CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP014512	Burkholderia sp. PAMC 28687 plasmid 5, complete sequence	0 crisprs	NA	0	0
NZ_CP014511	Burkholderia sp. PAMC 28687 plasmid 4, complete sequence	0 crisprs	NA	0	0
NZ_CP014509	Burkholderia sp. PAMC 28687 plasmid 2, complete sequence	0 crisprs	NA	0	1
NZ_CP014510	Burkholderia sp. PAMC 28687 plasmid 3, complete sequence	0 crisprs	RT	0	0
NZ_CP014505	Burkholderia sp. PAMC 28687 chromosome 1, complete sequence	1 crisprs	RT,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,csa3	12	5
NZ_CP014508	Burkholderia sp. PAMC 28687 plasmid 1, complete sequence	0 crisprs	RT	0	3
NZ_CP014506	Burkholderia sp. PAMC 28687 chromosome 2	0 crisprs	csa3,cas3	0	1
NZ_CP014507	Burkholderia sp. PAMC 28687 chromosome 3	0 crisprs	DinG,cas3,csa3	0	3

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014505_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014505_1

1868527-1869577

TypeI-F

I-F

Consensus_repeat	Method
TTTCTGAGCTGCCTGTGCGGCAGCAAA	CRISPRCasFinder
TTTCTGAGCTGCCTGTGCGGCAGCAAAC	CRT
TTTCTGAGCTGCCTGTGCGGCAGCAAA	PILER-CR

17 spacers

cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1

The CRISPR arrays of NZ_CP014505_1

>merge|NZ_CP014505|1|1868527-1869577|CRISPRCasFinder,CRT,PILER-CR
GTTCTGAGCTGCCTGTGCGGCAGCAAACAAGGGGTACGCCGATTCGCAGAACAGTAAATATTTCTGAACTGCCTGTGTGGCAGCAAACCTCACGCATCGCATCAAGCGCGTTGTTAGCCCTTTCTGAGCTGCCTGCGCGGCAGCGAACTTGGACGGGCTTTGCTTCGCGGCTCGGATTGATTTTCTGAGCTGCCTGCGCGGCAGCGAACAAACCACGGGAACGGCCTTAGTCGCCCTAGTCTTTCTGAGCTGCCTGCGCGGCAGCGAACACGCGAAAAATTCGCCTCTTCTAAGATCGTGGATTTCTGAGATGCCTATGCGGCAGCAAACTAACTAAAGACACGGAGCTAGCTGAGGCGGTATTTCTGAGCTGCCTGTGCGGCAGCAAACATCATCGGCCGCTGCTTTGCGCTGTTGAGGATTTTCTGAGCTGCCTGTGCGGCAGCAAATTGTACGTGCGCGCCTCTGGTGGCCCCGTCATCTTTCTGAGCTGCCTGTGCGGCAGCAAACCGCAGAAATCCGTACCGCCGCTGAGATTTCAGTTTTCTGAGCTGCCTGTGCGGCAGCAAACGGAGTGGTCTTGAACCCGCAGTGGGTCGACGGTTTCTGAGCTGCCTGTGCGGCAGCAAACCGATGACTTCGCCGCTTTGCGGGTCCGGCTCGTTTCTGAGCTGCCTGTGCGGCAGCAAACATGAAGATCCCGCGCGCGCCGAGCGTCATCGATTTCTGAGCTGCCTGTGCGGCAGCAAACCGTACGACGGCCTTCAGTGGACGACCTGGGTTTTTCTGAGCTGCCTGTGCGGCAGCAAACAGCGATCATGAAATCGCGCGCGATACCCTGTTTTTCTGAGCTGCCTGTGCGGCAGCAAACGAACGACTATCGACGCTACCCGATGAGGCAAATTTCTGAGCTGCCTGTGCGGCAGCAAACGTGAATCCATTGCGCAGCACGAGCACGCATATTTTCTGAGCTGCCTGTGCGGCAGCAAATTCTGGCGGCGCTTTCTCGTCCGCGCTCCACTCTTTCTGAGCTGCCTGTGCGGCAGCAAAC

>NZ_CP014505|1|1|1868527-1869576|CRISPRCasFinder
GTTCTGAGCTGCCTGTGCGGCAGCAAA	CAAGGGGTACGCCGATTCGCAGAACAGTAAATA
TTTCTGAACTGCCTGTGTGGCAGCAAA	CCTCACGCATCGCATCAAGCGCGTTGTTAGCCC
TTTCTGAGCTGCCTGCGCGGCAGCGAA	CTTGGACGGGCTTTGCTTCGCGGCTCGGATTGAT
TTTCTGAGCTGCCTGCGCGGCAGCGAA	CAAACCACGGGAACGGCCTTAGTCGCCCTAGTC
TTTCTGAGCTGCCTGCGCGGCAGCGAA	CACGCGAAAAATTCGCCTCTTCTAAGATCGTGGA
TTTCTGAGATGCCTATGCGGCAGCAAA	CTAACTAAAGACACGGAGCTAGCTGAGGCGGTA
TTTCTGAGCTGCCTGTGCGGCAGCAAA	CATCATCGGCCGCTGCTTTGCGCTGTTGAGGAT
TTTCTGAGCTGCCTGTGCGGCAGCAAA	TTGTACGTGCGCGCCTCTGGTGGCCCCGTCATC
TTTCTGAGCTGCCTGTGCGGCAGCAAA	CCGCAGAAATCCGTACCGCCGCTGAGATTTCAGT
TTTCTGAGCTGCCTGTGCGGCAGCAAA	CGGAGTGGTCTTGAACCCGCAGTGGGTCGACGG
TTTCTGAGCTGCCTGTGCGGCAGCAAA	CCGATGACTTCGCCGCTTTGCGGGTCCGGCTCG
TTTCTGAGCTGCCTGTGCGGCAGCAAA	CATGAAGATCCCGCGCGCGCCGAGCGTCATCGA
TTTCTGAGCTGCCTGTGCGGCAGCAAA	CCGTACGACGGCCTTCAGTGGACGACCTGGGTT
TTTCTGAGCTGCCTGTGCGGCAGCAAA	CAGCGATCATGAAATCGCGCGCGATACCCTGTT
TTTCTGAGCTGCCTGTGCGGCAGCAAA	CGAACGACTATCGACGCTACCCGATGAGGCAAA
TTTCTGAGCTGCCTGTGCGGCAGCAAA	CGTGAATCCATTGCGCAGCACGAGCACGCATAT
TTTCTGAGCTGCCTGTGCGGCAGCAAA	TTCTGGCGGCGCTTTCTCGTCCGCGCTCCACTC
TTTCTGAGCTGCCTGTGCGGCAGCAAA

>NZ_CP014505|1|1|1868527-1869577|CRT
GTTCTGAGCTGCCTGTGCGGCAGCAAAC	AAGGGGTACGCCGATTCGCAGAACAGTAAATA
TTTCTGAACTGCCTGTGTGGCAGCAAAC	CTCACGCATCGCATCAAGCGCGTTGTTAGCCC
TTTCTGAGCTGCCTGCGCGGCAGCGAAC	TTGGACGGGCTTTGCTTCGCGGCTCGGATTGAT
TTTCTGAGCTGCCTGCGCGGCAGCGAAC	AAACCACGGGAACGGCCTTAGTCGCCCTAGTC
TTTCTGAGCTGCCTGCGCGGCAGCGAAC	ACGCGAAAAATTCGCCTCTTCTAAGATCGTGGA
TTTCTGAGATGCCTATGCGGCAGCAAAC	TAACTAAAGACACGGAGCTAGCTGAGGCGGTA
TTTCTGAGCTGCCTGTGCGGCAGCAAAC	ATCATCGGCCGCTGCTTTGCGCTGTTGAGGAT
TTTCTGAGCTGCCTGTGCGGCAGCAAAT	TGTACGTGCGCGCCTCTGGTGGCCCCGTCATC
TTTCTGAGCTGCCTGTGCGGCAGCAAAC	CGCAGAAATCCGTACCGCCGCTGAGATTTCAGT
TTTCTGAGCTGCCTGTGCGGCAGCAAAC	GGAGTGGTCTTGAACCCGCAGTGGGTCGACGG
TTTCTGAGCTGCCTGTGCGGCAGCAAAC	CGATGACTTCGCCGCTTTGCGGGTCCGGCTCG
TTTCTGAGCTGCCTGTGCGGCAGCAAAC	ATGAAGATCCCGCGCGCGCCGAGCGTCATCGA
TTTCTGAGCTGCCTGTGCGGCAGCAAAC	CGTACGACGGCCTTCAGTGGACGACCTGGGTT
TTTCTGAGCTGCCTGTGCGGCAGCAAAC	AGCGATCATGAAATCGCGCGCGATACCCTGTT
TTTCTGAGCTGCCTGTGCGGCAGCAAAC	GAACGACTATCGACGCTACCCGATGAGGCAAA
TTTCTGAGCTGCCTGTGCGGCAGCAAAC	GTGAATCCATTGCGCAGCACGAGCACGCATAT
TTTCTGAGCTGCCTGTGCGGCAGCAAAT	TCTGGCGGCGCTTTCTCGTCCGCGCTCCACTC
TTTCTGAGCTGCCTGTGCGGCAGCAAAC

>NZ_CP014505|1|1|1868889-1869576|PILER-CR
TTTCTGAGCTGCCTGTGCGGCAGCAAA	CATCATCGGCCGCTGCTTTGCGCTGTTGAGGAT
TTTCTGAGCTGCCTGTGCGGCAGCAAA	TTGTACGTGCGCGCCTCTGGTGGCCCCGTCATC
TTTCTGAGCTGCCTGTGCGGCAGCAAA	CCGCAGAAATCCGTACCGCCGCTGAGATTTCAGT
TTTCTGAGCTGCCTGTGCGGCAGCAAA	CGGAGTGGTCTTGAACCCGCAGTGGGTCGACGG
TTTCTGAGCTGCCTGTGCGGCAGCAAA	CCGATGACTTCGCCGCTTTGCGGGTCCGGCTCG
TTTCTGAGCTGCCTGTGCGGCAGCAAA	CATGAAGATCCCGCGCGCGCCGAGCGTCATCGA
TTTCTGAGCTGCCTGTGCGGCAGCAAA	CCGTACGACGGCCTTCAGTGGACGACCTGGGTT
TTTCTGAGCTGCCTGTGCGGCAGCAAA	CAGCGATCATGAAATCGCGCGCGATACCCTGTT
TTTCTGAGCTGCCTGTGCGGCAGCAAA	CGAACGACTATCGACGCTACCCGATGAGGCAAA
TTTCTGAGCTGCCTGTGCGGCAGCAAA	CGTGAATCCATTGCGCAGCACGAGCACGCATAT
TTTCTGAGCTGCCTGTGCGGCAGCAAA	TTCTGGCGGCGCTTTCTCGTCCGCGCTCCACTC
TTTCTGAGCTGCCTGTGCGGCAGCAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014505.1\|WP_061999597.1\|1880273_1881647_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP014505.1\|WP_061999589.1\|1866489_1867755_-\|hemagglutinin-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379124
NZ_CP014505.1\|WP_061999599.1\|1882271_1882967_-\|ribose-5-phosphate-isomerase-RpiA	unknown	unknown	gnl\|CDD\|234816
NZ_CP014505.1\|WP_061999592.1\|1871330_1872410_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP014505.1\|WP_061999584.1\|1863266_1863482_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014505.1\|WP_061999591.1\|1869707_1870271_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	pfam09618_cas6f_CAS-I-F	gnl\|CDD\|378224
NZ_CP014505.1\|WP_061999594.1\|1874207_1877750_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3-cas2	cas3-cas2-CAS-I-F	gnl\|CDD\|274201
NZ_CP014505.1\|WP_155524199.1\|1864150_1865134_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014505.1\|WP_086384065.1\|1860982_1861276_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014505.1\|WP_061999588.1\|1865872_1866505_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014505.1\|WP_061999595.1\|1877746_1878739_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|187849
NZ_CP014505.1\|WP_061999598.1\|1881721_1881958_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014505.1\|WP_082778779.1\|1865271_1865499_+\|type-I-addiction-module-toxin,-SymE-family	unknown	unknown	gnl\|CDD\|370150
NZ_CP014505.1\|WP_061999593.1\|1872406_1873807_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	pfam09611_cas8f_CAS-I-F	gnl\|CDD\|378220
NZ_CP014505.1\|WP_061999582.1\|1857608_1860005_+\|polysaccharide-biosynthesis-tyrosine-autokinase	unknown	unknown	gnl\|CDD\|183173
NZ_CP014505.1\|WP_155524201.1\|1867781_1868033_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014505.1\|WP_062000883.1\|1870276_1871293_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP014505.1\|WP_061999587.1\|1865593_1865839_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014505.1\|WP_082778778.1\|1863517_1863808_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014505.1\|WP_061999596.1\|1878893_1880066_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340833

Protein	Function_ID	Function_description	E-value
NZ_CP014505.1\|WP_061999597.1\|1880273_1881647_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	5.72549e-60
NZ_CP014505.1\|WP_061999589.1\|1866489_1867755_-\|hemagglutinin-repeat-containing-protein	gnl\|CDD\|379124	pfam13332, Fil_haemagg_2, Haemagluttinin repeat.	8.93331e-32
NZ_CP014505.1\|WP_061999599.1\|1882271_1882967_-\|ribose-5-phosphate-isomerase-RpiA	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	6.43605e-112
NZ_CP014505.1\|WP_061999592.1\|1871330_1872410_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	2.36586e-141
NZ_CP014505.1\|WP_061999591.1\|1869707_1870271_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	2.33845e-82
NZ_CP014505.1\|WP_061999594.1\|1874207_1877750_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NZ_CP014505.1\|WP_062000883.1\|1870276_1871293_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP014505.1\|WP_061999595.1\|1877746_1878739_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187849	cd09718, Cas1_I-F, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	0
NZ_CP014505.1\|WP_082778779.1\|1865271_1865499_+\|type-I-addiction-module-toxin,-SymE-family	gnl\|CDD\|370150	pfam08845, SymE_toxin, Toxin SymE, type I toxin-antitoxin system. SymE (SOS-induced yjiW gene with similarity to MazE ) is an SOS-induced toxin. It inhibits cell growth, decreases protein synthesis and increases RNA degradation. It may play a role in the recycling of RNAs damaged under SOS response-inducing conditions. It is predicted to have an AbrB fold, similar to that of the antitoxin MazE. Its translation is repressed by the antisense RNA SymR, which acts as an antitoxin.	4.28867e-11
NZ_CP014505.1\|WP_061999593.1\|1872406_1873807_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	7.219e-157
NZ_CP014505.1\|WP_061999582.1\|1857608_1860005_+\|polysaccharide-biosynthesis-tyrosine-autokinase	gnl\|CDD\|183173	PRK11519, PRK11519, tyrosine-protein kinase Wzc.	2.83389e-156
NZ_CP014505.1\|WP_061999596.1\|1878893_1880066_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340833	cd03804, GT4_WbaZ-like, mannosyltransferase WbaZ and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. WbaZ in Salmonella enterica has been shown to possess mannosyltransferase activity.	0

>NZ_CP014505.1|WP_155524201.1|1867781_1868033_-|hypothetical-protein
MNQGRLRSVLTRMRTMVPVAKSASAQAKSEAAINQAAPKVVAVPPRATWFATRKSTFAALCLFGLQPLLIDVAHAQATLSKAV
>NZ_CP014505.1|WP_061999589.1|1866489_1867755_-|hemagglutinin-repeat-containing-protein
MQAGSTLHVTGSDIVAAQDVTGVAANVVIDGSQTNRHHDETHESRTTGFSITASAPVIDAAQNTLRQASSGARSQDDRASALHVMAAASGAYDAAGAANGAAQDLAAGKMPDAKLELSWGSSSSKSTFTQDSSNTTGSTVKAGGTAAFVATGGNVDIAGSDVNASNVILSAANQVNLTNSTDTDSTRSTNESKSTGVGVSVGTGGIGVDASMSKAHGNANSDSTASNNTHINAANNATIISGGDTNLIGANVNGKSVSMDVGGNLNIAPTQDTSTSAAKQDSTGGGIAISAGGASGSFNHSSGRANGNYAGVTEQTVIHAGTDGFDITVKGGTDLKGGLIASDATPDKNTLTTGTLTFSDIQNSSSYDAKSSGFGGGASTGNGGNTYATHGNTSGSNTGGIAPMLTRRLKSKINCGSWARR
>NZ_CP014505.1|WP_061999588.1|1865872_1866505_-|hypothetical-protein
MGATVNGTVESGAAVTLIGQAPSDASAGWMSAGQTADGKPIRTQTAVAADPQLQAYIVKNYASAAPGAVPSTVSGYTASSTQPQIGPQYDSSGSTGSVCPRGDCGVVNTTINTTVNPPTRAQLATATDLGSTAMGVAAIWLPPPFDVGALVGAAGMKSANYALSPPSSSSILYDIATTFAGLAIPQGRGVQTLFTFGTSAAQPYVIPNQK
>NZ_CP014505.1|WP_061999587.1|1865593_1865839_-|hypothetical-protein
MRDQPNNDNLTSFEKRAYRLFSYVALAGVVACILVVRQPHTEEAKLVINIVGFVCLIIGVIFGWGYNKDIRVLDLRKYNGS
>NZ_CP014505.1|WP_082778779.1|1865271_1865499_+|type-I-addiction-module-toxin,-SymE-family
MVDANLKSSSTSTERFMAYERATRWTVYPPHRPPPTQRPIPRIRLMGRWLEQAGFKPDGRVCIHVQEGPLIITPA
>NZ_CP014505.1|WP_155524199.1|1864150_1865134_-|hypothetical-protein
MASISAGKLNALSDSIANSSPTGNADIDRTLGNIVANVIATGAGGAVGGNAGAIAGYNDDRFNRQLHLDERQWATRNAMDFAAVYKAQTGQDLTPDQAQSMLLANGYRLVDAAASKGPGGDAVAVAYISQYAGTLFSATSAEYNSPFMGGNKNGSLTPEQLTMPGHEAHPQIGVAVGAGLGLVALGAVAPTVATAWGAGTVYDFVGDAISHGMGLSPDAPNFTKSFTVGGVTGAMAPLLPPLTTLGTGVAGKVAMGGYNVAVGGVRAFGATAITNSSSNPMMSGALGAGAGIIGSGFQYALPGPVGAFMQVLLGPAQTAIESQGKKK
>NZ_CP014505.1|WP_082778778.1|1863517_1863808_-|hypothetical-protein
MFSKENPEFRRPLVGPRRSAWPYRFAELFFGTIAKATMVIAVLLLVVLNLLSGGAGMDLPTTGKGWRNLLMLILAILIIVAIGIYFFSPMMSHPRP
>NZ_CP014505.1|WP_061999584.1|1863266_1863482_-|hypothetical-protein
MNVDRYNRQLHPQEKTTAQKIAATAKAQGLTNVDGSAITIAQIENSMRGASSSQYGETAVNRPGFDGGSNS
>NZ_CP014505.1|WP_086384065.1|1860982_1861276_+|hypothetical-protein
MEYIAIALEVALGQDIEKSFAYIVSLAFQAGCVARQQARAMARKPMSILADKRIDRRSACPLGCQELKTLSCNRINQCLKCRVEHTYCLHSRTALRV
>NZ_CP014505.1|WP_061999582.1|1857608_1860005_+|polysaccharide-biosynthesis-tyrosine-autokinase
MSTYEMLEHSPAQAKDEEFVLRDLVRMITDQIWWVLGIALGILLAAVLYAKLSTPIYSADALVQVDTPNTSSTSNNQGSLSAALTPSGGSLHADSEIEIIKSRTVIEPVVDQFNLNFSTESNVMPFIGRITPLFARRGHPLPAVLGLDTYAWGGEEFKVDSITVPAMLQDQRLTLRALGQGRYALLDAQNHELLQGLAGNMAKGNGITLLVSQLVARPGTEFFVTRASQLEAVQAFGSGMQVAEKGKDTGIIQISYSGSQPLYITQVANALAASYLKQRTERAQEEANRMLTFLNNELPRVRDELHASETALAQYQTAAGSFQPTQEAQTYLSGGLDYERQIAALRMQRVQLLQRFTDGADEVRAVDAQLAALNVEKSRFDNQFKTLPGSERQAVSLQREAKVNSEIYVALLNKTQELSISRAGTVGNVHIVDMALVPSQPVKPKAALIIAAGGLLGVIAGVVFAFVRRSFFAGVDDPELVERRFNLPIFGAIPFSAEQARLDRVRLDRPMALPSSSAKGGMKRLGTQSVGDSMGTTLGLSTKTPEAMALQNATVLPAANTGKQPLLSTTHPFDTSIEGLRGLRATLQFALVDAPNRVIAITSPAPSDGKSFLAANLAALLAESGKRVLLIDADLRRGRLAHYMGKSSNGGLTELLTGQTDFEMAARETGVNGLHFIGSGAHPPNPSEILTSSRFATLLQAFEKQFDLVIVDTPPLLAVPDAAVIASLAGSTVLVMRSGAHSEKNIADALKKLKRARARVVGGVLNAMPAKSGGRKGTYDYAYAYTYSSDPAAVDVKH
>NZ_CP014505.1|WP_061999591.1|1869707_1870271_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MTTHFIDITLLPDPEFSQAHLFGALVAKLHRALVQLRTDDIGISFPEYSLRPRSLGRVLRLHGGEPALLGLMKHAWLQGMRDHVAVTAVGLVPAGATHQIVQRRQFKTNADRMRRRRMQRKGESMEQAAEAIPDSVERTPNLPYVQIRSASTGQPFCLFIEQVGVPAGALGPFNSYGLSQGASVPCF
>NZ_CP014505.1|WP_062000883.1|1870276_1871293_-|type-I-F-CRISPR-associated-protein-Csy3
MSEKLITASVLAFERKLDPSDAVFNAGNWDDRANAAAWPPIRLREKSVRGTISNRLKTKDQDPAKLDASITNPNLQTVDVATLPVEADTLKVQFTLRVLAGAGTPSACNSAAYRTRLLGAVNDYVGQHGFIELANRYAANLANGRFLWRNRIGAESVQVEVAQLRNGQPGQVWSFDALTQNLRALNELDENVKTLGGLIAEGLAGRMHVLLQVTAYVRLGCGQEVFPSQELILDKNDSKKSRTLYCVQDVAAMHSQKIGNAVRTIDTWYEDAQELGPIAVEPYGSVTTQGKAYRQPKQKQDFYTLLDDWLLKDQAPPLEQQHFVMAVLIRGGVFGATS
>NZ_CP014505.1|WP_061999592.1|1871330_1872410_-|type-I-F-CRISPR-associated-protein-Csy2
MSHSTKDVTTKALLVLPHLRVQNANAISSPLTHGFPSITAFTGLMWALQRKLTAAGLPLKLRQVGVICHHHEEQLTDGYVKTFRLTRNPVDRDGATAAIVEEGHIHLELTVMFQLTVPASQLLASGAGSTADQRAQMSEWAARVAEIVACMRIAGGTLLPTGSMPGRRTRAWMEPISEDEEAQALVFARWRYQWLPGYALVGRDDLLAERHRTMRDALPDATLLDAWLDAARFNFKPVPGDPSKSTPGNSKAEKQRWADPSKQKGDGWTVPIPVGYAALTKPLPAGAVANTRDASTPCVFVESVYSFGQWISPHRLNHVQEILWRPETDAAIGLYRCRSGYVHAGSATSLAGDDIPDFD
>NZ_CP014505.1|WP_061999593.1|1872406_1873807_-|type-I-F-CRISPR-associated-protein-Csy1
MSESPVTPNRRRFRAAIDAFLHDRLQAKLDKLPPDDPKRSELIAEHQRGPWLENAAVRVKQIQAVTHSLKPIHPEARGTNLFVSPASLSPLAELGSHALGSVFAMDVVGNAAALDVYKLLKIEASGTTLLQALSANDDDALQALSTDPLKASALRDAFVSLTAEREGQPTSHVRAKQVYWLVGDDANDDAQYYLLSPLYPTSLAQAVHEEIQDARFGDANKAARQARRDGVPHDGVYREYRGLAARHLGGTKPQNISQLNSERRGINYLLASLPPVWQKQRNFRPVNAKSIFDRAFGARPPVRAIVRDLTAFLLSNPRPNEDTRKRVKSLVNSLVDELVIYGAELSHQPAGWTTESLFDDLADEEKLWLDPYRADLLEETAFASRWQFMDWPALIAQRFGNWLNGQLRDKLPKVEYIESKEWRRICMGEDGSWIQELRRIRDLQDAPGYIPVRKTHDELTVLRKNK
>NZ_CP014505.1|WP_061999594.1|1874207_1877750_-|type-I-F-CRISPR-associated-helicase-Cas3
MNVLFVSQCTKRALAETRRILDQFAERRGERTWQTPITQAGLDTVRKLLRQNARKNTAVACHWICGRDRSELLWIVGDARRFNSEGAVPTNATAKNVLRADDENTWHNLPTITAMIALAALLHDLGKATQAFQTRLRGHGSRERNHYRHEWVSVRLFQAFVGEARDDASWLSRLAACADAQMDGKTFEAQWLDHRAGRLLRDGMDEQAALSLPFATMPPLAQAAAWLVLTHHRLPCRPVSQKECSTDADDDQPKSRWRRFGAHLDSIETYQLRGLFEKISADWNEPCEDVPGATVARYWRFPSGLPVVLAPWRKQAARYACKLLELSRPEVSRSALDDPFLMHVSRLCLMLADHHYSSIEDEPRRKRFRNPHYPLYANTLGNRSIERLQQTGAGPFFNQTLDEHLLGVQAHASLIARSLPSLVRSLPALQNHRGLRKRSANARFHWQDKAADLAVGVRPRAAEHGAFIVNMASTGCGKTLGNARIMNALAEPQRGMRCVFAIGLRTLTMQTGRSFQHDLGLNDEQLAIKVGGAASRAVFDYWEMQAEATGSASAQALLDEGGQVMFEGNDQHPLLERLTDDAQVRSLIAAPVLVCTVDHLTPATESTRGGRQIAPMLRLMTGDLVLDEPDDFDMDDLPALMRLVHWAGLLGARVLLSSATLPPALVRGLYLAYLDGRSHYQRNRGERPTEPPRVACLWIDEFAQSHADCGDGESFADAHEIFVNKRCAQLARAEVRRKAGLVQLPAAWQSMQKQTRREAFACMALERGWALHQDEQNHCVDSGSGKRVSFGLVRMANIGPLFDVAIAMYRQGAPVPNVRVHLCVYHSQFPLLARSHIEQQLDAVFDRRPGKTGDDPALLHPSVRALLDAHPEPDQMFVVLASPVCEVGRDWDADWAIVEPSSMRSLIQLAGRVRRHRSGAVARRNMLVFDTNLRNFERSSDKDAVFCMPGFEKNSTSSLGKHERTEQHDSLTHFHLQSHRLTDLLPDGGSDWPIDARPRIRQGEKLQPKGSLIDLEHARMRDTMLPRDETSKLITPVKRDATRHWYVRDADEGQRILLTGLLPQLQRFRDDPQKRDDVVLLPTEDEDELRMHRVIDRRERGQTPYADIRHLLRPVRDCSPDGRGIGPWCYVDLMDLLRQWADSQGQSLYDSAKQVATASLPASESDQGWLFHPVLGFKPA
>NZ_CP014505.1|WP_061999595.1|1877746_1878739_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MESIQASDLKNILHSKRANLYYLEHCRVLLNGGRVEYVTDAGKQSLYWNIPIANTTSILLGTGTSITQAAMRELAKAGVLVGFCGGGGTPLFSATEVDVEVAWMLPQSEYRPTEYLQAWTRFWFDDALRLHAAKQLQVFRLQRLREAWRARKLFDAGFKVDVQRVQALTASFSKRIADAHDLTALLTDEARLTKALFKLAVEAVDYGDFTRAKRGTGTDAANRYLDHGNYLGYGLGATATWVLGLPHGLAVLHGKTRRGGLVFDAADLVKDAVILPQAFISAMRGDDEQQFRRQCIEALTRDESLDFMIDTLKTIALDTAGLVTAARAET
>NZ_CP014505.1|WP_061999596.1|1878893_1880066_-|glycosyltransferase-family-4-protein
MKVAIVHDWLVVSGGAEKVLEQMIACFPQADIFSLVDFLEDRSIVHNKPVKTSFIQRLPYAEKKYRGYLPLMPLAIEQFDLSSYDLILSSSHAVAKGVLVGPDQTHVSYVHSPIRYAWDLQHQYLREARLERGPRSWVARMLLHYLRNWDARSANGVDRIIANSQFVARRIMKSYRRESAVIAPPVDVQAFEVGSEKGDFYLTASRMVPYKRIDMIVEAFASMPDRKLVVIGDGPQMDLVRAKATPNVSVLGYQTFDVLKDHMQRAKAFVYAAEEDFGIAIVEAQACGTPVIAFGKGGALESVVPLGMPGATGIHFPQQTAASLCDAVERFEDSPHAFSAQACRKNAERFSAADFRRKFIVEVLNTMAKANPGADRDVSAMAARAFVKAA
>NZ_CP014505.1|WP_061999597.1|1880273_1881647_+|glycosyltransferase-family-4-protein
MPTKSAASLSIPANTLLRDQGLAPAAAARDTSHMRADPPSQVQGEPKILFIDQSGQLGGAEICLLPLAVRCTPRSEVLLLSDGPFRDRLRAEGVTVSVESDARIQGIKKERMKFGTLAALPGILRQVRMIAERAKPFDMVFLNTQKALILGAFSRALHGKPTVWHVHDIVSREHFGRLHLTLIKWAVKVGVDHVVANSRASADALIKLTGLPRSAVPVVHNGVDMTRFGDDASQASAVIEQRRTALGLPRDAFLVGLFGRFTQWKGQHVAIDAIARVPDAHLVLVGDALFGETAYAQGLRTQAEALGITDRVHFAGFQHDVASWMKAMDVIVHASTQPEPFGLVIIEAMAAGKPVIASNGGAVPEIVRHGENGMIIEPGDASKLAVAISTLQREPEMAKRIAAQGHADAGQHFSIDRYLQQMTRVLFDIATLASRNDAPESTNVIENAPASEAGLTR
>NZ_CP014505.1|WP_061999598.1|1881721_1881958_-|hypothetical-protein
MHNNLRKTLDASYIRLRSMEPSPTAFAGNYALCLGVIMGGQTCRGMTMKEAESERAYLAMLAAMYEIKLGVPGNFSTR
>NZ_CP014505.1|WP_061999599.1|1882271_1882967_-|ribose-5-phosphate-isomerase-RpiA
MTQDELKQLVAAEAAAYVHANVPEGAVIGVGTGTTANCFIDAIASTKSRYRGAVSSSLATTARLEAHGFQVLELNEIESLPVYVDGADEIDAHGAMIKGGGGALTREKIVASVADVFVCIADGSKRVDVLGNFALPIEVVPMARTAIGRRVIALGGVPVLRVNTDGSPFITDNGNEIIDVKALKITDPIALEATVNGWAGVVTVGLFAARGANVCLLGTAGGVERIDYIAR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014505_1	1.29\|1869218\|32\|NZ_CP014505\|CRT	1869218-1869249	32	NZ_CP020926	Sphingobium yanoikuyae strain SHJ plasmid pSES220, complete sequence	164147-164178	5	0.844
NZ_CP014505_1	1.29\|1869218\|32\|NZ_CP014505\|CRT	1869218-1869249	32	NC_009507	Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence	195592-195623	5	0.844
NZ_CP014505_1	1.12\|1869217\|33\|NZ_CP014505\|CRISPRCasFinder,PILER-CR	1869217-1869249	33	NZ_CP020926	Sphingobium yanoikuyae strain SHJ plasmid pSES220, complete sequence	164146-164178	6	0.818
NZ_CP014505_1	1.12\|1869217\|33\|NZ_CP014505\|CRISPRCasFinder,PILER-CR	1869217-1869249	33	NC_009507	Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence	195591-195623	6	0.818
NZ_CP014505_1	1.28\|1869158\|32\|NZ_CP014505\|CRT	1869158-1869189	32	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	528407-528438	6	0.812
NZ_CP014505_1	1.29\|1869218\|32\|NZ_CP014505\|CRT	1869218-1869249	32	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	271881-271912	7	0.781
NZ_CP014505_1	1.29\|1869218\|32\|NZ_CP014505\|CRT	1869218-1869249	32	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	64219-64250	7	0.781
NZ_CP014505_1	1.7\|1868916\|33\|NZ_CP014505\|CRISPRCasFinder,PILER-CR	1868916-1868948	33	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	1687355-1687387	8	0.758
NZ_CP014505_1	1.12\|1869217\|33\|NZ_CP014505\|CRISPRCasFinder,PILER-CR	1869217-1869249	33	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	271880-271912	8	0.758
NZ_CP014505_1	1.12\|1869217\|33\|NZ_CP014505\|CRISPRCasFinder,PILER-CR	1869217-1869249	33	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	64218-64250	8	0.758
NZ_CP014505_1	1.12\|1869217\|33\|NZ_CP014505\|CRISPRCasFinder,PILER-CR	1869217-1869249	33	NZ_CP041205	Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence	299196-299228	8	0.758
NZ_CP014505_1	1.12\|1869217\|33\|NZ_CP014505\|CRISPRCasFinder,PILER-CR	1869217-1869249	33	NC_008758	Polaromonas naphthalenivorans CJ2 plasmid pPNAP02, complete sequence	44900-44932	8	0.758
NZ_CP014505_1	1.24\|1868917\|32\|NZ_CP014505\|CRT	1868917-1868948	32	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	1687355-1687386	8	0.75
NZ_CP014505_1	1.28\|1869158\|32\|NZ_CP014505\|CRT	1869158-1869189	32	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	533774-533805	8	0.75
NZ_CP014505_1	1.28\|1869158\|32\|NZ_CP014505\|CRT	1869158-1869189	32	NZ_CP017427	Methylobacterium sp. XJLW plasmid unnamed1, complete sequence	21441-21472	8	0.75
NZ_CP014505_1	1.29\|1869218\|32\|NZ_CP014505\|CRT	1869218-1869249	32	NZ_CP041205	Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence	299197-299228	8	0.75
NZ_CP014505_1	1.29\|1869218\|32\|NZ_CP014505\|CRT	1869218-1869249	32	NC_008758	Polaromonas naphthalenivorans CJ2 plasmid pPNAP02, complete sequence	44901-44932	8	0.75
NZ_CP014505_1	1.2\|1868614\|33\|NZ_CP014505\|CRISPRCasFinder	1868614-1868646	33	NZ_CP015522	Sphingomonas sp. NIC1 plasmid unnamed1, complete sequence	50493-50525	9	0.727
NZ_CP014505_1	1.19\|1868615\|32\|NZ_CP014505\|CRT	1868615-1868646	32	NZ_CP015522	Sphingomonas sp. NIC1 plasmid unnamed1, complete sequence	50494-50525	9	0.719
NZ_CP014505_1	1.24\|1868917\|32\|NZ_CP014505\|CRT	1868917-1868948	32	NZ_CP024427	Paracoccus yeei strain TT13 plasmid pTT13-5, complete sequence	21565-21596	9	0.719
NZ_CP014505_1	1.24\|1868917\|32\|NZ_CP014505\|CRT	1868917-1868948	32	NZ_CP020443	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed3, complete sequence	7868-7899	9	0.719
NZ_CP014505_1	1.24\|1868917\|32\|NZ_CP014505\|CRT	1868917-1868948	32	NZ_CP044079	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence	332260-332291	9	0.719
NZ_CP014505_1	1.24\|1868917\|32\|NZ_CP014505\|CRT	1868917-1868948	32	NZ_CP031079	Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence	451578-451609	9	0.719
NZ_CP014505_1	1.25\|1868977\|32\|NZ_CP014505\|CRT	1868977-1869008	32	NZ_CP015851	Ralstonia solanacearum strain YC40-M plasmid, complete sequence	11698-11729	9	0.719
NZ_CP014505_1	1.28\|1869158\|32\|NZ_CP014505\|CRT	1869158-1869189	32	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	1693997-1694028	9	0.719
NZ_CP014505_1	1.28\|1869158\|32\|NZ_CP014505\|CRT	1869158-1869189	32	NZ_CP032313	Pannonibacter phragmitetus BB plasmid p.BB_1, complete sequence	90422-90453	9	0.719
NZ_CP014505_1	1.34\|1869518\|32\|NZ_CP014505\|CRT	1869518-1869549	32	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	545161-545192	9	0.719
NZ_CP014505_1	1.8\|1868976\|33\|NZ_CP014505\|CRISPRCasFinder,PILER-CR	1868976-1869008	33	NZ_CP015851	Ralstonia solanacearum strain YC40-M plasmid, complete sequence	11698-11730	10	0.697
NZ_CP014505_1	1.29\|1869218\|32\|NZ_CP014505\|CRT	1869218-1869249	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1263331-1263362	10	0.688
NZ_CP014505_1	1.29\|1869218\|32\|NZ_CP014505\|CRT	1869218-1869249	32	NZ_LR134450	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 8, complete sequence	176163-176194	10	0.688
NZ_CP014505_1	1.29\|1869218\|32\|NZ_CP014505\|CRT	1869218-1869249	32	NZ_CP025613	Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence	719874-719905	10	0.688
NZ_CP014505_1	1.30\|1869278\|32\|NZ_CP014505\|CRT	1869278-1869309	32	NZ_CP043507	Acetobacter sp. KACC 21233 plasmid unnamed1, complete sequence	4281-4312	10	0.688
NZ_CP014505_1	1.33\|1869458\|32\|NZ_CP014505\|CRT	1869458-1869489	32	NZ_LR723676	Rhizobium sp. TCK plasmid 2	49882-49913	10	0.688

1. spacer 1.29|1869218|32|NZ_CP014505|CRT matches to NZ_CP020926 (Sphingobium yanoikuyae strain SHJ plasmid pSES220, complete sequence) position: , mismatch: 5, identity: 0.844

atgaagatcccgcgcgcgccgagcgtcatcga-	CRISPR spacer
atgaaggtcgcgcgcgcgccgagc-tgatcggc	Protospacer
******.** ************** * ****.

2. spacer 1.29|1869218|32|NZ_CP014505|CRT matches to NC_009507 (Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence) position: , mismatch: 5, identity: 0.844

atgaagatcccgcgcgcgccgagcgtcatcga-	CRISPR spacer
atgaaggtcgcgcgcgcgccgagc-tgatcggc	Protospacer
******.** ************** * ****.

3. spacer 1.12|1869217|33|NZ_CP014505|CRISPRCasFinder,PILER-CR matches to NZ_CP020926 (Sphingobium yanoikuyae strain SHJ plasmid pSES220, complete sequence) position: , mismatch: 6, identity: 0.818

catgaagatcccgcgcgcgccgagcgtcatcga-	CRISPR spacer
gatgaaggtcgcgcgcgcgccgagc-tgatcggc	Protospacer
 ******.** ************** * ****.

4. spacer 1.12|1869217|33|NZ_CP014505|CRISPRCasFinder,PILER-CR matches to NC_009507 (Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence) position: , mismatch: 6, identity: 0.818

catgaagatcccgcgcgcgccgagcgtcatcga-	CRISPR spacer
gatgaaggtcgcgcgcgcgccgagc-tgatcggc	Protospacer
 ******.** ************** * ****.

5. spacer 1.28|1869158|32|NZ_CP014505|CRT matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 6, identity: 0.812

cgatgacttcgccgctttgcgg---gtccggctcg	CRISPR spacer
cgaagccttcgccgctttgcgggacgcccggc---	Protospacer
*** * ****************   *.*****

6. spacer 1.29|1869218|32|NZ_CP014505|CRT matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

atgaagatcccgcgcgcgccgagcgtcatcga	CRISPR spacer
gcgaagatgtcgcgcgcgccgagcgtctgcgc	Protospacer
..****** .*****************  **

7. spacer 1.29|1869218|32|NZ_CP014505|CRT matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 7, identity: 0.781

atgaagatcccgcgcgcgccgagcgtcatcga	CRISPR spacer
gcgaagatgtcgcgcgcgccgagcgtctgcgc	Protospacer
..****** .*****************  **

8. spacer 1.7|1868916|33|NZ_CP014505|CRISPRCasFinder,PILER-CR matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 8, identity: 0.758

catcatcggccgctgctttgcgctgttgaggat	CRISPR spacer
cgttatcggcctcggctttgcgctgttgtgctg	Protospacer
*.*.******* * ************** *

9. spacer 1.12|1869217|33|NZ_CP014505|CRISPRCasFinder,PILER-CR matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.758

catgaagatcccgcgcgcgccgagcgtcatcga	CRISPR spacer
ggcgaagatgtcgcgcgcgccgagcgtctgcgc	Protospacer
 ..****** .*****************  **

10. spacer 1.12|1869217|33|NZ_CP014505|CRISPRCasFinder,PILER-CR matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 8, identity: 0.758

catgaagatcccgcgcgcgccgagcgtcatcga	CRISPR spacer
ggcgaagatgtcgcgcgcgccgagcgtctgcgc	Protospacer
 ..****** .*****************  **

11. spacer 1.12|1869217|33|NZ_CP014505|CRISPRCasFinder,PILER-CR matches to NZ_CP041205 (Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence) position: , mismatch: 8, identity: 0.758

catgaagatcccgcgcgcgccgagcgtcatcga	CRISPR spacer
cttgaagatgccgagcgcgccgagcgagatgac	Protospacer
* ******* *** ************  ** .

12. spacer 1.12|1869217|33|NZ_CP014505|CRISPRCasFinder,PILER-CR matches to NC_008758 (Polaromonas naphthalenivorans CJ2 plasmid pPNAP02, complete sequence) position: , mismatch: 8, identity: 0.758

catgaagatcccgcgcgcgccgagcgtcatcga	CRISPR spacer
cgcccaaagcccgcgcgcgcagcgcgtcatcga	Protospacer
*..  *.* *********** * **********

13. spacer 1.24|1868917|32|NZ_CP014505|CRT matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 8, identity: 0.75

atcatcggccgctgctttgcgctgttgaggat	CRISPR spacer
gttatcggcctcggctttgcgctgttgtgctg	Protospacer
.*.******* * ************** *

14. spacer 1.28|1869158|32|NZ_CP014505|CRT matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 8, identity: 0.75

cgatgacttcgccgctttgcgggtccggctcg	CRISPR spacer
cgatgccttcgccgcgttgcgggacggaatga	Protospacer
***** ********* ******* * *. * .

15. spacer 1.28|1869158|32|NZ_CP014505|CRT matches to NZ_CP017427 (Methylobacterium sp. XJLW plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cgatgactt-cgccgctttgcgggtccggctcg	CRISPR spacer
-ggcgccccgcgccgcgatgcgggtccggctcg	Protospacer
 *..* *.. ******  ***************

16. spacer 1.29|1869218|32|NZ_CP014505|CRT matches to NZ_CP041205 (Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence) position: , mismatch: 8, identity: 0.75

atgaagatcccgcgcgcgccgagcgtcatcga	CRISPR spacer
ttgaagatgccgagcgcgccgagcgagatgac	Protospacer
 ******* *** ************  ** .

17. spacer 1.29|1869218|32|NZ_CP014505|CRT matches to NC_008758 (Polaromonas naphthalenivorans CJ2 plasmid pPNAP02, complete sequence) position: , mismatch: 8, identity: 0.75

atgaagatcccgcgcgcgccgagcgtcatcga	CRISPR spacer
gcccaaagcccgcgcgcgcagcgcgtcatcga	Protospacer
..  *.* *********** * **********

18. spacer 1.2|1868614|33|NZ_CP014505|CRISPRCasFinder matches to NZ_CP015522 (Sphingomonas sp. NIC1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

cctcacgcatcgcatcaagcgcgt-tgttagccc	CRISPR spacer
cctcaggcaacgcatcaagcgcgtgcagcaggt-	Protospacer
***** *** ************** .. .** .

19. spacer 1.19|1868615|32|NZ_CP014505|CRT matches to NZ_CP015522 (Sphingomonas sp. NIC1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ctcacgcatcgcatcaagcgcgt-tgttagccc	CRISPR spacer
ctcaggcaacgcatcaagcgcgtgcagcaggt-	Protospacer
**** *** ************** .. .** .

20. spacer 1.24|1868917|32|NZ_CP014505|CRT matches to NZ_CP024427 (Paracoccus yeei strain TT13 plasmid pTT13-5, complete sequence) position: , mismatch: 9, identity: 0.719

atcatcggccgctgctttgcgctgttgaggat	CRISPR spacer
ttccacggctgctgctttgcgctgctgaacgg	Protospacer
 **  ****.**************.***. .

21. spacer 1.24|1868917|32|NZ_CP014505|CRT matches to NZ_CP020443 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

atcatcggccgctgctttgcgctgttgaggat	CRISPR spacer
ttccacggctgctgctttgcgctgctgaacgg	Protospacer
 **  ****.**************.***. .

22. spacer 1.24|1868917|32|NZ_CP014505|CRT matches to NZ_CP044079 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

atcatcggccgctgctttgcgctgttgaggat	CRISPR spacer
ttccacggctgctgctttgcgctgctgaacgg	Protospacer
 **  ****.**************.***. .

23. spacer 1.24|1868917|32|NZ_CP014505|CRT matches to NZ_CP031079 (Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence) position: , mismatch: 9, identity: 0.719

atcatcggccgctgctttgcgctgttgaggat	CRISPR spacer
ttccacggctgctgctttgcgctgctgaacgg	Protospacer
 **  ****.**************.***. .

24. spacer 1.25|1868977|32|NZ_CP014505|CRT matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

tgtacgtgcgcgcctctggtggccccgtcatc	CRISPR spacer
gcgacgtgcgcgcgtatggtggccccggccat	Protospacer
   ********** * *********** *  .

25. spacer 1.28|1869158|32|NZ_CP014505|CRT matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 9, identity: 0.719

cgatgacttcgccgctttgcgggtccggctcg	CRISPR spacer
ccggcacttcgccccattgcgggtccgggcgg	Protospacer
* .  ******** * ************ . *

26. spacer 1.28|1869158|32|NZ_CP014505|CRT matches to NZ_CP032313 (Pannonibacter phragmitetus BB plasmid p.BB_1, complete sequence) position: , mismatch: 9, identity: 0.719

cgatgacttcgccgctttgcgggtccggctcg	CRISPR spacer
gcgtgacttcgccggtttgcgtgtccaccgcc	Protospacer
  .*********** ****** ****. * *

27. spacer 1.34|1869518|32|NZ_CP014505|CRT matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 9, identity: 0.719

tctggcggcgctttctcgtccgcgctccactc	CRISPR spacer
ctttacggcgctttctcggccgcgctcctgat	Protospacer
..* .************* *********   .

28. spacer 1.8|1868976|33|NZ_CP014505|CRISPRCasFinder,PILER-CR matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 10, identity: 0.697

ttgtacgtgcgcgcctctggtggccccgtcatc	CRISPR spacer
ggcgacgtgcgcgcgtatggtggccccggccat	Protospacer
    ********** * *********** *  .

29. spacer 1.29|1869218|32|NZ_CP014505|CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

atgaagatcccgcgcgcgccgagcgtcatcga	CRISPR spacer
gcgccgatcccgcgcgcgccgcccgtcacgac	Protospacer
..*  ****************  *****. .

30. spacer 1.29|1869218|32|NZ_CP014505|CRT matches to NZ_LR134450 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 8, complete sequence) position: , mismatch: 10, identity: 0.688

atgaagatcccgcgcgcgccgagcgtcatcga	CRISPR spacer
tcgtcgatcgcgcgcgcggcgagcgtcaggcc	Protospacer
 .*  **** ******** *********

31. spacer 1.29|1869218|32|NZ_CP014505|CRT matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

atgaagatcccgcgcgcgccgagcgtcatcga	CRISPR spacer
actggccacccgcgcgcgcagcgcgtcatcgg	Protospacer
*. ..   *********** * *********.

32. spacer 1.30|1869278|32|NZ_CP014505|CRT matches to NZ_CP043507 (Acetobacter sp. KACC 21233 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cgtacgacggccttcagtggacgacctgggtt	CRISPR spacer
tgccatccggccttccgtggacgaccagggca	Protospacer
.*.    ******** ********** ***.

33. spacer 1.33|1869458|32|NZ_CP014505|CRT matches to NZ_LR723676 (Rhizobium sp. TCK plasmid 2) position: , mismatch: 10, identity: 0.688

gtgaatccattgcgcagcacgagcacgcatat	CRISPR spacer
atctcgccatcgcgcaggacgagcacgcagtc	Protospacer
.*    ****.****** ***********  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

438360 : 500194

Burkholderia_virus(50.0%)

transposase,protease,integrase

attL 438171:438230|attR 500517:500576

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
438171:438230	attL	NA	NA	NA	NA
WP_062000703.1\|438360_439710_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_082778854.1\|440147_440756_+	DUF1819 family protein	NA	NA	NA	NA
WP_061998564.1\|440752_441331_+	DUF1788 domain-containing protein	NA	NA	NA	NA
WP_061998567.1\|448533_451158_+	BREX-1 system phosphatase PglZ type A	NA	NA	NA	NA
WP_172811909.1\|451166_453266_+\|protease	protease Lon-related BREX system protein BrxL	NA	NA	NA	NA
WP_061998568.1\|453496_454843_+\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	1.8e-07	22.8
WP_155524153.1\|455238_455847_+	hypothetical protein	NA	NA	NA	NA
WP_061998570.1\|455904_456654_+	hypothetical protein	NA	NA	NA	NA
WP_061998571.1\|457070_457874_+	hypothetical protein	NA	NA	NA	NA
WP_061998572.1\|457870_458788_+	hypothetical protein	NA	NA	NA	NA
WP_061998573.1\|458904_459282_+	hypothetical protein	NA	NA	NA	NA
WP_061998574.1\|459408_460755_+\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	8.3e-08	22.8
WP_155524154.1\|461363_462035_+	hypothetical protein	NA	NA	NA	NA
WP_172811910.1\|462671_463448_-	HNH endonuclease	NA	NA	NA	NA
WP_155524155.1\|463481_463844_-	hypothetical protein	NA	NA	NA	NA
WP_061998579.1\|463927_464908_-	hypothetical protein	NA	NA	NA	NA
WP_061998580.1\|465016_465265_+	hypothetical protein	NA	NA	NA	NA
WP_155524156.1\|465621_465924_+	hypothetical protein	NA	NA	NA	NA
WP_155524157.1\|466474_466804_+	hypothetical protein	NA	NA	NA	NA
WP_172811911.1\|466893_467046_+	hypothetical protein	NA	NA	NA	NA
WP_061998583.1\|467261_467894_+	hypothetical protein	NA	NA	NA	NA
WP_061998584.1\|467982_468264_+	hypothetical protein	NA	NA	NA	NA
WP_155524158.1\|468394_468532_+	hypothetical protein	NA	NA	NA	NA
WP_061998585.1\|468553_468862_-	hypothetical protein	NA	NA	NA	NA
WP_061998586.1\|468861_469122_-	hypothetical protein	NA	NA	NA	NA
WP_155524159.1\|470627_470768_+	zinc-ribbon domain-containing protein	NA	NA	NA	NA
WP_082778725.1\|470746_471022_+	NINE protein	NA	NA	NA	NA
WP_061998590.1\|472305_472605_-	hypothetical protein	NA	NA	NA	NA
WP_172811912.1\|472787_473075_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_172811913.1\|473079_473418_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_061998593.1\|473884_474250_-	DUF4145 domain-containing protein	NA	NA	NA	NA
WP_061998595.1\|474546_474816_-	hypothetical protein	NA	NA	NA	NA
WP_061998596.1\|475305_476034_+	hypothetical protein	NA	NA	NA	NA
WP_062000707.1\|476115_477636_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_061998597.1\|477628_478423_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	5.4e-31	33.3
WP_082778727.1\|478428_479301_+	hypothetical protein	A0A0U4J920	Pseudomonas_phage	8.6e-14	30.9
WP_172811914.1\|479937_480243_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_172811915.1\|480456_480669_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_061998601.1\|481227_482037_-	hypothetical protein	NA	NA	NA	NA
WP_061998602.1\|482792_483434_-	hypothetical protein	NA	NA	NA	NA
WP_061998604.1\|484213_485788_+	recombinase family protein	NA	NA	NA	NA
WP_061998605.1\|485780_486701_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_061998606.1\|486697_487597_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_061998607.1\|489732_490614_+	hypothetical protein	NA	NA	NA	NA
WP_061998608.1\|490982_491378_-	hypothetical protein	NA	NA	NA	NA
WP_061998611.1\|492675_493104_+	hypothetical protein	NA	NA	NA	NA
WP_061998612.1\|493663_493984_+	hypothetical protein	NA	NA	NA	NA
WP_155524162.1\|494022_494193_+	hypothetical protein	NA	NA	NA	NA
WP_155524163.1\|494227_494467_+	hypothetical protein	NA	NA	NA	NA
WP_061998614.1\|494463_494652_+	hypothetical protein	NA	NA	NA	NA
WP_082778731.1\|495978_497229_+	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_061998616.1\|497252_498281_+	hypothetical protein	NA	NA	NA	NA
WP_172811916.1\|498916_500194_-\|integrase	site-specific integrase	NA	NA	NA	NA
500517:500576	attR	NA	NA	NA	NA

DBSCAN-SWA_2

618920 : 628199

Streptococcus_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061998705.1\|618920_621026_-	elongation factor G	E4ZFJ7	Streptococcus_phage	1.5e-59	26.4
WP_062000726.1\|621319_621820_-	DUF192 domain-containing protein	A0A222YVT9	Synechococcus_phage	1.7e-14	40.8
WP_061998706.1\|622031_622226_-	hypothetical protein	NA	NA	NA	NA
WP_062000727.1\|622576_623146_-	pseudouridine synthase	NA	NA	NA	NA
WP_061998707.1\|623395_624649_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	2.6e-11	61.1
WP_035497884.1\|624788_624995_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.2e-22	76.5
WP_031359828.1\|625587_625902_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	3.4e-13	44.6
WP_061998708.1\|625898_628199_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.7e-167	41.0

DBSCAN-SWA_3

784224 : 830338

Salmonella_phage(11.11%)

holin,tail,transposase,integrase,plate

attL 780871:780887|attR 801380:801396

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
780871:780887	attL	NA	NA	NA	NA
WP_061998820.1\|784224_785241_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_061998821.1\|785243_785927_-	hypothetical protein	NA	NA	NA	NA
WP_082778861.1\|785934_786462_-\|plate	phage baseplate assembly protein	A0A192Y8K5	Salmonella_phage	1.3e-28	40.8
WP_061998822.1\|786491_787631_-	hypothetical protein	A0A2P9JZK3	Alteromonadaceae_phage	1.6e-12	22.8
WP_061998823.1\|787630_789421_-	hypothetical protein	NA	NA	NA	NA
WP_172811920.1\|789410_789698_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_061998825.1\|789742_790003_-	hypothetical protein	NA	NA	NA	NA
WP_061998826.1\|790002_790707_-	hypothetical protein	NA	NA	NA	NA
WP_155524175.1\|790718_791087_-	hypothetical protein	NA	NA	NA	NA
WP_061998828.1\|791090_791327_-	hypothetical protein	NA	NA	NA	NA
WP_155524176.1\|791407_791956_-	hypothetical protein	NA	NA	NA	NA
WP_061998830.1\|791930_792443_-	hypothetical protein	NA	NA	NA	NA
WP_061998832.1\|792744_795183_-	DUF3987 domain-containing protein	H9C0J7	Bdellovibrio_phage	2.0e-31	33.1
WP_061998833.1\|795179_795464_-	hypothetical protein	NA	NA	NA	NA
WP_061998834.1\|795460_795871_-	hypothetical protein	NA	NA	NA	NA
WP_061998835.1\|795863_796043_-	hypothetical protein	NA	NA	NA	NA
WP_082778740.1\|796564_796801_-	hypothetical protein	NA	NA	NA	NA
WP_082778741.1\|796797_797514_-	Rha family transcriptional regulator	A0A1B0VMK9	Pseudomonas_phage	5.0e-20	53.5
WP_061998837.1\|797510_797747_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_061998838.1\|797930_798557_-	hypothetical protein	NA	NA	NA	NA
WP_155524177.1\|798777_799913_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_061998841.1\|799946_801176_-\|integrase	site-specific integrase	A0A077KET4	Ralstonia_phage	2.6e-85	47.2
WP_061998842.1\|801577_802768_-	MFS transporter	NA	NA	NA	NA
801380:801396	attR	NA	NA	NA	NA
WP_061998843.1\|802807_804046_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA
WP_061998844.1\|804042_804693_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA
WP_061998845.1\|804652_805414_-	ribonuclease PH	NA	NA	NA	NA
WP_061998846.1\|805749_806685_+	YicC family protein	NA	NA	NA	NA
WP_061998847.1\|806691_807357_+	guanylate kinase	A0A218KC48	Bacillus_phage	9.7e-10	29.3
WP_031359151.1\|807413_807617_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_062000749.1\|807782_810137_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A291L9W9	Bordetella_phage	6.1e-14	33.0
WP_061998848.1\|810245_810737_+	DUF2591 family protein	NA	NA	NA	NA
WP_061998849.1\|811174_811735_+	transcription elongation factor GreB	NA	NA	NA	NA
WP_061998850.1\|811817_812972_-	porin	NA	NA	NA	NA
WP_062169562.1\|813544_813814_-	hypothetical protein	NA	NA	NA	NA
WP_061998851.1\|814085_815231_+	DNA polymerase III subunit epsilon	A0A1P8VWC8	Flavobacterium_phage	4.0e-11	31.4
WP_061998852.1\|815227_815833_-	chorismate mutase	NA	NA	NA	NA
WP_162916035.1\|816027_816174_-	hypothetical protein	NA	NA	NA	NA
WP_155524178.1\|816302_816446_+	hypothetical protein	NA	NA	NA	NA
WP_061998853.1\|816707_818258_-	TolC family protein	NA	NA	NA	NA
WP_061998854.1\|818244_820218_-	FUSC family protein	NA	NA	NA	NA
WP_061998855.1\|820198_821248_-	multidrug transporter subunit MdtN	NA	NA	NA	NA
WP_144022153.1\|821244_821565_-	hypothetical protein	NA	NA	NA	NA
WP_061998856.1\|821946_822972_-	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	5.3e-55	38.6
WP_061998857.1\|823124_825836_-	aminopeptidase N	NA	NA	NA	NA
WP_061998858.1\|826099_826837_+	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_061998859.1\|827031_827730_+	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_086381974.1\|827861_828545_+	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_061998861.1\|828541_829549_+	flippase-like domain-containing protein	NA	NA	NA	NA
WP_061998862.1\|829570_830338_+\|holin	phosphocholine cytidylyltransferase family protein	NA	NA	NA	NA

DBSCAN-SWA_4

1995884 : 2019900

Aeromonas_phage(23.81%)

plate,head,tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061999686.1\|1995884_1996319_+	hypothetical protein	A0A1W6DY69	Salmonella_phage	3.2e-22	39.4
WP_061999687.1\|1996315_1997785_+\|terminase	terminase	A0A2I7QQV3	Vibrio_phage	7.7e-108	45.1
WP_061999688.1\|1997830_1998664_+	hypothetical protein	NA	NA	NA	NA
WP_061999689.1\|1998682_2000275_+	DUF1073 domain-containing protein	A0A2R3UAL5	Myoviridae_environmental_samples	1.2e-74	36.1
WP_155524212.1\|2000271_2001081_+\|head	phage head morphogenesis protein	H9C0V1	Aeromonas_phage	4.0e-50	45.0
WP_061999690.1\|2001067_2002276_+	DUF2213 domain-containing protein	A0A219YCD3	Aeromonas_phage	3.4e-45	34.1
WP_061999691.1\|2002285_2002759_+	hypothetical protein	E2GLV4	Acinetobacter_phage	3.9e-21	41.5
WP_061999692.1\|2002755_2003766_+	hypothetical protein	Q8HAP7	Burkholderia_phage	3.7e-69	42.1
WP_061999693.1\|2003767_2004199_+	hypothetical protein	NA	NA	NA	NA
WP_061999694.1\|2004198_2004621_+	DUF4054 domain-containing protein	Q2NPC6	Xanthomonas_phage	2.3e-17	45.5
WP_061999695.1\|2004607_2005090_+	hypothetical protein	A0A190XCA2	Acinetobacter_phage	1.0e-21	40.3
WP_061999696.1\|2005086_2005491_+	hypothetical protein	A0A077KAW7	Edwardsiella_phage	3.5e-18	40.8
WP_155524213.1\|2005487_2006027_+	hypothetical protein	NA	NA	NA	NA
WP_061999699.1\|2006331_2007822_+	DUF3383 domain-containing protein	E2GLU1	Acinetobacter_phage	4.5e-71	39.8
WP_061999700.1\|2007834_2008263_+	hypothetical protein	NA	NA	NA	NA
WP_061999701.1\|2008264_2008714_+	hypothetical protein	H9C0W7	Aeromonas_phage	9.8e-14	41.1
WP_155524214.1\|2008883_2010746_+	hypothetical protein	Q4L1H3	Burkholderia_phage	2.7e-25	33.3
WP_155524215.1\|2010805_2011486_+	hypothetical protein	NA	NA	NA	NA
WP_061999705.1\|2011488_2011788_+	hypothetical protein	A0A077K9U4	Edwardsiella_phage	2.6e-18	45.5
WP_061999706.1\|2011784_2012648_+	hypothetical protein	A0A077KC17	Edwardsiella_phage	1.9e-18	25.1
WP_061999707.1\|2012637_2013402_+	hypothetical protein	A0A2R3UAK1	Myoviridae_environmental_samples	1.8e-39	49.7
WP_061999708.1\|2013412_2013766_+	hypothetical protein	H9C0X7	Aeromonas_phage	3.0e-18	46.4
WP_061999709.1\|2013777_2014992_+\|plate	baseplate J/gp47 family protein	A0A2R3UAL9	Myoviridae_environmental_samples	1.7e-81	41.3
WP_082778876.1\|2015396_2016425_+	DUF2612 domain-containing protein	A0A219YBB5	Aeromonas_phage	8.2e-40	47.8
WP_061999710.1\|2016414_2017449_+	hypothetical protein	A0A2R3UAP8	Myoviridae_environmental_samples	2.9e-16	50.0
WP_061999711.1\|2017449_2017881_+\|tail	tail fiber assembly protein	NA	NA	NA	NA
WP_061999712.1\|2017941_2019900_+	acyltransferase	W6MVL2	Pseudomonas_phage	3.3e-58	40.0

DBSCAN-SWA_5

2541064 : 2578521

Bacillus_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_132068076.1\|2541064_2541628_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_062000779.1\|2541612_2542074_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_062000101.1\|2542711_2543878_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_062000102.1\|2543918_2545124_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_086381897.1\|2545120_2546602_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_082778816.1\|2546652_2547855_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_082778885.1\|2547851_2548838_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_062000105.1\|2548865_2551088_-	polysaccharide biosynthesis tyrosine autokinase	NA	NA	NA	NA
WP_062000106.1\|2551123_2552299_-	polysaccharide biosynthesis/export family protein	NA	NA	NA	NA
WP_062000959.1\|2552292_2552748_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_062000107.1\|2552840_2554232_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	2.9e-80	38.8
WP_062000108.1\|2554283_2555654_-	undecaprenyl-phosphate glucose phosphotransferase	NA	NA	NA	NA
WP_062000109.1\|2556139_2557645_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	4.9e-49	28.4
WP_062000779.1\|2560237_2560699_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_132068076.1\|2560683_2561247_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_062000960.1\|2562307_2562688_+	hypothetical protein	NA	NA	NA	NA
WP_062000111.1\|2562684_2563584_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_082778817.1\|2564022_2564274_-	amino acid ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_086381893.1\|2564317_2564725_-	hypothetical protein	NA	NA	NA	NA
WP_172811947.1\|2564917_2565583_-	hypothetical protein	NA	NA	NA	NA
WP_155524233.1\|2566418_2567507_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_155524258.1\|2568167_2568506_+	hypothetical protein	NA	NA	NA	NA
WP_155524234.1\|2569230_2570607_-	GAF domain-containing protein	W8CYF6	Bacillus_phage	1.5e-20	27.7
WP_082778886.1\|2570935_2573038_+	hybrid sensor histidine kinase/response regulator	NA	NA	NA	NA
WP_062000118.1\|2573302_2574073_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	7.8e-19	26.5
WP_062000119.1\|2574069_2575698_-\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	2.2e-15	27.0
WP_144022248.1\|2576019_2576415_+\|transposase	transposase	NA	NA	NA	NA
WP_062000121.1\|2576411_2576759_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_062000961.1\|2577465_2578521_-\|transposase	IS110 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP014508

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5280 : 68966

Salmonella_phage(13.33%)

transposase,integrase

attL 9926:9942|attR 53267:53283

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_082779194.1\|5280_6600_-\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	4.9e-61	30.6
WP_062003777.1\|7414_8755_+	chloride channel protein	NA	NA	NA	NA
WP_062003778.1\|8824_10099_-	DUF2254 domain-containing protein	NA	NA	NA	NA
9926:9942	attL	NA	NA	NA	NA
WP_062003779.1\|10385_11507_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_082779159.1\|11744_13379_+	penicillin-binding protein 2	NA	NA	NA	NA
WP_062003780.1\|13550_14795_+	sodium:proton antiporter	A0A2H4J178	uncultured_Caudovirales_phage	5.1e-60	51.2
WP_155524377.1\|16559_16913_-	hypothetical protein	NA	NA	NA	NA
WP_062003784.1\|17774_18203_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_062003786.1\|19261_19984_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.7e-39	42.8
WP_062003787.1\|20322_21339_-	hypothetical protein	NA	NA	NA	NA
WP_062003788.1\|21359_24089_-	DEAD/DEAH box helicase	Q9YNZ9	Choristoneura_fumiferana_nuclear_polyhedrosis_virus	6.1e-34	28.3
WP_062004055.1\|24758_25148_+	hypothetical protein	NA	NA	NA	NA
WP_062003789.1\|25664_25970_+	hypothetical protein	NA	NA	NA	NA
WP_062003790.1\|26358_27825_+	ATP-binding domain-containing protein	A0A075DXT4	Acinetobacter_phage	4.1e-61	32.2
WP_062002954.1\|28401_29568_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	1.1e-67	40.3
WP_062003792.1\|29774_30191_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_062003793.1\|30190_30484_-	type II toxin-antitoxin system HigB family toxin	A0A0P0ZE17	Stx2-converting_phage	1.1e-08	35.1
WP_062003794.1\|30749_30929_+	hypothetical protein	NA	NA	NA	NA
WP_062004057.1\|33114_33654_-	nucleoside 2-deoxyribosyltransferase	NA	NA	NA	NA
WP_062000960.1\|33738_34119_+	hypothetical protein	NA	NA	NA	NA
WP_062000111.1\|34115_35015_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	1.1e-08	25.4
WP_082779160.1\|35064_35685_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_172812047.1\|35694_36831_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_062003798.1\|37075_37363_+	hypothetical protein	NA	NA	NA	NA
WP_082779161.1\|37362_38382_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_062003799.1\|38626_39049_-	hypothetical protein	NA	NA	NA	NA
WP_082779162.1\|39048_40152_-	NADP-dependent oxidoreductase	NA	NA	NA	NA
WP_062003800.1\|40351_41278_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_062003801.1\|41451_42378_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_062003802.1\|42450_43191_+	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	2.5e-22	32.7
WP_082779163.1\|45014_46601_+	aromatic amino acid lyase	A0A1V0S940	Catovirus	3.5e-58	31.3
WP_062004062.1\|46770_47118_+	PAS domain-containing protein	NA	NA	NA	NA
WP_062003805.1\|47117_48404_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.0e-18	35.5
WP_062003806.1\|48529_49324_+	EAL domain-containing protein	NA	NA	NA	NA
WP_062003807.1\|49482_50724_-	AMP-binding protein	NA	NA	NA	NA
WP_062003808.1\|50730_51117_-	photoactive yellow protein	NA	NA	NA	NA
WP_062003809.1\|51738_52047_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_062003810.1\|52058_53279_-	chromate efflux transporter	NA	NA	NA	NA
WP_062003811.1\|53510_54071_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	6.4e-47	83.6
53267:53283	attR	NA	NA	NA	NA
WP_062004063.1\|54074_57050_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	56.4
WP_082779195.1\|57096_57264_+	cyanate hydratase	NA	NA	NA	NA
WP_062003812.1\|57311_57791_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_062004064.1\|59130_59670_+	cytochrome P460 family protein	NA	NA	NA	NA
WP_062003814.1\|60656_61190_-	cytochrome b	NA	NA	NA	NA
WP_062003815.1\|61186_62248_-	catalase family peroxidase	NA	NA	NA	NA
WP_062004065.1\|64342_65116_-	glucose 1-dehydrogenase	A0A0M4JSW6	Mollivirus	3.2e-12	28.0
WP_155524378.1\|65528_65681_-	hypothetical protein	NA	NA	NA	NA
WP_062003817.1\|66549_66951_+	hypothetical protein	NA	NA	NA	NA
WP_062003818.1\|66926_67274_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_062003819.1\|67352_68966_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	7.5e-72	36.7

DBSCAN-SWA_2

91033 : 150014

Stx2-converting_phage(25.0%)

transposase,integrase

attL 79831:79847|attR 125376:125392

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
79831:79847	attL	NA	NA	NA	NA
WP_062003837.1\|91033_91576_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_062003838.1\|91572_92142_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_062003839.1\|92662_92908_-	hypothetical protein	NA	NA	NA	NA
WP_062004072.1\|93209_93815_-	hypothetical protein	NA	NA	NA	NA
WP_062003841.1\|94544_95204_+	carbonic anhydrase	NA	NA	NA	NA
WP_062003842.1\|95376_95646_-	hypothetical protein	NA	NA	NA	NA
WP_086383870.1\|98247_98880_-	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_062003844.1\|98888_99512_-	hypothetical protein	NA	NA	NA	NA
WP_082779170.1\|100134_101370_+	AAA family ATPase	A0A240F4U1	Ochrobactrum_phage	1.6e-29	28.4
WP_062003845.1\|101366_102374_+	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_082779171.1\|102644_103790_+	Replication protein O	NA	NA	NA	NA
WP_086383882.1\|104051_104303_+	transcriptional regulator	NA	NA	NA	NA
WP_062003848.1\|104299_104698_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_062003849.1\|105785_106037_-	hypothetical protein	NA	NA	NA	NA
WP_062003851.1\|106714_106918_+	hypothetical protein	NA	NA	NA	NA
WP_082779173.1\|106904_109106_+	recombinase family protein	I3VYZ3	Thermoanaerobacterium_phage	1.3e-10	24.2
WP_062003852.1\|109622_110543_+	H-NS histone family protein	NA	NA	NA	NA
WP_061999926.1\|111155_112322_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	8.9e-67	40.2
WP_062003854.1\|112517_113828_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	2.2e-13	29.9
WP_155524383.1\|114037_114661_+	hypothetical protein	NA	NA	NA	NA
WP_062003856.1\|115835_116966_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_062003857.1\|116931_117228_+	hypothetical protein	NA	NA	NA	NA
WP_062003858.1\|118339_119215_-\|integrase	site-specific integrase	S5W9T9	Leptospira_phage	5.5e-29	31.4
WP_062003859.1\|119606_119984_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_062004079.1\|120032_120848_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_062004081.1\|121388_122099_-	UPF0149 family protein	NA	NA	NA	NA
WP_082779175.1\|122225_123938_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_062003861.1\|124389_126174_+	SWIM zinc finger family protein	NA	NA	NA	NA
125376:125392	attR	NA	NA	NA	NA
WP_082779176.1\|126580_126775_+	DUF1289 domain-containing protein	NA	NA	NA	NA
WP_062003862.1\|126984_128217_-	beta-ketoacyl-[acyl-carrier-protein] synthase family protein	NA	NA	NA	NA
WP_082779177.1\|128213_128501_-	acyl carrier protein	NA	NA	NA	NA
WP_062003864.1\|128622_129879_-	FAD-dependent monooxygenase	NA	NA	NA	NA
WP_062003865.1\|129885_130614_-	hypothetical protein	NA	NA	NA	NA
WP_062003866.1\|130647_131739_-	stilbene synthase	NA	NA	NA	NA
WP_155524384.1\|134167_134512_+	hypothetical protein	NA	NA	NA	NA
WP_082779179.1\|134926_135781_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_062003869.1\|135989_136412_+	hypothetical protein	NA	NA	NA	NA
WP_154563997.1\|136405_136753_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.5e-09	38.8
WP_062003870.1\|136812_138327_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.1e-77	35.8
WP_062003871.1\|138342_138834_+	hypothetical protein	NA	NA	NA	NA
WP_062003872.1\|139036_139771_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_062004086.1\|140064_141273_+	oxidoreductase	NA	NA	NA	NA
WP_062003873.1\|141300_141813_+	flavin reductase family protein	NA	NA	NA	NA
WP_082779197.1\|141994_143074_+	amidohydrolase	NA	NA	NA	NA
WP_155524385.1\|143123_144203_+	amidohydrolase family protein	NA	NA	NA	NA
WP_062003875.1\|144249_145086_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_062003876.1\|145151_146093_+	VOC family protein	NA	NA	NA	NA
WP_062003877.1\|146382_147039_+	amidohydrolase family protein	NA	NA	NA	NA
WP_082779181.1\|147091_148279_+	porin	NA	NA	NA	NA
WP_155524399.1\|149292_150014_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	3.1e-41	45.7

DBSCAN-SWA_3

169455 : 231591

Stx2-converting_phage(37.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_082779198.1\|169455_170775_+\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	4.9e-61	30.3
WP_062003891.1\|170774_171164_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_062003893.1\|173413_173854_+	IS66 family insertion sequence hypothetical protein	B6DZU5	Stx2-converting_phage	3.5e-16	39.7
WP_062003894.1\|173850_174195_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	3.9e-39	64.3
WP_062003895.1\|174225_175800_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.7e-140	51.5
WP_062003896.1\|176766_177483_-	UTRA domain-containing protein	NA	NA	NA	NA
WP_155524388.1\|177481_177685_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_155524389.1\|178016_178160_+	hypothetical protein	NA	NA	NA	NA
WP_062003897.1\|178153_178384_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_062003898.1\|178539_178995_-	DUF302 domain-containing protein	NA	NA	NA	NA
WP_062003899.1\|179074_179884_-	PhnD/SsuA/transferrin family substrate-binding protein	NA	NA	NA	NA
WP_062003900.1\|180053_181241_-	porin	NA	NA	NA	NA
WP_062003902.1\|181444_183088_-	aromatic amino acid lyase	NA	NA	NA	NA
WP_062003904.1\|183377_184382_-	ornithine cyclodeaminase family protein	A0A1V0SL93	Klosneuvirus	9.5e-09	23.8
WP_082779199.1\|184407_185712_-	MFS transporter	NA	NA	NA	NA
WP_155524390.1\|187052_188321_+	porin	NA	NA	NA	NA
WP_062003908.1\|189296_190214_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_082779184.1\|190316_192014_+	FAD-dependent monooxygenase	NA	NA	NA	NA
WP_062003912.1\|192136_193468_+	MFS transporter	NA	NA	NA	NA
WP_062003913.1\|193508_194354_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_155524400.1\|194334_195306_+	VOC family protein	NA	NA	NA	NA
WP_062003918.1\|195366_196503_+	porin	NA	NA	NA	NA
WP_062003920.1\|196823_198296_+	carboxylesterase family protein	A0A0B5J865	Pandoravirus	4.0e-32	31.1
WP_082779185.1\|198696_199008_+	hypothetical protein	NA	NA	NA	NA
WP_062003925.1\|199395_200124_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_062003927.1\|200291_201140_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_062004095.1\|201216_202188_+	VOC family protein	NA	NA	NA	NA
WP_062003929.1\|202274_203912_+	bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase	NA	NA	NA	NA
WP_062004096.1\|204580_205483_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_062003930.1\|205804_207157_+	MFS transporter	NA	NA	NA	NA
WP_172812048.1\|207492_208191_+	Asp/Glu racemase	NA	NA	NA	NA
WP_062003936.1\|209578_210280_+	DUF1223 domain-containing protein	NA	NA	NA	NA
WP_062003938.1\|210342_212451_+	thioredoxin family protein	NA	NA	NA	NA
WP_155524391.1\|212742_212976_-	DUF1109 family protein	NA	NA	NA	NA
WP_172812049.1\|213038_213491_-	DUF1109 family protein	NA	NA	NA	NA
WP_082771716.1\|213583_213973_+	thioredoxin family protein	NA	NA	NA	NA
WP_062003942.1\|213972_214701_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_082779200.1\|214861_216853_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_155524392.1\|217231_217759_-\|transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	1.8e-14	48.6
WP_062003947.1\|218352_219138_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_062004111.1\|219159_219774_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA
WP_062003949.1\|220478_220727_-	pentapeptide MXKDX repeat protein	NA	NA	NA	NA
WP_062003951.1\|221251_222025_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_062003953.1\|222124_222421_-	hypothetical protein	NA	NA	NA	NA
WP_062003955.1\|222386_223517_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_155524401.1\|223813_224971_+	beta-propeller fold lactonase family protein	NA	NA	NA	NA
WP_082779187.1\|225372_225945_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_062003958.1\|225941_226583_+	DUF1109 domain-containing protein	NA	NA	NA	NA
WP_062003960.1\|226719_227361_+	DUF1109 domain-containing protein	NA	NA	NA	NA
WP_155524393.1\|227646_227817_-	hypothetical protein	NA	NA	NA	NA
WP_062003962.1\|228247_228427_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_062003966.1\|230424_231591_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	8.9e-67	40.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP014506

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

390396 : 412167

Cronobacter_phage(100.0%)

plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062001332.1\|390396_390819_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_062001333.1\|390815_393488_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	3.7e-92	31.8
WP_062001334.1\|393602_394088_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_155524270.1\|394103_395840_-	OmpA family protein	NA	NA	NA	NA
WP_062001335.1\|395850_396498_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_082778907.1\|396494_397841_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_062001336.1\|397931_399500_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_082779010.1\|399635_400403_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_082779009.1\|400392_401076_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_062001337.1\|401132_401462_-	pyrimidine/purine nucleoside phosphorylase	NA	NA	NA	NA
WP_062001338.1\|401528_402050_-	Lrp/AsnC ligand binding domain-containing protein	NA	NA	NA	NA
WP_062001339.1\|402209_403226_+	1-aminocyclopropane-1-carboxylate deaminase	NA	NA	NA	NA
WP_062001340.1\|403530_404037_+	DUF3455 domain-containing protein	NA	NA	NA	NA
WP_086381639.1\|404056_404707_+	YceI family protein	NA	NA	NA	NA
WP_062001341.1\|405015_406077_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_062001342.1\|406109_406610_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_155524271.1\|406658_408176_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_062001343.1\|408245_408737_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_062002293.1\|408757_409264_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_062001344.1\|409288_411145_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_062001345.1\|411129_412167_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP014507

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

211091 : 230968

Escherichia_phage(12.5%)

protease,integrase,head,transposase

attL 203996:204010|attR 228550:228564

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
203996:204010	attL	NA	NA	NA	NA
WP_172812018.1\|211091_212069_+\|integrase	phage integrase SAM-like domain-containing protein	NA	NA	NA	NA
WP_062000707.1\|212161_213682_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.7e-12	28.0
WP_061998597.1\|213674_214469_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	5.4e-31	33.3
WP_062000780.1\|215029_216379_+\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	5.7e-57	31.0
WP_062002591.1\|216397_216628_+	hypothetical protein	NA	NA	NA	NA
WP_082779055.1\|216947_217208_-	Rha family transcriptional regulator	B5AX29	Iodobacteriophage	6.5e-18	53.9
WP_062002592.1\|218124_218610_+	hypothetical protein	NA	NA	NA	NA
WP_062002593.1\|218620_218836_+	hypothetical protein	NA	NA	NA	NA
WP_062002594.1\|218832_219366_+\|head,protease	HK97 family phage prohead protease	A0A2H4J367	uncultured_Caudovirales_phage	4.3e-08	32.5
WP_062002595.1\|219425_219761_+	hypothetical protein	NA	NA	NA	NA
WP_155524326.1\|219844_220213_+	hypothetical protein	NA	NA	NA	NA
WP_062002596.1\|220212_220716_+	hypothetical protein	NA	NA	NA	NA
WP_062002597.1\|220766_222257_+	hypothetical protein	F1C585	Cronobacter_phage	2.4e-80	38.4
WP_062002598.1\|223893_224724_+	hypothetical protein	NA	NA	NA	NA
WP_082779056.1\|225486_226104_+	HNH endonuclease	A0A0H5ARI7	Pseudomonas_phage	3.4e-25	42.9
WP_155524328.1\|226640_227024_+	hypothetical protein	NA	NA	NA	NA
WP_062002603.1\|227663_227957_+	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_062003627.1\|228197_229364_+	metallophosphoesterase	NA	NA	NA	NA
228550:228564	attR	NA	NA	NA	NA
WP_061998991.1\|229682_230582_-\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	4.0e-06	27.2
WP_061998992.1\|230578_230968_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

531695 : 546105

Burkholderia_phage(42.86%)

integrase,tail

attL 529492:529509|attR 540025:540042

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
529492:529509	attL	NA	NA	NA	NA
WP_082779075.1\|531695_532778_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	A0A2H4IYC8	uncultured_Caudovirales_phage	6.6e-40	33.1
WP_082779076.1\|532755_532974_-	excisionase	NA	NA	NA	NA
WP_062002841.1\|533315_533744_+	DUF3277 family protein	A0A0P0IKY2	Acinetobacter_phage	3.9e-36	56.4
WP_062002842.1\|533740_534175_+	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	1.0e-23	44.0
WP_155524340.1\|534186_534354_+	hypothetical protein	NA	NA	NA	NA
WP_062002843.1\|534357_536223_+	hypothetical protein	A0A2H4J9N7	uncultured_Caudovirales_phage	6.8e-77	33.6
WP_062002845.1\|536809_537121_+	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	3.1e-19	48.5
WP_062002846.1\|537110_537797_-	DUF4431 domain-containing protein	NA	NA	NA	NA
WP_062002847.1\|537812_538796_+	hypothetical protein	A9YX04	Burkholderia_phage	3.9e-55	43.4
WP_082779077.1\|538770_539514_+	hypothetical protein	A9YX06	Burkholderia_phage	6.5e-71	56.0
WP_062002849.1\|539522_539876_+	hypothetical protein	A9YX11	Burkholderia_phage	1.3e-29	56.4
WP_062002850.1\|539872_541054_+	hypothetical protein	A9YX12	Burkholderia_phage	8.0e-132	65.4
540025:540042	attR	NA	NA	NA	NA
WP_082779078.1\|541055_542498_+	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	3.6e-17	51.8
WP_062002851.1\|542513_543443_+	hypothetical protein	A9YX14	Burkholderia_phage	1.2e-18	64.8
WP_062002852.1\|543436_543856_+\|tail	tail fiber assembly protein	A0A2P1JUG3	Erwinia_phage	1.5e-11	53.8
WP_062002853.1\|543929_544349_+	hypothetical protein	NA	NA	NA	NA
WP_155524341.1\|544290_544881_+	hypothetical protein	NA	NA	NA	NA
WP_062002855.1\|544880_545411_+	glycoside hydrolase family 19 protein	A0A059VA40	Pseudomonas_phage	2.3e-46	61.2
WP_062002856.1\|545571_546105_+	hypothetical protein	A0A2H4P7A0	Pseudomonas_phage	1.5e-05	32.9

DBSCAN-SWA_3

1424154 : 1476894

Tupanvirus(50.0%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062003541.1\|1424154_1425057_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_062003763.1\|1425103_1426117_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_062003543.1\|1426192_1427146_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_062003545.1\|1427171_1428278_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_062003764.1\|1428868_1429153_-	hypothetical protein	NA	NA	NA	NA
WP_062003548.1\|1429463_1430858_+	L-serine ammonia-lyase	NA	NA	NA	NA
WP_062003550.1\|1430911_1432156_+	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA
WP_062003552.1\|1432176_1432488_+	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_062003554.1\|1432484_1435487_+	sarcosine oxidase subunit alpha family protein	NA	NA	NA	NA
WP_062003556.1\|1435476_1436127_+	sarcosine oxidase subunit gamma	NA	NA	NA	NA
WP_062003558.1\|1436123_1436591_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_062003559.1\|1436571_1436835_+	hypothetical protein	NA	NA	NA	NA
WP_062003560.1\|1436836_1438066_-	hypothetical protein	NA	NA	NA	NA
WP_062003561.1\|1438052_1439204_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_062003562.1\|1439193_1440285_-	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA
WP_062003563.1\|1440271_1441327_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_155524359.1\|1441323_1442775_-	hypothetical protein	NA	NA	NA	NA
WP_062003565.1\|1442771_1445009_-	polysaccharide biosynthesis tyrosine autokinase	NA	NA	NA	NA
WP_062003566.1\|1445014_1445464_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_082779128.1\|1445468_1446647_-	polysaccharide biosynthesis/export family protein	NA	NA	NA	NA
WP_062003567.1\|1446704_1448093_-	undecaprenyl-phosphate glucose phosphotransferase	NA	NA	NA	NA
WP_062003568.1\|1448639_1450328_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	2.9e-50	29.2
WP_062003569.1\|1450338_1451808_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_062003570.1\|1451819_1452419_-	transcriptional regulator BetI	NA	NA	NA	NA
WP_062003571.1\|1452635_1453835_+	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	6.5e-12	27.7
WP_062003572.1\|1453878_1454889_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_062003766.1\|1455306_1456596_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	8.3e-106	54.2
WP_062003573.1\|1456623_1457595_+	membrane dipeptidase	NA	NA	NA	NA
WP_062003574.1\|1457622_1458159_+	4-vinyl reductase	NA	NA	NA	NA
WP_062003575.1\|1458207_1460271_+	NADH:flavin oxidoreductase	NA	NA	NA	NA
WP_062003576.1\|1460273_1462193_+	(Fe-S)-binding protein	NA	NA	NA	NA
WP_062003577.1\|1462196_1463384_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_062003578.1\|1463380_1464178_+	drug:proton antiporter	NA	NA	NA	NA
WP_062003579.1\|1464241_1465543_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_062003580.1\|1465580_1466798_+	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_062003767.1\|1466940_1467801_+	glycine betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_062003768.1\|1467872_1468745_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_062003581.1\|1468874_1469807_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_062003582.1\|1469929_1471468_+\|holin	choline-sulfatase	A0A2K9L727	Tupanvirus	2.3e-22	27.0
WP_062003583.1\|1471507_1472458_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_062003584.1\|1472733_1473882_+	porin	NA	NA	NA	NA
WP_062003585.1\|1473887_1474871_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_062003586.1\|1475937_1476894_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_CP014509

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

17167 : 23616

Escherichia_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062004156.1\|17167_17851_-	ParA family protein	A0A0A8IL09	Aurantimonas_phage	2.7e-39	42.0
WP_062004159.1\|18167_18458_+	type II toxin-antitoxin system HigB family toxin	F5A3A2	Riemerella_phage	3.0e-08	29.5
WP_082779207.1\|18457_18883_+	transcriptional regulator	A0A222YXG1	Escherichia_phage	5.6e-11	35.5
WP_062004162.1\|19968_20274_+	type II toxin-antitoxin system HigB family toxin	A0A0P0ZE17	Stx2-converting_phage	1.3e-17	45.6
WP_062004164.1\|20276_20639_+	hypothetical protein	A0A222YXG1	Escherichia_phage	2.3e-29	52.1
WP_062004220.1\|20777_20981_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	7.0e-20	73.5
WP_062004222.1\|23340_23616_+	HU family DNA-binding protein	B5TA87	Burkholderia_phage	4.0e-18	55.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP014505

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP014508

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP014506

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP014507

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

5. NZ_CP014509

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection