-29	63.0
WP_048248323.1\|480908_481364_+	ead/Ea22-like family protein	Q716F4	Shigella_phage	3.4e-06	36.7
WP_063438729.1\|481536_482250_+	hypothetical protein	H6WRY2	Salmonella_phage	2.8e-23	45.8
WP_032105130.1\|482753_483209_+	recombination protein NinB	Q8VNP6	Enterobacteria_phage	1.9e-33	45.8
WP_039671104.1\|483201_483372_+	NinE family protein	G8C7V4	Escherichia_phage	1.2e-20	85.7
WP_039671103.1\|483364_484006_+	recombination protein NinG	M9NYX8	Enterobacteria_phage	1.2e-105	94.4
WP_032105042.1\|484115_484799_+	antiterminator	I6PDF8	Cronobacter_phage	3.2e-56	52.7
WP_032105041.1\|484798_485275_+	HNH endonuclease	A0A1I9SEX5	Klebsiella_phage	5.1e-37	51.9
WP_001514183.1\|485870_486272_+	hypothetical protein	NA	NA	NA	NA
WP_001514184.1\|486268_486544_+\|holin	phage holin family protein	S4TNV9	Salmonella_phage	5.8e-09	41.0
WP_048248649.1\|486546_487089_+	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	1.4e-75	75.8
WP_032105113.1\|487085_487364_+	hypothetical protein	G8C7W1	Escherichia_phage	7.1e-15	52.2
WP_032105097.1\|487833_488358_+	Rha family transcriptional regulator	Q38450	Enterobacteria_phage	4.6e-71	77.6
WP_017383056.1\|488511_488730_+	hypothetical protein	NA	NA	NA	NA
488569:488582	attR	NA	NA	NA	NA
WP_017383055.1\|488733_488883_+	hypothetical protein	NA	NA	NA	NA
WP_032104708.1\|488896_489535_+	hypothetical protein	I6S676	Salmonella_phage	8.2e-115	92.9
WP_032104706.1\|489567_490023_+	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	2.9e-66	84.0
WP_032104704.1\|490019_491267_+\|terminase	terminase	I6RSK1	Salmonella_phage	6.8e-214	97.3
WP_061329547.1\|491282_492638_+	DUF1073 domain-containing protein	A0A1V0E5Q5	Salmonella_phage	3.3e-230	87.1
WP_032104701.1\|492597_493524_+\|head	SPP1 gp7 family phage head morphogenesis protein	Q5G8Y3	Enterobacteria_phage	3.1e-163	92.9
WP_061329644.1\|493590_494850_+	hypothetical protein	Q5G8Y2	Enterobacteria_phage	1.6e-215	89.3
WP_048248640.1\|494862_495312_+	hypothetical protein	H6WRT3	Salmonella_phage	1.2e-64	85.9
WP_048248638.1\|495329_496406_+	hypothetical protein	Q5G8Y0	Enterobacteria_phage	5.0e-189	91.3
WP_061329549.1\|496415_496709_+	hypothetical protein	A0A1V0E5P8	Salmonella_phage	1.7e-43	88.7
WP_061329551.1\|496771_497176_+	hypothetical protein	A0A1V0E5R0	Salmonella_phage	1.8e-54	77.6
WP_032104756.1\|497345_497696_+	hypothetical protein	G0ZNE2	Cronobacter_phage	9.9e-38	66.1
WP_032104757.1\|497698_498067_+	hypothetical protein	F1C5E3	Cronobacter_phage	8.8e-45	73.8
WP_061329556.1\|498063_498453_+	hypothetical protein	F1C5E4	Cronobacter_phage	4.8e-33	53.1
WP_032708481.1\|498521_499274_+	Ig domain-containing protein	G0ZNE6	Cronobacter_phage	3.6e-45	42.6
WP_061329646.1\|499329_500025_+	hypothetical protein	G0ZNE7	Cronobacter_phage	3.4e-66	56.2
WP_081113192.1\|500030_500384_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_064484068.1\|500507_500675_+	Arc family DNA-binding protein	G9L6D7	Escherichia_phage	7.3e-15	69.8
WP_081113189.1\|500748_501330_+	Bro-N domain-containing protein	A0A0P0J0J1	Acinetobacter_phage	2.0e-27	48.0
WP_061329560.1\|501394_502099_+	Rha family transcriptional regulator	A0A0P0ZDC0	Stx2-converting_phage	7.6e-29	33.2
WP_061329562.1\|502208_502613_+	hypothetical protein	A0A286S1N7	Klebsiella_phage	2.6e-18	44.2
WP_061329564.1\|502672_505006_+	tape measure protein	A0A1B1W284	Salmonella_phage	1.1e-113	47.4
WP_061329566.1\|505005_505503_+	hypothetical protein	F1C5F0	Cronobacter_phage	9.3e-90	91.5
WP_045363946.1\|505502_505973_+	hypothetical protein	F1C5F1	Cronobacter_phage	2.5e-76	89.7
WP_061329569.1\|505935_506352_+	C40 family peptidase	F1C5F2	Cronobacter_phage	7.6e-69	86.8
WP_061329571.1\|506338_508816_+\|tail	phage tail protein	F1C5A7	Cronobacter_phage	0.0e+00	91.5
WP_061811563.1\|508873_511006_+	hypothetical protein	R9TMK5	Aeromonas_phage	1.7e-100	40.2
WP_047076814.1\|511009_511267_+	hypothetical protein	L0ARW5	Klebsiella_phage	1.9e-17	51.8
WP_061329574.1\|511998_512289_+	hypothetical protein	K7PGV5	Enterobacterial_phage	1.5e-10	41.2
WP_061329576.1\|512288_513554_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	4.9e-204	81.8
WP_061329578.1\|513546_514218_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.1e-80	61.3
WP_015365831.1\|514593_515760_+	serine-type D-Ala-D-Ala carboxypeptidase DacD	B6DZZ7	Stx2-converting_phage	4.3e-186	81.6

DBSCAN-SWA_3

708285 : 742440

uncultured_Caudovirales_phage(36.67%)

holin,tail,head,terminase,integrase

attL 700073:700088|attR 718396:718411

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
700073:700088	attL	NA	NA	NA	NA
WP_015365913.1\|708285_709302_-\|integrase	tyrosine-type recombinase/integrase	H9C152	Pectobacterium_phage	3.7e-125	64.2
WP_015365914.1\|709285_709531_-	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	2.8e-07	41.4
WP_015365915.1\|709740_709926_-	hypothetical protein	NA	NA	NA	NA
WP_015365916.1\|709927_710488_-	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	1.2e-48	58.4
WP_015365917.1\|710487_712644_-	hypothetical protein	H9C157	Pectobacterium_phage	2.4e-97	34.2
WP_041165546.1\|712688_713012_-	hypothetical protein	NA	NA	NA	NA
WP_041165547.1\|713501_713888_-	helix-turn-helix domain-containing protein	A5VW98	Enterobacteria_phage	1.5e-15	59.4
WP_041165548.1\|713968_714163_+	hypothetical protein	NA	NA	NA	NA
WP_015365920.1\|714225_714672_+	hypothetical protein	H9C162	Pectobacterium_phage	1.7e-26	51.4
WP_015365921.1\|714755_714914_+	hypothetical protein	NA	NA	NA	NA
WP_061329584.1\|714916_716287_+	hypothetical protein	A0A067ZIA1	Vibrio_phage	3.6e-27	52.3
WP_071458104.1\|716295_717690_+	AAA family ATPase	Q76H51	Enterobacteria_phage	2.4e-103	46.7
WP_015365924.1\|717728_718397_+	hypothetical protein	NA	NA	NA	NA
WP_015365925.1\|718401_718635_+	hypothetical protein	NA	NA	NA	NA
718396:718411	attR	NA	NA	NA	NA
WP_015365926.1\|718631_718784_+	hypothetical protein	NA	NA	NA	NA
WP_015365927.1\|718780_719371_+	adenine DNA methyltransferase	A0A0F6TJC3	Escherichia_coli_O157_typing_phage	7.9e-96	85.0
WP_015365928.1\|719373_719604_+	hypothetical protein	A0A2H4JCC5	uncultured_Caudovirales_phage	3.8e-06	37.3
WP_015365929.1\|719600_720218_+	HNH endonuclease	A0A2H4JEM6	uncultured_Caudovirales_phage	2.3e-05	24.9
WP_015365930.1\|720230_720569_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	2.3e-47	82.9
WP_041165550.1\|720751_720943_+	hypothetical protein	NA	NA	NA	NA
WP_015365932.1\|721011_721608_+	DUF1367 family protein	H9C173	Pectobacterium_phage	2.3e-79	70.7
WP_041165551.1\|721619_721922_+	DUF968 domain-containing protein	A0A1I9KFA7	Aeromonas_phage	3.6e-28	56.8
WP_015365933.1\|722077_722374_+	hypothetical protein	NA	NA	NA	NA
WP_015365934.1\|722401_722845_+	hypothetical protein	NA	NA	NA	NA
WP_015365935.1\|722856_723081_+	hypothetical protein	NA	NA	NA	NA
WP_015365936.1\|723084_724707_+\|head,tail	head-tail connector protein	A0A2H4J3N6	uncultured_Caudovirales_phage	4.3e-168	57.2
WP_015365937.1\|724706_724940_+	hypothetical protein	NA	NA	NA	NA
WP_015365938.1\|724926_725775_+	hypothetical protein	A0A2H4JEQ5	uncultured_Caudovirales_phage	1.7e-43	41.7
WP_032708647.1\|725993_726905_+	hypothetical protein	A0A2H4JC66	uncultured_Caudovirales_phage	2.9e-44	38.3
WP_015365940.1\|726964_727528_+	hypothetical protein	A0A2H4JID6	uncultured_Caudovirales_phage	5.3e-49	51.3
WP_015365941.1\|727529_729524_+	hypothetical protein	A0A2H4J6H2	uncultured_Caudovirales_phage	5.8e-183	48.0
WP_041165607.1\|729526_729976_+	GNAT family N-acetyltransferase	A0A2H4J9Z5	uncultured_Caudovirales_phage	1.2e-22	43.0
WP_015365943.1\|729978_730467_+	hypothetical protein	A0A2H4J679	uncultured_Caudovirales_phage	1.3e-08	43.0
WP_015365944.1\|730472_733184_+	transglycosylase SLT domain-containing protein	G9L6D3	Escherichia_phage	1.4e-275	57.5
WP_041165552.1\|733183_736087_+	hypothetical protein	G9L6D4	Escherichia_phage	0.0e+00	71.4
WP_041165553.1\|736091_736526_-	hypothetical protein	NA	NA	NA	NA
WP_015365947.1\|736679_737027_+	hypothetical protein	A0A2H4J7H0	uncultured_Caudovirales_phage	6.0e-19	46.9
WP_015365948.1\|737023_738634_+\|terminase	phage terminase large subunit	A0A2H4JCA3	uncultured_Caudovirales_phage	6.7e-222	69.3
WP_015365949.1\|738651_740994_+	hypothetical protein	R9TMK5	Aeromonas_phage	2.9e-85	36.8
WP_015365950.1\|740997_741255_+	hypothetical protein	L0ARW5	Klebsiella_phage	1.2e-16	49.4
WP_015365951.1\|741339_741564_+\|holin	class II holin family protein	A0A0P0ZFW5	Escherichia_phage	2.0e-20	70.1
WP_015365952.1\|741547_742084_+	lysozyme	K7PM52	Enterobacteria_phage	6.1e-71	68.8
WP_015365953.1\|742080_742440_+	hypothetical protein	R9TPM9	Aeromonas_phage	6.4e-16	44.0

DBSCAN-SWA_4

790931 : 830952

Aeromonas_phage(19.51%)

holin,plate,head,terminase,integrase

attL 791413:791427|attR 831951:831965

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015366006.1\|790931_791591_-	exodeoxyribonuclease X	A0A0H4IT92	Pseudoalteromonas_phage	7.6e-15	30.1
791413:791427	attL	NA	NA	NA	NA
WP_015366007.1\|791670_791901_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	3.5e-15	57.4
WP_015366008.1\|792035_792410_+	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_015366009.1\|792413_793283_+	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_015366010.1\|793296_793638_+	YebY family protein	NA	NA	NA	NA
WP_032708609.1\|794029_795109_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	A0A2H4IYC8	uncultured_Caudovirales_phage	1.3e-96	50.1
WP_071609883.1\|795083_795356_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.5e-12	40.9
WP_125961766.1\|795422_795815_-	hypothetical protein	NA	NA	NA	NA
WP_032716233.1\|795844_796348_-	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	3.6e-25	44.8
WP_032716232.1\|796344_798681_-	hypothetical protein	H9C157	Pectobacterium_phage	1.5e-97	61.9
WP_032716231.1\|798692_798989_-	hypothetical protein	NA	NA	NA	NA
WP_071609884.1\|799018_799324_-	hypothetical protein	NA	NA	NA	NA
WP_032708600.1\|799395_799602_-	cell division protein FtsZ	G8C7T2	Escherichia_phage	1.2e-14	56.2
WP_032708599.1\|800043_800451_-	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	2.0e-21	43.5
WP_032708597.1\|800528_800756_+	transcriptional regulator	A5VW97	Enterobacteria_phage	4.8e-09	47.5
WP_032716230.1\|800739_801165_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_061329588.1\|802044_802794_+	ATP-binding protein	H6WRX8	Salmonella_phage	6.1e-109	75.9
WP_061329590.1\|802819_803608_+	hypothetical protein	C7BGF1	Burkholderia_phage	2.2e-61	52.1
WP_032716227.1\|804251_804548_+	antitoxin PHD	NA	NA	NA	NA
WP_071647704.1\|804544_804862_+	hypothetical protein	Q5G8V1	Enterobacteria_phage	2.1e-18	73.3
WP_080473220.1\|805334_805769_+	DUF551 domain-containing protein	A0A193GYX5	Enterobacter_phage	4.1e-09	37.8
WP_032716226.1\|805761_806034_+	hypothetical protein	A0A2H4FNB3	Salmonella_phage	5.0e-21	66.7
WP_032716225.1\|806106_806376_+	hypothetical protein	S4TNF2	Salmonella_phage	6.6e-34	79.1
WP_032716223.1\|806457_806787_+	hypothetical protein	K7PGV5	Enterobacterial_phage	3.0e-28	64.9
WP_032708588.1\|806940_807177_+	DinI-like family protein	H6WRY5	Salmonella_phage	2.1e-23	67.1
WP_032708586.1\|807268_807451_+	hypothetical protein	NA	NA	NA	NA
WP_032716222.1\|807521_808115_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	2.5e-49	51.8
WP_032716221.1\|808111_808405_+	DUF1364 domain-containing protein	E5AGG0	Erwinia_phage	2.2e-38	78.5
WP_032716220.1\|808401_808974_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	5.0e-55	57.9
WP_032708581.1\|809259_809607_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	1.0e-39	74.8
WP_032716218.1\|809610_810021_+	structural protein	A0A0A0RQM4	Escherichia_phage	1.1e-40	60.3
WP_032716259.1\|810024_810555_+	DUF2514 domain-containing protein	A0A291AXG6	Shigella_phage	3.6e-07	29.7
WP_032716217.1\|810547_810796_+	hypothetical protein	NA	NA	NA	NA
WP_080957999.1\|810924_811140_-	hypothetical protein	NA	NA	NA	NA
WP_080473229.1\|811138_811369_+	hypothetical protein	A0A076G6T1	Escherichia_phage	2.2e-06	58.8
WP_061329592.1\|811397_812444_+\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	4.4e-65	49.6
WP_081113190.1\|812397_813912_+\|terminase	phage terminase large subunit	Q7Y5U7	Haemophilus_phage	8.7e-131	50.5
WP_032716213.1\|813913_815446_+	DUF1073 domain-containing protein	H9C0V0	Aeromonas_phage	6.0e-103	45.1
WP_086538059.1\|815375_816191_+\|head	phage head morphogenesis protein	H9C0V1	Aeromonas_phage	9.3e-55	42.1
WP_032716212.1\|816203_817565_+	DUF2213 domain-containing protein	A0A219YBB9	Aeromonas_phage	2.1e-67	39.8
WP_032708571.1\|817568_818060_+	hypothetical protein	A0A219YBF2	Aeromonas_phage	2.1e-33	51.6
WP_032716211.1\|818052_819096_+	hypothetical protein	A0A219YBB0	Aeromonas_phage	1.4e-79	46.4
WP_125961763.1\|819097_819610_+	hypothetical protein	H9C0V9	Aeromonas_phage	8.3e-09	38.9
WP_047055412.1\|819612_820053_+	DUF4054 domain-containing protein	H9C0W0	Aeromonas_phage	5.4e-17	44.1
WP_032716207.1\|820058_820628_+	hypothetical protein	H9C0W2	Aeromonas_phage	7.0e-17	32.9
WP_032708564.1\|820624_820993_+	hypothetical protein	NA	NA	NA	NA
WP_032708562.1\|820974_821529_+	hypothetical protein	A0A077KC88	Edwardsiella_phage	1.6e-13	30.6
WP_032716206.1\|821529_823011_+	DUF3383 domain-containing protein	K4PB47	Acinetobacter_phage	1.3e-54	31.6
WP_032716205.1\|823011_823455_+	hypothetical protein	NA	NA	NA	NA
WP_032708559.1\|823462_823939_+	hypothetical protein	A0A068CGG2	Acinetobacter_phage	3.2e-07	30.1
WP_032708558.1\|823980_824160_+	hypothetical protein	NA	NA	NA	NA
WP_032716204.1\|824140_826039_+	lytic transglycosylase domain-containing protein	A0A0M4REK7	Salmonella_phage	7.5e-39	58.2
WP_032716203.1\|826041_826881_+	hypothetical protein	NA	NA	NA	NA
WP_032708555.1\|826882_827188_+	hypothetical protein	A0A077K9U4	Edwardsiella_phage	8.7e-22	47.5
WP_032716202.1\|827184_828066_+	hypothetical protein	NA	NA	NA	NA
WP_032716201.1\|828043_828631_+	hypothetical protein	A1Z003	Burkholderia_virus	8.9e-07	27.5
WP_032716200.1\|828633_829290_+	hypothetical protein	NA	NA	NA	NA
WP_032708550.1\|829355_829712_+	hypothetical protein	NA	NA	NA	NA
WP_032716198.1\|829719_830952_+\|plate	baseplate J/gp47 family protein	A0A077KGW9	Edwardsiella_phage	1.4e-110	52.7
831951:831965	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1161315 : 1195138

Salmonella_phage(56.1%)

plate,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032710309.1\|1161315_1161717_-	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	1.9e-13	39.3
WP_032710308.1\|1161824_1162076_+	helix-turn-helix domain-containing protein	A0A0M4QX15	Salmonella_phage	5.6e-19	56.6
WP_032710307.1\|1162075_1162489_+	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	7.6e-45	70.5
WP_032710303.1\|1162754_1163789_+	hypothetical protein	K7PLZ7	Enterobacterial_phage	7.7e-30	50.4
WP_050483364.1\|1163802_1164075_+	hypothetical protein	NA	NA	NA	NA
WP_126000396.1\|1164101_1164497_+	hypothetical protein	NA	NA	NA	NA
WP_032710299.1\|1164716_1165505_+	hypothetical protein	C7BGF1	Burkholderia_phage	2.6e-62	52.5
WP_050483363.1\|1165501_1166062_+	hypothetical protein	NA	NA	NA	NA
WP_050483361.1\|1166339_1166771_+	hypothetical protein	NA	NA	NA	NA
WP_032710297.1\|1166770_1167196_+	HNH endonuclease	C6ZR29	Salmonella_phage	4.2e-59	81.5
WP_032710400.1\|1168360_1168630_+	hypothetical protein	S4TNF2	Salmonella_phage	1.0e-34	80.2
WP_032710294.1\|1168711_1169041_+	hypothetical protein	K7PGV5	Enterobacterial_phage	5.1e-28	64.9
WP_032710292.1\|1169194_1169428_+	DinI family protein	H6WRY5	Salmonella_phage	3.4e-26	70.1
WP_162868533.1\|1169577_1169745_+	hypothetical protein	NA	NA	NA	NA
WP_032710291.1\|1169881_1170184_+	DUF968 domain-containing protein	A0A2I7QXN1	Vibrio_phage	3.1e-24	57.6
WP_032710288.1\|1170180_1170825_+	DNA methyltransferase	G8C7S6	Escherichia_phage	4.3e-87	74.0
WP_032710286.1\|1170821_1171430_+	hypothetical protein	H9C175	Pectobacterium_phage	1.3e-53	52.0
WP_049046135.1\|1171756_1172059_+	hypothetical protein	O64361	Escherichia_phage	4.0e-35	75.2
WP_032710285.1\|1172058_1172556_+	lysozyme	A0A1V0E5Q7	Salmonella_phage	1.1e-77	82.4
WP_032710284.1\|1172552_1173014_+\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.8e-39	59.1
WP_032710283.1\|1173084_1173285_+	hypothetical protein	NA	NA	NA	NA
WP_045368486.1\|1173310_1173967_+	hypothetical protein	I6S676	Salmonella_phage	4.8e-110	90.2
WP_032710281.1\|1173998_1174472_+	DUF2280 domain-containing protein	H9C190	Pectobacterium_phage	4.7e-51	67.1
WP_032710280.1\|1174670_1176284_+	hypothetical protein	A0A0M5M1R6	Salmonella_phage	1.1e-275	82.9
WP_032710279.1\|1176286_1177738_+	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	4.8e-195	69.6
WP_032710277.1\|1177793_1178342_+	phage Mu F like family protein	A0A0M4REK0	Salmonella_phage	1.1e-48	56.1
WP_032710276.1\|1178603_1179803_+	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	1.8e-107	55.6
WP_032710274.1\|1179814_1180309_+	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	4.5e-52	65.8
WP_032710272.1\|1180320_1181262_+	DUF2184 domain-containing protein	A0A2H4J191	uncultured_Caudovirales_phage	1.1e-139	77.1
WP_032710270.1\|1181307_1181568_+	hypothetical protein	NA	NA	NA	NA
WP_032710268.1\|1181536_1181953_+	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	5.5e-43	64.4
WP_032710266.1\|1181952_1182459_+	hypothetical protein	NA	NA	NA	NA
WP_032710265.1\|1182458_1182863_+	hypothetical protein	A0A2H4J1A4	uncultured_Caudovirales_phage	9.7e-45	72.3
WP_032710264.1\|1182855_1183407_+	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	6.5e-44	48.6
WP_032710263.1\|1183408_1184560_+	DUF3383 family protein	A0A0M4RD26	Salmonella_phage	1.0e-179	82.5
WP_032710262.1\|1184571_1185012_+	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	2.7e-64	83.6
WP_032710261.1\|1185015_1185501_+	hypothetical protein	A0A0M4S6U8	Salmonella_phage	7.8e-49	64.1
WP_032710259.1\|1185536_1185689_+	hypothetical protein	A0A2H4J1A2	uncultured_Caudovirales_phage	1.4e-17	84.0
WP_032710257.1\|1185678_1187595_+	bacteriophage protein	A0A0M4REK7	Salmonella_phage	3.1e-226	64.4
WP_032710255.1\|1187594_1188182_+	bacteriophage protein	A0A0M3ULD5	Salmonella_phage	1.1e-73	77.7
WP_032710253.1\|1188181_1188484_+	hypothetical protein	A0A0M4R5B7	Salmonella_phage	4.0e-35	67.0
WP_032710252.1\|1188486_1189548_+	hypothetical protein	A0A0M4QX01	Salmonella_phage	2.6e-142	75.5
WP_086557771.1\|1189583_1189892_+	hypothetical protein	A0A0M4RTY3	Salmonella_phage	7.6e-34	85.7
WP_032710251.1\|1189982_1191209_+	GIY-YIG nuclease family protein	Q9MC01	Enterobacteria_phage	9.3e-99	62.2
WP_032710249.1\|1191279_1191933_+	hypothetical protein	A0A0M5M1K7	Salmonella_phage	2.2e-70	56.3
WP_032710248.1\|1191934_1192288_+	bacteriophage protein	A0A2H4J629	uncultured_Caudovirales_phage	2.3e-50	80.3
WP_032710247.1\|1192287_1193487_+\|plate	baseplate J/gp47 family protein	A0A0M4RD32	Salmonella_phage	4.4e-154	70.5
WP_032710246.1\|1193483_1194257_+	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	9.7e-78	55.6
WP_032710244.1\|1194256_1195138_+	hypothetical protein	A0A2H4IYR0	uncultured_Caudovirales_phage	3.6e-28	60.2

DBSCAN-SWA_6

2243391 : 2295490

Enterobacteria_phage(41.03%)

holin,tail,head,bacteriocin,terminase,integrase,protease,capsid,portal

attL 2242626:2242641|attR 2292072:2292087

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2242626:2242641	attL	NA	NA	NA	NA
WP_015367360.1\|2243391_2244192_-\|bacteriocin	lipid II-degrading bacteriocin	NA	NA	NA	NA
WP_015367361.1\|2244361_2245492_-\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	7.2e-29	30.5
WP_148660024.1\|2245500_2246100_-	hypothetical protein	A0A1X7QGJ8	Escherichia_phage	2.1e-32	38.3
WP_015367364.1\|2246609_2255936_-	carbohydrate binding domain-containing protein	Q6UAW1	Klebsiella_phage	4.1e-21	36.6
WP_041165565.1\|2256002_2256602_-\|tail	tail assembly protein	Q6UAW2	Klebsiella_phage	1.2e-78	78.0
WP_041165566.1\|2256649_2257072_-	hypothetical protein	NA	NA	NA	NA
WP_015367366.1\|2257112_2257823_-	C40 family peptidase	Q6UAW4	Klebsiella_phage	3.7e-140	92.8
WP_015367367.1\|2257824_2258580_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	8.7e-132	85.3
WP_015367368.1\|2258576_2258924_-\|tail	phage tail protein	K7PJT2	Enterobacteria_phage	3.2e-36	63.5
WP_015367369.1\|2258974_2262121_-\|tail	phage tail tape measure protein	E4WL33	Enterobacteria_phage	0.0e+00	71.6
WP_071824267.1\|2262104_2262419_-\|tail	phage tail assembly protein T	E4WL32	Enterobacteria_phage	7.0e-43	78.8
WP_015367371.1\|2262439_2262868_-\|tail	phage minor tail protein G	M9NZD7	Enterobacteria_phage	1.7e-36	60.0
WP_041165567.1\|2262878_2263622_-\|tail	phage tail protein	K7PKX6	Enterobacterial_phage	1.6e-114	85.4
WP_015367373.1\|2263628_2264027_-\|tail	phage tail protein	K7P7G5	Enterobacteria_phage	5.4e-56	76.5
WP_080624897.1\|2264023_2264608_-\|tail	phage tail protein	M9NZH5	Enterobacteria_phage	2.5e-78	77.8
WP_041165568.1\|2264616_2264970_-\|tail	tail attachment protein	K7P6U9	Enterobacteria_phage	3.0e-42	65.8
WP_015367375.1\|2264980_2265400_-	DNA packaging protein	A0A2R9YJP4	Escherichia_phage	1.8e-22	52.2
WP_015367376.1\|2265450_2266476_-\|capsid	major capsid protein	K7P6G7	Enterobacteria_phage	3.4e-179	92.7
WP_015367377.1\|2266543_2266876_-\|head	head decoration protein	E4WL24	Enterobacteria_phage	6.7e-44	79.1
WP_015367378.1\|2266885_2268217_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	2.4e-172	73.8
WP_015367379.1\|2268197_2269790_-\|portal	phage portal protein	E4WL21	Enterobacteria_phage	8.2e-273	86.6
WP_015367380.1\|2269786_2269993_-	gpW family protein	K7PM10	Enterobacteria_phage	6.7e-26	88.1
WP_041165569.1\|2269992_2271915_-\|terminase	phage terminase large subunit family protein	E4WL19	Enterobacteria_phage	0.0e+00	89.5
WP_015367382.1\|2271889_2272435_-\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	5.2e-86	86.7
WP_015367383.1\|2272728_2273148_-	hypothetical protein	Q6UAS0	Klebsiella_phage	7.7e-37	56.4
WP_015367384.1\|2273147_2273474_-	hypothetical protein	NA	NA	NA	NA
WP_134874998.1\|2273645_2273873_+	hypothetical protein	NA	NA	NA	NA
WP_173390334.1\|2274552_2275029_-	DUF2514 family protein	NA	NA	NA	NA
WP_015367388.1\|2275061_2275595_-	lysozyme	G9L6J6	Escherichia_phage	7.4e-85	83.3
WP_032706073.1\|2275596_2275845_-\|holin	class II holin family protein	A0A127KNH9	Pseudomonas_phage	4.9e-07	35.1
WP_041165571.1\|2275949_2276357_-	type II toxin-antitoxin system HicB family antitoxin	F1C593	Cronobacter_phage	2.6e-53	81.1
WP_012542177.1\|2276404_2276581_-	type II toxin-antitoxin system HicA family toxin	A0A0R6PD93	Moraxella_phage	1.4e-08	56.4
WP_041165614.1\|2276948_2277551_-	hypothetical protein	H9C175	Pectobacterium_phage	2.8e-80	71.6
WP_015367392.1\|2277564_2278596_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	5.2e-95	49.9
WP_015367393.1\|2278595_2278799_-	hypothetical protein	NA	NA	NA	NA
WP_015367394.1\|2278795_2279188_-\|protease	SOS-response repressor and protease LexA	K7PHB4	Enterobacterial_phage	8.3e-17	43.3
WP_015367395.1\|2279530_2279764_-	DinI family protein	K7PM44	Enterobacteria_phage	2.3e-27	74.0
WP_041165572.1\|2279957_2280755_-	hypothetical protein	NA	NA	NA	NA
WP_015367397.1\|2280764_2280959_-	hypothetical protein	NA	NA	NA	NA
WP_015367400.1\|2282530_2282758_-	hypothetical protein	NA	NA	NA	NA
WP_015367401.1\|2282754_2283237_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	5.7e-68	79.6
WP_015367402.1\|2283237_2283552_-	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	2.5e-08	64.3
WP_173390333.1\|2283861_2284533_-	replication protein	A0A0U2JGJ0	Escherichia_phage	6.5e-62	70.2
WP_061329614.1\|2285382_2285937_-	hypothetical protein	NA	NA	NA	NA
WP_032705623.1\|2285939_2286164_-	helix-turn-helix transcriptional regulator	A0A077K9X2	Edwardsiella_phage	7.8e-12	56.7
WP_032705621.1\|2286265_2286649_+	helix-turn-helix domain-containing protein	K7PH19	Enterobacteria_phage	5.1e-19	63.5
WP_032705620.1\|2287359_2287554_+	DUF1482 family protein	NA	NA	NA	NA
WP_148660026.1\|2288717_2290196_+	exonuclease	K7PLW7	Enterobacteria_phage	1.5e-58	59.3
WP_071609812.1\|2290265_2290499_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_041165621.1\|2290482_2291502_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	6.8e-79	48.9
WP_041165574.1\|2291830_2292112_+	hypothetical protein	NA	NA	NA	NA
2292072:2292087	attR	NA	NA	NA	NA
WP_041165575.1\|2292121_2292550_+	hypothetical protein	NA	NA	NA	NA
WP_015367409.1\|2292936_2294565_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015367411.1\|2294830_2295490_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	4.9e-46	53.9

DBSCAN-SWA_7

5329666 : 5405897

Escherichia_phage(30.43%)

holin,plate,tail,head,lysis,tRNA,terminase,integrase,capsid,portal,transposase

attL 5338563:5338578|attR 5391768:5391783

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015370148.1\|5329666_5330908_-\|integrase	integrase	A0A1B5FPC6	Escherichia_phage	3.7e-103	48.0
WP_015370247.1\|5331617_5332100_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	46.8
WP_026612237.1\|5332214_5332691_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_015370249.1\|5332680_5332971_+	RnfH family protein	NA	NA	NA	NA
WP_015370250.1\|5333034_5333373_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_015370251.1\|5333520_5335182_-	DNA repair protein RecN	NA	NA	NA	NA
WP_015370252.1\|5335268_5336147_-	NAD(+) kinase	NA	NA	NA	NA
WP_015370253.1\|5336270_5336861_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_026612238.1\|5336964_5338251_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_015703199.1\|5338268_5339060_-	inner membrane protein YpjD	NA	NA	NA	NA
5338563:5338578	attL	NA	NA	NA	NA
WP_020078159.1\|5339226_5340591_+	signal recognition particle protein	NA	NA	NA	NA
WP_015370257.1\|5340829_5341078_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_015703198.1\|5341096_5341645_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_008806092.1\|5341676_5342444_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_002914145.1\|5342483_5342831_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_071647615.1\|5342990_5343209_-	DNA-binding transcriptional regulator	Q37973	Salmonella_virus	2.0e-33	88.9
WP_015370157.1\|5343287_5344451_-	phage late control D family protein	Q6K1G4	Salmonella_virus	2.8e-201	93.5
WP_015370158.1\|5344447_5344933_-\|tail	phage tail protein	O80317	Escherichia_phage	5.0e-80	94.3
WP_015370159.1\|5344947_5347389_-\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	0.0e+00	88.6
WP_015370160.1\|5347381_5347501_-\|tail	GpE family phage tail protein	O80316	Escherichia_phage	8.8e-15	97.4
WP_015370161.1\|5347533_5347869_-\|tail	phage tail assembly protein	Q37846	Escherichia_phage	6.1e-45	86.2
WP_015370162.1\|5347931_5348450_-\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	9.4e-93	99.4
WP_015370163.1\|5348465_5349644_-\|tail	phage tail sheath protein	Q37844	Escherichia_phage	6.0e-212	94.9
WP_015370164.1\|5349775_5350393_-\|tail	tail fiber assembly protein	A0A218M4J2	Erwinia_phage	3.9e-53	55.2
WP_015370165.1\|5350392_5351868_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	1.2e-108	49.0
WP_015370166.1\|5351864_5352473_-\|tail	phage tail protein I	A0A218M4J3	Erwinia_phage	1.6e-107	93.1
WP_015370167.1\|5352465_5353374_-\|plate	baseplate assembly protein	A0A218M4K5	Erwinia_phage	2.6e-154	96.4
WP_015370168.1\|5353380_5353728_-	GPW/gp25 family protein	A0A218M4K8	Erwinia_phage	3.1e-52	92.2
WP_032710455.1\|5353724_5354366_-\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	6.3e-99	85.9
WP_015370170.1\|5354439_5355798_-	DUF4062 domain-containing protein	NA	NA	NA	NA
WP_015370171.1\|5355849_5356311_-	phage virion morphogenesis protein	O80313	Escherichia_phage	1.1e-52	76.2
WP_015370172.1\|5356303_5356771_-\|tail	phage tail protein	A0A218M4K6	Erwinia_phage	2.3e-82	97.4
WP_001384078.1\|5356733_5356907_-	hypothetical protein	O80311	Escherichia_phage	6.2e-25	98.2
WP_015370173.1\|5356878_5357292_-\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	1.6e-63	94.2
WP_015370174.1\|5357288_5357786_-	glycoside hydrolase family 104 protein	S4TUB1	Salmonella_phage	1.1e-87	93.3
WP_015370175.1\|5357772_5358069_-\|holin	phage holin family protein	A0A0M5M1H1	Salmonella_phage	1.1e-45	95.9
WP_015370176.1\|5358071_5358275_-\|tail	tail protein X	A0A0M3ULF4	Salmonella_phage	8.3e-29	91.0
WP_015370177.1\|5358274_5358784_-\|head	head completion/stabilization protein	A0A218M4L7	Erwinia_phage	1.5e-87	94.7
WP_015370178.1\|5358877_5359627_-\|terminase	terminase endonuclease subunit	O80305	Escherichia_phage	4.9e-111	90.4
WP_015370179.1\|5359631_5360699_-\|capsid	phage major capsid protein, P2 family	O80304	Escherichia_phage	1.8e-178	89.3
WP_015370180.1\|5360775_5361630_-\|capsid	GPO family capsid scaffolding protein	Q01088	Escherichia_phage	1.7e-152	94.0
WP_032710453.1\|5361795_5363565_+\|terminase	terminase ATPase subunit family protein	Q9T0R3	Escherichia_phage	0.0e+00	97.3
WP_015370183.1\|5363567_5364614_+\|portal	phage portal protein	A0A2I8TV74	Erwinia_phage	1.4e-188	94.0
WP_015370185.1\|5366391_5366880_-	hypothetical protein	NA	NA	NA	NA
WP_032710487.1\|5367167_5367350_-	hypothetical protein	A0A0M5M1G5	Salmonella_phage	3.6e-23	88.3
WP_161940104.1\|5367462_5369559_-	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	88.1
WP_015370188.1\|5369707_5369989_-	DUF5405 family protein	A0A218M4I8	Erwinia_phage	1.4e-42	91.4
WP_032710449.1\|5369985_5370282_-	DUF3850 domain-containing protein	A0A2D1GP44	Escherichia_phage	3.0e-11	45.5
WP_015370189.1\|5370282_5370504_-	TraR/DksA family transcriptional regulator	A0A218M4I6	Erwinia_phage	5.3e-29	86.3
WP_015370190.1\|5370503_5370737_-	DUF2732 family protein	Q6K1F6	Salmonella_virus	1.7e-22	75.3
WP_015370191.1\|5370800_5371088_-	hypothetical protein	F1BUS4	Erwinia_phage	1.3e-24	57.0
WP_071647612.1\|5371168_5371369_-	DUF2724 domain-containing protein	A0A0M4RTI3	Salmonella_phage	1.0e-15	78.0
WP_015370192.1\|5371376_5371886_-	phage regulatory CII family protein	Q6K1F8	Salmonella_virus	9.2e-85	93.5
WP_014343378.1\|5371917_5372049_-	hypothetical protein	NA	NA	NA	NA
WP_032710448.1\|5372269_5373127_+	phage repressor protein CI	Q6K1G0	Salmonella_virus	5.2e-88	56.0
WP_071647611.1\|5373135_5373474_+	DUF2511 domain-containing protein	A0A0M3ULF8	Salmonella_phage	1.7e-34	63.4
WP_015370196.1\|5373495_5373996_+	PH domain-containing protein	A0A1D9C9Q4	Salinivibrio_phage	3.0e-48	62.7
WP_032710447.1\|5374079_5375111_+\|integrase	site-specific integrase	A0A0M4S6G4	Salmonella_phage	6.1e-176	87.0
WP_032706438.1\|5375344_5375794_+	DUF2946 domain-containing protein	NA	NA	NA	NA
WP_015370260.1\|5375850_5377221_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_015370261.1\|5377226_5377706_-	OmpA family protein	NA	NA	NA	NA
WP_015370262.1\|5377718_5378942_-	diguanylate cyclase DgcN	NA	NA	NA	NA
WP_026612240.1\|5378934_5379444_-	YfiR family protein	NA	NA	NA	NA
WP_015370264.1\|5379787_5380858_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	5.3e-90	51.7
WP_015370265.1\|5380867_5381989_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_015370266.1\|5382056_5382929_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_015370267.1\|5382925_5384086_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_100279143.1\|5384187_5384235_-	pheA operon leader peptide PheL	NA	NA	NA	NA
WP_002914111.1\|5384349_5384685_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_015370268.1\|5384957_5385695_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_015370269.1\|5385826_5386807_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000427614.1\|5387499_5388504_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_032706294.1\|5388991_5391565_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.0e-127	35.4
WP_015370272.1\|5397598_5398897_+	MFS transporter	Q6JIH2	Burkholderia_virus	1.5e-43	30.2
5391768:5391783	attR	NA	NA	NA	NA
WP_015370273.1\|5398899_5399223_-	YfiM family lipoprotein	NA	NA	NA	NA
WP_015370274.1\|5399265_5400621_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_015370275.1\|5400717_5403393_-	protein lysine acetyltransferase	NA	NA	NA	NA
WP_015703189.1\|5403428_5404127_-\|tRNA	tRNA-uridine aminocarboxypropyltransferase	NA	NA	NA	NA
WP_015370277.1\|5404196_5404622_-	thioredoxin TrxC	A0A1J0GW78	Streptomyces_phage	3.5e-13	39.0
WP_015703188.1\|5404826_5405897_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011540

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP011539

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection