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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP010888 Clostridioides difficile strain 08ACD0030 chromosome, complete genome 19 crisprs cas14k,csa3,WYL,cas3,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2 3 52 9 0

Results visualization

1. NZ_CP010888
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010888_1 632887-632976 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010888_2 648352-648430 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010888_3 650364-650453 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010888_4 1661474-1661831 Orphan NA:I-A
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010888_5 1663450-1663739 Orphan I-A
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010888_6 1665537-1666097 Orphan III-B
8 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010888_7 1823853-1824606 Orphan I-A
11 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010888_8 2036281-2036905 Orphan I-A
9 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010888_9 2176153-2176976 TypeV I-A
12 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010888_10 2353654-2354737 TypeV I-A
16 spacers
cas14j

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010888_11 2692821-2692988 Orphan I-A
2 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010888_12 3074062-3074743 Orphan NA
10 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010888_13 3237711-3237868 Unclear NA
2 spacers
cas3,cas5,cas7,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010888_14 3319613-3319970 Orphan I-A
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010888_15 3554826-3555151 Orphan NA
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010888_18 3610514-3610604 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010888_17 3610022-3610311 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010888_16 3609608-3609915 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010888_19 3822106-3823834 Unclear I-A
26 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP010888_1 1.1|632915|34|NZ_CP010888|CRISPRCasFinder 632915-632948 34 NZ_CP010888.1 519514-519547 0 1.0
NZ_CP010888_1 1.1|632915|34|NZ_CP010888|CRISPRCasFinder 632915-632948 34 NZ_CP010888.1 533806-533839 0 1.0
NZ_CP010888_1 1.1|632915|34|NZ_CP010888|CRISPRCasFinder 632915-632948 34 NZ_CP010888.1 639843-639876 0 1.0
NZ_CP010888_1 1.1|632915|34|NZ_CP010888|CRISPRCasFinder 632915-632948 34 NZ_CP010888.1 655844-655877 0 1.0
NZ_CP010888_1 1.1|632915|34|NZ_CP010888|CRISPRCasFinder 632915-632948 34 NZ_CP010888.1 3567801-3567834 0 1.0
NZ_CP010888_3 3.1|650392|34|NZ_CP010888|CRISPRCasFinder 650392-650425 34 NZ_CP010888.1 519514-519547 0 1.0
NZ_CP010888_3 3.1|650392|34|NZ_CP010888|CRISPRCasFinder 650392-650425 34 NZ_CP010888.1 533806-533839 0 1.0
NZ_CP010888_3 3.1|650392|34|NZ_CP010888|CRISPRCasFinder 650392-650425 34 NZ_CP010888.1 639843-639876 0 1.0
NZ_CP010888_3 3.1|650392|34|NZ_CP010888|CRISPRCasFinder 650392-650425 34 NZ_CP010888.1 655844-655877 0 1.0
NZ_CP010888_3 3.1|650392|34|NZ_CP010888|CRISPRCasFinder 650392-650425 34 NZ_CP010888.1 3567801-3567834 0 1.0
NZ_CP010888_9 9.9|2176711|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2176711-2176747 37 NZ_CP010888.1 2429806-2429842 0 1.0

1. spacer 1.1|632915|34|NZ_CP010888|CRISPRCasFinder matches to position: 519514-519547, mismatch: 0, identity: 1.0

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

2. spacer 1.1|632915|34|NZ_CP010888|CRISPRCasFinder matches to position: 533806-533839, mismatch: 0, identity: 1.0

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

3. spacer 1.1|632915|34|NZ_CP010888|CRISPRCasFinder matches to position: 639843-639876, mismatch: 0, identity: 1.0

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

4. spacer 1.1|632915|34|NZ_CP010888|CRISPRCasFinder matches to position: 655844-655877, mismatch: 0, identity: 1.0

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

5. spacer 1.1|632915|34|NZ_CP010888|CRISPRCasFinder matches to position: 3567801-3567834, mismatch: 0, identity: 1.0

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

6. spacer 3.1|650392|34|NZ_CP010888|CRISPRCasFinder matches to position: 519514-519547, mismatch: 0, identity: 1.0

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

7. spacer 3.1|650392|34|NZ_CP010888|CRISPRCasFinder matches to position: 533806-533839, mismatch: 0, identity: 1.0

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

8. spacer 3.1|650392|34|NZ_CP010888|CRISPRCasFinder matches to position: 639843-639876, mismatch: 0, identity: 1.0

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

9. spacer 3.1|650392|34|NZ_CP010888|CRISPRCasFinder matches to position: 655844-655877, mismatch: 0, identity: 1.0

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

10. spacer 3.1|650392|34|NZ_CP010888|CRISPRCasFinder matches to position: 3567801-3567834, mismatch: 0, identity: 1.0

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

11. spacer 9.9|2176711|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to position: 2429806-2429842, mismatch: 0, identity: 1.0

atgtaatagaatgcaaaatgacacagccatataatgc	CRISPR spacer
atgtaatagaatgcaaaatgacacagccatataatgc	Protospacer
*************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP010888_2 2.1|648377|29|NZ_CP010888|CRISPRCasFinder 648377-648405 29 NZ_CP033215 Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence 5105-5133 0 1.0
NZ_CP010888_4 4.3|1661635|36|NZ_CP010888|PILER-CR,CRISPRCasFinder 1661635-1661670 36 JX145342 Clostridium phage phiMMP04, complete genome 11947-11982 0 1.0
NZ_CP010888_4 4.8|1661634|37|NZ_CP010888|CRT 1661634-1661670 37 JX145342 Clostridium phage phiMMP04, complete genome 11947-11983 0 1.0
NZ_CP010888_6 6.2|1665633|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1665633-1665668 36 MK473382 Clostridium phage JD032, complete genome 13519-13554 0 1.0
NZ_CP010888_6 6.2|1665633|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1665633-1665668 36 NC_048665 Clostridium phage phiCDHM14, complete genome 20865-20900 0 1.0
NZ_CP010888_6 6.2|1665633|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1665633-1665668 36 NC_028838 Clostridium phage phiCD506, complete genome 20892-20927 0 1.0
NZ_CP010888_6 6.2|1665633|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1665633-1665668 36 HG796225 Clostridium phage phiCDHM13 complete genome 20365-20400 0 1.0
NZ_CP010888_6 6.2|1665633|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1665633-1665668 36 HG798901 Clostridium phage phiCDHM11 complete genome 20364-20399 0 1.0
NZ_CP010888_6 6.8|1666032|36|NZ_CP010888|CRISPRCasFinder,CRT 1666032-1666067 36 HG531805 Clostridium phage CDMH1 complete genome 12646-12681 0 1.0
NZ_CP010888_7 7.1|1823882|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1823882-1823918 37 FN668942 Clostridium difficile BI1 plasmid pCDBI1, complete sequence 4585-4621 0 1.0
NZ_CP010888_7 7.5|1824148|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1824148-1824184 37 HM568888 Clostridium phage phiCD38-2, complete genome 3762-3798 0 1.0
NZ_CP010888_7 7.6|1824214|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1824214-1824249 36 HM568888 Clostridium phage phiCD38-2, complete genome 4433-4468 0 1.0
NZ_CP010888_9 9.6|2176514|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2176514-2176550 37 JX145342 Clostridium phage phiMMP04, complete genome 21918-21954 0 1.0
NZ_CP010888_9 9.8|2176645|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2176645-2176681 37 NC_011398 Clostridium phage phiCD27, complete genome 21852-21888 0 1.0
NZ_CP010888_10 10.2|2353749|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2353749-2353785 37 HG796225 Clostridium phage phiCDHM13 complete genome 33300-33336 0 1.0
NZ_CP010888_10 10.16|2354672|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2354672-2354708 37 NZ_MF547664 Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence 33648-33684 0 1.0
NZ_CP010888_12 12.4|3074287|36|NZ_CP010888|CRISPRCasFinder 3074287-3074322 36 NZ_MF547664 Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence 25530-25565 0 1.0
NZ_CP010888_12 12.14|3074287|37|NZ_CP010888|CRT,PILER-CR 3074287-3074323 37 NZ_MF547664 Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence 25530-25566 0 1.0
NZ_CP010888_19 19.7|3822526|36|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR 3822526-3822561 36 GU949551 Clostridium phage phiCD6356, complete genome 13611-13646 0 1.0
NZ_CP010888_19 19.8|3822591|37|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR 3822591-3822627 37 KU057941 Clostridium phage CDSH1, complete genome 39445-39481 0 1.0
NZ_CP010888_19 19.8|3822591|37|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR 3822591-3822627 37 NC_028905 Clostridium phage phiCD111, complete genome 39413-39449 0 1.0
NZ_CP010888_19 19.8|3822591|37|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR 3822591-3822627 37 HM568888 Clostridium phage phiCD38-2, complete genome 38943-38979 0 1.0
NZ_CP010888_19 19.8|3822591|37|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR 3822591-3822627 37 LN881738 Escherichia phage slur17, complete genome 22575-22611 0 1.0
NZ_CP010888_19 19.10|3822722|37|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR 3822722-3822758 37 NC_028905 Clostridium phage phiCD111, complete genome 1184-1220 0 1.0
NZ_CP010888_19 19.10|3822722|37|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR 3822722-3822758 37 NC_028958 Clostridium phage phiCD146, complete genome 1189-1225 0 1.0
NZ_CP010888_19 19.20|3823376|36|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR 3823376-3823411 36 LN881738 Escherichia phage slur17, complete genome 35408-35443 0 1.0
NZ_CP010888_19 19.20|3823376|36|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR 3823376-3823411 36 KU057941 Clostridium phage CDSH1, complete genome 26613-26648 0 1.0
NZ_CP010888_19 19.20|3823376|36|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR 3823376-3823411 36 NC_028905 Clostridium phage phiCD111, complete genome 26387-26422 0 1.0
NZ_CP010888_19 19.20|3823376|36|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR 3823376-3823411 36 HM568888 Clostridium phage phiCD38-2, complete genome 26109-26144 0 1.0
NZ_CP010888_19 19.20|3823376|36|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR 3823376-3823411 36 NC_028958 Clostridium phage phiCD146, complete genome 25671-25706 0 1.0
NZ_CP010888_1 1.1|632915|34|NZ_CP010888|CRISPRCasFinder 632915-632948 34 NZ_CP033215 Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence 3086-3119 1 0.971
NZ_CP010888_3 3.1|650392|34|NZ_CP010888|CRISPRCasFinder 650392-650425 34 NZ_CP033215 Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence 3086-3119 1 0.971
NZ_CP010888_4 4.1|1661504|35|NZ_CP010888|PILER-CR,CRISPRCasFinder 1661504-1661538 35 KX905163 Clostridioides phage phiSemix9P1, complete genome 6295-6329 1 0.971
NZ_CP010888_4 4.6|1661503|36|NZ_CP010888|CRT 1661503-1661538 36 KX905163 Clostridioides phage phiSemix9P1, complete genome 6295-6330 1 0.972
NZ_CP010888_6 6.2|1665633|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1665633-1665668 36 LN881738 Escherichia phage slur17, complete genome 34681-34716 1 0.972
NZ_CP010888_6 6.2|1665633|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1665633-1665668 36 KU057941 Clostridium phage CDSH1, complete genome 27340-27375 1 0.972
NZ_CP010888_6 6.2|1665633|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1665633-1665668 36 NC_028905 Clostridium phage phiCD111, complete genome 27114-27149 1 0.972
NZ_CP010888_6 6.2|1665633|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1665633-1665668 36 HM568888 Clostridium phage phiCD38-2, complete genome 26836-26871 1 0.972
NZ_CP010888_6 6.2|1665633|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1665633-1665668 36 NC_028958 Clostridium phage phiCD146, complete genome 26398-26433 1 0.972
NZ_CP010888_6 6.2|1665633|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1665633-1665668 36 LN681538 Clostridium phage phiCD481-1, complete genome 20311-20346 1 0.972
NZ_CP010888_6 6.8|1666032|36|NZ_CP010888|CRISPRCasFinder,CRT 1666032-1666067 36 KX228400 Clostridium phage CDKM15, complete genome 18966-19001 1 0.972
NZ_CP010888_7 7.1|1823882|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1823882-1823918 37 NZ_CP020425 Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence 5937-5973 1 0.973
NZ_CP010888_7 7.1|1823882|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1823882-1823918 37 NZ_CP011969 Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence 1259-1295 1 0.973
NZ_CP010888_7 7.1|1823882|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1823882-1823918 37 NZ_CP029156 Clostridioides difficile strain CD161 plasmid unnamed2, complete sequence 41686-41722 1 0.973
NZ_CP010888_7 7.1|1823882|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1823882-1823918 37 NZ_CP029153 Clostridioides difficile strain CDT4 plasmid unnamed1, complete sequence 35730-35766 1 0.973
NZ_CP010888_7 7.7|1824279|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1824279-1824314 36 KU057941 Clostridium phage CDSH1, complete genome 15672-15707 1 0.972
NZ_CP010888_7 7.7|1824279|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1824279-1824314 36 LN881738 Escherichia phage slur17, complete genome 4730-4765 1 0.972
NZ_CP010888_7 7.7|1824279|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1824279-1824314 36 HM568888 Clostridium phage phiCD38-2, complete genome 15168-15203 1 0.972
NZ_CP010888_9 9.10|2176777|38|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2176777-2176814 38 AY855346 Clostridium difficile bacteriophage phi CD119, complete genome 30372-30409 1 0.974
NZ_CP010888_9 9.10|2176777|38|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2176777-2176814 38 NC_007917 Clostridium phage phi CD119, complete genome 30372-30409 1 0.974
NZ_CP010888_9 9.10|2176777|38|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2176777-2176814 38 NC_028996 Clostridium phage phiCDHM19, complete genome 34048-34085 1 0.974
NZ_CP010888_10 10.2|2353749|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2353749-2353785 37 NC_028838 Clostridium phage phiCD506, complete genome 163-199 1 0.973
NZ_CP010888_10 10.2|2353749|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2353749-2353785 37 LN681538 Clostridium phage phiCD481-1, complete genome 186-222 1 0.973
NZ_CP010888_10 10.2|2353749|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2353749-2353785 37 NC_048665 Clostridium phage phiCDHM14, complete genome 32353-32389 1 0.973
NZ_CP010888_10 10.2|2353749|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2353749-2353785 37 HG798901 Clostridium phage phiCDHM11 complete genome 31704-31740 1 0.973
NZ_CP010888_12 12.3|3074221|37|NZ_CP010888|CRISPRCasFinder 3074221-3074257 37 JX145342 Clostridium phage phiMMP04, complete genome 12593-12629 1 0.973
NZ_CP010888_12 12.5|3074352|38|NZ_CP010888|CRISPRCasFinder 3074352-3074389 38 NZ_MF547664 Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence 15483-15520 1 0.974
NZ_CP010888_19 19.10|3822722|37|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR 3822722-3822758 37 LN881738 Escherichia phage slur17, complete genome 19245-19281 1 0.973
NZ_CP010888_19 19.10|3822722|37|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR 3822722-3822758 37 KU057941 Clostridium phage CDSH1, complete genome 1156-1192 1 0.973
NZ_CP010888_19 19.10|3822722|37|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR 3822722-3822758 37 HM568888 Clostridium phage phiCD38-2, complete genome 1184-1220 1 0.973
NZ_CP010888_19 19.26|3823769|37|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR 3823769-3823805 37 GU949551 Clostridium phage phiCD6356, complete genome 24601-24637 1 0.973
NZ_CP010888_19 19.26|3823769|37|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR 3823769-3823805 37 JX145342 Clostridium phage phiMMP04, complete genome 20513-20549 1 0.973
NZ_CP010888_4 4.1|1661504|35|NZ_CP010888|PILER-CR,CRISPRCasFinder 1661504-1661538 35 FN668942 Clostridium difficile BI1 plasmid pCDBI1, complete sequence 3198-3232 2 0.943
NZ_CP010888_4 4.5|1661767|35|NZ_CP010888|CRISPRCasFinder 1661767-1661801 35 NZ_MG973074 Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence 22132-22166 2 0.943
NZ_CP010888_4 4.6|1661503|36|NZ_CP010888|CRT 1661503-1661538 36 FN668942 Clostridium difficile BI1 plasmid pCDBI1, complete sequence 3198-3233 2 0.944
NZ_CP010888_4 4.10|1661766|36|NZ_CP010888|CRT 1661766-1661801 36 NZ_MG973074 Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence 22132-22167 2 0.944
NZ_CP010888_7 7.5|1824148|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1824148-1824184 37 KU057941 Clostridium phage CDSH1, complete genome 3734-3770 2 0.946
NZ_CP010888_7 7.5|1824148|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1824148-1824184 37 NC_028905 Clostridium phage phiCD111, complete genome 3762-3798 2 0.946
NZ_CP010888_7 7.5|1824148|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1824148-1824184 37 NC_028958 Clostridium phage phiCD146, complete genome 3767-3803 2 0.946
NZ_CP010888_7 7.5|1824148|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1824148-1824184 37 LN680008 Clostridium phage phiCDHS1 gp04 gene for putative capsid protein 304-340 2 0.946
NZ_CP010888_7 7.5|1824148|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1824148-1824184 37 LN881738 Escherichia phage slur17, complete genome 16667-16703 2 0.946
NZ_CP010888_7 7.10|1824476|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1824476-1824512 37 KU057941 Clostridium phage CDSH1, complete genome 12598-12634 2 0.946
NZ_CP010888_7 7.10|1824476|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1824476-1824512 37 NC_028905 Clostridium phage phiCD111, complete genome 12625-12661 2 0.946
NZ_CP010888_7 7.10|1824476|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1824476-1824512 37 LN881738 Escherichia phage slur17, complete genome 7803-7839 2 0.946
NZ_CP010888_7 7.11|1824542|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1824542-1824577 36 NC_028996 Clostridium phage phiCDHM19, complete genome 34840-34875 2 0.944
NZ_CP010888_9 9.11|2176844|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2176844-2176880 37 NZ_MG973074 Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence 102058-102094 2 0.946
NZ_CP010888_9 9.12|2176910|38|NZ_CP010888|CRISPRCasFinder,CRT 2176910-2176947 38 NZ_MG973074 Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence 94861-94898 2 0.947
NZ_CP010888_10 10.2|2353749|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2353749-2353785 37 MK473382 Clostridium phage JD032, complete genome 34940-34976 2 0.946
NZ_CP010888_10 10.12|2354410|35|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2354410-2354444 35 LN881738 Escherichia phage slur17, complete genome 23273-23307 2 0.943
NZ_CP010888_10 10.12|2354410|35|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2354410-2354444 35 KU057941 Clostridium phage CDSH1, complete genome 38749-38783 2 0.943
NZ_CP010888_10 10.12|2354410|35|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2354410-2354444 35 HM568888 Clostridium phage phiCD38-2, complete genome 38247-38281 2 0.943
NZ_CP010888_10 10.12|2354410|35|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2354410-2354444 35 NC_028958 Clostridium phage phiCD146, complete genome 38400-38434 2 0.943
NZ_CP010888_11 11.1|2692857|36|NZ_CP010888|PILER-CR 2692857-2692892 36 KU057941 Clostridium phage CDSH1, complete genome 4452-4487 2 0.944
NZ_CP010888_11 11.1|2692857|36|NZ_CP010888|PILER-CR 2692857-2692892 36 NC_028958 Clostridium phage phiCD146, complete genome 4485-4520 2 0.944
NZ_CP010888_11 11.1|2692857|36|NZ_CP010888|PILER-CR 2692857-2692892 36 LN680008 Clostridium phage phiCDHS1 gp04 gene for putative capsid protein 1022-1057 2 0.944
NZ_CP010888_11 11.1|2692857|36|NZ_CP010888|PILER-CR 2692857-2692892 36 LN881738 Escherichia phage slur17, complete genome 15950-15985 2 0.944
NZ_CP010888_12 12.1|3074091|36|NZ_CP010888|CRISPRCasFinder 3074091-3074126 36 NZ_MG973074 Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence 22132-22167 2 0.944
NZ_CP010888_12 12.11|3074091|37|NZ_CP010888|CRT 3074091-3074127 37 NZ_MG973074 Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence 22132-22168 2 0.946
NZ_CP010888_12 12.13|3074221|38|NZ_CP010888|CRT,PILER-CR 3074221-3074258 38 JX145342 Clostridium phage phiMMP04, complete genome 12593-12630 2 0.947
NZ_CP010888_12 12.15|3074352|39|NZ_CP010888|CRT,PILER-CR 3074352-3074390 39 NZ_MF547664 Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence 15483-15521 2 0.949
NZ_CP010888_19 19.17|3823181|34|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR 3823181-3823214 34 MF547663 Clostridioides phage LIBA2945, complete genome 114913-114946 2 0.941
NZ_CP010888_19 19.17|3823181|34|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR 3823181-3823214 34 CP011970 Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence 113719-113752 2 0.941
NZ_CP010888_19 19.17|3823181|34|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR 3823181-3823214 34 LN681537 Clostridium phage phiCD211, complete genome 122581-122614 2 0.941
NZ_CP010888_19 19.17|3823181|34|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR 3823181-3823214 34 NZ_CP020426 Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence 8248-8281 2 0.941
NZ_CP010888_19 19.18|3823244|38|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR 3823244-3823281 38 NC_028958 Clostridium phage phiCD146, complete genome 14300-14337 2 0.947
NZ_CP010888_7 7.6|1824214|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1824214-1824249 36 NC_028958 Clostridium phage phiCD146, complete genome 4438-4473 3 0.917
NZ_CP010888_7 7.11|1824542|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1824542-1824577 36 AY855346 Clostridium difficile bacteriophage phi CD119, complete genome 31152-31187 3 0.917
NZ_CP010888_7 7.11|1824542|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1824542-1824577 36 NC_007917 Clostridium phage phi CD119, complete genome 31152-31187 3 0.917
NZ_CP010888_9 9.6|2176514|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2176514-2176550 37 NC_028905 Clostridium phage phiCD111, complete genome 30665-30701 3 0.919
NZ_CP010888_19 19.18|3823244|38|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR 3823244-3823281 38 KU057941 Clostridium phage CDSH1, complete genome 14795-14832 3 0.921
NZ_CP010888_19 19.18|3823244|38|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR 3823244-3823281 38 LN881738 Escherichia phage slur17, complete genome 5605-5642 3 0.921
NZ_CP010888_19 19.18|3823244|38|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR 3823244-3823281 38 HM568888 Clostridium phage phiCD38-2, complete genome 14291-14328 3 0.921
NZ_CP010888_10 10.5|2353947|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2353947-2353982 36 HG531805 Clostridium phage CDMH1 complete genome 9723-9758 4 0.889
NZ_CP010888_7 7.1|1823882|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1823882-1823918 37 KX905163 Clostridioides phage phiSemix9P1, complete genome 7682-7718 5 0.865
NZ_CP010888_9 9.6|2176514|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2176514-2176550 37 KU057941 Clostridium phage CDSH1, complete genome 30871-30907 5 0.865
NZ_CP010888_9 9.6|2176514|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2176514-2176550 37 LN881738 Escherichia phage slur17, complete genome 31149-31185 5 0.865
NZ_CP010888_9 9.6|2176514|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2176514-2176550 37 GU949551 Clostridium phage phiCD6356, complete genome 26150-26186 5 0.865
NZ_CP010888_9 9.6|2176514|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2176514-2176550 37 HM568888 Clostridium phage phiCD38-2, complete genome 30363-30399 5 0.865
NZ_CP010888_2 2.1|648377|29|NZ_CP010888|CRISPRCasFinder 648377-648405 29 KY971610 Pseudomonas phage PspYZU05, complete genome 134239-134267 6 0.793
NZ_CP010888_11 11.2|2692929|30|NZ_CP010888|PILER-CR 2692929-2692958 30 MN694267 Marine virus AFVG_250M705, complete genome 29033-29062 6 0.8
NZ_CP010888_12 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder 3074549-3074582 34 NC_015427 Clostridium botulinum BKT015925 plasmid p4BKT015925, complete sequence 5590-5623 7 0.794
NZ_CP010888_12 12.18|3074549|35|NZ_CP010888|CRT,PILER-CR 3074549-3074583 35 MN692946 Marine virus AFVG_117M27, complete genome 613-647 7 0.8
NZ_CP010888_12 12.18|3074549|35|NZ_CP010888|CRT,PILER-CR 3074549-3074583 35 MN694368 Marine virus AFVG_250M429, complete genome 613-647 7 0.8
NZ_CP010888_7 7.7|1824279|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1824279-1824314 36 NC_028905 Clostridium phage phiCD111, complete genome 15699-15734 8 0.778
NZ_CP010888_9 9.3|2176316|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2176316-2176351 36 FJ870916 Sulfolobus spindle-shaped virus 7, complete genome 9145-9180 8 0.778
NZ_CP010888_10 10.15|2354607|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2354607-2354642 36 NZ_LR134399 Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence 251200-251235 8 0.778
NZ_CP010888_10 10.16|2354672|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2354672-2354708 37 NZ_CP017256 Clostridium taeniosporum strain 1/k plasmid pCt3, complete sequence 5594-5630 8 0.784
NZ_CP010888_12 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder 3074549-3074582 34 MK448694 Streptococcus phage Javan179, complete genome 1715-1748 8 0.765
NZ_CP010888_12 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder 3074549-3074582 34 MN692965 Marine virus AFVG_117M92, complete genome 20508-20541 8 0.765
NZ_CP010888_12 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder 3074549-3074582 34 MN693940 Marine virus AFVG_250M588, complete genome 9774-9807 8 0.765
NZ_CP010888_12 12.18|3074549|35|NZ_CP010888|CRT,PILER-CR 3074549-3074583 35 NC_015427 Clostridium botulinum BKT015925 plasmid p4BKT015925, complete sequence 5589-5623 8 0.771
NZ_CP010888_12 12.18|3074549|35|NZ_CP010888|CRT,PILER-CR 3074549-3074583 35 KP027447 Staphylococcus phage phiIPLA-C1C, complete genome 118206-118240 8 0.771
NZ_CP010888_12 12.18|3074549|35|NZ_CP010888|CRT,PILER-CR 3074549-3074583 35 MH321491 Staphylococcus phage Twillingate, complete genome 11195-11229 8 0.771
NZ_CP010888_12 12.18|3074549|35|NZ_CP010888|CRT,PILER-CR 3074549-3074583 35 MK448694 Streptococcus phage Javan179, complete genome 1715-1749 8 0.771
NZ_CP010888_4 4.5|1661767|35|NZ_CP010888|CRISPRCasFinder 1661767-1661801 35 NZ_CP045274 Bacillus megaterium strain FDU301 plasmid pFDU301B, complete sequence 47034-47068 9 0.743
NZ_CP010888_8 8.1|2036310|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2036310-2036345 36 NC_011247 Borrelia duttonii Ly plasmid pl165, complete sequence 20564-20599 9 0.75
NZ_CP010888_10 10.16|2354672|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2354672-2354708 37 NZ_CP047434 Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6 24856-24892 9 0.757
NZ_CP010888_12 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder 3074549-3074582 34 MN692946 Marine virus AFVG_117M27, complete genome 614-647 9 0.735
NZ_CP010888_12 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder 3074549-3074582 34 MN694368 Marine virus AFVG_250M429, complete genome 614-647 9 0.735
NZ_CP010888_12 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder 3074549-3074582 34 NZ_CP015336 Borrelia hermsii HS1 isolate Browne Mountain plasmid lpF27, complete sequence 10809-10842 9 0.735
NZ_CP010888_12 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder 3074549-3074582 34 NZ_CP015634 Borrelia turicatae strain BTE5EL plasmid lp40 22354-22387 9 0.735
NZ_CP010888_12 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder 3074549-3074582 34 KP027447 Staphylococcus phage phiIPLA-C1C, complete genome 118207-118240 9 0.735
NZ_CP010888_12 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder 3074549-3074582 34 MH321491 Staphylococcus phage Twillingate, complete genome 11196-11229 9 0.735
NZ_CP010888_12 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder 3074549-3074582 34 NC_013793 Bacillus pseudofirmus OF4 plasmid pBpOF4-02, complete sequence 15045-15078 9 0.735
NZ_CP010888_12 12.9|3074612|37|NZ_CP010888|CRISPRCasFinder 3074612-3074648 37 NZ_LR134399 Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence 251199-251235 9 0.757
NZ_CP010888_19 19.3|3822264|37|NZ_CP010888|CRISPRCasFinder,CRT 3822264-3822300 37 KU599886 Flavobacterium phage Fpv20, complete genome 6846-6882 9 0.757
NZ_CP010888_19 19.3|3822264|37|NZ_CP010888|CRISPRCasFinder,CRT 3822264-3822300 37 NC_031931 Flavobacterium phage Fpv2, complete genome 6845-6881 9 0.757
NZ_CP010888_19 19.3|3822264|37|NZ_CP010888|CRISPRCasFinder,CRT 3822264-3822300 37 KT876726 Flavobacterium phage FpV21, complete genome 6847-6883 9 0.757
NZ_CP010888_19 19.3|3822264|37|NZ_CP010888|CRISPRCasFinder,CRT 3822264-3822300 37 KU599877 Flavobacterium phage Fpv1, complete genome 6846-6882 9 0.757
NZ_CP010888_19 19.3|3822264|37|NZ_CP010888|CRISPRCasFinder,CRT 3822264-3822300 37 MK764449 Flavobacterium phage FPSV-S29, complete genome 7079-7115 9 0.757
NZ_CP010888_19 19.3|3822264|37|NZ_CP010888|CRISPRCasFinder,CRT 3822264-3822300 37 MK764441 Flavobacterium phage FPSV-F12, complete genome 9165-9201 9 0.757
NZ_CP010888_19 19.17|3823181|34|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR 3823181-3823214 34 NZ_CP030933 Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence 562850-562883 9 0.735
NZ_CP010888_4 4.5|1661767|35|NZ_CP010888|CRISPRCasFinder 1661767-1661801 35 NC_022783 Bacillus toyonensis BCT-7112 plasmid pBCT8, complete sequence 481-515 10 0.714
NZ_CP010888_4 4.5|1661767|35|NZ_CP010888|CRISPRCasFinder 1661767-1661801 35 NC_019526 Enterobacteria phage vB_KleM-RaK2, complete genome 17188-17222 10 0.714
NZ_CP010888_4 4.5|1661767|35|NZ_CP010888|CRISPRCasFinder 1661767-1661801 35 MT708547 Klebsiella phage Muenster, complete genome 139287-139321 10 0.714
NZ_CP010888_4 4.5|1661767|35|NZ_CP010888|CRISPRCasFinder 1661767-1661801 35 AB897757 Klebsiella phage K64-1 DNA, complete genome 17165-17199 10 0.714
NZ_CP010888_4 4.10|1661766|36|NZ_CP010888|CRT 1661766-1661801 36 NZ_CP045274 Bacillus megaterium strain FDU301 plasmid pFDU301B, complete sequence 47033-47068 10 0.722
NZ_CP010888_6 6.3|1665699|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 1665699-1665734 36 AP013642 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C42-MedDCM-OCT-S37-C124, *** SEQUENCING IN PROGRESS *** 9700-9735 10 0.722
NZ_CP010888_10 10.16|2354672|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2354672-2354708 37 NZ_CP035115 Lactobacillus plantarum strain SRCM103295 plasmid unnamed2 17114-17150 10 0.73
NZ_CP010888_10 10.16|2354672|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2354672-2354708 37 NZ_CP035567 Lactobacillus plantarum strain SRCM103300 plasmid unnamed1 50389-50425 10 0.73
NZ_CP010888_12 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder 3074549-3074582 34 NC_047948 Staphylococcus phage phiSA_BS2, complete genome 6804-6837 10 0.706
NZ_CP010888_12 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder 3074549-3074582 34 MH078572 Staphylococcus phage phiSA_BS1, complete genome 109382-109415 10 0.706
NZ_CP010888_12 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder 3074549-3074582 34 NZ_KX711616 Bacillus subtilis strain 72 plasmid pBS72, complete sequence 68206-68239 10 0.706
NZ_CP010888_12 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder 3074549-3074582 34 NZ_CP021643 Campylobacter concisus strain P2CDO4 plasmid pICON, complete sequence 83030-83063 10 0.706
NZ_CP010888_12 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder 3074549-3074582 34 NZ_CP024793 Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence 276716-276749 10 0.706
NZ_CP010888_12 12.18|3074549|35|NZ_CP010888|CRT,PILER-CR 3074549-3074583 35 NC_047948 Staphylococcus phage phiSA_BS2, complete genome 6804-6838 10 0.714
NZ_CP010888_12 12.18|3074549|35|NZ_CP010888|CRT,PILER-CR 3074549-3074583 35 MH078572 Staphylococcus phage phiSA_BS1, complete genome 109382-109416 10 0.714
NZ_CP010888_12 12.18|3074549|35|NZ_CP010888|CRT,PILER-CR 3074549-3074583 35 NZ_CP015336 Borrelia hermsii HS1 isolate Browne Mountain plasmid lpF27, complete sequence 10808-10842 10 0.714
NZ_CP010888_12 12.18|3074549|35|NZ_CP010888|CRT,PILER-CR 3074549-3074583 35 NZ_CP015634 Borrelia turicatae strain BTE5EL plasmid lp40 22353-22387 10 0.714
NZ_CP010888_10 10.2|2353749|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT 2353749-2353785 37 NC_014634 Ilyobacter polytropus DSM 2926 plasmid pILYOP02, complete sequence 90192-90228 11 0.703
NZ_CP010888_12 12.18|3074549|35|NZ_CP010888|CRT,PILER-CR 3074549-3074583 35 NZ_KX711616 Bacillus subtilis strain 72 plasmid pBS72, complete sequence 68205-68239 11 0.686
NZ_CP010888_19 19.14|3822984|36|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR 3822984-3823019 36 NC_007581 Clostridium phage c-st, complete genome 156694-156729 11 0.694
NZ_CP010888_19 19.14|3822984|36|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR 3822984-3823019 36 AP008983 Clostridium phage c-st genomic DNA, complete genome 156694-156729 11 0.694

1. spacer 2.1|648377|29|NZ_CP010888|CRISPRCasFinder matches to NZ_CP033215 (Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tgtaataagttaaagcaatatgaatcaac	CRISPR spacer
tgtaataagttaaagcaatatgaatcaac	Protospacer
*****************************

2. spacer 4.3|1661635|36|NZ_CP010888|PILER-CR,CRISPRCasFinder matches to JX145342 (Clostridium phage phiMMP04, complete genome) position: , mismatch: 0, identity: 1.0

agcttgatagtatccaccctccatggcattgtttga	CRISPR spacer
agcttgatagtatccaccctccatggcattgtttga	Protospacer
************************************

3. spacer 4.8|1661634|37|NZ_CP010888|CRT matches to JX145342 (Clostridium phage phiMMP04, complete genome) position: , mismatch: 0, identity: 1.0

tagcttgatagtatccaccctccatggcattgtttga	CRISPR spacer
tagcttgatagtatccaccctccatggcattgtttga	Protospacer
*************************************

4. spacer 6.2|1665633|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to MK473382 (Clostridium phage JD032, complete genome) position: , mismatch: 0, identity: 1.0

tcatctaaaagtttagcccaagtttgaactgctatc	CRISPR spacer
tcatctaaaagtttagcccaagtttgaactgctatc	Protospacer
************************************

5. spacer 6.2|1665633|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NC_048665 (Clostridium phage phiCDHM14, complete genome) position: , mismatch: 0, identity: 1.0

tcatctaaaagtttagcccaagtttgaactgctatc	CRISPR spacer
tcatctaaaagtttagcccaagtttgaactgctatc	Protospacer
************************************

6. spacer 6.2|1665633|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NC_028838 (Clostridium phage phiCD506, complete genome) position: , mismatch: 0, identity: 1.0

tcatctaaaagtttagcccaagtttgaactgctatc	CRISPR spacer
tcatctaaaagtttagcccaagtttgaactgctatc	Protospacer
************************************

7. spacer 6.2|1665633|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to HG796225 (Clostridium phage phiCDHM13 complete genome) position: , mismatch: 0, identity: 1.0

tcatctaaaagtttagcccaagtttgaactgctatc	CRISPR spacer
tcatctaaaagtttagcccaagtttgaactgctatc	Protospacer
************************************

8. spacer 6.2|1665633|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to HG798901 (Clostridium phage phiCDHM11 complete genome) position: , mismatch: 0, identity: 1.0

tcatctaaaagtttagcccaagtttgaactgctatc	CRISPR spacer
tcatctaaaagtttagcccaagtttgaactgctatc	Protospacer
************************************

9. spacer 6.8|1666032|36|NZ_CP010888|CRISPRCasFinder,CRT matches to HG531805 (Clostridium phage CDMH1 complete genome) position: , mismatch: 0, identity: 1.0

atgtgttgaagcagaagcttttgagaatggtttaga	CRISPR spacer
atgtgttgaagcagaagcttttgagaatggtttaga	Protospacer
************************************

10. spacer 7.1|1823882|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to FN668942 (Clostridium difficile BI1 plasmid pCDBI1, complete sequence) position: , mismatch: 0, identity: 1.0

gcaataaaacctgctattcttggtagaaattcatttg	CRISPR spacer
gcaataaaacctgctattcttggtagaaattcatttg	Protospacer
*************************************

11. spacer 7.5|1824148|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 0, identity: 1.0

ttgcacttgaatagttctgaagaacttaagaactatg	CRISPR spacer
ttgcacttgaatagttctgaagaacttaagaactatg	Protospacer
*************************************

12. spacer 7.6|1824214|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 0, identity: 1.0

agctttacaatatcaaagaaaaattgaaacatctat	CRISPR spacer
agctttacaatatcaaagaaaaattgaaacatctat	Protospacer
************************************

13. spacer 9.6|2176514|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to JX145342 (Clostridium phage phiMMP04, complete genome) position: , mismatch: 0, identity: 1.0

gctaatatgttaagtaaaaaattatccatacatattc	CRISPR spacer
gctaatatgttaagtaaaaaattatccatacatattc	Protospacer
*************************************

14. spacer 9.8|2176645|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 0, identity: 1.0

cttataacacttcctctcttaattctgcattaagcag	CRISPR spacer
cttataacacttcctctcttaattctgcattaagcag	Protospacer
*************************************

15. spacer 10.2|2353749|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to HG796225 (Clostridium phage phiCDHM13 complete genome) position: , mismatch: 0, identity: 1.0

tccaaaattttaactttttctttttctaaatctttat	CRISPR spacer
tccaaaattttaactttttctttttctaaatctttat	Protospacer
*************************************

16. spacer 10.16|2354672|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF547664 (Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence) position: , mismatch: 0, identity: 1.0

tcaatatctatattaagtttatttttaaaaacatctt	CRISPR spacer
tcaatatctatattaagtttatttttaaaaacatctt	Protospacer
*************************************

17. spacer 12.4|3074287|36|NZ_CP010888|CRISPRCasFinder matches to NZ_MF547664 (Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence) position: , mismatch: 0, identity: 1.0

aagacttaacacagtaactaaactgtacataattgg	CRISPR spacer
aagacttaacacagtaactaaactgtacataattgg	Protospacer
************************************

18. spacer 12.14|3074287|37|NZ_CP010888|CRT,PILER-CR matches to NZ_MF547664 (Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence) position: , mismatch: 0, identity: 1.0

aagacttaacacagtaactaaactgtacataattggt	CRISPR spacer
aagacttaacacagtaactaaactgtacataattggt	Protospacer
*************************************

19. spacer 19.7|3822526|36|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 0, identity: 1.0

aaatgaagcattgagtttaaatagcgatattagaaa	CRISPR spacer
aaatgaagcattgagtttaaatagcgatattagaaa	Protospacer
************************************

20. spacer 19.8|3822591|37|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 0, identity: 1.0

ttcaatgaactagggtttaaaatacattctagcccga	CRISPR spacer
ttcaatgaactagggtttaaaatacattctagcccga	Protospacer
*************************************

21. spacer 19.8|3822591|37|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 0, identity: 1.0

ttcaatgaactagggtttaaaatacattctagcccga	CRISPR spacer
ttcaatgaactagggtttaaaatacattctagcccga	Protospacer
*************************************

22. spacer 19.8|3822591|37|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 0, identity: 1.0

ttcaatgaactagggtttaaaatacattctagcccga	CRISPR spacer
ttcaatgaactagggtttaaaatacattctagcccga	Protospacer
*************************************

23. spacer 19.8|3822591|37|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 0, identity: 1.0

ttcaatgaactagggtttaaaatacattctagcccga	CRISPR spacer
ttcaatgaactagggtttaaaatacattctagcccga	Protospacer
*************************************

24. spacer 19.10|3822722|37|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 0, identity: 1.0

taatagaattatagcatcaactaatcgtaaaatattt	CRISPR spacer
taatagaattatagcatcaactaatcgtaaaatattt	Protospacer
*************************************

25. spacer 19.10|3822722|37|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 0, identity: 1.0

taatagaattatagcatcaactaatcgtaaaatattt	CRISPR spacer
taatagaattatagcatcaactaatcgtaaaatattt	Protospacer
*************************************

26. spacer 19.20|3823376|36|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 0, identity: 1.0

tccatttattttatatattaaaattatagcattcga	CRISPR spacer
tccatttattttatatattaaaattatagcattcga	Protospacer
************************************

27. spacer 19.20|3823376|36|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 0, identity: 1.0

tccatttattttatatattaaaattatagcattcga	CRISPR spacer
tccatttattttatatattaaaattatagcattcga	Protospacer
************************************

28. spacer 19.20|3823376|36|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 0, identity: 1.0

tccatttattttatatattaaaattatagcattcga	CRISPR spacer
tccatttattttatatattaaaattatagcattcga	Protospacer
************************************

29. spacer 19.20|3823376|36|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 0, identity: 1.0

tccatttattttatatattaaaattatagcattcga	CRISPR spacer
tccatttattttatatattaaaattatagcattcga	Protospacer
************************************

30. spacer 19.20|3823376|36|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 0, identity: 1.0

tccatttattttatatattaaaattatagcattcga	CRISPR spacer
tccatttattttatatattaaaattatagcattcga	Protospacer
************************************

31. spacer 1.1|632915|34|NZ_CP010888|CRISPRCasFinder matches to NZ_CP033215 (Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.971

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacacatgtgaagtttgtttgttggcgc	Protospacer
*********.************************

32. spacer 3.1|650392|34|NZ_CP010888|CRISPRCasFinder matches to NZ_CP033215 (Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.971

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacacatgtgaagtttgtttgttggcgc	Protospacer
*********.************************

33. spacer 4.1|1661504|35|NZ_CP010888|PILER-CR,CRISPRCasFinder matches to KX905163 (Clostridioides phage phiSemix9P1, complete genome) position: , mismatch: 1, identity: 0.971

aaatatagcttcttctccataactataagttgcat	CRISPR spacer
aaatatagcttcttctccatgactataagttgcat	Protospacer
********************.**************

34. spacer 4.6|1661503|36|NZ_CP010888|CRT matches to KX905163 (Clostridioides phage phiSemix9P1, complete genome) position: , mismatch: 1, identity: 0.972

taaatatagcttcttctccataactataagttgcat	CRISPR spacer
taaatatagcttcttctccatgactataagttgcat	Protospacer
*********************.**************

35. spacer 6.2|1665633|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 1, identity: 0.972

tcatctaaaagtttagcccaagtttgaactgctatc	CRISPR spacer
tcacctaaaagtttagcccaagtttgaactgctatc	Protospacer
***.********************************

36. spacer 6.2|1665633|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 1, identity: 0.972

tcatctaaaagtttagcccaagtttgaactgctatc	CRISPR spacer
tcacctaaaagtttagcccaagtttgaactgctatc	Protospacer
***.********************************

37. spacer 6.2|1665633|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 1, identity: 0.972

tcatctaaaagtttagcccaagtttgaactgctatc	CRISPR spacer
tcatccaaaagtttagcccaagtttgaactgctatc	Protospacer
*****.******************************

38. spacer 6.2|1665633|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 1, identity: 0.972

tcatctaaaagtttagcccaagtttgaactgctatc	CRISPR spacer
tcacctaaaagtttagcccaagtttgaactgctatc	Protospacer
***.********************************

39. spacer 6.2|1665633|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 1, identity: 0.972

tcatctaaaagtttagcccaagtttgaactgctatc	CRISPR spacer
tcacctaaaagtttagcccaagtttgaactgctatc	Protospacer
***.********************************

40. spacer 6.2|1665633|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to LN681538 (Clostridium phage phiCD481-1, complete genome) position: , mismatch: 1, identity: 0.972

tcatctaaaagtttagcccaagtttgaactgctatc	CRISPR spacer
tcacctaaaagtttagcccaagtttgaactgctatc	Protospacer
***.********************************

41. spacer 6.8|1666032|36|NZ_CP010888|CRISPRCasFinder,CRT matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 1, identity: 0.972

atgtgttgaagcagaagcttttgagaatggtttaga	CRISPR spacer
atgtgttgaagcagaagcttttgaaaatggtttaga	Protospacer
************************.***********

42. spacer 7.1|1823882|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020425 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.973

gcaataaaacctgctattcttggtagaaattcatttg	CRISPR spacer
gcaataaaacctgctattcttggcagaaattcatttg	Protospacer
***********************.*************

43. spacer 7.1|1823882|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011969 (Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.973

gcaataaaacctgctattcttggtagaaattcatttg	CRISPR spacer
gcaataaaacctgctattcttggcagaaattcatttg	Protospacer
***********************.*************

44. spacer 7.1|1823882|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029156 (Clostridioides difficile strain CD161 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.973

gcaataaaacctgctattcttggtagaaattcatttg	CRISPR spacer
gcaataaaacctgctattcttggcagaaattcatttg	Protospacer
***********************.*************

45. spacer 7.1|1823882|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029153 (Clostridioides difficile strain CDT4 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.973

gcaataaaacctgctattcttggtagaaattcatttg	CRISPR spacer
gcaataaaacctgctattcttggcagaaattcatttg	Protospacer
***********************.*************

46. spacer 7.7|1824279|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 1, identity: 0.972

ggaaaattatgggaaaagtttacagatatcatgaga	CRISPR spacer
ggaaaattatgggaaaagtttacagatatcatggga	Protospacer
*********************************.**

47. spacer 7.7|1824279|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 1, identity: 0.972

ggaaaattatgggaaaagtttacagatatcatgaga	CRISPR spacer
ggaaaattatgggaaaagtttacagatatcatggga	Protospacer
*********************************.**

48. spacer 7.7|1824279|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 1, identity: 0.972

ggaaaattatgggaaaagtttacagatatcatgaga	CRISPR spacer
ggaaaattatgggaaaagtttacagatatcatggga	Protospacer
*********************************.**

49. spacer 9.10|2176777|38|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to AY855346 (Clostridium difficile bacteriophage phi CD119, complete genome) position: , mismatch: 1, identity: 0.974

tatgtaaaaaataaaataaataaaagtaacactttata	CRISPR spacer
tatataaaaaataaaataaataaaagtaacactttata	Protospacer
***.**********************************

50. spacer 9.10|2176777|38|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NC_007917 (Clostridium phage phi CD119, complete genome) position: , mismatch: 1, identity: 0.974

tatgtaaaaaataaaataaataaaagtaacactttata	CRISPR spacer
tatataaaaaataaaataaataaaagtaacactttata	Protospacer
***.**********************************

51. spacer 9.10|2176777|38|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NC_028996 (Clostridium phage phiCDHM19, complete genome) position: , mismatch: 1, identity: 0.974

tatgtaaaaaataaaataaataaaagtaacactttata	CRISPR spacer
tatataaaaaataaaataaataaaagtaacactttata	Protospacer
***.**********************************

52. spacer 10.2|2353749|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NC_028838 (Clostridium phage phiCD506, complete genome) position: , mismatch: 1, identity: 0.973

tccaaaattttaactttttctttttctaaatctttat	CRISPR spacer
tctaaaattttaactttttctttttctaaatctttat	Protospacer
**.**********************************

53. spacer 10.2|2353749|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to LN681538 (Clostridium phage phiCD481-1, complete genome) position: , mismatch: 1, identity: 0.973

tccaaaattttaactttttctttttctaaatctttat	CRISPR spacer
tctaaaattttaactttttctttttctaaatctttat	Protospacer
**.**********************************

54. spacer 10.2|2353749|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NC_048665 (Clostridium phage phiCDHM14, complete genome) position: , mismatch: 1, identity: 0.973

tccaaaattttaactttttctttttc-taaatctttat	CRISPR spacer
tccaaaattttaactttttctttttcttaaatcttta-	Protospacer
************************** ********** 

55. spacer 10.2|2353749|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to HG798901 (Clostridium phage phiCDHM11 complete genome) position: , mismatch: 1, identity: 0.973

tccaaaattttaactttttctttttc-taaatctttat	CRISPR spacer
tccaaaattttaactttttctttttcttaaatcttta-	Protospacer
************************** ********** 

56. spacer 12.3|3074221|37|NZ_CP010888|CRISPRCasFinder matches to JX145342 (Clostridium phage phiMMP04, complete genome) position: , mismatch: 1, identity: 0.973

aagcatatacacatgtcagaagatatttataaaagga	CRISPR spacer
aagcatatacacatgtcagaagatatttataaaaggt	Protospacer
************************************ 

57. spacer 12.5|3074352|38|NZ_CP010888|CRISPRCasFinder matches to NZ_MF547664 (Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence) position: , mismatch: 1, identity: 0.974

gatataataatgaaacctttttttaaacttattttctt	CRISPR spacer
gatagaataatgaaacctttttttaaacttattttctt	Protospacer
**** *********************************

58. spacer 19.10|3822722|37|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 1, identity: 0.973

taatagaattatagcatcaactaatcgtaaaatattt	CRISPR spacer
taatagaattatagcatcaactaatcgtaaaattttt	Protospacer
********************************* ***

59. spacer 19.10|3822722|37|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 1, identity: 0.973

taatagaattatagcatcaactaatcgtaaaatattt	CRISPR spacer
taatagaattatagcatcaactaatcgtaaaattttt	Protospacer
********************************* ***

60. spacer 19.10|3822722|37|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 1, identity: 0.973

taatagaattatagcatcaactaatcgtaaaatattt	CRISPR spacer
taatagaattatagcatcaactaatcgtaaaattttt	Protospacer
********************************* ***

61. spacer 19.26|3823769|37|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 1, identity: 0.973

taaatttaaaataaattattaaatatccgaaaaaatt	CRISPR spacer
taaatttaaaataaattattaaatatccgaaaatatt	Protospacer
********************************* ***

62. spacer 19.26|3823769|37|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR matches to JX145342 (Clostridium phage phiMMP04, complete genome) position: , mismatch: 1, identity: 0.973

taaatttaaaataaattattaaatatccgaaaaaatt	CRISPR spacer
taaatttaaaataaattattaaatatccgaaaacatt	Protospacer
********************************* ***

63. spacer 4.1|1661504|35|NZ_CP010888|PILER-CR,CRISPRCasFinder matches to FN668942 (Clostridium difficile BI1 plasmid pCDBI1, complete sequence) position: , mismatch: 2, identity: 0.943

aaatatagcttcttctccataactataagttgcat	CRISPR spacer
aaatacagcttcttctccatgactataagttgcat	Protospacer
*****.**************.**************

64. spacer 4.5|1661767|35|NZ_CP010888|CRISPRCasFinder matches to NZ_MG973074 (Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence) position: , mismatch: 2, identity: 0.943

gctgtgatttcactaataaaacaattaataattgt	CRISPR spacer
gctgtgattttattaataaaacaattaataattgt	Protospacer
**********.*.**********************

65. spacer 4.6|1661503|36|NZ_CP010888|CRT matches to FN668942 (Clostridium difficile BI1 plasmid pCDBI1, complete sequence) position: , mismatch: 2, identity: 0.944

taaatatagcttcttctccataactataagttgcat	CRISPR spacer
taaatacagcttcttctccatgactataagttgcat	Protospacer
******.**************.**************

66. spacer 4.10|1661766|36|NZ_CP010888|CRT matches to NZ_MG973074 (Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence) position: , mismatch: 2, identity: 0.944

tgctgtgatttcactaataaaacaattaataattgt	CRISPR spacer
tgctgtgattttattaataaaacaattaataattgt	Protospacer
***********.*.**********************

67. spacer 7.5|1824148|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 2, identity: 0.946

ttgcacttgaatagttctgaagaacttaagaactatg	CRISPR spacer
atacacttgaatagttctgaagaacttaagaactatg	Protospacer
 *.**********************************

68. spacer 7.5|1824148|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 2, identity: 0.946

ttgcacttgaatagttctgaagaacttaagaactatg	CRISPR spacer
atacacttgaatagttctgaagaacttaagaactatg	Protospacer
 *.**********************************

69. spacer 7.5|1824148|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 2, identity: 0.946

ttgcacttgaatagttctgaagaacttaagaactatg	CRISPR spacer
atacacttgaatagttctgaagaacttaagaactatg	Protospacer
 *.**********************************

70. spacer 7.5|1824148|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to LN680008 (Clostridium phage phiCDHS1 gp04 gene for putative capsid protein) position: , mismatch: 2, identity: 0.946

ttgcacttgaatagttctgaagaacttaagaactatg	CRISPR spacer
atacacttgaatagttctgaagaacttaagaactatg	Protospacer
 *.**********************************

71. spacer 7.5|1824148|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 2, identity: 0.946

ttgcacttgaatagttctgaagaacttaagaactatg	CRISPR spacer
atacacttgaatagttctgaagaacttaagaactatg	Protospacer
 *.**********************************

72. spacer 7.10|1824476|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 2, identity: 0.946

gactctgccatccctgtaacgaacagccttacagcaa	CRISPR spacer
gattctgccatccctgtgacgaacagccttacagcaa	Protospacer
**.**************.*******************

73. spacer 7.10|1824476|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 2, identity: 0.946

gactctgccatccctgtaacgaacagccttacagcaa	CRISPR spacer
gattctgccatccctgtgacgaacagccttacagcaa	Protospacer
**.**************.*******************

74. spacer 7.10|1824476|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 2, identity: 0.946

gactctgccatccctgtaacgaacagccttacagcaa	CRISPR spacer
gattctgccatccctgtgacgaacagccttacagcaa	Protospacer
**.**************.*******************

75. spacer 7.11|1824542|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NC_028996 (Clostridium phage phiCDHM19, complete genome) position: , mismatch: 2, identity: 0.944

aacaaaaaagatacatctgtaactaatttttatact	CRISPR spacer
agtaaaaaagatacatctgtaactaatttttatact	Protospacer
*..*********************************

76. spacer 9.11|2176844|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG973074 (Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence) position: , mismatch: 2, identity: 0.946

agcaattctgatatttttattctaatcatttgaaatc	CRISPR spacer
agcaattctgatatttttattctgatcatttaaaatc	Protospacer
***********************.*******.*****

77. spacer 9.12|2176910|38|NZ_CP010888|CRISPRCasFinder,CRT matches to NZ_MG973074 (Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence) position: , mismatch: 2, identity: 0.947

ccatcttttgttgctttacataaatttatattacttac	CRISPR spacer
ccatcttttgttgctttgcatagatttatattacttac	Protospacer
*****************.****.***************

78. spacer 10.2|2353749|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to MK473382 (Clostridium phage JD032, complete genome) position: , mismatch: 2, identity: 0.946

tccaaaattttaactttttctttttctaaatctttat	CRISPR spacer
tctagaattttaactttttctttttctaaatctttat	Protospacer
**.*.********************************

79. spacer 10.12|2354410|35|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 2, identity: 0.943

tgaactttaatcggttttatacaacaatataacgc	CRISPR spacer
tgaactttaaccggttttatgcaacaatataacgc	Protospacer
**********.*********.**************

80. spacer 10.12|2354410|35|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 2, identity: 0.943

tgaactttaatcggttttatacaacaatataacgc	CRISPR spacer
tgaactttaaccggttttatgcaacaatataacgc	Protospacer
**********.*********.**************

81. spacer 10.12|2354410|35|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 2, identity: 0.943

tgaactttaatcggttttatacaacaatataacgc	CRISPR spacer
tgaactttaaccggttttatgcaacaatataacgc	Protospacer
**********.*********.**************

82. spacer 10.12|2354410|35|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 2, identity: 0.943

tgaactttaatcggttttatacaacaatataacgc	CRISPR spacer
tgaactttaaccggttttatgcaacaatataacgc	Protospacer
**********.*********.**************

83. spacer 11.1|2692857|36|NZ_CP010888|PILER-CR matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 2, identity: 0.944

taagactagcagactcataagcaattagttgcctct	CRISPR spacer
taagaccagcagactcataagcaattagttgtctct	Protospacer
******.************************.****

84. spacer 11.1|2692857|36|NZ_CP010888|PILER-CR matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 2, identity: 0.944

taagactagcagactcataagcaattagttgcctct	CRISPR spacer
taagaccagcagactcataagcaattagttgtctct	Protospacer
******.************************.****

85. spacer 11.1|2692857|36|NZ_CP010888|PILER-CR matches to LN680008 (Clostridium phage phiCDHS1 gp04 gene for putative capsid protein) position: , mismatch: 2, identity: 0.944

taagactagcagactcataagcaattagttgcctct	CRISPR spacer
taagaccagcagactcataagcaattagttgtctct	Protospacer
******.************************.****

86. spacer 11.1|2692857|36|NZ_CP010888|PILER-CR matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 2, identity: 0.944

taagactagcagactcataagcaattagttgcctct	CRISPR spacer
taagaccagcagactcataagcaattagttgtctct	Protospacer
******.************************.****

87. spacer 12.1|3074091|36|NZ_CP010888|CRISPRCasFinder matches to NZ_MG973074 (Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence) position: , mismatch: 2, identity: 0.944

acaattattaattgttttattattgaaatcacagca	CRISPR spacer
acaattattaattgttttattaataaaatcacagca	Protospacer
********************** *.***********

88. spacer 12.11|3074091|37|NZ_CP010888|CRT matches to NZ_MG973074 (Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence) position: , mismatch: 2, identity: 0.946

acaattattaattgttttattattgaaatcacagcaa	CRISPR spacer
acaattattaattgttttattaataaaatcacagcaa	Protospacer
********************** *.************

89. spacer 12.13|3074221|38|NZ_CP010888|CRT,PILER-CR matches to JX145342 (Clostridium phage phiMMP04, complete genome) position: , mismatch: 2, identity: 0.947

aagcatatacacatgtcagaagatatttataaaaggat	CRISPR spacer
aagcatatacacatgtcagaagatatttataaaaggtg	Protospacer
************************************  

90. spacer 12.15|3074352|39|NZ_CP010888|CRT,PILER-CR matches to NZ_MF547664 (Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence) position: , mismatch: 2, identity: 0.949

gatataataatgaaacctttttttaaacttattttcttt	CRISPR spacer
gatagaataatgaaacctttttttaaacttattttctta	Protospacer
**** ********************************* 

91. spacer 19.17|3823181|34|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 2, identity: 0.941

atatttaaagcaagtacttttttaagaaaactta	CRISPR spacer
acatttaaagcaagtacctttttaagaaaactta	Protospacer
*.***************.****************

92. spacer 19.17|3823181|34|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR matches to CP011970 (Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence) position: , mismatch: 2, identity: 0.941

atatttaaagcaagtacttttttaagaaaactta	CRISPR spacer
acatttaaagcaagtacctttttaagaaaactta	Protospacer
*.***************.****************

93. spacer 19.17|3823181|34|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR matches to LN681537 (Clostridium phage phiCD211, complete genome) position: , mismatch: 2, identity: 0.941

atatttaaagcaagtacttttttaagaaaactta	CRISPR spacer
acatttaaagcaagtacctttttaagaaaactta	Protospacer
*.***************.****************

94. spacer 19.17|3823181|34|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020426 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.941

atatttaaagcaagtacttttttaagaaaactta	CRISPR spacer
acatttaaagcaagtacctttttaagaaaactta	Protospacer
*.***************.****************

95. spacer 19.18|3823244|38|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 2, identity: 0.947

atggctaagagatacagataaaaatataaatgaatggt	CRISPR spacer
atggctaagagatacagacaaaaatataaataaatggt	Protospacer
******************.************.******

96. spacer 7.6|1824214|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 3, identity: 0.917

agctttacaatatcaaagaaaaattgaaacatctat	CRISPR spacer
ggctttacaatatcagcgaaaaattgaaacatctat	Protospacer
.**************. *******************

97. spacer 7.11|1824542|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to AY855346 (Clostridium difficile bacteriophage phi CD119, complete genome) position: , mismatch: 3, identity: 0.917

aacaaaaaagatacatctgtaactaatttttatact	CRISPR spacer
agtaaaaaagatacatctgtaactattttttatact	Protospacer
*..********************** **********

98. spacer 7.11|1824542|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NC_007917 (Clostridium phage phi CD119, complete genome) position: , mismatch: 3, identity: 0.917

aacaaaaaagatacatctgtaactaatttttatact	CRISPR spacer
agtaaaaaagatacatctgtaactattttttatact	Protospacer
*..********************** **********

99. spacer 9.6|2176514|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 3, identity: 0.919

gctaatatgttaagtaaaaaattatccatacatattc	CRISPR spacer
gctaatatgttaagtaaaaaattatccatacttcatc	Protospacer
******************************* *  **

100. spacer 19.18|3823244|38|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 3, identity: 0.921

atggctaagagatacagataaaaatataaatgaatggt	CRISPR spacer
atggctaagagatacagacaaaaatataaatgagtggc	Protospacer
******************.**************.***.

101. spacer 19.18|3823244|38|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 3, identity: 0.921

atggctaagagatacagataaaaatataaatgaatggt	CRISPR spacer
atggctaagagatacagacaaaaatataaatgagtggc	Protospacer
******************.**************.***.

102. spacer 19.18|3823244|38|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 3, identity: 0.921

atggctaagagatacagataaaaatataaatgaatggt	CRISPR spacer
atggctaagagatacagacaaaaatataaatgagtggc	Protospacer
******************.**************.***.

103. spacer 10.5|2353947|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to HG531805 (Clostridium phage CDMH1 complete genome) position: , mismatch: 4, identity: 0.889

ctctttagcgcttcttcaagttgtatttgtgtataa	CRISPR spacer
gtttttaaagcttcttcaagttgtatttgtgtataa	Protospacer
 *.****. ***************************

104. spacer 7.1|1823882|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to KX905163 (Clostridioides phage phiSemix9P1, complete genome) position: , mismatch: 5, identity: 0.865

gcaataaaacctgctattcttggtagaaattcatttg	CRISPR spacer
gagataaaacctgctaaccttggtagaaattcattcg	Protospacer
* .************* .*****************.*

105. spacer 9.6|2176514|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 5, identity: 0.865

gctaatatgttaagtaaaaaattatccatacatattc	CRISPR spacer
gctaatacattaagtaaaaaattatccatacttcatc	Protospacer
*******..********************** *  **

106. spacer 9.6|2176514|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 5, identity: 0.865

gctaatatgttaagtaaaaaattatccatacatattc	CRISPR spacer
gctaatacattaagtaaaaaattatccatacttcatc	Protospacer
*******..********************** *  **

107. spacer 9.6|2176514|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 5, identity: 0.865

gctaatatgttaagtaaaaaattatccatacatattc	CRISPR spacer
gctagtatattaagtaaaaaattatccatacttcatc	Protospacer
****.***.********************** *  **

108. spacer 9.6|2176514|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 5, identity: 0.865

gctaatatgttaagtaaaaaattatccatacatattc	CRISPR spacer
gctaatacattaagtaaaaaattatccatacttcatc	Protospacer
*******..********************** *  **

109. spacer 2.1|648377|29|NZ_CP010888|CRISPRCasFinder matches to KY971610 (Pseudomonas phage PspYZU05, complete genome) position: , mismatch: 6, identity: 0.793

tgtaataagttaaagcaatatgaatcaac	CRISPR spacer
tacgataagttacagcaatacgaatcatc	Protospacer
*...******** *******.****** *

110. spacer 11.2|2692929|30|NZ_CP010888|PILER-CR matches to MN694267 (Marine virus AFVG_250M705, complete genome) position: , mismatch: 6, identity: 0.8

tagaggctctcagagaagttataagatgtt	CRISPR spacer
caaaggctcttagagaagttttaagagctt	Protospacer
.*.*******.********* *****  **

111. spacer 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder matches to NC_015427 (Clostridium botulinum BKT015925 plasmid p4BKT015925, complete sequence) position: , mismatch: 7, identity: 0.794

ttaaaaatttttttaacttatattttgagtccaa---	CRISPR spacer
ttaaaaatttttttagcttattttt---gtttaaaac	Protospacer
***************.***** ***   **..**   

112. spacer 12.18|3074549|35|NZ_CP010888|CRT,PILER-CR matches to MN692946 (Marine virus AFVG_117M27, complete genome) position: , mismatch: 7, identity: 0.8

ttaaaaatttttttaacttatattttgagtccaat---	CRISPR spacer
tagaaaattgttttaacttatattttgaa---aatgta	Protospacer
* .****** ******************.   ***   

113. spacer 12.18|3074549|35|NZ_CP010888|CRT,PILER-CR matches to MN694368 (Marine virus AFVG_250M429, complete genome) position: , mismatch: 7, identity: 0.8

ttaaaaatttttttaacttatattttgagtccaat---	CRISPR spacer
tagaaaattgttttaacttatattttgaa---aatgta	Protospacer
* .****** ******************.   ***   

114. spacer 7.7|1824279|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 8, identity: 0.778

ggaaaattatgggaaaagtttacagatatcatgaga	CRISPR spacer
ggaaaattgtgggaaaagtttacggaagttattggg	Protospacer
********.**************.** .*.** .*.

115. spacer 9.3|2176316|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to FJ870916 (Sulfolobus spindle-shaped virus 7, complete genome) position: , mismatch: 8, identity: 0.778

attatcaaa-----atttcttttttcttcttaacacaaaaa	CRISPR spacer
-----caaacagatatttcttttttctttttaaaacaaaac	Protospacer
     ****     **************.**** ****** 

116. spacer 10.15|2354607|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.778

ttcgtaaaataacaattatctggaatatg--agaagtt	CRISPR spacer
tcagtaaaataactattatcaggaatatgctggaaa--	Protospacer
*. ********** ****** ********  .***.  

117. spacer 10.16|2354672|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017256 (Clostridium taeniosporum strain 1/k plasmid pCt3, complete sequence) position: , mismatch: 8, identity: 0.784

tcaatatctatattaagtttatttttaaaaacatctt-----	CRISPR spacer
tcaatatttatattaactttattttta-----gtcttcattt	Protospacer
*******.******** **********     .****     

118. spacer 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder matches to MK448694 (Streptococcus phage Javan179, complete genome) position: , mismatch: 8, identity: 0.765

ttaaaaatttttttaacttatattttgagtccaa	CRISPR spacer
ataaaaatgtttttaactaatattttaacagcat	Protospacer
 ******* ********* *******.*   ** 

119. spacer 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder matches to MN692965 (Marine virus AFVG_117M92, complete genome) position: , mismatch: 8, identity: 0.765

ttaaaaatttttttaacttatattttgagtccaa	CRISPR spacer
ttacagtagtttttaagttagattttgagtccat	Protospacer
*** *.   ******* *** ************ 

120. spacer 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder matches to MN693940 (Marine virus AFVG_250M588, complete genome) position: , mismatch: 8, identity: 0.765

ttaaaaatttttttaacttatattttgagtccaa	CRISPR spacer
tggaaggtgtttttaacttatatttagagtacag	Protospacer
* .**..* **************** **** **.

121. spacer 12.18|3074549|35|NZ_CP010888|CRT,PILER-CR matches to NC_015427 (Clostridium botulinum BKT015925 plasmid p4BKT015925, complete sequence) position: , mismatch: 8, identity: 0.771

ttaaaaatttttttaacttatattttgagtccaat---	CRISPR spacer
ttaaaaatttttttagcttattttt---gtttaaaacc	Protospacer
***************.***** ***   **..**    

122. spacer 12.18|3074549|35|NZ_CP010888|CRT,PILER-CR matches to KP027447 (Staphylococcus phage phiIPLA-C1C, complete genome) position: , mismatch: 8, identity: 0.771

ttaaaaatttttttaacttata-ttttgagtccaat	CRISPR spacer
ataaaaatttttttattttatatttttaaaaacaa-	Protospacer
 ************** .***** ****.*.  *** 

123. spacer 12.18|3074549|35|NZ_CP010888|CRT,PILER-CR matches to MH321491 (Staphylococcus phage Twillingate, complete genome) position: , mismatch: 8, identity: 0.771

ttaaaaatttttttaacttata-ttttgagtccaat	CRISPR spacer
ataaaaatttttttattttatatttttaaaaacaa-	Protospacer
 ************** .***** ****.*.  *** 

124. spacer 12.18|3074549|35|NZ_CP010888|CRT,PILER-CR matches to MK448694 (Streptococcus phage Javan179, complete genome) position: , mismatch: 8, identity: 0.771

ttaaaaatttttttaacttatattttgagtccaat	CRISPR spacer
ataaaaatgtttttaactaatattttaacagcatt	Protospacer
 ******* ********* *******.*   ** *

125. spacer 4.5|1661767|35|NZ_CP010888|CRISPRCasFinder matches to NZ_CP045274 (Bacillus megaterium strain FDU301 plasmid pFDU301B, complete sequence) position: , mismatch: 9, identity: 0.743

gctgtgatttcactaataaaacaattaataattgt	CRISPR spacer
aaaggtatttctctaataaaacaattaagaattca	Protospacer
.  *  ***** **************** ****  

126. spacer 8.1|2036310|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NC_011247 (Borrelia duttonii Ly plasmid pl165, complete sequence) position: , mismatch: 9, identity: 0.75

tttttaattatgtttatattaataaatccaaaatat-----	CRISPR spacer
gtttttattatatttatattaataaatt-----tatttcta	Protospacer
 **** *****.***************.     ***     

127. spacer 10.16|2354672|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047434 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6) position: , mismatch: 9, identity: 0.757

tcaatatctatattaagtttatttttaa---aaacatctt	CRISPR spacer
tttatatctttattaattttatttttaaattaaataa---	Protospacer
*. ****** ****** ***********   ***.*    

128. spacer 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder matches to MN692946 (Marine virus AFVG_117M27, complete genome) position: , mismatch: 9, identity: 0.735

ttaaaaatttttttaacttatattttgagtccaa	CRISPR spacer
tagaaaattgttttaacttatattttgaaaatgt	Protospacer
* .****** ******************.  .. 

129. spacer 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder matches to MN694368 (Marine virus AFVG_250M429, complete genome) position: , mismatch: 9, identity: 0.735

ttaaaaatttttttaacttatattttgagtccaa	CRISPR spacer
tagaaaattgttttaacttatattttgaaaatgt	Protospacer
* .****** ******************.  .. 

130. spacer 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder matches to NZ_CP015336 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpF27, complete sequence) position: , mismatch: 9, identity: 0.735

ttaaaaatttttttaacttatattttgagtccaa	CRISPR spacer
ctaaaaatttttttaacctatgttttaaagaaag	Protospacer
.****************.***.****.*.   *.

131. spacer 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder matches to NZ_CP015634 (Borrelia turicatae strain BTE5EL plasmid lp40) position: , mismatch: 9, identity: 0.735

ttaaaaatttttttaacttatattttgagtccaa	CRISPR spacer
ctaaaaatttttttaacctatgttttaaagaaag	Protospacer
.****************.***.****.*.   *.

132. spacer 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder matches to KP027447 (Staphylococcus phage phiIPLA-C1C, complete genome) position: , mismatch: 9, identity: 0.735

ttaaaaatttttttaacttatattttgagtccaa	CRISPR spacer
ataaaaatttttttattttatatttttaaaaaca	Protospacer
 ************** .********* *.    *

133. spacer 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder matches to MH321491 (Staphylococcus phage Twillingate, complete genome) position: , mismatch: 9, identity: 0.735

ttaaaaatttttttaacttatattttgagtccaa	CRISPR spacer
ataaaaatttttttattttatatttttaaaaaca	Protospacer
 ************** .********* *.    *

134. spacer 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder matches to NC_013793 (Bacillus pseudofirmus OF4 plasmid pBpOF4-02, complete sequence) position: , mismatch: 9, identity: 0.735

ttaaaaatttttttaacttatattttgagtccaa	CRISPR spacer
ttataaattttttttacttatattgaatgtacgc	Protospacer
*** ********** *********  . ** *. 

135. spacer 12.9|3074612|37|NZ_CP010888|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.757

aaacttct--catattcctgacaattgttattttacgaa	CRISPR spacer
--gtttccagcatattcctgataatagttattttactga	Protospacer
  ..***.  ***********.*** ********** .*

136. spacer 19.3|3822264|37|NZ_CP010888|CRISPRCasFinder,CRT matches to KU599886 (Flavobacterium phage Fpv20, complete genome) position: , mismatch: 9, identity: 0.757

aatgatactgtaatatctaaagatgtt-acattggcaa	CRISPR spacer
cctgatgctgtaatatctaaaaatgttaaaaatagta-	Protospacer
  ****.**************.***** * * *.*.* 

137. spacer 19.3|3822264|37|NZ_CP010888|CRISPRCasFinder,CRT matches to NC_031931 (Flavobacterium phage Fpv2, complete genome) position: , mismatch: 9, identity: 0.757

aatgatactgtaatatctaaagatgtt-acattggcaa	CRISPR spacer
cctgatgctgtaatatctaaaaatgttaaaaatagta-	Protospacer
  ****.**************.***** * * *.*.* 

138. spacer 19.3|3822264|37|NZ_CP010888|CRISPRCasFinder,CRT matches to KT876726 (Flavobacterium phage FpV21, complete genome) position: , mismatch: 9, identity: 0.757

aatgatactgtaatatctaaagatgtt-acattggcaa	CRISPR spacer
cctgatgctgtaatatctaaaaatgttaaaaatagta-	Protospacer
  ****.**************.***** * * *.*.* 

139. spacer 19.3|3822264|37|NZ_CP010888|CRISPRCasFinder,CRT matches to KU599877 (Flavobacterium phage Fpv1, complete genome) position: , mismatch: 9, identity: 0.757

aatgatactgtaatatctaaagatgtt-acattggcaa	CRISPR spacer
cctgatgctgtaatatctaaaaatgttaaaaatagta-	Protospacer
  ****.**************.***** * * *.*.* 

140. spacer 19.3|3822264|37|NZ_CP010888|CRISPRCasFinder,CRT matches to MK764449 (Flavobacterium phage FPSV-S29, complete genome) position: , mismatch: 9, identity: 0.757

aatgatactgtaatatctaaagatgtt-acattggcaa	CRISPR spacer
cctgatgctgtaatatctaaaaatgttaaaaatagta-	Protospacer
  ****.**************.***** * * *.*.* 

141. spacer 19.3|3822264|37|NZ_CP010888|CRISPRCasFinder,CRT matches to MK764441 (Flavobacterium phage FPSV-F12, complete genome) position: , mismatch: 9, identity: 0.757

aatgatactgtaatatctaaagatgtt-acattggcaa	CRISPR spacer
cctgatgctgtaatatctaaaaatgttaaaaatagta-	Protospacer
  ****.**************.***** * * *.*.* 

142. spacer 19.17|3823181|34|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030933 (Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence) position: , mismatch: 9, identity: 0.735

atatttaaagcaagtacttttttaagaaaactta	CRISPR spacer
tttagtaaagcaggtatttttttaagaaactttc	Protospacer
 *   *******.***.************ .** 

143. spacer 4.5|1661767|35|NZ_CP010888|CRISPRCasFinder matches to NC_022783 (Bacillus toyonensis BCT-7112 plasmid pBCT8, complete sequence) position: , mismatch: 10, identity: 0.714

gctgtgatttcactaataaaacaattaataattgt	CRISPR spacer
attttattttcactaaaaaaacaagtaataatacc	Protospacer
..* *. ********* ******* *******  .

144. spacer 4.5|1661767|35|NZ_CP010888|CRISPRCasFinder matches to NC_019526 (Enterobacteria phage vB_KleM-RaK2, complete genome) position: , mismatch: 10, identity: 0.714

gctgtgatttcactaataaaacaattaataattgt	CRISPR spacer
ttcttgatatcattaataaaacaattaatgacttc	Protospacer
 .. **** ***.****************.*.* .

145. spacer 4.5|1661767|35|NZ_CP010888|CRISPRCasFinder matches to MT708547 (Klebsiella phage Muenster, complete genome) position: , mismatch: 10, identity: 0.714

gctgtgatttcactaataaaacaattaataattgt	CRISPR spacer
ttcttgatatcattaataaaacaattaatgacttc	Protospacer
 .. **** ***.****************.*.* .

146. spacer 4.5|1661767|35|NZ_CP010888|CRISPRCasFinder matches to AB897757 (Klebsiella phage K64-1 DNA, complete genome) position: , mismatch: 10, identity: 0.714

gctgtgatttcactaataaaacaattaataattgt	CRISPR spacer
ttcttgatatcattaataaaacaattaatgacttc	Protospacer
 .. **** ***.****************.*.* .

147. spacer 4.10|1661766|36|NZ_CP010888|CRT matches to NZ_CP045274 (Bacillus megaterium strain FDU301 plasmid pFDU301B, complete sequence) position: , mismatch: 10, identity: 0.722

tgctgtgatttcactaataaaacaattaataattgt	CRISPR spacer
aaaaggtatttctctaataaaacaattaagaattca	Protospacer
 .  *  ***** **************** ****  

148. spacer 6.3|1665699|36|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to AP013642 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C42-MedDCM-OCT-S37-C124, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.722

ctatctcttcttttaccttctataaaatttaattgt	CRISPR spacer
tcttttcttcttataccttctaaaaaatttagctta	Protospacer
.. *.******* ********* ********..*  

149. spacer 10.16|2354672|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035115 (Lactobacillus plantarum strain SRCM103295 plasmid unnamed2) position: , mismatch: 10, identity: 0.73

tcaatatctatattaagtttatttttaaaaacatctt	CRISPR spacer
ttacaaaatagattaagtttattttaaaaaacattcc	Protospacer
*.*  *  ** ************** ********...

150. spacer 10.16|2354672|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035567 (Lactobacillus plantarum strain SRCM103300 plasmid unnamed1) position: , mismatch: 10, identity: 0.73

tcaatatctatattaagtttatttttaaaaacatctt	CRISPR spacer
ttacaaaatagattaagtttattttaaaaaacattcc	Protospacer
*.*  *  ** ************** ********...

151. spacer 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder matches to NC_047948 (Staphylococcus phage phiSA_BS2, complete genome) position: , mismatch: 10, identity: 0.706

ttaaaaatttttttaacttatattttgagtccaa	CRISPR spacer
ttaaaaatttatttaacttatcttttttacgttt	Protospacer
********** ********** ****  .. .  

152. spacer 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder matches to MH078572 (Staphylococcus phage phiSA_BS1, complete genome) position: , mismatch: 10, identity: 0.706

ttaaaaatttttttaacttatattttgagtccaa	CRISPR spacer
ttaaaaatttatttaacttatcttttttacgttt	Protospacer
********** ********** ****  .. .  

153. spacer 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder matches to NZ_KX711616 (Bacillus subtilis strain 72 plasmid pBS72, complete sequence) position: , mismatch: 10, identity: 0.706

ttaaaaatttttttaacttatattttgagtccaa	CRISPR spacer
cattaaattttttttacttatatttggaggctgt	Protospacer
.   ********** ********** *** *.. 

154. spacer 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder matches to NZ_CP021643 (Campylobacter concisus strain P2CDO4 plasmid pICON, complete sequence) position: , mismatch: 10, identity: 0.706

ttaaaaatttttttaacttatattttgagtccaa	CRISPR spacer
aaaaacatttttttaacttttattttaatttttt	Protospacer
  *** ************* ******.* *..  

155. spacer 12.8|3074549|34|NZ_CP010888|CRISPRCasFinder matches to NZ_CP024793 (Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence) position: , mismatch: 10, identity: 0.706

ttaaaaatttttttaacttatattttgagtccaa	CRISPR spacer
ggaaaaatttttcttacttatattttatattaca	Protospacer
  **********.* ***********. .*.  *

156. spacer 12.18|3074549|35|NZ_CP010888|CRT,PILER-CR matches to NC_047948 (Staphylococcus phage phiSA_BS2, complete genome) position: , mismatch: 10, identity: 0.714

ttaaaaatttttttaacttatattttgagtccaat	CRISPR spacer
ttaaaaatttatttaacttatcttttttacgtttt	Protospacer
********** ********** ****  .. .  *

157. spacer 12.18|3074549|35|NZ_CP010888|CRT,PILER-CR matches to MH078572 (Staphylococcus phage phiSA_BS1, complete genome) position: , mismatch: 10, identity: 0.714

ttaaaaatttttttaacttatattttgagtccaat	CRISPR spacer
ttaaaaatttatttaacttatcttttttacgtttt	Protospacer
********** ********** ****  .. .  *

158. spacer 12.18|3074549|35|NZ_CP010888|CRT,PILER-CR matches to NZ_CP015336 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpF27, complete sequence) position: , mismatch: 10, identity: 0.714

ttaaaaatttttttaacttatattttgagtccaat	CRISPR spacer
ctaaaaatttttttaacctatgttttaaagaaaga	Protospacer
.****************.***.****.*.   *. 

159. spacer 12.18|3074549|35|NZ_CP010888|CRT,PILER-CR matches to NZ_CP015634 (Borrelia turicatae strain BTE5EL plasmid lp40) position: , mismatch: 10, identity: 0.714

ttaaaaatttttttaacttatattttgagtccaat	CRISPR spacer
ctaaaaatttttttaacctatgttttaaagaaaga	Protospacer
.****************.***.****.*.   *. 

160. spacer 10.2|2353749|37|NZ_CP010888|PILER-CR,CRISPRCasFinder,CRT matches to NC_014634 (Ilyobacter polytropus DSM 2926 plasmid pILYOP02, complete sequence) position: , mismatch: 11, identity: 0.703

tccaaaattttaactttttctttttctaaatctttat	CRISPR spacer
ggatatttttttactttttctttttttaaatctgaaa	Protospacer
    *  **** *************.*******  * 

161. spacer 12.18|3074549|35|NZ_CP010888|CRT,PILER-CR matches to NZ_KX711616 (Bacillus subtilis strain 72 plasmid pBS72, complete sequence) position: , mismatch: 11, identity: 0.686

ttaaaaatttttttaacttatattttgagtccaat	CRISPR spacer
cattaaattttttttacttatatttggaggctgta	Protospacer
.   ********** ********** *** *..  

162. spacer 19.14|3822984|36|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR matches to NC_007581 (Clostridium phage c-st, complete genome) position: , mismatch: 11, identity: 0.694

ggaggaactaaatttagcttactttgataaagaaag	CRISPR spacer
attttcactaaattgagctgactttgataaagtatc	Protospacer
.     ******** **** ************ *  

163. spacer 19.14|3822984|36|NZ_CP010888|CRISPRCasFinder,CRT,PILER-CR matches to AP008983 (Clostridium phage c-st genomic DNA, complete genome) position: , mismatch: 11, identity: 0.694

ggaggaactaaatttagcttactttgataaagaaag	CRISPR spacer
attttcactaaattgagctgactttgataaagtatc	Protospacer
.     ******** **** ************ *  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 153588 : 175605 23 Streptococcus_phage(78.57%) transposase NA
DBSCAN-SWA_2 782739 : 800858 16 Synechococcus_phage(20.0%) transposase NA
DBSCAN-SWA_3 1630076 : 1687301 90 Clostridium_phage(94.32%) capsid,holin,plate,integrase,terminase,tail,portal attL 1625532:1625549|attR 1631367:1631384
DBSCAN-SWA_4 1911116 : 1985351 70 Clostridium_phage(42.86%) transposase,protease,plate,integrase,tRNA,tail,portal attL 1910348:1910366|attR 1986828:1986846
DBSCAN-SWA_5 2067031 : 2076758 11 Pandoravirus(37.5%) NA NA
DBSCAN-SWA_6 2087986 : 2100212 13 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_7 2969169 : 2983655 15 Streptococcus_phage(90.0%) NA NA
DBSCAN-SWA_8 2992996 : 3000305 10 Streptococcus_phage(83.33%) integrase attL 2991868:2991882|attR 3006436:3006450
DBSCAN-SWA_9 3634179 : 3643132 8 Catovirus(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage