CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP014275	Martelella sp. AD-3, complete genome	3 crisprs	csa3,cas3,cas2,cas1,cas4,cas7,cas8c,cas5,WYL,DEDDh	13	13
NZ_CP014277	Martelella sp. AD-3 plasmid unnamed2, complete sequence	0 crisprs	csa3	0	0
NZ_CP014276	Martelella sp. AD-3 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014275_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014275_1

134265-134354

Orphan

Consensus_repeat	Method
GAGCGCGTCCAGGAAAAGTGGATGCCGGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014275_1

>merge|NZ_CP014275|1|134265-134354|CRISPRCasFinder
GAGCGCGTCCAGGAAAAGTGGATGCCGGTTTTCCGTCCGGACGCGCGTAAAACAAACCAGAGCGCGTCCAGGAAAAGTGGATGCCGGTTT

>NZ_CP014275|1|1|134265-134354|CRISPRCasFinder
GAGCGCGTCCAGGAAAAGTGGATGCCGGTTT	TCCGTCCGGACGCGCGTAAAACAAACCA
GAGCGCGTCCAGGAAAAGTGGATGCCGGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014275.1\|WP_024708848.1\|123950_125282_-\|sugar-porter-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340917
NZ_CP014275.1\|WP_024708012.1\|134397_134940_-\|membrane-protein	unknown	unknown	gnl\|CDD\|224618
NZ_CP014275.1\|WP_024708842.1\|130099_130693_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014275.1\|WP_024708850.1\|121070_122213_-\|2-methylcitrate-synthase	unknown	unknown	gnl\|CDD\|183463
NZ_CP014275.1\|WP_024708009.1\|137922_138117_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014275.1\|WP_024708008.1\|138127_138994_-\|S49-family-peptidase	unknown	unknown	gnl\|CDD\|223689
NZ_CP014275.1\|WP_061449603.1\|143070_143994_+\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	unknown	unknown	gnl\|CDD\|237765
NZ_CP014275.1\|WP_024708007.1\|139063_139864_-\|methyltransferase	unknown	unknown	gnl\|CDD\|226608
NZ_CP014275.1\|WP_024708849.1\|122282_123794_-\|MmgE/PrpD-family-protein	unknown	unknown	gnl\|CDD\|224990
NZ_CP014275.1\|WP_024708013.1\|132980_134246_-\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|223206
NZ_CP014275.1\|WP_024708006.1\|139860_140091_-\|DUF2007-domain-containing-protein	unknown	unknown	gnl\|CDD\|378182
NZ_CP014275.1\|WP_024708845.1\|126477_127419_+\|PhnD/SsuA/transferrin-family-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270369
NZ_CP014275.1\|WP_024708846.1\|125726_126446_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NZ_CP014275.1\|WP_024708010.1\|136084_137578_-\|sodium/proline-symporter-PutP	unknown	unknown	gnl\|CDD\|273981
NZ_CP014275.1\|WP_036237601.1\|130698_132609_-\|DUF2207-domain-containing-protein	unknown	unknown	gnl\|CDD\|378333
NZ_CP014275.1\|WP_024708011.1\|135015_135960_-\|glycine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|236473
NZ_CP014275.1\|WP_024708004.1\|141265_143074_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP014275.1\|WP_152534519.1\|140274_141210_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NZ_CP014275.1\|WP_024708843.1\|127831_129946_-\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NZ_CP014275.1\|WP_024708844.1\|127598_127805_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP014275.1\|WP_024708848.1\|123950_125282_-\|sugar-porter-family-MFS-transporter	gnl\|CDD\|340917	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily. This subfamily includes bacterial transporters such as D-xylose-proton symporter (XylE or XylT), arabinose-proton symporter (AraE), galactose-proton symporter (GalP), major myo-inositol transporter IolT, glucose transport protein, putative metabolite transport proteins YfiG, YncC, and YwtG, and similar proteins. The symporters XylE, AraE, and GalP facilitate the uptake of D-xylose, arabinose, and galactose, respectively, across the boundary membrane with the concomitant transport of protons into the cell. IolT is involved in polyol metabolism and myo-inositol degradation into acetyl-CoA. The XylE-like subfamily belongs to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.14306e-110
NZ_CP014275.1\|WP_024708012.1\|134397_134940_-\|membrane-protein	gnl\|CDD\|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	8.02089e-84
NZ_CP014275.1\|WP_024708008.1\|138127_138994_-\|S49-family-peptidase	gnl\|CDD\|223689	COG0616, SppA, Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	4.14098e-76
NZ_CP014275.1\|WP_024708850.1\|121070_122213_-\|2-methylcitrate-synthase	gnl\|CDD\|183463	PRK12351, PRK12351, methylcitrate synthase; Provisional.	0
NZ_CP014275.1\|WP_061449603.1\|143070_143994_+\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	gnl\|CDD\|237765	PRK14608, PRK14608, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.	1.52213e-128
NZ_CP014275.1\|WP_024708007.1\|139063_139864_-\|methyltransferase	gnl\|CDD\|226608	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only].	1.00594e-78
NZ_CP014275.1\|WP_024708011.1\|135015_135960_-\|glycine--tRNA-ligase-subunit-alpha	gnl\|CDD\|236473	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.	0
NZ_CP014275.1\|WP_024708013.1\|132980_134246_-\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|223206	COG0128, AroA, 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism].	3.79632e-135
NZ_CP014275.1\|WP_024708006.1\|139860_140091_-\|DUF2007-domain-containing-protein	gnl\|CDD\|378182	pfam09413, DUF2007, Putative prokaryotic signal transducing protein. This is a family of putative prokaryotic signal transducing proteins of Pii-type.	4.87521e-19
NZ_CP014275.1\|WP_024708845.1\|126477_127419_+\|PhnD/SsuA/transferrin-family-substrate-binding-protein	gnl\|CDD\|270369	cd13651, PBP2_ThiY, Substrate binding domain of ABC-type transporters for thiamin biosynthetic pathway intermediates; a member of the type 2 periplasmic binding fold superfamily. ThiY is the periplasmic N-formyl-4-amino-5-(aminomethyl)-2-methylpyrimidine (FAMP) binding component of the ABC transport system (ThiXYZ). FAMP is imported into cell by the transporter, where it is then incorporated into the thiamin biosynthetic pathway. The closest structural homologs of ThiY are periplasmic binding proteins involved in alkanesulfonate/nitrate and bicarbonate transport , as well as THI5 which is responsible for the synthesis of 4-amino-5-(hydroxymethyl)-2-methylpyrimidine phosphate (HMP-P) in the thiamin biosynthetic pathway of eukaryotes. After binding the ligand, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ThiY/THI5 proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.20741e-90
NZ_CP014275.1\|WP_024708846.1\|125726_126446_+\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	1.62861e-57
NZ_CP014275.1\|WP_024708010.1\|136084_137578_-\|sodium/proline-symporter-PutP	gnl\|CDD\|273981	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP014275.1\|WP_036237601.1\|130698_132609_-\|DUF2207-domain-containing-protein	gnl\|CDD\|378333	pfam09972, DUF2207, Predicted membrane protein (DUF2207). This domain, found in various hypothetical bacterial proteins, has no known function.	4.29475e-70
NZ_CP014275.1\|WP_024708849.1\|122282_123794_-\|MmgE/PrpD-family-protein	gnl\|CDD\|224990	COG2079, PrpD, Uncharacterized protein involved in propionate catabolism [General function prediction only].	6.06e-141
NZ_CP014275.1\|WP_024708004.1\|141265_143074_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	3.70088e-22
NZ_CP014275.1\|WP_152534519.1\|140274_141210_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	1.40371e-105
NZ_CP014275.1\|WP_024708843.1\|127831_129946_-\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0

>NZ_CP014275.1|WP_024708013.1|132980_134246_-|3-phosphoshikimate-1-carboxyvinyltransferase
MNNNRLTVIPPGHALSGKVSPPGSKSITNRALLLAGLARGTSRLTGALKSDDTRHMANALRAMGVRVDEPDDTSFIVTGTGRLEAPSGPLFLGNAGTATRFLTAAAAAVEGIVIVDGDEHMHKRPIAPLVIALQSLGIKAEAPTGCPPVTIEGQGHFGTGRVEIDAGLSSQYVSALLMAAPLAPQGTSEPVTIALTGTEIGARGYIGLTLDAMAAFGAKVEQVDEATWTVLPTGYRAADFHIEPDASAATYLWAAEKLTGGAIDIGTPAEKFTQPDAKAYGVIASFPHMPAEIDGSQMQDAVPTLAVLAAFNETPVRFTGIENLRVKECDRTRALSLGLNAIREGLAEEDGDDLIVHADPALAGQHLPAEIDTFADHRIAMCFALAGLKISGITILDPLCVGKTYPGYWDALASLGVEYET
>NZ_CP014275.1|WP_036237601.1|130698_132609_-|DUF2207-domain-containing-protein
MLLATLLLAVTPVHAAEVINSFTSDVTVEKSGVYDVTETIAVHAEGDQIRRGIFRDFPLRFESEDGRTGDVTFDLKSVTLDGKPVDHHTESITNGIRIYIGSADTVLPPGDHTYRLTYETDRQVRYFGDHDEIYWNATGNFWAFPIEKATATITLPDGVTPTRTTFYTGAYGSREQNARETTNGNVATFETTAPLGPKEGLSVVVAVPKGAIDAPTTSESASWFLSDYRNYFIGFGGLLLVFLYYLLSWRKVGRDPPAGVVVPRWDPPEDLSPALVSYVENQGFGSSRFDAIAATAIDLAVKGFLIIDEPKKGMTLKRTDKPFDPALPPGQKALLKAVDDSGGVFIVDKAHGKSVASMASAFTSAITREHRGEYFVRNIGYSVGGVALSLLAGFALLVFGFISNAVIPVLFFSVFISVFIALFASMLGKAFRRRGRSMSSAIGTLVAAAFMGFFLLQAVGGMAVTLLSDHIDAADWAVIVAFGGIVLINLVFFFIMGAPTTSGRRKMDEIAGLKQYLTLAEANRMNLAGAPEMSPQHFETLLPYAVALGVEKPWSKTFDAWLTAAIAAGTASYYSPYWYYGDFRHQNLSDQIGSFSSSMASAMSSSMPTQNTSSSGFSGGGGFSGGGGGGGGGGGW
>NZ_CP014275.1|WP_024708842.1|130099_130693_+|hypothetical-protein
MNKKIAFPLSALALMALAAAPAQAETILPQGHYKTACLPIGKNDRHGFIAEVTIEGAVLSATAQSYAHDNCDVPTVKAEYRGVIEEASRQENHIDFVQRTGPFLYTLLLPEVTTYYNANIGSAGCDLGDWETGVPRDVSGKTCAPYTFPEIGSRLKDRLWVKGDRISFGHLPLSWQNEADGGFPQTSSPISFVKIED
>NZ_CP014275.1|WP_024708843.1|127831_129946_-|glycine--tRNA-ligase-subunit-beta
MPDLLLELRSEEIPARMQRQAAGELKKRVTDALVDAGLTYEGAREYFTPRRLALDIHGLTARSADVREERKGPRVGSPEKAIAGFLRGAGLDDISEAKIQSDPKKGDFYVAVIEKPGRDAEEIIRDVMPGIIRNFPWPKSMRWGAASSEPGALRWVRPLQSIVCTFGTEIEETRVIDFEIDGVVASNVTYGHRFHAPEPFEVRRFADYAAGLEKACVILDADRRKDIIRDDAANLAFANGLDVVEDEGLLDEVAGLVEYPQVLLGEFEEAFLEIPDEIIRLTIKTNQKCFVVRKHGEASLTNKFILIANIAASDGGKEIRYGNGKVVRARLSDALHFWHMDQRDLPDLATLEKSAAQFGLDLKKPLDQRMAKLDALNVTFHARLGSQGARVDRIRALAKELAPIVGADAAEVDRAVVLAKADLRTEAVGEFPELQGAMGRKYALLQGESEDVAAAIEEHYKPLGPSDVVPRGKVSLTVALADKLDTLTGFWSIDEKPTGSGDPYALRRAALGVIRIILERGVRLPLLSVFDDRDLLSFFHDRFKVYLRDMGARHDLIDAVLSADADDLEVVARRVEALTKFLDSEDGQNLLAGEKRAGQLLAAEEKKKTRIADKVVPALFETDAEKALHDAILAASKKARDASKREDYLAAMEALAALRAPVDAFFEDVLVNAEDEAVRANRLALLAMIREATGTVADFSKIAG
>NZ_CP014275.1|WP_024708844.1|127598_127805_+|hypothetical-protein
MKLAGLVLVVIGLATLTFRFGLYHYGDVAGDIEGSLLTPLAQLALLVGALLLALHLVLRFVRHVISHD
>NZ_CP014275.1|WP_024708845.1|126477_127419_+|PhnD/SsuA/transferrin-family-substrate-binding-protein
MLKRLALAAALTLLPGLAAADDRLSVILEWYVNPDHAPMVIAEANGYFADEGLDVDLVPPADPSMVPRMVASGRADIGVHYQPNLYLDHAAGIDIKRFGTLVSTPLNTLTVMADGPVQSLADLKGRKIGFSVAGIEEAVVSAMLSSASLTRDDITLVNVNFALTQSLLTGQVDATIGAFRNFELTQMAIEGEEGKAFFPEENGVPVYDELIYVTRSELIDDDRLPRFLDAVERAAIFITNHPEEAWGLFAEAYPDLDDELNRTAFADTIARFSKSPAAFDAARYQRFGAFMAENGLIEEAPEVSDISVSLYGG
>NZ_CP014275.1|WP_024708846.1|125726_126446_+|ABC-transporter-permease
MVIAAFVLLWQAVVTAFELPRYILPAPSAVAARLWTGHAYLFSNALITLREIIAGFAAGAAFGASAAFLLAGFPRFGRLVWPALVVLQSFPVFVIAPMLVLWFGFGITSKVVMTMIIVFFPVASNFADGLTRTDSAVIKAAHLDGAGHWQLLVLIRLPLAMPQLFSGLRIAAPLAPLGAVVGEWVGAAGGLGFVMVQANARMQSDTVFAAMFILALEAVLFRKAVDLAAPFFTRWSPAQ
>NZ_CP014275.1|WP_024708848.1|123950_125282_-|sugar-porter-family-MFS-transporter
MLIAIVIVAALFGMLFGFDQGVISGALPFIKQDFTITPFMEGVITSAVPLGAVAGTLLAMVTTDRYGRKPMLILGAVIFLVGSLISAFAFNQYVLTLARLLIGVGIGASAMTAPMFLAEVAPARIRGTIVSAFQLMITIGIMISYMSDAAFGGTGDWRWMIGVGVFPSIIALVGILLSPETPRWLTLNSNADKARDIIARLQPESSDAEIDEIITEIKESAKDEEAAPAWSTFLKKGILPVTSFAMIVFVLQQLSGINAIIYYAPEIFKSAGFSGTTTQLLATVGIGVVNVALTIVAMYLVESMGRRKLLILGFFGTAASMALVTVATMMNIAATPYLAMIGIFAFIAFFAVSLGPLPWLYMAELFPLRLRPRGMALASIANWFFNFVVALLFPELLAGIGIVGTFAIFTGFCVIGIFYAIAVAPETKGVTLEEIEQRTVAAG
>NZ_CP014275.1|WP_024708849.1|122282_123794_-|MmgE/PrpD-family-protein
MLEHKVRTHKSSENLKREDQLAWKIASVATDPVALDDDVVEMIGNRIIDNAAVAAASIARRPAVSARAQATAHPFSPGATIFGLAADKRFSPEWAAWANGVAVRELDYHDTFLAADYSHPGDNIPPILAVAQHCGLSGEALARGIATGYEIQVDLVRGICLHEHKIDHIAHLGPSAAAGIGTALGLDTETIYQAVQQALHVTTTTRQSRKGEISSWKAYAPAFAGKMAVEAVDRVMRGEGAPSPAWEGEDGFIAYLLSGPGAEYTVPLPEKGEPKRAIMDTYTKEHSAEYQSQALIDLARRMGPAIGDLSKVKSILIETSHHTHYVIGTGANDPQKMDPSASRETLDHSIMYIFAVALEDGGWHHERSYAPERAKRPETVALWHKIATAENPEWTRRYHSHDPAEKAFGGHVIVTMEDGRIIEDQLAVADANPLGNRPFSRPDYVKKFRMLAHGVVAAGEQDRFLATVERLTSLAPEELFGLNFVVSPDKLGAPARTGIFDWK
>NZ_CP014275.1|WP_024708850.1|121070_122213_-|2-methylcitrate-synthase
MTEARKPKKSVALSGVVAGNTALCSVGQSGNDLHYRGYDILDIAGTCEFEEIAYLLVYGALPDAATLTAYKAKLSALRGLPSAVRGALELLPAATHPMDVMRTGASVLGCVLPEAADHNKAGARDIADRLMASLGSMLIYWYHFSHNGRRIDVETDDASIGGHFLHLLHGKAPSESHVRAMHTSLILYAEHEFNASTFTARSITGTGTDFYSAVCGAIGALRGPKHGGANEFAFEIQKRYDTAEEADADIRERVAQKQVIIGFGHPVYTVSDPRNKVIKQVARELSEEAGSMKMFDIAERIEATMADARNMFPNLDWFSAVSYHMMGVPTAMFTPLFVIARMAGWAAHIIEQREDGKIIRPAANYIGPDNRPFVPMNERA
>NZ_CP014275.1|WP_024708012.1|134397_134940_-|membrane-protein
MIVIIGAIAGFVISLYNALVRARQTAEEAWSGIDVQLKRRADLIPNLVETVKGYASHERGTLEEVVEKRNKAQSVATNDVTGRAEAEGELTQALGRLFALSEAYPDLKANQNFADLQASLEKTESEIQMARRYYNGAARELNVKVESFPSNIIAGQFGFEKRDYFEIDEPADRAVPNVSF
>NZ_CP014275.1|WP_024708011.1|135015_135960_-|glycine--tRNA-ligase-subunit-alpha
MSEIKPHMHPKRSFQGLILTLQAYWADKGCAILQPYDMEVGAGTLHPSTTLRALGPKRWNVAYVQPSRRPADGRYGENPNRLQHYYQYQVLLKPSPPDLQELYLGSLKAIGLDPLLHDIRFVEDDWENPTTGSWGLGWECWCDGMEVSQFTYFQQVCGIECAPVAGELTYGLERLAMYVQGVDNVYDLNFNGREGDEKVTYGDVFLQTEQEYSRHNFEYANTEMLHRHFLDAEAECRALLAAGAPGEAASLHKCVFPAYDQCIKASHLFNLLDARGVISVTERQSYILRVRTLAKACGEAYLLTEAGGFQPEAA
>NZ_CP014275.1|WP_024708010.1|136084_137578_-|sodium/proline-symporter-PutP
MSFGVTVSLTLYFVLMIAIGIYAWRKSTSNSEEYMLGGRQLSPAVAALSAGASDMSGWLLMGLPGALFVSGLTQSWIGVGLVIGAFFNWIIVAPRLREQTERYDNSLTIPEFLSKRFPSKAMALRSVSAIVIVVFFAVYTGSGLVAGGKLFDTAFPDLIHIGSLSAYQTGIILTMGIVLVYTLIGGFLAVSLTDFVQGCIMMLALVIMPLVVVYKAGGIGVSEARMLSVAPNFLSMFHGLTVVGFLSAVAWGLGYFGQPHIIVRFMAVRSVEDVPKARNIGMAWMIISLAGAVGLGIFGRSYVVGNNIDIADPETIFIVLANQLFVPLVTGFLLAALLAAIMSTISSQLLVASSSLTEDFYRLFLRRHASEREMVNIGRFFVLVVAIVAAIIGWDPDSKVLGLVSNAWAGFGAAFGPLIILSLTWRGMSGAGAVAGLVAGALTVIIWISLGWGSSFLGGPGVYEIIPGFIVAFIAIWVVSLMTPTKDEFRPLSPAAE
>NZ_CP014275.1|WP_024708009.1|137922_138117_-|hypothetical-protein
MGRLMVLAAIAGGGYMLYRKFINDAEAVTARGEQKRAEQKNGATGTLVKDPATGEYYVKKTDAP
>NZ_CP014275.1|WP_024708008.1|138127_138994_-|S49-family-peptidase
MKQLVSGLIPKRFRKDKTIIPVVRFSGAIMAGGSPGRRSLNLASVSAALDKAFSMKTSPCVAISLNSPGGSPVQSRLIFSRIRALSEEKNKKVLVFVEDVAASGGYMIALAGDEIFVDPTSIVGSIGVVSGGFGFTGLIEKIGVERRVYTAGENKVMLDPFQPEKEKDIAFLKDLQGEIHQVFIQMVKERRGDKLADDPDLFSGLFWSGIRGAELGLVDGIGEMRATLKARYGDKAEMKLVSTPTNLLGRAKPGVAGIGLSAPEIGAGLASGLAETAEERALWARYGL
>NZ_CP014275.1|WP_024708007.1|139063_139864_-|methyltransferase
MSAMPEKTIDAFHRGRFHLVQPKGRGHRAGMDAMLLASMVEGDGRLKVADLGAGAGAAGLAVAARLPEADVSLFEISAEMADYARETLALAENEALSGRVAVFEADVTLRGAARNAAGLTDDTFDHVIMNPPFNWTADRRTPDALKGVAHAMTDGLFEHWIRTAGAILKPGGTLSLIARPQSIADIIAACGKRFGGIEITPIHARKDEEAFRILVSAVKGSRARLSLRAPLVMHASDGHAFLPLVDDLNNGRTAYPRNSVRRRANL
>NZ_CP014275.1|WP_024708006.1|139860_140091_-|DUF2007-domain-containing-protein
MGLTNLMRTNDAVVLGLAESLLKDAGIHFFVADRSMSVMEGSLGLLPRRLMVEEGQLAEARAILTEAGLGKELKPE
>NZ_CP014275.1|WP_152534519.1|140274_141210_+|polyprenyl-synthetase-family-protein
MERVNRLILSKAGSDVEMIPEVANHLISSGGKRLRPMLTLATAAMFGYRGDHHVYLATSVEFMHTATLLHDDVVDESDMRRGKSSARMIWGNQASVLVGDFLLGQAFRMMVETGSMEALKVLSNAAAVIAEGEVLQLSVAKKMETTEDDYIAVIRGKTAELFAAAAEVGPIIAGASEAERNALRDYGMALGLAFQLVDDVLDYGGSSADLGKNVGDDFREGKVTMPVILAHQRGDAEEKAFWRAAIEDGENDDAALEKARRLIARHNALSDSISRALAYGETARAALAPLPMSAGRHALEEVIDYCIARIS
>NZ_CP014275.1|WP_024708004.1|141265_143074_+|tetratricopeptide-repeat-protein
MTKTIPMKRLLTTAALAAALMLPLPASAETHGDGDAALDAAMEAVSAESFAGALLAGQTAAFDNDLDRAVAYFRRALQYRPDDAGTNNQLFIALIFNGDLESAKAQAAKTTDEPQLVPLRELSLALAALSEERYDDAIAMLDDFGGSALDDLVSELLNAWALTGKGDPDAALAGLEALSGPPWYDLFVNYNAGAIAALSGDTAKARTYLNAALADREGGVTAPDTMLATVIGLAAIEQQAGNTRKALDTVSVAETYGLNAAVLEPIRERIEAGAPVMGLPETARAGAAGVLFEIAAALNQGTADDIVSLYLALAEALNPGSPDVLYLSGVVEAANDRPERALSYFSRIPEDATQYRLAELQQGIALAELDRKDEAIEMLYAMVEDAPDDRRGYLALAGVLSSESRFAEMAEVLDRAADRIGPVAAPEDWSIFYRRGIAYERLKQWDKAEPNFLRALELYPDQPQVLNYLGYSWIDQGINLEEGLDLINKAVEQRPDDGYIVDSLGWAYYRLGRYEDALRELERAVALDSGDPALNDHLGDVYWQVGRRLEAIYQWNKALAGEPDEDLVPEIKAKIAHGLPAETQDDDSPLAQSPEGDGGTVQ
>NZ_CP014275.1|WP_061449603.1|143070_143994_+|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase
MTDAPNGGAIFEFAAAKINLALHVTGRRGDGYHLLDSLVTFTDIGDRLTFSPSDTDRFTLSGRFADDLPHHDDIRTGNLVLKARNRLRERAVEAGGTAGPVHIHLEKNLPPASGIGGGSADAAAVLRGLNRLWQPGLDAETIALIALSLGADVPMCLASRPLVARGIGDIIVPATGFPRLDLVLANPLLPLATPAVFAALENRHNPPLSIEAQAPADASEWIALLRESRNDLQLPASRIAPAIHGVLDALSSAGASLVRMSGSGATCFGLFADVDIAKAAADRLAHARPDWFVAATTTLAEGDDDHD

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Crispr_ID: NZ_CP014275_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014275_2

2305737-2306237

TypeI

Consensus_repeat	Method
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CRISPRCasFinder
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CRT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	PILER-CR

7 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP014275_2

>merge|NZ_CP014275|2|2305737-2306237|CRISPRCasFinder,CRT,PILER-CR
CGAATTACACACGCCTCCGCGAGGGAGGCGACCGGCTATCCGCTTCGGAACTACTATGACTTCACTGTTTCGATCCACGCCTCCGCGAGGGAGGCGACTAGCAGCGCCGGCCGTTGCCGATGCCGCTGTAACCTGTTTCGATCCACGCCTCCGCGAGGGAGGCGACGCCCATACCGGAACCTTGGCGCGCGCTTCCTCGAGGTTTCGATCCACGCCTCCGCGAGGGAGGCGACCAACAAGACCATGACGAGGGTTGCCTATTTCGGGCCGTTTCGATCCACGCCTCCGCGAGGGAGGCGACGCCAGACGTGGCGCAACTACCGCCGCAACTTAAGGTTTCGATCCACGCCTCCGCGAGGGAGGCGACCGCGTAGGGCTATCTGTGCCCGCTGCTTGCGGGTGTTTCGATCCACGCCTCCGCGAGGGAGGCGACGCGCCGGAAAGACTGCCGACCGGCACACCGAAGAGGTTTCGATCCACGCCTCCGCGAGGGAGGCGACT

>NZ_CP014275|2|2|2305737-2306237|CRISPRCasFinder
CGAATTACACACGCCTCCGCGAGGGAGGCGAC	CGGCTATCCGCTTCGGAACTACTATGACTTCACT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	TAGCAGCGCCGGCCGTTGCCGATGCCGCTGTAACCT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GCCCATACCGGAACCTTGGCGCGCGCTTCCTCGAG
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CAACAAGACCATGACGAGGGTTGCCTATTTCGGGCC
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GCCAGACGTGGCGCAACTACCGCCGCAACTTAAG
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CGCGTAGGGCTATCTGTGCCCGCTGCTTGCGGGT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GCGCCGGAAAGACTGCCGACCGGCACACCGAAGAG
GTTTCGATCCACGCCTCCGCGAGGGAGGCGACT

>NZ_CP014275|2|1|2305737-2306236|CRT
CGAATTACACACGCCTCCGCGAGGGAGGCGAC	CGGCTATCCGCTTCGGAACTACTATGACTTCACT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	TAGCAGCGCCGGCCGTTGCCGATGCCGCTGTAACCT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GCCCATACCGGAACCTTGGCGCGCGCTTCCTCGAG
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CAACAAGACCATGACGAGGGTTGCCTATTTCGGGCC
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GCCAGACGTGGCGCAACTACCGCCGCAACTTAAG
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CGCGTAGGGCTATCTGTGCCCGCTGCTTGCGGGT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GCGCCGGAAAGACTGCCGACCGGCACACCGAAGAG
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC

>NZ_CP014275|2|1|2305803-2306236|PILER-CR
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	TAGCAGCGCCGGCCGTTGCCGATGCCGCTGTAACCT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GCCCATACCGGAACCTTGGCGCGCGCTTCCTCGAG
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CAACAAGACCATGACGAGGGTTGCCTATTTCGGGCC
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GCCAGACGTGGCGCAACTACCGCCGCAACTTAAG
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CGCGTAGGGCTATCTGTGCCCGCTGCTTGCGGGT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GCGCCGGAAAGACTGCCGACCGGCACACCGAAGAG
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014275.1\|WP_024710165.1\|2311678_2312338_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP014275.1\|WP_081725719.1\|2301519_2302656_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP014275.1\|WP_024710166.1\|2310644_2311679_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP014275.1\|WP_024707254.1\|2298371_2298929_-\|TRAP-transporter-small-permease	unknown	unknown	gnl\|CDD\|377284
NZ_CP014275.1\|WP_024710160.1\|2318436_2319078_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376769
NZ_CP014275.1\|WP_024707256.1\|2296410_2297004_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|365914
NZ_CP014275.1\|WP_024707252.1\|2300387_2301488_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368448
NZ_CP014275.1\|WP_024710167.1\|2310344_2310635_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP014275.1\|WP_024710164.1\|2312371_2313322_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP014275.1\|WP_024710162.1\|2315093_2315792_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_CP014275.1\|WP_024707257.1\|2295493_2296420_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236819
NZ_CP014275.1\|WP_024707259.1\|2293163_2294390_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP014275.1\|WP_024707250.1\|2302686_2303349_-\|SOS-response-associated-peptidase	unknown	unknown	gnl\|CDD\|225046
NZ_CP014275.1\|WP_036236489.1\|2298928_2299951_-\|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270320
NZ_CP014275.1\|WP_061449671.1\|2319074_2319824_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014275.1\|WP_024707249.1\|2303364_2305434_-\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|223288
NZ_CP014275.1\|WP_024710161.1\|2315831_2318096_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP014275.1\|WP_024707255.1\|2297046_2298351_-\|TRAP-transporter-large-permease-subunit	unknown	unknown	gnl\|CDD\|129868
NZ_CP014275.1\|WP_024710163.1\|2313318_2315097_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP014275.1\|WP_061449609.1\|2306356_2307553_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151

Protein	Function_ID	Function_description	E-value
NZ_CP014275.1\|WP_024710165.1\|2311678_2312338_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	3.69302e-38
NZ_CP014275.1\|WP_081725719.1\|2301519_2302656_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP014275.1\|WP_024710166.1\|2310644_2311679_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP014275.1\|WP_024707254.1\|2298371_2298929_-\|TRAP-transporter-small-permease	gnl\|CDD\|377284	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component. The function of the members of this family is unknown, but DctQ homologs are invariably found in the tripartite ATP-independent periplasmic transporters.	1.054e-09
NZ_CP014275.1\|WP_024710160.1\|2318436_2319078_-\|hypothetical-protein	gnl\|CDD\|376769	pfam02357, NusG, Transcription termination factor nusG.	2.72345e-19
NZ_CP014275.1\|WP_024707256.1\|2296410_2297004_-\|peptidylprolyl-isomerase	gnl\|CDD\|365914	pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD. The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilized in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function.	1.18913e-25
NZ_CP014275.1\|WP_024707252.1\|2300387_2301488_+\|hypothetical-protein	gnl\|CDD\|368448	pfam05448, AXE1, Acetyl xylan esterase (AXE1). This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyze the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan.	2.15792e-11
NZ_CP014275.1\|WP_024710167.1\|2310344_2310635_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.95522e-33
NZ_CP014275.1\|WP_024710164.1\|2312371_2313322_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.32711e-141
NZ_CP014275.1\|WP_024710162.1\|2315093_2315792_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.30335e-111
NZ_CP014275.1\|WP_024707257.1\|2295493_2296420_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|236819	PRK11013, PRK11013, DNA-binding transcriptional regulator LysR; Provisional.	1.54048e-49
NZ_CP014275.1\|WP_024707259.1\|2293163_2294390_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	8.17275e-74
NZ_CP014275.1\|WP_024707250.1\|2302686_2303349_-\|SOS-response-associated-peptidase	gnl\|CDD\|225046	COG2135, COG2135, Uncharacterized conserved protein [Function unknown].	6.69607e-41
NZ_CP014275.1\|WP_036236489.1\|2298928_2299951_-\|TRAP-transporter-substrate-binding-protein	gnl\|CDD\|270320	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold. DctP6 and DctP7 groups of the TRAP transporters that involved in pyroglutamic acid transport. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.81441e-94
NZ_CP014275.1\|WP_024707249.1\|2303364_2305434_-\|ATP-dependent-helicase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	6.9442e-159
NZ_CP014275.1\|WP_024710161.1\|2315831_2318096_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.60908e-56
NZ_CP014275.1\|WP_024707255.1\|2297046_2298351_-\|TRAP-transporter-large-permease-subunit	gnl\|CDD\|129868	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit. The Tripartite ATP-independent Periplasmic Transporter (TRAP-T) Family (TC 2.A.56)- DctM subunit TRAP-T family permeases generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. Only one member of the family has been both sequenced and functionally characterized. This system is the DctPQM system of Rhodobacter capsulatus (Forward et al., 1997). DctP is a periplasmic dicarboxylate (malate, fumarate, succinate) binding receptor that is biochemically well-characterized. DctQ is an integral cytoplasmic membrane protein with 4 putative transmembrane a-helical spanners (TMSs). DctM is a second integral cytoplasmic membrane protein with 12 putative TMSs. These proteins have been shown to be both necessary and sufficient for the proton motive force-dependent uptake of dicarboxylates into R. capsulatus. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.35289e-90
NZ_CP014275.1\|WP_024710163.1\|2313318_2315097_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NZ_CP014275.1\|WP_061449609.1\|2306356_2307553_+\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.19731e-140

>NZ_CP014275.1|WP_024707249.1|2303364_2305434_-|ATP-dependent-helicase
MSAAHLEKLNDNQRAAVLHGTDLPDGAIGGPLLIIAGAGSGKTNTLAHRVAQLVISGTDPRRILLMTFSRRAAAEMGKRVERICAKALGDRAGIMADGLAWSGTFHGIGARLLREYAIELGLDPQFTIHDREDSADLMNLARHDLGFSKTENRFPAKGTCLSIYSRTVNAEAPLSEILRANFPWCAAWEQELKELFAAYVEAKQIQNVLDYDDLLLYWAQTMSDPVLANEIGGRWDHVLVDEYQDTNRLQSSILMALKLGGWGLTVVGDDAQSIYSFRAATVRNILDFPNEFSPKADVITLDRNYRSTQPILAAANGVIGLAHERYTKDLWTDRASTEKPRLVTVRDEGDQARFIADEVLDNREGGMRLKDQAVLFRASHHSGPLEVELTRRNIPFVKFGGLKFLDSAHVKDMLAALRFAQNMRDRVAGFRLMQLLPGVGPVSAQNALDALAEIADPVETLAALPAPSRAVADWPGLVSLVTDLRQANMGWPAEIGRIRAWYEPYLERIHEDFEMRRADLLQLEDIAAGYPSRERFLTELTLDPPDATSGQAGVPLLDEDYLILSTIHSAKGQEWRSVFMLNAVDGCIPSDLGVGTTDDIEEERRLLYVAMTRARDSLNLVVPQRFFTHGQSSTGDGHVYASRTRFIPAMLLQHFENRTWPVAKPGQQDNAAPRQVRLDVGARMRGMWR
>NZ_CP014275.1|WP_024707250.1|2302686_2303349_-|SOS-response-associated-peptidase
MCNLYNLTTTRDAVVEFTKAMSDKAGWNEPSLNVYPNTLAPIVRVDGDGKREIVSATWGMPTPPAFVKGKADRGVTNIRNVGSPHWRRWLGPTSRCVVPFTSFAEPDPASKVEGGRVPNAWFAQNADRPLMFFASFWTPWKGVRKVRDGEQEYELFGFLTTTPNEIVKPIHEKAMPAILTTPEEVDLWLTGEWTDVKHLQRPLPGNMLVLVAPPENPEDE
>NZ_CP014275.1|WP_081725719.1|2301519_2302656_-|DNA-polymerase-IV
MAAPDELTTFERDHEVETDDAAPAIRKIIHVDMDAFYASVEQRDNPELRGKPVAVGGSAARGVVAAASYEARAFGVRSALPSVTAKRRCPDLVFVKPRFDVYRLVSAQIHQIFAEHTDLIEPLSLDEAYLDVTENKQGIAFATEIATIIRARIKDVTGLNASAGISYCKFLAKMASDLNKPNGQAVITPKMGPAFVADLAVKKFHGVGPATAEKMQRLGIVTGADLRDKSLAFLRDNFGKSGSWYYRISRGIDERPVQPDRPRKSIGAEDTFAADIFDLEAAQAELIPLAEKVWRHAENKQISGRTVTLKVKYADFQQITRSRTVRQNVRNADEIAEIAGTLLAELFPTQKGIRLLGVTLSSLGECSDRGGNTQMSLL
>NZ_CP014275.1|WP_024707252.1|2300387_2301488_+|hypothetical-protein
MLKSPTPFTFSLAGRSTFAPSGLHSRMIEEAPRKLSFEHAGSDPDWAETLRAKLIELLGMPDERPAGSVVTAVGERVDCGTHDRQEFIFEAEPGAEVPCVLLLPKNAKGPLPVMICLQGHTTGMHISLGEVMHDCDVEHIGGDRDFAIQAVNHGYAAIAMEQRAFGIRGDDRADCCRRTLDLPINDDNRTCKHPAMTALLLGRTLIGERVFDVIRACDAVAEFEVLDPERIHVMGNSGGGTIAWYAAALEPRLKGIIAASCFGTVARSIGAIDHCTDNYIPGMLEWFDFPDIAAAIHDAKVLIVMGRNDPLFPYEGVQEAFARAEVIFEHLGKAGAIDLVIGEGGHRFYADLAWPAFAALPASRSP
>NZ_CP014275.1|WP_036236489.1|2298928_2299951_-|TRAP-transporter-substrate-binding-protein
MKQDRRTFLKTTLMTTGAVMGGGLHKFAFAADTIRWDMADEYTEANLSGKAAINFAKLVSERLGDRLAVQYHGGGTLGYKSAEQFDAVEDRAVQSAVTVLTQLGGVDPLFELSSLPFVAQTPDEALLLWQIAKPEYAKVFADYDQVLLWAVPSPPSGIHAKMPITSPEALKGLRIRSYDANSTRTLAAAGAAPLQIAWSDLTPQLSTGGIDALLTSGESAEKLTLWDYVSDFTELNYAMALSVAHVHKDDYDALSDEDKAALEQICAECDKYNWDLMRASIDHAYEVMDDNGMTVTHADAVPQDMFDFLQQAADPVVQNWVEATGDRGHAILDAFRSAKS
>NZ_CP014275.1|WP_024707254.1|2298371_2298929_-|TRAP-transporter-small-permease
MSAVETFKPAGPKGPAWLRFIAAVSQRANLTAAYVAVTLVVLMTGLILLEIGLRAFSLSTHVTDSWVAYAVAAVTFLSMPWVLEQGSMLRVSVLVTRLPVLARKVAEFFGVVLSLAAVLFVLSYQWETVGKLIRRGTLSGDYVPVPLWLPALVFLIGLILLALQLLVRLLRLVVLSESSETSLSL
>NZ_CP014275.1|WP_024707255.1|2297046_2298351_-|TRAP-transporter-large-permease-subunit
MTTLDATVLLLGLLVVTLGAGIWIFSALLIVSIASLYLGLGFSPDRIGAIASKVIANKAVSWELAAVPIFLWMGEIILRTDLSQRLFRGLSPLVARIPGGLIHTNVLGCTVFAAISGSGTATTATVGKITIPELTRRGYNTSLSVGSLAGAGSFGLLIPPSIAMIVYGVLAEVSITRLFAAGVLPGLMMAGLFSGYIAIRSAISRHKPEDATERMTMRILFTSVRDLMPITLVMVVVLGSIYSGLATPSEAAAVGLAIAMVIAGIGRQLSHRMLLETLLNAVRVSTMLCVLIATSSLLSACLAYMNLPEEIKTWFSQAAFSPYMLLFVLALLYIVMGMFLDGTSITVMTVPIVLPVVVAAGFDPIWFGVFLIIMIELSALTPPIGLNLFILQGLTGRAINRVTLDALPFFLLMCFGTLILTLFPIIALWLPSLL
>NZ_CP014275.1|WP_024707256.1|2296410_2297004_-|peptidylprolyl-isomerase
MAKVSTPIVEFICDFGAIEIELYPEQAPHTARNFLAYCDKGLLDGASVFRIVTPKNDRPERSCDSRAVQWGWRPEKARYDPALGRGWDPMDAPENLPFPPVPLETTEITGLRHKRGTVSMGRDSAGLSGPHFFFCVEDAPYFDFGGKRNPDGRGFAAFAQIVSGFEVLDRLYGLAEPITWMMHPYPIRSVRRKVFHG
>NZ_CP014275.1|WP_024707257.1|2295493_2296420_+|LysR-family-transcriptional-regulator
MEIKMRQLEAFRAVVKLTSVSGAARALGLSQPTVSNLITSLETELGVQLFQRVKKRLVPTTEGLSFFGEVDRTFSSIERLTNAAGRLTTPSSAWLQVVLPQSFVVSIIPEALRILHQSNPGIGVTLEYLPSKEAVELVASGEWNFGIARMPISNRAVEARTIMQSAYVCVLPEGHPLCNRDRITPRDLAGEPLVLQSRRHEARFTIEEAFRKAGVRPTSVVETGALTGSCALTSAGIGISILDAILLEGYPDKSLTVRPFDPAITNQFALLREKTADLSPEATAFFEAIMTATRAMADASRNWLTIYP
>NZ_CP014275.1|WP_024707259.1|2293163_2294390_+|MFS-transporter
MSSSSASDSSSPIIDSKTTDANWAAVFALAFGLFGLITTELLPIGLIPAMASDLGVSDGAAGQAITATALIAAIAGPLLVLGSGRLDRRKIVWMLGLFFLASALLSTLATNLPLLLAARALLGVSLGGAWAMVIALAMRLVPPSKVPRAIAVIFTGVSIANVIAAPLGAWLSDLLSWRTTFAISVSLALVALISQLATMPRLSTMAPPSLASFRSVLAKPAVLIGLATTFLVICGNTAAIAFLRTFLESGLQINAQTVPLVLLTFGLAGFFGNLVGGALSSRSPALAAGGGALAIACATTALASQGQAPAAIFAAMAIWGLGFGAFPVAISSWNAQAAPDQAESAGAILSMGFQVAIAGGGVLGGILIERLGMSAPLQSAGIVAIIGAAVMLLIGRPDERRRTASQAS
>NZ_CP014275.1|WP_061449609.1|2306356_2307553_+|IS256-family-transposase
MTNDMMNLRSLVEKSADADLLREMIGFAAEKLMALEVGAKTGAGYGEKNGFRLAQRNGYRDRDWETRAGTVELRIPKLRTGSYFPSFLEPRRMAEKALTAVIQEAYIQGVSTRSVDDLVKAMGMSGISKSQVSRLCEEIDDKVKAFLDRPIEGEWPYLWIDATYLKVRRGGRIVSVAVIIAVGVNTDGRREVLGMEIGTSEAEPVWTEFLRNLTRRGLRGVKLVVSDAHEGIKAAVSKVLCATWQRCRVHFMRNALAHAGKSGRRVVSAFIATAFAQDTPEAASTQWRNVADQIRPKVPKLATLMDNAEQDVLAYMTFPRQHWAKLHSTNPIERLNGEIKRRTEVVGIFPNDDAIVRLVGALLLEQNDEWAVQRSRYMTLETIATMSDDPLISLPAAS
>NZ_CP014275.1|WP_024710167.1|2310344_2310635_-|CRISPR-associated-endonuclease-Cas2
MLVLVTYDVRVSEGNGAARLRAVAKACRDFGQRVQYSVFEIEVDPAQWTRLKARLEGIIKPEMDSLRYYYLGANWQRRVEHVGAKPAVDLNGPLMI
>NZ_CP014275.1|WP_024710166.1|2310644_2311679_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTFYAMTEGVALSKDGENLVAAIEGAERGRVPLHMLSGVVVFGAVYCSPPLMGALADAGITLTFLTRSGKFQARLEGPVSGNVLLRRAQYRASDQPVEIVRSIVTGKVANQRAVLMRSLRDYGSEYPSETRAALEDAGARLARIARRSELSEDTVDGLRGLEGEAANLYFSVFDHLIRAPDPEICWRGRSRRPPLDPVNALLSFLYTLLVHDCRSALEAVGLDPAVGFLHRDRPGRPSLALDLMEELRPVLADRLALSLFNRRQLRVSDFEVRDGGAVVMSDEARKTVIATWQERKKVEREHPFLGEKAPVGLVPYLQAQLLARHLRGDLDAYPPWFWK
>NZ_CP014275.1|WP_024710165.1|2311678_2312338_-|CRISPR-associated-protein-Cas4
MGAGEPIPISALQHAVYCLRQAALIHLERVWADNRFTAEGDVLHAVADKGGKRKARGLRRVMALPVACRRLNISGIADMVEFQLSPDGRETAFPVEYKRGKAKLHRADEVQLCAQALCLEEMTGMPVAEGALFYGETKRRIAVPFDADLRALTEETIAAFAGMLASGETPPPTDRRSRCRACSLIEICRPEAFGRPVCAWRRRQVEALVAESGAEGGDG
>NZ_CP014275.1|WP_024710164.1|2312371_2313322_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTIIKNRYDFSVIFEVKNGNPNGDPDAGNLPRLDPETNKGLVTDVSLKRKIRNYVDLARQGEDGFHIYVEEGSILNEKHREAYKSIYTDDPKVDKAAKLNPKDDAEAKVLTGFMCANFFDVRTFGAVMSTGINCGQVKGPVQMSFAASVEPIMPLEISITRMAATNAAELKQKAEGDDSADRTDNRTMGRKYIVPYGLYVSHGFISAKFAERTGFSESDLELLFEAIANMFEHDRSAARGEMATRKLIVFRHESALGNAPAHALFERVRIGRNIGGEFKPVDERLDNYPPARAFADYIVEIDRDNLPDGVEIIEKL
>NZ_CP014275.1|WP_024710163.1|2313318_2315097_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MTILASLVNAYDRLSDAPPIGYSSEKIGFVVSLNEDGSVASVSDLREGEGKRMRARQMLVPQPVKRTAGVAPNFLWDKTSYVLGVTAGEGKRTADEHAAFVERHLTDIGGTDDAGLRALLSFLQSWTPERFGEPVWPEDMKDQNVIFALESDRLAHIYIHDRPAAKALWARLSTAGDGGEQICLVTGDKMPPTRLHPSIKGVWGAQSSGAALVSFNLDAFTSYGHEQGANAPVSENAAFKYTTVLNRFLERDSGHRVQVGDASTVFWADSANMKRAEEAESLFSMFLEPPGEETGGTADDDKAETRKIEVTLKRIREGQSLASIKPDLVEGVRFYVLGLSPNAARLSVRFFFSDTFGALTGNYQRYLADVRVEPPPKDGFAPLWRYLQETAVLGKRENVQPNLAGEWMRAILSGTHYPLSLMAAVLTRIRADGNVNALRVGILKALLIRNFNMKEVPVALDPENGDRGYLLGRLFAVYEEMQRAALGGRVNATIRDKFYGSASAQPRKVFAVLENNSANHLAKVRKTSPGREYNLKKLQDEIMDRMNPNDDPYPSSLRAQEQALFGLGYHHQHSNFFKPKSDEATIQGGVEE
>NZ_CP014275.1|WP_024710162.1|2315093_2315792_-|type-I-C-CRISPR-associated-protein-Cas5
MAYGIRLKVWGDYACFTRPEMKVERVSYDVMTPSAARGILEAIHWKPAIRWVIDAIHVLEPIRFQSIRRNEVGHKAPAGKIKSAMKRGDLEGLNLLVDEDRQQRAATVLVRPAYVIEARFEMTEKAGPDDNEGKHLDTFNRRARRGQCFNQPCLGTREFSAAFELIEPDDRTPQAAAEHRTASLGFGAARDLGFVLYDIDHGAEGRPSLFFRALLEDGVVKVPPPNSPEVRR
>NZ_CP014275.1|WP_024710161.1|2315831_2318096_-|CRISPR-associated-helicase/endonuclease-Cas3
MSKAYFAHSTPGKVQSDWQALSDHLFAVASLASEMGGPLGIGRACFAAGLFHDLGKYNPIFQRRLAGENLRIDHSTAGAKLLREVAEGVDRQMAEIIAYAILGHHAGLPDRLNETNACYNWRIDNSPEIDPVWRDELGETPRDLAPMDILRKIPSGRNAGFALSVFGRMVFSCLVDADFRDTEAFYSRLEGRVADRQWPLLASFLPDLSARYERHMAGFSADGDLNRLRREVLSHVRGKAGEKPGLFTLTVPTGGGKTLASLGFALDHARIHGHRRIIYAIPFTSIIEQTAAIFRQVLEQEGDSLILEHHSAIDEDRESRRGREERQQHDKLKLAMEDWAAPIVVTTNVQLFESLFASRTSRARKLHNIAGSIIILDEAQTLPRHYLFPVMRMLEALVEQYGCTIILCTATQPALGARPDFQQGLALEGRELAPDPNGLAGRLARATIRHGGTMDNDALIAALEENEQALVIVNSRRHALELFRDAEAARLSGLVHLSTRLCAVHRREILGRVKARLKAGGPCRVIATSLVEAGVDIDFPCVLRAEAGLDQIVQAAGRCNREGGRRREESFVTVFDPADYAPPTEIKGMIGDMKRMIGKHDDLLSLPAIEDYFREVYWRKGEKGLDGKGILDRFTVTLSGTDFAYRSVAEEFRIIESGMEPVVIPYDDKARQAVADLGIENISSGRLARVLQSYIVQVPPKARALLVANGHARFERPDLRGDQFMLLQTASLYGPELGLLWEEAEYLAAENMIF
>NZ_CP014275.1|WP_024710160.1|2318436_2319078_-|hypothetical-protein
MTRDMTSLEAELGTDSLRRLERDAALRRMRLDEQHALTEAHDQATWYVAAVHPGHEQQVETVLKDIGAEALVPMRKGKQRRRRGRMLPVRDEVLMTGYVLVRFVSTARALRGLLSLDHVIAILGGWETPYPVSDDKVAQIMRKADNGDFDYERHSDVMVEAGDRVMIGDGIFEGQVGTVVTANSKGKGDVVVEVDLFGRLTPMVVPLAVVGKV
>NZ_CP014275.1|WP_061449671.1|2319074_2319824_-|hypothetical-protein
MSAESDAPGRKTVRKAFLKFYRQWPTFGDDSDERAFAEWQALHHAEREAAASLLPAFLSFAAMKGQTVKFAASTYLKERRWQEVPEGMEATTGPSIAATFGKAWMAERFIRLADPCAHLPPLTRFQESQIADGRADRKALWRERMQKMGWPAVNAMHEQAVRYPGRGVRVSPQTVLLSADFEQVRVDGNLWRAWEAEHHAHGYPWLPDTGRVEWVYFPPIPDEDGPKAALAAFFDRLERIGRTSGAAAQ

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Crispr_ID: NZ_CP014275_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014275_3

2307637-2310127

TypeI

Consensus_repeat	Method
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	PILER-CR
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CRISPRCasFinder
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CRT

37 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP014275_3

>merge|NZ_CP014275|3|2307637-2310127|PILER-CR,CRISPRCasFinder,CRT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGACTAGCGCTGATCAGTCCGTCCAGGTGCTCGTATTGTTTCGATCCACGCCTCCGCGAGGGAGGCGACAGGCGGATGACGCGACAGCCTCGCCCTTTGATCATGTTTCGATCCACGCCTCCGCGAGGGAGGCGACCTGAGTGAGTGGGACATCACCGACTACCTCAAGACTGTTTCGATCCACGCCTCCGCGAGGGAGGCGACGAGGCGGTGCGGTCAACGGGTTTCGATGAGTTGTGTTTCGATCCACGCCTCCGCGAGGGAGGCGACTTCCGGTGAGGGTGGCGGTGGCGGTGGATACGCAGGTTTCGATCCACGCCTCCGCGAGGGAGGCGACTTCTGCACGCGCTCGCCCTGGCGATAATCCGTCACCATGGTTTCGATCCACGCCTCCGCGAGGGAGGCGACCGTACATCGGGCCGCACTATTCGCCGTACTCCAAGTTTCGATCCACGCCTCCGCGAGGGAGGCGACCCAGCCCGGCCGAAGAGCTCGTTGTTGTCGTCGAGTTTCGATCCACGCCTCCGCGAGGGAGGCGACCCTCGCGCAGGCGAAAGTGCCAGATTTTGACGAGGTTTCGATCCACGCCTCCGCGAGGGAGGCGACGAGGCCCTTTTGCGTAGTGTGCTATAGGTTTGGTGTTTCGATCCACGCCTCCGCGAGGGTGGCGACCTCAGGCGCTTTGCCTGTCTTTGCCGACGCTGAAGTTTCGATCCACGCCTCCGCGAGGGAGGCGACCGACTCTTCCGCAGGCGCTCGCCGAAGGAGAAGAGTTTCGATCCACGCCTCCGCGAGGGAGGCGACGTCAACCTGATCGGCAAAGCGCTGCATCTCGGATTGTTTCGATCCACGCCTCCGCGAGGGAGGCGACAATTGTTATTTCGCTAATGCCGGATCGGACGGCGTTTCGATCCACGCCTCCGCGAGGGAGGCGACGTGGAAAAGCCGCCGCCATAGCGGTTGACGTTGGAGTTTCGATCCACGCCTCCGCGAGGGAGGCGACAGATTGCGACGACCATGAAACAGGCGCCGGACAAGTTTCGATCCACGCCTCCGCGAGGGAGGCGACGTGCAGGCGCGCTGTTCGGACTTGCGGTCGGCAAGGTTTCGATCCACGCCTCCGCGAGGGAGGCGACCTGCCGTGGCATTCTCCGCAGCGACAACCACGCAGTTTCGATCCACGCCTCCGCGAGGGAGGCGACGCCACGGCCATGCGGATATCGGCGGTGATCTGCAGTTTCGATCCACGCCTCCGCGAGGGAGGCGACCGGGGCTGCCTCGGCCACGGTACCAACAAAATTGTTTCGATCCACGCCTCCGCGAGGGAGGCGACCGGGGCTGCCTCGGCCACGGTACCAACAAAATTGTTTCGATCCACGCCTCCGCGAGGGAGGCGACCGCTACAACCTCGCCGCCTGAACATGCATCCAGTCGTTTCGATCCACGCCTCCGCGAGGGAGGCGACAGCTTGATGATGTTGCCGCTGGCGTCATAAAGCGCAGTTTCGATCCACGCCTCCGCGAGGGAGGCGACAATCGGCAGTGGCTTGACAGTCTACTTTGCAGTCGTTTCGATCCACGCCTCCGCGAGGGAGGCGACGCGTCTCGGTGGCGTCCAGCCCCGACGCCTACGTGTTTCGATCCACGCCTCCGCGAGGGAGGCGACCAAACGTAAATGCTCCTGCCGTCAACCTTGATATGTTTCGATCCACGCCTCCGCGAGGGAGGCGACGGGCTTCGGCTAAATTTGTATCAACGTCAACTGGTTTCGATCCACGCCTCCGCGAGGGAGGCGACTGCCAGCTGCTGAATTTCATTCCGAGCTTTTCCTCGTTTCGATCCACGCCTCCGCGAGGGAGGCGACCTCCATCAATCAGCATATACCGATGCCGAGCATTGTTTCGATCCACGCCTCCGCGAGGGAGGCGACCGGAAACGACATGGAGGAGTGACACGATGTTTGGACGTTTCGATCCACGCCTCCGCGAGGGAGGCGACGTGCGTGAAGCAATGGCCGCCGCCATCCGTGCAATGTTTCGATCCACGCCTCCGCGAGGGAGGCGACCTGAACGAGGTTCTTCGTCACTGCCGCGTAAGGGTGTTTCGATCCACGCCTCCGCGAGGGAGGCGACGCCATGACGGGTAAGCAGTCAGCCATCGCAATTCGTTTCGATCCACGCCTCCGCGAGGGAGGCGACAGCTTGTCGAAGGGCCGAACGTTACCCAAATTGCGTTTCGATCCACGCCTCCGCGAGGGAGGCGACGGTCCCGCATCTCTATCGACAGTGCATTTTCCGAGTTTCGATCCACGCCTCCGCGAGGGAGGCGACCGCCTCGGCGCCCATGACGGAGTGCTGCGCGACGGTTTCGATCCACGCCTCCGCGAGGGAGGCGACATTAAAGTTGGAGATGCTGTCGCCAACATCATATGCGTTTCGATCCACGCCTCCGCGAGGGAGGCGAC

>NZ_CP014275|3|2|2307637-2310127|PILER-CR
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	TAGCGCTGATCAGTCCGTCCAGGTGCTCGTATT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	AGGCGGATGACGCGACAGCCTCGCCCTTTGATCAT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CTGAGTGAGTGGGACATCACCGACTACCTCAAGACT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GAGGCGGTGCGGTCAACGGGTTTCGATGAGTTGT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	TTCCGGTGAGGGTGGCGGTGGCGGTGGATACGCAG
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	TTCTGCACGCGCTCGCCCTGGCGATAATCCGTCACCATG
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CGTACATCGGGCCGCACTATTCGCCGTACTCCAA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CCAGCCCGGCCGAAGAGCTCGTTGTTGTCGTCGA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CCTCGCGCAGGCGAAAGTGCCAGATTTTGACGAG
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GAGGCCCTTTTGCGTAGTGTGCTATAGGTTTGGT
GTTTCGATCCACGCCTCCGCGAGGGTGGCGAC	CTCAGGCGCTTTGCCTGTCTTTGCCGACGCTGAA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CGACTCTTCCGCAGGCGCTCGCCGAAGGAGAAGA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GTCAACCTGATCGGCAAAGCGCTGCATCTCGGATT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	AATTGTTATTTCGCTAATGCCGGATCGGACGGC
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GTGGAAAAGCCGCCGCCATAGCGGTTGACGTTGGA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	AGATTGCGACGACCATGAAACAGGCGCCGGACAA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GTGCAGGCGCGCTGTTCGGACTTGCGGTCGGCAAG
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CTGCCGTGGCATTCTCCGCAGCGACAACCACGCA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GCCACGGCCATGCGGATATCGGCGGTGATCTGCA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CGGGGCTGCCTCGGCCACGGTACCAACAAAATT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CGGGGCTGCCTCGGCCACGGTACCAACAAAATT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CGCTACAACCTCGCCGCCTGAACATGCATCCAGTC
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	AGCTTGATGATGTTGCCGCTGGCGTCATAAAGCGCA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	AATCGGCAGTGGCTTGACAGTCTACTTTGCAGTC
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GCGTCTCGGTGGCGTCCAGCCCCGACGCCTACGT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CAAACGTAAATGCTCCTGCCGTCAACCTTGATAT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GGGCTTCGGCTAAATTTGTATCAACGTCAACTG
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	TGCCAGCTGCTGAATTTCATTCCGAGCTTTTCCTC
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CTCCATCAATCAGCATATACCGATGCCGAGCATT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CGGAAACGACATGGAGGAGTGACACGATGTTTGGAC
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GTGCGTGAAGCAATGGCCGCCGCCATCCGTGCAAT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CTGAACGAGGTTCTTCGTCACTGCCGCGTAAGGGT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GCCATGACGGGTAAGCAGTCAGCCATCGCAATTC
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	AGCTTGTCGAAGGGCCGAACGTTACCCAAATTGC
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GGTCCCGCATCTCTATCGACAGTGCATTTTCCGA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CGCCTCGGCGCCCATGACGGAGTGCTGCGCGACG
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	ATTAAAGTTGGAGATGCTGTCGCCAACATCATATGC
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC

>NZ_CP014275|3|3|2307637-2310127|CRISPRCasFinder
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	TAGCGCTGATCAGTCCGTCCAGGTGCTCGTATT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	AGGCGGATGACGCGACAGCCTCGCCCTTTGATCAT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CTGAGTGAGTGGGACATCACCGACTACCTCAAGACT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GAGGCGGTGCGGTCAACGGGTTTCGATGAGTTGT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	TTCCGGTGAGGGTGGCGGTGGCGGTGGATACGCAG
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	TTCTGCACGCGCTCGCCCTGGCGATAATCCGTCACCATG
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CGTACATCGGGCCGCACTATTCGCCGTACTCCAA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CCAGCCCGGCCGAAGAGCTCGTTGTTGTCGTCGA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CCTCGCGCAGGCGAAAGTGCCAGATTTTGACGAG
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GAGGCCCTTTTGCGTAGTGTGCTATAGGTTTGGT
GTTTCGATCCACGCCTCCGCGAGGGTGGCGAC	CTCAGGCGCTTTGCCTGTCTTTGCCGACGCTGAA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CGACTCTTCCGCAGGCGCTCGCCGAAGGAGAAGA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GTCAACCTGATCGGCAAAGCGCTGCATCTCGGATT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	AATTGTTATTTCGCTAATGCCGGATCGGACGGC
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GTGGAAAAGCCGCCGCCATAGCGGTTGACGTTGGA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	AGATTGCGACGACCATGAAACAGGCGCCGGACAA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GTGCAGGCGCGCTGTTCGGACTTGCGGTCGGCAAG
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CTGCCGTGGCATTCTCCGCAGCGACAACCACGCA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GCCACGGCCATGCGGATATCGGCGGTGATCTGCA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CGGGGCTGCCTCGGCCACGGTACCAACAAAATT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CGGGGCTGCCTCGGCCACGGTACCAACAAAATT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CGCTACAACCTCGCCGCCTGAACATGCATCCAGTC
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	AGCTTGATGATGTTGCCGCTGGCGTCATAAAGCGCA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	AATCGGCAGTGGCTTGACAGTCTACTTTGCAGTC
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GCGTCTCGGTGGCGTCCAGCCCCGACGCCTACGT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CAAACGTAAATGCTCCTGCCGTCAACCTTGATAT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GGGCTTCGGCTAAATTTGTATCAACGTCAACTG
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	TGCCAGCTGCTGAATTTCATTCCGAGCTTTTCCTC
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CTCCATCAATCAGCATATACCGATGCCGAGCATT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CGGAAACGACATGGAGGAGTGACACGATGTTTGGAC
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GTGCGTGAAGCAATGGCCGCCGCCATCCGTGCAAT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CTGAACGAGGTTCTTCGTCACTGCCGCGTAAGGGT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GCCATGACGGGTAAGCAGTCAGCCATCGCAATTC
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	AGCTTGTCGAAGGGCCGAACGTTACCCAAATTGC
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GGTCCCGCATCTCTATCGACAGTGCATTTTCCGA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CGCCTCGGCGCCCATGACGGAGTGCTGCGCGACG
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	ATTAAAGTTGGAGATGCTGTCGCCAACATCATATGC
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC

>NZ_CP014275|3|2|2307637-2310127|CRT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	TAGCGCTGATCAGTCCGTCCAGGTGCTCGTATT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	AGGCGGATGACGCGACAGCCTCGCCCTTTGATCAT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CTGAGTGAGTGGGACATCACCGACTACCTCAAGACT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GAGGCGGTGCGGTCAACGGGTTTCGATGAGTTGT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	TTCCGGTGAGGGTGGCGGTGGCGGTGGATACGCAG
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	TTCTGCACGCGCTCGCCCTGGCGATAATCCGTCACCATG
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CGTACATCGGGCCGCACTATTCGCCGTACTCCAA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CCAGCCCGGCCGAAGAGCTCGTTGTTGTCGTCGA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CCTCGCGCAGGCGAAAGTGCCAGATTTTGACGAG
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GAGGCCCTTTTGCGTAGTGTGCTATAGGTTTGGT
GTTTCGATCCACGCCTCCGCGAGGGTGGCGAC	CTCAGGCGCTTTGCCTGTCTTTGCCGACGCTGAA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CGACTCTTCCGCAGGCGCTCGCCGAAGGAGAAGA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GTCAACCTGATCGGCAAAGCGCTGCATCTCGGATT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	AATTGTTATTTCGCTAATGCCGGATCGGACGGC
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GTGGAAAAGCCGCCGCCATAGCGGTTGACGTTGGA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	AGATTGCGACGACCATGAAACAGGCGCCGGACAA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GTGCAGGCGCGCTGTTCGGACTTGCGGTCGGCAAG
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CTGCCGTGGCATTCTCCGCAGCGACAACCACGCA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GCCACGGCCATGCGGATATCGGCGGTGATCTGCA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CGGGGCTGCCTCGGCCACGGTACCAACAAAATT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CGGGGCTGCCTCGGCCACGGTACCAACAAAATT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CGCTACAACCTCGCCGCCTGAACATGCATCCAGTC
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	AGCTTGATGATGTTGCCGCTGGCGTCATAAAGCGCA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	AATCGGCAGTGGCTTGACAGTCTACTTTGCAGTC
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GCGTCTCGGTGGCGTCCAGCCCCGACGCCTACGT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CAAACGTAAATGCTCCTGCCGTCAACCTTGATAT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GGGCTTCGGCTAAATTTGTATCAACGTCAACTG
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	TGCCAGCTGCTGAATTTCATTCCGAGCTTTTCCTC
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CTCCATCAATCAGCATATACCGATGCCGAGCATT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CGGAAACGACATGGAGGAGTGACACGATGTTTGGAC
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GTGCGTGAAGCAATGGCCGCCGCCATCCGTGCAAT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CTGAACGAGGTTCTTCGTCACTGCCGCGTAAGGGT
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GCCATGACGGGTAAGCAGTCAGCCATCGCAATTC
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	AGCTTGTCGAAGGGCCGAACGTTACCCAAATTGC
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	GGTCCCGCATCTCTATCGACAGTGCATTTTCCGA
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	CGCCTCGGCGCCCATGACGGAGTGCTGCGCGACG
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC	ATTAAAGTTGGAGATGCTGTCGCCAACATCATATGC
GTTTCGATCCACGCCTCCGCGAGGGAGGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014275.1\|WP_024710165.1\|2311678_2312338_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP014275.1\|WP_081725719.1\|2301519_2302656_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP014275.1\|WP_024710166.1\|2310644_2311679_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP014275.1\|WP_024707254.1\|2298371_2298929_-\|TRAP-transporter-small-permease	unknown	unknown	gnl\|CDD\|377284
NZ_CP014275.1\|WP_024710160.1\|2318436_2319078_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376769
NZ_CP014275.1\|WP_024707256.1\|2296410_2297004_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|365914
NZ_CP014275.1\|WP_024707252.1\|2300387_2301488_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368448
NZ_CP014275.1\|WP_024710167.1\|2310344_2310635_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP014275.1\|WP_024710164.1\|2312371_2313322_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP014275.1\|WP_024710162.1\|2315093_2315792_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_CP014275.1\|WP_024708485.1\|2319813_2320257_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014275.1\|WP_024707257.1\|2295493_2296420_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236819
NZ_CP014275.1\|WP_024707250.1\|2302686_2303349_-\|SOS-response-associated-peptidase	unknown	unknown	gnl\|CDD\|225046
NZ_CP014275.1\|WP_036236489.1\|2298928_2299951_-\|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270320
NZ_CP014275.1\|WP_061449671.1\|2319074_2319824_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014275.1\|WP_024707249.1\|2303364_2305434_-\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|223288
NZ_CP014275.1\|WP_024710161.1\|2315831_2318096_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP014275.1\|WP_024707255.1\|2297046_2298351_-\|TRAP-transporter-large-permease-subunit	unknown	unknown	gnl\|CDD\|129868
NZ_CP014275.1\|WP_024710163.1\|2313318_2315097_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP014275.1\|WP_061449609.1\|2306356_2307553_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151

Protein	Function_ID	Function_description	E-value
NZ_CP014275.1\|WP_024710165.1\|2311678_2312338_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	3.69302e-38
NZ_CP014275.1\|WP_081725719.1\|2301519_2302656_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP014275.1\|WP_024710166.1\|2310644_2311679_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP014275.1\|WP_024707254.1\|2298371_2298929_-\|TRAP-transporter-small-permease	gnl\|CDD\|377284	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component. The function of the members of this family is unknown, but DctQ homologs are invariably found in the tripartite ATP-independent periplasmic transporters.	1.054e-09
NZ_CP014275.1\|WP_024710160.1\|2318436_2319078_-\|hypothetical-protein	gnl\|CDD\|376769	pfam02357, NusG, Transcription termination factor nusG.	2.72345e-19
NZ_CP014275.1\|WP_024707256.1\|2296410_2297004_-\|peptidylprolyl-isomerase	gnl\|CDD\|365914	pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD. The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilized in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function.	1.18913e-25
NZ_CP014275.1\|WP_024707252.1\|2300387_2301488_+\|hypothetical-protein	gnl\|CDD\|368448	pfam05448, AXE1, Acetyl xylan esterase (AXE1). This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyze the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan.	2.15792e-11
NZ_CP014275.1\|WP_024710167.1\|2310344_2310635_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.95522e-33
NZ_CP014275.1\|WP_024710164.1\|2312371_2313322_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.32711e-141
NZ_CP014275.1\|WP_024710162.1\|2315093_2315792_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.30335e-111
NZ_CP014275.1\|WP_024707257.1\|2295493_2296420_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|236819	PRK11013, PRK11013, DNA-binding transcriptional regulator LysR; Provisional.	1.54048e-49
NZ_CP014275.1\|WP_024707250.1\|2302686_2303349_-\|SOS-response-associated-peptidase	gnl\|CDD\|225046	COG2135, COG2135, Uncharacterized conserved protein [Function unknown].	6.69607e-41
NZ_CP014275.1\|WP_036236489.1\|2298928_2299951_-\|TRAP-transporter-substrate-binding-protein	gnl\|CDD\|270320	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold. DctP6 and DctP7 groups of the TRAP transporters that involved in pyroglutamic acid transport. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.81441e-94
NZ_CP014275.1\|WP_024707249.1\|2303364_2305434_-\|ATP-dependent-helicase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	6.9442e-159
NZ_CP014275.1\|WP_024710161.1\|2315831_2318096_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.60908e-56
NZ_CP014275.1\|WP_024707255.1\|2297046_2298351_-\|TRAP-transporter-large-permease-subunit	gnl\|CDD\|129868	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit. The Tripartite ATP-independent Periplasmic Transporter (TRAP-T) Family (TC 2.A.56)- DctM subunit TRAP-T family permeases generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. Only one member of the family has been both sequenced and functionally characterized. This system is the DctPQM system of Rhodobacter capsulatus (Forward et al., 1997). DctP is a periplasmic dicarboxylate (malate, fumarate, succinate) binding receptor that is biochemically well-characterized. DctQ is an integral cytoplasmic membrane protein with 4 putative transmembrane a-helical spanners (TMSs). DctM is a second integral cytoplasmic membrane protein with 12 putative TMSs. These proteins have been shown to be both necessary and sufficient for the proton motive force-dependent uptake of dicarboxylates into R. capsulatus. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.35289e-90
NZ_CP014275.1\|WP_024710163.1\|2313318_2315097_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NZ_CP014275.1\|WP_061449609.1\|2306356_2307553_+\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.19731e-140

>NZ_CP014275.1|WP_061449609.1|2306356_2307553_+|IS256-family-transposase
MTNDMMNLRSLVEKSADADLLREMIGFAAEKLMALEVGAKTGAGYGEKNGFRLAQRNGYRDRDWETRAGTVELRIPKLRTGSYFPSFLEPRRMAEKALTAVIQEAYIQGVSTRSVDDLVKAMGMSGISKSQVSRLCEEIDDKVKAFLDRPIEGEWPYLWIDATYLKVRRGGRIVSVAVIIAVGVNTDGRREVLGMEIGTSEAEPVWTEFLRNLTRRGLRGVKLVVSDAHEGIKAAVSKVLCATWQRCRVHFMRNALAHAGKSGRRVVSAFIATAFAQDTPEAASTQWRNVADQIRPKVPKLATLMDNAEQDVLAYMTFPRQHWAKLHSTNPIERLNGEIKRRTEVVGIFPNDDAIVRLVGALLLEQNDEWAVQRSRYMTLETIATMSDDPLISLPAAS
>NZ_CP014275.1|WP_024707249.1|2303364_2305434_-|ATP-dependent-helicase
MSAAHLEKLNDNQRAAVLHGTDLPDGAIGGPLLIIAGAGSGKTNTLAHRVAQLVISGTDPRRILLMTFSRRAAAEMGKRVERICAKALGDRAGIMADGLAWSGTFHGIGARLLREYAIELGLDPQFTIHDREDSADLMNLARHDLGFSKTENRFPAKGTCLSIYSRTVNAEAPLSEILRANFPWCAAWEQELKELFAAYVEAKQIQNVLDYDDLLLYWAQTMSDPVLANEIGGRWDHVLVDEYQDTNRLQSSILMALKLGGWGLTVVGDDAQSIYSFRAATVRNILDFPNEFSPKADVITLDRNYRSTQPILAAANGVIGLAHERYTKDLWTDRASTEKPRLVTVRDEGDQARFIADEVLDNREGGMRLKDQAVLFRASHHSGPLEVELTRRNIPFVKFGGLKFLDSAHVKDMLAALRFAQNMRDRVAGFRLMQLLPGVGPVSAQNALDALAEIADPVETLAALPAPSRAVADWPGLVSLVTDLRQANMGWPAEIGRIRAWYEPYLERIHEDFEMRRADLLQLEDIAAGYPSRERFLTELTLDPPDATSGQAGVPLLDEDYLILSTIHSAKGQEWRSVFMLNAVDGCIPSDLGVGTTDDIEEERRLLYVAMTRARDSLNLVVPQRFFTHGQSSTGDGHVYASRTRFIPAMLLQHFENRTWPVAKPGQQDNAAPRQVRLDVGARMRGMWR
>NZ_CP014275.1|WP_024707250.1|2302686_2303349_-|SOS-response-associated-peptidase
MCNLYNLTTTRDAVVEFTKAMSDKAGWNEPSLNVYPNTLAPIVRVDGDGKREIVSATWGMPTPPAFVKGKADRGVTNIRNVGSPHWRRWLGPTSRCVVPFTSFAEPDPASKVEGGRVPNAWFAQNADRPLMFFASFWTPWKGVRKVRDGEQEYELFGFLTTTPNEIVKPIHEKAMPAILTTPEEVDLWLTGEWTDVKHLQRPLPGNMLVLVAPPENPEDE
>NZ_CP014275.1|WP_081725719.1|2301519_2302656_-|DNA-polymerase-IV
MAAPDELTTFERDHEVETDDAAPAIRKIIHVDMDAFYASVEQRDNPELRGKPVAVGGSAARGVVAAASYEARAFGVRSALPSVTAKRRCPDLVFVKPRFDVYRLVSAQIHQIFAEHTDLIEPLSLDEAYLDVTENKQGIAFATEIATIIRARIKDVTGLNASAGISYCKFLAKMASDLNKPNGQAVITPKMGPAFVADLAVKKFHGVGPATAEKMQRLGIVTGADLRDKSLAFLRDNFGKSGSWYYRISRGIDERPVQPDRPRKSIGAEDTFAADIFDLEAAQAELIPLAEKVWRHAENKQISGRTVTLKVKYADFQQITRSRTVRQNVRNADEIAEIAGTLLAELFPTQKGIRLLGVTLSSLGECSDRGGNTQMSLL
>NZ_CP014275.1|WP_024707252.1|2300387_2301488_+|hypothetical-protein
MLKSPTPFTFSLAGRSTFAPSGLHSRMIEEAPRKLSFEHAGSDPDWAETLRAKLIELLGMPDERPAGSVVTAVGERVDCGTHDRQEFIFEAEPGAEVPCVLLLPKNAKGPLPVMICLQGHTTGMHISLGEVMHDCDVEHIGGDRDFAIQAVNHGYAAIAMEQRAFGIRGDDRADCCRRTLDLPINDDNRTCKHPAMTALLLGRTLIGERVFDVIRACDAVAEFEVLDPERIHVMGNSGGGTIAWYAAALEPRLKGIIAASCFGTVARSIGAIDHCTDNYIPGMLEWFDFPDIAAAIHDAKVLIVMGRNDPLFPYEGVQEAFARAEVIFEHLGKAGAIDLVIGEGGHRFYADLAWPAFAALPASRSP
>NZ_CP014275.1|WP_036236489.1|2298928_2299951_-|TRAP-transporter-substrate-binding-protein
MKQDRRTFLKTTLMTTGAVMGGGLHKFAFAADTIRWDMADEYTEANLSGKAAINFAKLVSERLGDRLAVQYHGGGTLGYKSAEQFDAVEDRAVQSAVTVLTQLGGVDPLFELSSLPFVAQTPDEALLLWQIAKPEYAKVFADYDQVLLWAVPSPPSGIHAKMPITSPEALKGLRIRSYDANSTRTLAAAGAAPLQIAWSDLTPQLSTGGIDALLTSGESAEKLTLWDYVSDFTELNYAMALSVAHVHKDDYDALSDEDKAALEQICAECDKYNWDLMRASIDHAYEVMDDNGMTVTHADAVPQDMFDFLQQAADPVVQNWVEATGDRGHAILDAFRSAKS
>NZ_CP014275.1|WP_024707254.1|2298371_2298929_-|TRAP-transporter-small-permease
MSAVETFKPAGPKGPAWLRFIAAVSQRANLTAAYVAVTLVVLMTGLILLEIGLRAFSLSTHVTDSWVAYAVAAVTFLSMPWVLEQGSMLRVSVLVTRLPVLARKVAEFFGVVLSLAAVLFVLSYQWETVGKLIRRGTLSGDYVPVPLWLPALVFLIGLILLALQLLVRLLRLVVLSESSETSLSL
>NZ_CP014275.1|WP_024707255.1|2297046_2298351_-|TRAP-transporter-large-permease-subunit
MTTLDATVLLLGLLVVTLGAGIWIFSALLIVSIASLYLGLGFSPDRIGAIASKVIANKAVSWELAAVPIFLWMGEIILRTDLSQRLFRGLSPLVARIPGGLIHTNVLGCTVFAAISGSGTATTATVGKITIPELTRRGYNTSLSVGSLAGAGSFGLLIPPSIAMIVYGVLAEVSITRLFAAGVLPGLMMAGLFSGYIAIRSAISRHKPEDATERMTMRILFTSVRDLMPITLVMVVVLGSIYSGLATPSEAAAVGLAIAMVIAGIGRQLSHRMLLETLLNAVRVSTMLCVLIATSSLLSACLAYMNLPEEIKTWFSQAAFSPYMLLFVLALLYIVMGMFLDGTSITVMTVPIVLPVVVAAGFDPIWFGVFLIIMIELSALTPPIGLNLFILQGLTGRAINRVTLDALPFFLLMCFGTLILTLFPIIALWLPSLL
>NZ_CP014275.1|WP_024707256.1|2296410_2297004_-|peptidylprolyl-isomerase
MAKVSTPIVEFICDFGAIEIELYPEQAPHTARNFLAYCDKGLLDGASVFRIVTPKNDRPERSCDSRAVQWGWRPEKARYDPALGRGWDPMDAPENLPFPPVPLETTEITGLRHKRGTVSMGRDSAGLSGPHFFFCVEDAPYFDFGGKRNPDGRGFAAFAQIVSGFEVLDRLYGLAEPITWMMHPYPIRSVRRKVFHG
>NZ_CP014275.1|WP_024707257.1|2295493_2296420_+|LysR-family-transcriptional-regulator
MEIKMRQLEAFRAVVKLTSVSGAARALGLSQPTVSNLITSLETELGVQLFQRVKKRLVPTTEGLSFFGEVDRTFSSIERLTNAAGRLTTPSSAWLQVVLPQSFVVSIIPEALRILHQSNPGIGVTLEYLPSKEAVELVASGEWNFGIARMPISNRAVEARTIMQSAYVCVLPEGHPLCNRDRITPRDLAGEPLVLQSRRHEARFTIEEAFRKAGVRPTSVVETGALTGSCALTSAGIGISILDAILLEGYPDKSLTVRPFDPAITNQFALLREKTADLSPEATAFFEAIMTATRAMADASRNWLTIYP
>NZ_CP014275.1|WP_024710167.1|2310344_2310635_-|CRISPR-associated-endonuclease-Cas2
MLVLVTYDVRVSEGNGAARLRAVAKACRDFGQRVQYSVFEIEVDPAQWTRLKARLEGIIKPEMDSLRYYYLGANWQRRVEHVGAKPAVDLNGPLMI
>NZ_CP014275.1|WP_024710166.1|2310644_2311679_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTFYAMTEGVALSKDGENLVAAIEGAERGRVPLHMLSGVVVFGAVYCSPPLMGALADAGITLTFLTRSGKFQARLEGPVSGNVLLRRAQYRASDQPVEIVRSIVTGKVANQRAVLMRSLRDYGSEYPSETRAALEDAGARLARIARRSELSEDTVDGLRGLEGEAANLYFSVFDHLIRAPDPEICWRGRSRRPPLDPVNALLSFLYTLLVHDCRSALEAVGLDPAVGFLHRDRPGRPSLALDLMEELRPVLADRLALSLFNRRQLRVSDFEVRDGGAVVMSDEARKTVIATWQERKKVEREHPFLGEKAPVGLVPYLQAQLLARHLRGDLDAYPPWFWK
>NZ_CP014275.1|WP_024710165.1|2311678_2312338_-|CRISPR-associated-protein-Cas4
MGAGEPIPISALQHAVYCLRQAALIHLERVWADNRFTAEGDVLHAVADKGGKRKARGLRRVMALPVACRRLNISGIADMVEFQLSPDGRETAFPVEYKRGKAKLHRADEVQLCAQALCLEEMTGMPVAEGALFYGETKRRIAVPFDADLRALTEETIAAFAGMLASGETPPPTDRRSRCRACSLIEICRPEAFGRPVCAWRRRQVEALVAESGAEGGDG
>NZ_CP014275.1|WP_024710164.1|2312371_2313322_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTIIKNRYDFSVIFEVKNGNPNGDPDAGNLPRLDPETNKGLVTDVSLKRKIRNYVDLARQGEDGFHIYVEEGSILNEKHREAYKSIYTDDPKVDKAAKLNPKDDAEAKVLTGFMCANFFDVRTFGAVMSTGINCGQVKGPVQMSFAASVEPIMPLEISITRMAATNAAELKQKAEGDDSADRTDNRTMGRKYIVPYGLYVSHGFISAKFAERTGFSESDLELLFEAIANMFEHDRSAARGEMATRKLIVFRHESALGNAPAHALFERVRIGRNIGGEFKPVDERLDNYPPARAFADYIVEIDRDNLPDGVEIIEKL
>NZ_CP014275.1|WP_024710163.1|2313318_2315097_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MTILASLVNAYDRLSDAPPIGYSSEKIGFVVSLNEDGSVASVSDLREGEGKRMRARQMLVPQPVKRTAGVAPNFLWDKTSYVLGVTAGEGKRTADEHAAFVERHLTDIGGTDDAGLRALLSFLQSWTPERFGEPVWPEDMKDQNVIFALESDRLAHIYIHDRPAAKALWARLSTAGDGGEQICLVTGDKMPPTRLHPSIKGVWGAQSSGAALVSFNLDAFTSYGHEQGANAPVSENAAFKYTTVLNRFLERDSGHRVQVGDASTVFWADSANMKRAEEAESLFSMFLEPPGEETGGTADDDKAETRKIEVTLKRIREGQSLASIKPDLVEGVRFYVLGLSPNAARLSVRFFFSDTFGALTGNYQRYLADVRVEPPPKDGFAPLWRYLQETAVLGKRENVQPNLAGEWMRAILSGTHYPLSLMAAVLTRIRADGNVNALRVGILKALLIRNFNMKEVPVALDPENGDRGYLLGRLFAVYEEMQRAALGGRVNATIRDKFYGSASAQPRKVFAVLENNSANHLAKVRKTSPGREYNLKKLQDEIMDRMNPNDDPYPSSLRAQEQALFGLGYHHQHSNFFKPKSDEATIQGGVEE
>NZ_CP014275.1|WP_024710162.1|2315093_2315792_-|type-I-C-CRISPR-associated-protein-Cas5
MAYGIRLKVWGDYACFTRPEMKVERVSYDVMTPSAARGILEAIHWKPAIRWVIDAIHVLEPIRFQSIRRNEVGHKAPAGKIKSAMKRGDLEGLNLLVDEDRQQRAATVLVRPAYVIEARFEMTEKAGPDDNEGKHLDTFNRRARRGQCFNQPCLGTREFSAAFELIEPDDRTPQAAAEHRTASLGFGAARDLGFVLYDIDHGAEGRPSLFFRALLEDGVVKVPPPNSPEVRR
>NZ_CP014275.1|WP_024710161.1|2315831_2318096_-|CRISPR-associated-helicase/endonuclease-Cas3
MSKAYFAHSTPGKVQSDWQALSDHLFAVASLASEMGGPLGIGRACFAAGLFHDLGKYNPIFQRRLAGENLRIDHSTAGAKLLREVAEGVDRQMAEIIAYAILGHHAGLPDRLNETNACYNWRIDNSPEIDPVWRDELGETPRDLAPMDILRKIPSGRNAGFALSVFGRMVFSCLVDADFRDTEAFYSRLEGRVADRQWPLLASFLPDLSARYERHMAGFSADGDLNRLRREVLSHVRGKAGEKPGLFTLTVPTGGGKTLASLGFALDHARIHGHRRIIYAIPFTSIIEQTAAIFRQVLEQEGDSLILEHHSAIDEDRESRRGREERQQHDKLKLAMEDWAAPIVVTTNVQLFESLFASRTSRARKLHNIAGSIIILDEAQTLPRHYLFPVMRMLEALVEQYGCTIILCTATQPALGARPDFQQGLALEGRELAPDPNGLAGRLARATIRHGGTMDNDALIAALEENEQALVIVNSRRHALELFRDAEAARLSGLVHLSTRLCAVHRREILGRVKARLKAGGPCRVIATSLVEAGVDIDFPCVLRAEAGLDQIVQAAGRCNREGGRRREESFVTVFDPADYAPPTEIKGMIGDMKRMIGKHDDLLSLPAIEDYFREVYWRKGEKGLDGKGILDRFTVTLSGTDFAYRSVAEEFRIIESGMEPVVIPYDDKARQAVADLGIENISSGRLARVLQSYIVQVPPKARALLVANGHARFERPDLRGDQFMLLQTASLYGPELGLLWEEAEYLAAENMIF
>NZ_CP014275.1|WP_024710160.1|2318436_2319078_-|hypothetical-protein
MTRDMTSLEAELGTDSLRRLERDAALRRMRLDEQHALTEAHDQATWYVAAVHPGHEQQVETVLKDIGAEALVPMRKGKQRRRRGRMLPVRDEVLMTGYVLVRFVSTARALRGLLSLDHVIAILGGWETPYPVSDDKVAQIMRKADNGDFDYERHSDVMVEAGDRVMIGDGIFEGQVGTVVTANSKGKGDVVVEVDLFGRLTPMVVPLAVVGKV
>NZ_CP014275.1|WP_061449671.1|2319074_2319824_-|hypothetical-protein
MSAESDAPGRKTVRKAFLKFYRQWPTFGDDSDERAFAEWQALHHAEREAAASLLPAFLSFAAMKGQTVKFAASTYLKERRWQEVPEGMEATTGPSIAATFGKAWMAERFIRLADPCAHLPPLTRFQESQIADGRADRKALWRERMQKMGWPAVNAMHEQAVRYPGRGVRVSPQTVLLSADFEQVRVDGNLWRAWEAEHHAHGYPWLPDTGRVEWVYFPPIPDEDGPKAALAAFFDRLERIGRTSGAAAQ
>NZ_CP014275.1|WP_024708485.1|2319813_2320257_-|hypothetical-protein
MKAALEPAESHQSDLMLTKLIERGFVVPDSIDPDMAPELYAEVLCGKPIAAMRRVFENLRLGRYERYRSFLPKPAELSAMIDEAARHDREMLVLERERQKAVEERRRLTRQMSEEERERRRKKAAAVRAMLAKAAAARMVKEETDER

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014275_1	1.1\|134296\|28\|NZ_CP014275\|CRISPRCasFinder	134296-134323	28	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	573003-573030	4	0.857
NZ_CP014275_3	3.1\|2307669\|33\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2307669-2307701	33	NZ_CP037735	Citrobacter freundii strain CAV1857 plasmid pCAV1857-208, complete sequence	131405-131437	6	0.818
NZ_CP014275_3	3.1\|2307669\|33\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2307669-2307701	33	CP045556	Citrobacter sp. S39 plasmid pS39-1, complete sequence	184334-184366	6	0.818
NZ_CP014275_3	3.1\|2307669\|33\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2307669-2307701	33	NZ_CP045203	Citrobacter sp. NMI7904_11 plasmid pCTEL-2, complete sequence	73351-73383	6	0.818
NZ_CP014275_3	3.1\|2307669\|33\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2307669-2307701	33	NZ_CP022152	Citrobacter freundii strain 705SK3 plasmid p705SK3_1, complete sequence	214345-214377	6	0.818
NZ_CP014275_3	3.1\|2307669\|33\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2307669-2307701	33	NZ_CP030224	Salmonella enterica strain SA20083039 plasmid pSA20083039.1, complete sequence	166178-166210	6	0.818
NZ_CP014275_3	3.1\|2307669\|33\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2307669-2307701	33	NZ_CP041248	Raoultella electrica strain DSM 102253 plasmid unnamed1, complete sequence	225832-225864	6	0.818
NZ_CP014275_3	3.1\|2307669\|33\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2307669-2307701	33	NZ_CP011611	Citrobacter freundii strain CAV1321 plasmid pKPC_CAV1321-244, complete sequence	166487-166519	6	0.818
NZ_CP014275_3	3.1\|2307669\|33\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2307669-2307701	33	CP052139	Klebsiella pneumoniae strain F17KP0040 plasmid pF17KP0040-1, complete sequence	217608-217640	6	0.818
NZ_CP014275_3	3.1\|2307669\|33\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2307669-2307701	33	NZ_MG387191	Citrobacter freundii strain 2262 plasmid pTEM-2262, complete sequence	188476-188508	6	0.818
NZ_CP014275_3	3.1\|2307669\|33\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2307669-2307701	33	NZ_CP042535	Citrobacter freundii strain E51 plasmid pE51_001, complete sequence	27432-27464	6	0.818
NZ_CP014275_3	3.1\|2307669\|33\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2307669-2307701	33	NZ_CP026058	Citrobacter freundii strain FDAARGOS_73 plasmid unnamed2, complete sequence	170731-170763	6	0.818
NZ_CP014275_3	3.1\|2307669\|33\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2307669-2307701	33	NZ_CP029436	Klebsiella quasipneumoniae strain CAV2013 plasmid pKPC_CAV2013, complete sequence	205431-205463	6	0.818
NZ_CP014275_3	3.1\|2307669\|33\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2307669-2307701	33	NZ_CP029431	Klebsiella quasipneumoniae strain CAV2018 plasmid pKPC_CAV2018-435, complete sequence	326086-326118	6	0.818
NZ_CP014275_3	3.1\|2307669\|33\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2307669-2307701	33	NZ_CP018017	Kosakonia radicincitans DSM 16656 plasmid pKrDSM16656L, complete sequence	51182-51214	6	0.818
NZ_CP014275_3	3.1\|2307669\|33\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2307669-2307701	33	NZ_CP029442	Klebsiella quasipneumoniae strain CAV1947 plasmid pKPC_CAV1947-412, complete sequence	297285-297317	6	0.818
NZ_CP014275_3	3.8\|2308139\|34\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2308139-2308172	34	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	1168699-1168732	6	0.824
NZ_CP014275_3	3.5\|2307935\|35\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2307935-2307969	35	MN234221	Arthrobacter phage Shepard, complete genome	15362-15396	7	0.8
NZ_CP014275_3	3.5\|2307935\|35\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2307935-2307969	35	MH479913	Gordonia phage Fryberger, complete genome	30936-30970	7	0.8
NZ_CP014275_2	2.2\|2305835\|36\|NZ_CP014275\|CRISPRCasFinder,CRT,PILER-CR	2305835-2305870	36	CP018090	Xanthomonas oryzae pv. oryzae strain YN24 plasmid pXOOYN24, complete sequence	27416-27451	8	0.778
NZ_CP014275_2	2.3\|2305903\|35\|NZ_CP014275\|CRISPRCasFinder,CRT,PILER-CR	2305903-2305937	35	NZ_CP041042	Paracoccus sp. AK26 plasmid pAK4, complete sequence	29875-29909	8	0.771
NZ_CP014275_3	3.5\|2307935\|35\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2307935-2307969	35	NC_016623	Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence	579059-579093	8	0.771
NZ_CP014275_3	3.5\|2307935\|35\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2307935-2307969	35	NC_019937	Pseudomonas stutzeri RCH2 plasmid pPSEST01, complete sequence	8764-8798	8	0.771
NZ_CP014275_3	3.8\|2308139\|34\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2308139-2308172	34	NZ_CP049911	Diaphorobacter sp. HDW4A plasmid p_unnamed1, complete sequence	102848-102881	8	0.765
NZ_CP014275_3	3.11\|2308337\|34\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2308337-2308370	34	NZ_CP005190	Sphingobium sp. MI1205 plasmid pMI1, complete sequence	236039-236072	8	0.765
NZ_CP014275_3	3.19\|2308867\|34\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2308867-2308900	34	NC_009427	Novosphingobium aromaticivorans DSM 12444 plasmid pNL2, complete sequence	154322-154355	8	0.765
NZ_CP014275_3	3.25\|2309264\|34\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2309264-2309297	34	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	717815-717848	8	0.765
NZ_CP014275_3	3.5\|2307935\|35\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2307935-2307969	35	MH153808	Gordonia phage Petra, complete genome	40761-40795	9	0.743
NZ_CP014275_3	3.5\|2307935\|35\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2307935-2307969	35	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	461648-461682	9	0.743
NZ_CP014275_3	3.8\|2308139\|34\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2308139-2308172	34	NZ_CP013746	Arthrobacter alpinus strain A3 plasmid unnamed, complete sequence	167220-167253	9	0.735
NZ_CP014275_3	3.25\|2309264\|34\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2309264-2309297	34	NZ_CP020909	Rhizobium etli strain NXC12 plasmid pRetNXC12c, complete sequence	235780-235813	9	0.735
NZ_CP014275_2	2.2\|2305835\|36\|NZ_CP014275\|CRISPRCasFinder,CRT,PILER-CR	2305835-2305870	36	NZ_CP022999	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence	1106492-1106527	10	0.722
NZ_CP014275_2	2.6\|2306104\|34\|NZ_CP014275\|CRISPRCasFinder,CRT,PILER-CR	2306104-2306137	34	NZ_CP026928	Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609b, complete sequence	9295-9328	10	0.706
NZ_CP014275_3	3.5\|2307935\|35\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2307935-2307969	35	NC_007507	Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183, complete sequence	12844-12878	10	0.714
NZ_CP014275_3	3.5\|2307935\|35\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2307935-2307969	35	NZ_CP017191	Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid p_XCV_1, complete sequence	50084-50118	10	0.714
NZ_CP014275_3	3.5\|2307935\|35\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2307935-2307969	35	CP053333	Salmonella enterica subsp. diarizonae serovar 47:k:z35 strain 2009K1094 plasmid unnamed1, complete sequence	32876-32910	10	0.714
NZ_CP014275_3	3.5\|2307935\|35\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2307935-2307969	35	MN693327	Marine virus AFVG_25M484, complete genome	2205-2239	10	0.714
NZ_CP014275_3	3.13\|2308469\|35\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2308469-2308503	35	NZ_CP015089	Pelagibaca abyssi strain JLT2014 plasmid pPABY5, complete sequence	67446-67480	10	0.714
NZ_CP014275_3	3.17\|2308734\|35\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2308734-2308768	35	NZ_CP039632	Pseudomonas veronii strain Pvy plasmid unnamed, complete sequence	96437-96471	10	0.714
NZ_CP014275_3	3.17\|2308734\|35\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2308734-2308768	35	NZ_CP007510	Pseudomonas stutzeri strain 19SMN4 plasmid pLIB119, complete plasmid	82285-82319	10	0.714
NZ_CP014275_3	3.17\|2308734\|35\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2308734-2308768	35	NZ_AP015030	Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence	52695-52729	10	0.714
NZ_CP014275_3	3.25\|2309264\|34\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2309264-2309297	34	NZ_CP016905	Ralstonia solanacearum strain KACC 10709 plasmid unnamed1	2031927-2031960	10	0.706
NZ_CP014275_3	3.25\|2309264\|34\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2309264-2309297	34	NZ_CP022791	Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence	963975-964008	10	0.706
NZ_CP014275_3	3.31\|2309662\|35\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2309662-2309696	35	NZ_CP054617	Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence	634135-634169	10	0.714
NZ_CP014275_3	3.5\|2307935\|35\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2307935-2307969	35	AP017627	Pleomorphomonas sp. SM30 plasmid pSM30-1 DNA, complete genome	53620-53654	11	0.686
NZ_CP014275_3	3.8\|2308139\|34\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2308139-2308172	34	NZ_CP021805	Sinorhizobium meliloti strain T073 plasmid psymA, complete sequence	1006873-1006906	11	0.676
NZ_CP014275_3	3.8\|2308139\|34\|NZ_CP014275\|PILER-CR,CRISPRCasFinder,CRT	2308139-2308172	34	NZ_CP021807	Sinorhizobium meliloti strain T073 plasmid accessoryA, complete sequence	38402-38435	11	0.676

1. spacer 1.1|134296|28|NZ_CP014275|CRISPRCasFinder matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 4, identity: 0.857

tccgtccggacgcgcgtaaaacaaacca	CRISPR spacer
tccgtccggacgcgcgtaaaaacaaaaa	Protospacer
*********************  **  *

2. spacer 3.1|2307669|33|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP037735 (Citrobacter freundii strain CAV1857 plasmid pCAV1857-208, complete sequence) position: , mismatch: 6, identity: 0.818

tagcgctgatcagtccgtccaggtgct-cgtatt	CRISPR spacer
caacgctgatcagttcgtccagatgctacgtaa-	Protospacer
.*.***********.*******.**** ****

3. spacer 3.1|2307669|33|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to CP045556 (Citrobacter sp. S39 plasmid pS39-1, complete sequence) position: , mismatch: 6, identity: 0.818

tagcgctgatcagtccgtccaggtgct-cgtatt	CRISPR spacer
caacgctgatcagttcgtccagatgctacgtaa-	Protospacer
.*.***********.*******.**** ****

4. spacer 3.1|2307669|33|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045203 (Citrobacter sp. NMI7904_11 plasmid pCTEL-2, complete sequence) position: , mismatch: 6, identity: 0.818

tagcgctgatcagtccgtccaggtgct-cgtatt	CRISPR spacer
caacgctgatcagttcgtccagatgctacgtaa-	Protospacer
.*.***********.*******.**** ****

5. spacer 3.1|2307669|33|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022152 (Citrobacter freundii strain 705SK3 plasmid p705SK3_1, complete sequence) position: , mismatch: 6, identity: 0.818

tagcgctgatcagtccgtccaggtgct-cgtatt	CRISPR spacer
caacgctgatcagttcgtccagatgctacgtaa-	Protospacer
.*.***********.*******.**** ****

6. spacer 3.1|2307669|33|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030224 (Salmonella enterica strain SA20083039 plasmid pSA20083039.1, complete sequence) position: , mismatch: 6, identity: 0.818

tagcgctgatcagtccgtccaggtgct-cgtatt	CRISPR spacer
caacgctgatcagttcgtccagatgctacgtaa-	Protospacer
.*.***********.*******.**** ****

7. spacer 3.1|2307669|33|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041248 (Raoultella electrica strain DSM 102253 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.818

tagcgctgatcagtccgtccaggtgct-cgtatt	CRISPR spacer
caacgctgatcagttcgtccagatgctacgtaa-	Protospacer
.*.***********.*******.**** ****

8. spacer 3.1|2307669|33|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011611 (Citrobacter freundii strain CAV1321 plasmid pKPC_CAV1321-244, complete sequence) position: , mismatch: 6, identity: 0.818

tagcgctgatcagtccgtccaggtgct-cgtatt	CRISPR spacer
caacgctgatcagttcgtccagatgctacgtaa-	Protospacer
.*.***********.*******.**** ****

9. spacer 3.1|2307669|33|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to CP052139 (Klebsiella pneumoniae strain F17KP0040 plasmid pF17KP0040-1, complete sequence) position: , mismatch: 6, identity: 0.818

tagcgctgatcagtccgtccaggtgct-cgtatt	CRISPR spacer
caacgctgatcagttcgtccagatgctacgtaa-	Protospacer
.*.***********.*******.**** ****

10. spacer 3.1|2307669|33|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG387191 (Citrobacter freundii strain 2262 plasmid pTEM-2262, complete sequence) position: , mismatch: 6, identity: 0.818

tagcgctgatcagtccgtccaggtgct-cgtatt	CRISPR spacer
caacgctgatcagttcgtccagatgctacgtaa-	Protospacer
.*.***********.*******.**** ****

11. spacer 3.1|2307669|33|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042535 (Citrobacter freundii strain E51 plasmid pE51_001, complete sequence) position: , mismatch: 6, identity: 0.818

tagcgctgatcagtccgtccaggtgct-cgtatt	CRISPR spacer
caacgctgatcagttcgtccagatgctacgtaa-	Protospacer
.*.***********.*******.**** ****

12. spacer 3.1|2307669|33|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026058 (Citrobacter freundii strain FDAARGOS_73 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.818

tagcgctgatcagtccgtccaggtgct-cgtatt	CRISPR spacer
caacgctgatcagttcgtccagatgctacgtaa-	Protospacer
.*.***********.*******.**** ****

13. spacer 3.1|2307669|33|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029436 (Klebsiella quasipneumoniae strain CAV2013 plasmid pKPC_CAV2013, complete sequence) position: , mismatch: 6, identity: 0.818

tagcgctgatcagtccgtccaggtgct-cgtatt	CRISPR spacer
caacgctgatcagttcgtccagatgctacgtaa-	Protospacer
.*.***********.*******.**** ****

14. spacer 3.1|2307669|33|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029431 (Klebsiella quasipneumoniae strain CAV2018 plasmid pKPC_CAV2018-435, complete sequence) position: , mismatch: 6, identity: 0.818

tagcgctgatcagtccgtccaggtgct-cgtatt	CRISPR spacer
caacgctgatcagttcgtccagatgctacgtaa-	Protospacer
.*.***********.*******.**** ****

15. spacer 3.1|2307669|33|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018017 (Kosakonia radicincitans DSM 16656 plasmid pKrDSM16656L, complete sequence) position: , mismatch: 6, identity: 0.818

tagcgctgatcagtccgtccaggtgct-cgtatt	CRISPR spacer
caacgctgatcagttcgtccagatgctacgtaa-	Protospacer
.*.***********.*******.**** ****

16. spacer 3.1|2307669|33|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029442 (Klebsiella quasipneumoniae strain CAV1947 plasmid pKPC_CAV1947-412, complete sequence) position: , mismatch: 6, identity: 0.818

tagcgctgatcagtccgtccaggtgct-cgtatt	CRISPR spacer
caacgctgatcagttcgtccagatgctacgtaa-	Protospacer
.*.***********.*******.**** ****

17. spacer 3.8|2308139|34|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 6, identity: 0.824

-ccagcccggccgaagagctcgttgttgtcgtcga	CRISPR spacer
tcccgtacgg-cgaagacctcgtggttgtcgtcga	Protospacer
 ** *. *** ****** ***** ***********

18. spacer 3.5|2307935|35|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to MN234221 (Arthrobacter phage Shepard, complete genome) position: , mismatch: 7, identity: 0.8

ttccggtgagggtggcggtggcggtggatacgcag	CRISPR spacer
tgctggtggcggtggcggtggcggtggatattcat	Protospacer
* *.****. ********************. **

19. spacer 3.5|2307935|35|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to MH479913 (Gordonia phage Fryberger, complete genome) position: , mismatch: 7, identity: 0.8

ttccggtgagggtggcggtggcggtggat-acgcag	CRISPR spacer
aggcggtggcggtggcggtggcggtggatcacgaa-	Protospacer
   *****. ******************* *** *

20. spacer 2.2|2305835|36|NZ_CP014275|CRISPRCasFinder,CRT,PILER-CR matches to CP018090 (Xanthomonas oryzae pv. oryzae strain YN24 plasmid pXOOYN24, complete sequence) position: , mismatch: 8, identity: 0.778

tagcagcgccggccgttgccgatgccgctgtaacct	CRISPR spacer
ccgcagcgccggccgttgccgctgctgctgctgccg	Protospacer
. ******************* ***.****. .**

21. spacer 2.3|2305903|35|NZ_CP014275|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041042 (Paracoccus sp. AK26 plasmid pAK4, complete sequence) position: , mismatch: 8, identity: 0.771

gcccataccggaa-ccttggcgcgcgcttcctcgag	CRISPR spacer
-atcacgccgggatccttggcgcgcacttcctcgat	Protospacer
  .**..****.* ***********.*********

22. spacer 3.5|2307935|35|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NC_016623 (Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence) position: , mismatch: 8, identity: 0.771

ttccggtgagggtggcggtggcggtggatacgcag	CRISPR spacer
tgccggtggcggtggcggtggcggtggcggtgccg	Protospacer
* ******. *****************  ..** *

23. spacer 3.5|2307935|35|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NC_019937 (Pseudomonas stutzeri RCH2 plasmid pPSEST01, complete sequence) position: , mismatch: 8, identity: 0.771

ttccggtgagggtggcggtggcggtgga-tacgcag	CRISPR spacer
tggcggtggcggtggcggtggcggtggagtatcta-	Protospacer
*  *****. ****************** **. .*

24. spacer 3.8|2308139|34|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049911 (Diaphorobacter sp. HDW4A plasmid p_unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

ccagcccggccgaagagctcgttgttgtcgtcga	CRISPR spacer
acctcgctgccgaagagctcgtggttgtcggcgc	Protospacer
 *  * * ************** ******* **

25. spacer 3.11|2308337|34|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP005190 (Sphingobium sp. MI1205 plasmid pMI1, complete sequence) position: , mismatch: 8, identity: 0.765

ctcaggcgctttgcctgtctttgccgacgctgaa-	CRISPR spacer
gccaggcgctttgcatgcctttgccg-cgccgggt	Protospacer
 .************ **.******** ***.*..

26. spacer 3.19|2308867|34|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NC_009427 (Novosphingobium aromaticivorans DSM 12444 plasmid pNL2, complete sequence) position: , mismatch: 8, identity: 0.765

gccacggccatgcggatatcggcggtg-atctgca	CRISPR spacer
atcacggcctcgcggatatcggcggtgcggccgc-	Protospacer
..******* .**************** . *.**

27. spacer 3.25|2309264|34|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

gcgtctcggtggcgtccagccccgacgcctacgt	CRISPR spacer
tcatctcggtggcgtacagcccggacggccgcat	Protospacer
 *.************ ****** **** *..*.*

28. spacer 3.5|2307935|35|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to MH153808 (Gordonia phage Petra, complete genome) position: , mismatch: 9, identity: 0.743

ttccggtgagggtggcggtggcggtggatacgcag	CRISPR spacer
atccggtgagggtggcggcgacggtggcggctgcg	Protospacer
 *****************.*.******  .*   *

29. spacer 3.5|2307935|35|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 9, identity: 0.743

ttccggtgagggtggcggtggcggtggatacgcag-	CRISPR spacer
ccaacctgaaggtggcggtggcggtggagac-cagc	Protospacer
..    ***.****************** ** ***

30. spacer 3.8|2308139|34|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013746 (Arthrobacter alpinus strain A3 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

ccagcccggccgaagagctcgttgttgtcgtcga	CRISPR spacer
tgatgtcggcagaagagttcgttgttgtcgctga	Protospacer
. *  .**** ******.************..**

31. spacer 3.25|2309264|34|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020909 (Rhizobium etli strain NXC12 plasmid pRetNXC12c, complete sequence) position: , mismatch: 9, identity: 0.735

gcgtctcggtggcgtccagccccgacgcctacgt	CRISPR spacer
cgatttcggtgccgtccagcaccgacgccgaggc	Protospacer
  .*.****** ******** ******** * *.

32. spacer 2.2|2305835|36|NZ_CP014275|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022999 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence) position: , mismatch: 10, identity: 0.722

tagcagcgccggccgttgccgatgccgctgtaacct	CRISPR spacer
tcaagtccacggccgttgccgatgccggtgtcacca	Protospacer
* . . *  ****************** *** ***

33. spacer 2.6|2306104|34|NZ_CP014275|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026928 (Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609b, complete sequence) position: , mismatch: 10, identity: 0.706

cgcgtagggctatctgtgcccgctgcttgcgggt	CRISPR spacer
ccaaccctgccatctgtgcccgctgcttgaggat	Protospacer
*  ..   **.****************** **.*

34. spacer 3.5|2307935|35|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NC_007507 (Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183, complete sequence) position: , mismatch: 10, identity: 0.714

ttccggtgagggtggcggtggcggtggatacgcag	CRISPR spacer
ctccggtggcggtggcggtggcggtggcggtggca	Protospacer
.*******. *****************  ..*  .

35. spacer 3.5|2307935|35|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017191 (Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid p_XCV_1, complete sequence) position: , mismatch: 10, identity: 0.714

ttccggtgagggtggcggtggcggtggatacgcag	CRISPR spacer
ctccggtggcggtggcggtggcggtggcggtggca	Protospacer
.*******. *****************  ..*  .

36. spacer 3.5|2307935|35|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to CP053333 (Salmonella enterica subsp. diarizonae serovar 47:k:z35 strain 2009K1094 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.714

ttccggtgagggtggcggtggcggtggatacgcag	CRISPR spacer
caccggtgacggtgacggtggcggtggcagcgagc	Protospacer
. ******* ****.************  .** .

37. spacer 3.5|2307935|35|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to MN693327 (Marine virus AFVG_25M484, complete genome) position: , mismatch: 10, identity: 0.714

ttccggtgagggtggcggtggcggtggatacgcag	CRISPR spacer
agccggtggtggtggcggtggcggtggtgggggtg	Protospacer
  ******. *****************  . *  *

38. spacer 3.13|2308469|35|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015089 (Pelagibaca abyssi strain JLT2014 plasmid pPABY5, complete sequence) position: , mismatch: 10, identity: 0.714

gtcaacctgatcggcaaagcgctgcatctcggatt	CRISPR spacer
ctggtcctgctcggcaaagcgctggatctcgcgcc	Protospacer
 * . **** ************** ****** ...

39. spacer 3.17|2308734|35|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039632 (Pseudomonas veronii strain Pvy plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.714

gtgcaggcgcgctgttcggacttgcggtcggcaag	CRISPR spacer
gcctcgatgcgctgttcggtcttgcggtcgtcagt	Protospacer
*. . *..*********** ********** **.

40. spacer 3.17|2308734|35|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007510 (Pseudomonas stutzeri strain 19SMN4 plasmid pLIB119, complete plasmid) position: , mismatch: 10, identity: 0.714

gtgcaggcgcgctgttcggacttgcggtcggcaag	CRISPR spacer
gcctcgatgcgctgttcggtcttgcggtcgtcagt	Protospacer
*. . *..*********** ********** **.

41. spacer 3.17|2308734|35|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP015030 (Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence) position: , mismatch: 10, identity: 0.714

gtgcaggcgcgctgttcggacttgcggtcggcaag	CRISPR spacer
gcctcgatgcgctgttcggtcttgcggtcgtcagt	Protospacer
*. . *..*********** ********** **.

42. spacer 3.25|2309264|34|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016905 (Ralstonia solanacearum strain KACC 10709 plasmid unnamed1) position: , mismatch: 10, identity: 0.706

gcgtctcggtggcgtccagccccgacgcctacgt	CRISPR spacer
gcgtctcggctgcgtccagccccgcggggcgcac	Protospacer
*********. *************  *  ..*..

43. spacer 3.25|2309264|34|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022791 (Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

gcgtctcggtggcgtccagccccgacgcctacgt	CRISPR spacer
gcgtctcggctgcgtccagccccgcggggcgcac	Protospacer
*********. *************  *  ..*..

44. spacer 3.31|2309662|35|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054617 (Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.714

gtgcgtgaagcaatggccgccgccatccgtgcaat	CRISPR spacer
gatcgcgaagctatggccgccgccatccgccacgc	Protospacer
*  **.***** *****************.   ..

45. spacer 3.5|2307935|35|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to AP017627 (Pleomorphomonas sp. SM30 plasmid pSM30-1 DNA, complete genome) position: , mismatch: 11, identity: 0.686

ttccggtgagggtggcggtggcggtggatacgcag	CRISPR spacer
ggccggtgagggtggcggtgacgatgggcgatccc	Protospacer
  ******************.**.***...  *

46. spacer 3.8|2308139|34|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021805 (Sinorhizobium meliloti strain T073 plasmid psymA, complete sequence) position: , mismatch: 11, identity: 0.676

ccagcccggccgaagagctcgttgttgtcgtcga	CRISPR spacer
tcgaggttgccgaagagctcgttgaggtcgtcct	Protospacer
.*..  . ****************  ******

47. spacer 3.8|2308139|34|NZ_CP014275|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021807 (Sinorhizobium meliloti strain T073 plasmid accessoryA, complete sequence) position: , mismatch: 11, identity: 0.676

ccagcccggccgaagagctcgttgttgtcgtcga	CRISPR spacer
tcgaggttgccgaagagctcgttgaggtcgtcct	Protospacer
.*..  . ****************  ******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

249536 : 262122

Streptococcus_phage(18.18%)

transposase,capsid,tail,protease,head,portal,terminase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024708552.1\|249536_250298_+	hypothetical protein	A0A240F4T8	Ochrobactrum_phage	5.4e-12	38.5
WP_024708553.1\|250454_251687_+\|portal	phage portal protein	E4ZFM3	Streptococcus_phage	3.5e-45	33.7
WP_081725796.1\|251724_252063_+	hypothetical protein	NA	NA	NA	NA
WP_024708555.1\|252065_252572_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	7.1e-21	40.3
WP_024708556.1\|252568_253723_+\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	2.4e-40	31.0
WP_024708557.1\|253734_254115_+	hypothetical protein	NA	NA	NA	NA
WP_036237320.1\|254149_254380_+	hypothetical protein	I3UM19	Rhodobacter_phage	2.6e-10	50.0
WP_024708559.1\|254384_254732_+	HNH endonuclease	A0A2H4PHY5	Pseudomonas_phage	4.9e-13	47.4
WP_024708560.1\|254742_255234_+	hypothetical protein	A0A076GD25	Sinorhizobium_phage	1.4e-13	41.4
WP_156484712.1\|255296_255437_+	hypothetical protein	NA	NA	NA	NA
WP_081725793.1\|255441_255543_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_152534486.1\|255579_256808_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	2.5e-104	66.5
WP_082781115.1\|256730_257075_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_024706305.1\|257076_257493_+	HK97 gp10 family phage protein	A0A0R8V1F4	Thermobifida_phage	1.2e-05	32.8
WP_024706306.1\|257492_257903_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_024706307.1\|257899_258229_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_024706308.1\|258225_258642_+\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_036235642.1\|258613_260233_+\|terminase	terminase large subunit	A0A1X9I6B3	Streptococcus_phage	7.7e-85	35.6
WP_152534422.1\|260406_262122_+	hypothetical protein	A0A291AUM6	Sinorhizobium_phage	5.2e-63	39.8

DBSCAN-SWA_2

1317043 : 1378368

Sinorhizobium_phage(41.67%)

transposase,integrase,portal,terminase,tRNA

attL 1324614:1324630|attR 1376687:1376703

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024705982.1\|1317043_1318822_+\|terminase	phage terminase large subunit family protein	G8EXZ6	Synechococcus_phage	1.1e-95	34.4
WP_152534399.1\|1319850_1320258_-	hypothetical protein	NA	NA	NA	NA
WP_024705980.1\|1320268_1320475_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_024705979.1\|1320591_1321131_+	hypothetical protein	NA	NA	NA	NA
WP_024705978.1\|1321215_1321824_+	hypothetical protein	NA	NA	NA	NA
WP_024705977.1\|1321860_1323183_+\|portal	phage portal protein	Q9JMM5	Wolbachia_phage	2.1e-43	30.7
WP_024705976.1\|1323179_1324991_+	hypothetical protein	NA	NA	NA	NA
1324614:1324630	attL	NA	NA	NA	NA
WP_036235351.1\|1324990_1325236_+	hypothetical protein	A0A291AUL5	Sinorhizobium_phage	1.6e-10	57.9
WP_024705974.1\|1325232_1325553_+	DUF2190 family protein	A0A2I7QRW1	Vibrio_phage	1.8e-06	34.3
WP_024705973.1\|1325722_1325977_+	hypothetical protein	NA	NA	NA	NA
WP_024705972.1\|1325973_1327092_+\|integrase	tyrosine-type recombinase/integrase	A0A291AUF0	Sinorhizobium_phage	1.1e-50	35.8
WP_024707025.1\|1328068_1328434_+	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA
WP_024707024.1\|1328424_1329003_+	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA
WP_024707023.1\|1329018_1329615_+	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA
WP_024707022.1\|1329625_1330060_+	GFA family protein	NA	NA	NA	NA
WP_024707021.1\|1330056_1331247_+	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA
WP_024707020.1\|1331369_1332332_+	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA
WP_024707019.1\|1332341_1333640_+	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA
WP_024707018.1\|1333644_1333944_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_024707017.1\|1334029_1336111_+	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA
WP_024707016.1\|1336121_1337168_+	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA
WP_024707015.1\|1337208_1337700_+	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA
WP_024707014.1\|1337838_1338453_+	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA
WP_024707013.1\|1338495_1338804_+	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA
WP_024707012.1\|1338811_1340821_+	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA
WP_024707011.1\|1340820_1342332_+	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA
WP_024707010.1\|1342349_1343789_+	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA
WP_024707009.1\|1343789_1344554_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_024707008.1\|1344561_1346235_+	ribonuclease J	NA	NA	NA	NA
WP_061449646.1\|1346583_1347456_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_024708344.1\|1347608_1348391_+	N-formylglutamate amidohydrolase	NA	NA	NA	NA
WP_024708343.1\|1348390_1348900_+	TRAP transporter small permease subunit	NA	NA	NA	NA
WP_036237186.1\|1348914_1350225_+	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_024708341.1\|1350329_1351376_+	twin-arginine translocation signal domain-containing protein	NA	NA	NA	NA
WP_024708339.1\|1351609_1352983_+	glutamine synthetase	NA	NA	NA	NA
WP_024708338.1\|1353052_1354438_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_024708337.1\|1354434_1355580_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_024708336.1\|1355633_1356293_-	hypothetical protein	NA	NA	NA	NA
WP_061449647.1\|1356420_1357617_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	5.2e-94	47.5
WP_081725905.1\|1358602_1359667_+	hypothetical protein	A0A1B1IVB5	uncultured_Mediterranean_phage	9.8e-12	24.8
WP_036238546.1\|1359691_1359919_-	sel1 repeat family protein	NA	NA	NA	NA
WP_024710204.1\|1360296_1360563_+	DUF1467 family protein	NA	NA	NA	NA
WP_024710203.1\|1360782_1361403_-	hypothetical protein	NA	NA	NA	NA
WP_024710202.1\|1361971_1363300_+\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_024710201.1\|1363313_1364615_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
WP_152534662.1\|1364648_1365323_+	ATP-binding cassette domain-containing protein	A0A2R8FG22	Brazilian_cedratvirus	8.6e-14	33.8
WP_024710198.1\|1365842_1366103_+	hypothetical protein	NA	NA	NA	NA
WP_024710197.1\|1366659_1367952_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_024710196.1\|1368070_1368349_-	hypothetical protein	NA	NA	NA	NA
WP_152534658.1\|1368330_1368942_-	hypothetical protein	A0A291AUJ2	Sinorhizobium_phage	1.1e-20	57.8
WP_152534657.1\|1369126_1369507_-	hypothetical protein	NA	NA	NA	NA
WP_024710193.1\|1369752_1370445_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_024710192.1\|1371021_1371525_+	hypothetical protein	R9TQJ7	Rhizobium_phage	2.0e-15	36.0
WP_082781087.1\|1371505_1372357_+	hypothetical protein	NA	NA	NA	NA
WP_036236360.1\|1372419_1373133_+	hypothetical protein	A0A291AUT5	Sinorhizobium_phage	1.6e-90	69.7
WP_156484722.1\|1373129_1373912_+	hypothetical protein	A0A291AUS8	Sinorhizobium_phage	2.3e-34	37.2
WP_156484723.1\|1374901_1375396_+	hypothetical protein	NA	NA	NA	NA
WP_024707307.1\|1375385_1376138_+	hypothetical protein	NA	NA	NA	NA
WP_081725722.1\|1376134_1376776_+	hypothetical protein	NA	NA	NA	NA
1376687:1376703	attR	NA	NA	NA	NA
WP_061449872.1\|1377249_1378368_-\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1437387 : 1450484

uncultured_Mediterranean_phage(81.82%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024709303.1\|1437387_1438218_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	7.6e-36	35.7
WP_024709304.1\|1438214_1438925_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.2e-36	42.2
WP_051424124.1\|1438978_1440064_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	2.5e-10	30.1
WP_024709305.1\|1440106_1440313_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	6.7e-10	70.5
WP_024709306.1\|1440358_1440919_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_024709307.1\|1440915_1441746_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	2.3e-48	40.9
WP_024709308.1\|1441853_1443137_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	9.7e-99	46.5
WP_024709309.1\|1443146_1443902_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.9e-39	39.8
WP_024709310.1\|1443918_1444572_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	7.6e-15	34.5
WP_024709311.1\|1444738_1446274_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV79	Clostridium_phage	3.6e-15	34.2
WP_081725845.1\|1446309_1447113_-	ATP-binding protein	NA	NA	NA	NA
WP_024709313.1\|1447400_1447751_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	7.9e-11	34.8
WP_061449653.1\|1447919_1450484_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.3e-62	47.2

DBSCAN-SWA_4

1488534 : 1510562

Klebsiella_phage(53.33%)

capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024709819.1\|1488534_1489842_-	hypothetical protein	A0A248SL32	Klebsiella_phage	6.8e-140	70.2
WP_024709820.1\|1489838_1490270_-	GNAT family N-acetyltransferase	A0A248SLB3	Klebsiella_phage	7.4e-51	63.6
WP_152534633.1\|1490349_1491141_-	hypothetical protein	NA	NA	NA	NA
WP_152534634.1\|1491240_1491789_-	hypothetical protein	NA	NA	NA	NA
WP_036238221.1\|1491850_1493593_-	hypothetical protein	H2DE51	Erwinia_phage	1.0e-204	59.9
WP_024709824.1\|1493592_1493964_-	hypothetical protein	A0A248SL86	Klebsiella_phage	3.9e-24	51.7
WP_024709825.1\|1493967_1496385_-	hypothetical protein	G0YQI6	Erwinia_phage	5.6e-281	58.5
WP_024709826.1\|1496480_1498823_-	hypothetical protein	H2DE46	Erwinia_phage	6.7e-29	44.8
WP_152534635.1\|1498815_1501779_-	cellulase family glycosylhydrolase	A0A248SL44	Klebsiella_phage	2.7e-152	38.2
WP_024709828.1\|1501861_1502464_-	hypothetical protein	A0A248SL37	Klebsiella_phage	1.8e-47	50.8
WP_024709829.1\|1502463_1503195_-	hypothetical protein	H2DE43	Erwinia_phage	5.4e-70	56.2
WP_024709830.1\|1503254_1503896_-	hypothetical protein	A0A248SKU9	Klebsiella_phage	7.4e-31	58.3
WP_024709831.1\|1504093_1504546_-	hypothetical protein	A0A248SL88	Klebsiella_phage	9.5e-41	58.4
WP_036238223.1\|1504622_1505726_-\|capsid	N4-gp56 family major capsid protein	H2DE40	Erwinia_phage	8.8e-165	77.1
WP_024709832.1\|1505920_1506526_-	hypothetical protein	NA	NA	NA	NA
WP_152534636.1\|1506607_1506781_-	carbon storage regulator	NA	NA	NA	NA
WP_036238237.1\|1506804_1507746_-	hypothetical protein	H2DE38	Erwinia_phage	2.2e-39	45.2
WP_051424165.1\|1507768_1510138_-	hypothetical protein	H2DE37	Erwinia_phage	2.7e-264	65.1
WP_024709835.1\|1510130_1510562_-	hypothetical protein	A0A248SL50	Klebsiella_phage	4.2e-46	55.9

DBSCAN-SWA_5

1518848 : 1526684

Klebsiella_phage(22.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_051424169.1\|1518848_1519157_+	hypothetical protein	A0A248SL54	Klebsiella_phage	1.0e-25	57.8
WP_152534637.1\|1519442_1520498_+	hypothetical protein	I6NW17	Burkholderia_virus	3.0e-29	66.7
WP_024709843.1\|1520487_1521126_+	hypothetical protein	A0A248SL55	Klebsiella_phage	2.4e-37	55.3
WP_024709844.1\|1521386_1521668_+	DUF2312 domain-containing protein	A0A0F6R615	Sinorhizobium_phage	1.0e-29	77.6
WP_061449656.1\|1521667_1522072_+	hypothetical protein	NA	NA	NA	NA
WP_024709846.1\|1522068_1523208_+	DNA polymerase III subunit beta	R9TRR6	Rhizobium_phage	1.4e-45	36.3
WP_081725884.1\|1523200_1523440_+	hypothetical protein	NA	NA	NA	NA
WP_024709848.1\|1523436_1524636_+	site-specific DNA-methyltransferase	M4R1Z8	Salicola_phage	8.3e-60	41.6
WP_024709849.1\|1524625_1525135_+	single-stranded DNA-binding protein	R9TP78	Rhizobium_phage	8.1e-49	60.0
WP_024709850.1\|1525148_1525961_+	hypothetical protein	A0A2I7REB9	Vibrio_phage	2.0e-12	39.0
WP_156484724.1\|1525957_1526116_+	hypothetical protein	NA	NA	NA	NA
WP_081725885.1\|1526294_1526684_+	helix-turn-helix transcriptional regulator	A0A223W054	Agrobacterium_phage	4.4e-10	57.6

DBSCAN-SWA_6

1638327 : 1723504

Sinorhizobium_phage(40.0%)

transposase,capsid,tail,head,integrase,terminase,portal,tRNA

attL 1655021:1655038|attR 1694154:1694171

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152534473.1\|1638327_1639332_-\|integrase	tyrosine-type recombinase/integrase	I6NSG1	Burkholderia_phage	1.7e-111	59.6
WP_152534471.1\|1640233_1643374_+	hypothetical protein	NA	NA	NA	NA
WP_024707195.1\|1643364_1643805_+	hypothetical protein	NA	NA	NA	NA
WP_024706304.1\|1644193_1645720_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_024706303.1\|1645709_1646510_+	AAA family ATPase	A0A059NT77	Lactococcus_phage	8.1e-35	35.1
WP_024708357.1\|1646616_1646907_-	Pyocin activator protein PrtN	NA	NA	NA	NA
WP_152534544.1\|1646903_1647455_-	hypothetical protein	A0A291AUJ2	Sinorhizobium_phage	1.4e-17	54.4
WP_152534543.1\|1647461_1647722_-	hypothetical protein	NA	NA	NA	NA
WP_036237190.1\|1648545_1648740_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_152534542.1\|1649095_1649410_+	hypothetical protein	A0A291AUS4	Sinorhizobium_phage	5.8e-05	38.1
WP_152534541.1\|1649563_1649980_+	hypothetical protein	K4JV62	Caulobacter_virus	1.8e-06	35.2
WP_081725786.1\|1650073_1651117_+	YdaU family protein	A0A076GD06	Sinorhizobium_phage	4.4e-25	36.4
WP_024708349.1\|1651100_1651547_+	hypothetical protein	NA	NA	NA	NA
WP_024708348.1\|1651539_1652271_+	hypothetical protein	NA	NA	NA	NA
WP_081725785.1\|1652168_1652903_+	hypothetical protein	A0A068C9G5	Rhizobium_phage	1.2e-08	29.8
WP_024708346.1\|1653199_1653940_+	hypothetical protein	A0A291AUL1	Sinorhizobium_phage	6.1e-61	53.7
WP_024709062.1\|1654087_1654750_+	hypothetical protein	A0A291AUL0	Sinorhizobium_phage	2.1e-36	44.7
WP_024709061.1\|1654746_1656813_+\|terminase	terminase	A0A291AUK9	Sinorhizobium_phage	6.4e-294	69.0
1655021:1655038	attL	NA	NA	NA	NA
WP_152534578.1\|1656829_1657063_+\|tail	phage tail protein	NA	NA	NA	NA
WP_024709059.1\|1657059_1658820_+\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	3.5e-248	72.7
WP_081725828.1\|1658843_1659701_+	S49 family peptidase	A0A291AUM2	Sinorhizobium_phage	5.3e-109	71.5
WP_024709057.1\|1659727_1660273_+	hypothetical protein	NA	NA	NA	NA
WP_024709056.1\|1660277_1660634_+\|head	head decoration protein	A0A291AUM0	Sinorhizobium_phage	2.2e-32	63.2
WP_024709055.1\|1660674_1661706_+\|capsid	major capsid protein	A0A291AUL7	Sinorhizobium_phage	2.3e-151	74.8
WP_024709054.1\|1661764_1662193_+	hypothetical protein	NA	NA	NA	NA
WP_024709053.1\|1662189_1662525_+	hypothetical protein	NA	NA	NA	NA
WP_024709052.1\|1662524_1662989_+	hypothetical protein	A0A291AUM4	Sinorhizobium_phage	1.1e-39	51.0
WP_152534577.1\|1663001_1663253_+	hypothetical protein	NA	NA	NA	NA
WP_024709050.1\|1663281_1663698_+	hypothetical protein	A0A291AUM5	Sinorhizobium_phage	2.6e-29	50.4
WP_152534579.1\|1663975_1664332_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_024709047.1\|1664328_1666251_+	hypothetical protein	A0A291AUM6	Sinorhizobium_phage	1.4e-56	33.1
WP_024709046.1\|1666250_1666598_+	hypothetical protein	A0A1B1IV54	uncultured_Mediterranean_phage	1.6e-11	36.8
WP_024709045.1\|1666594_1666963_+	hypothetical protein	NA	NA	NA	NA
WP_024709044.1\|1666959_1667715_+\|tail	phage minor tail protein L	L7TNY8	Rhizobium_phage	4.0e-52	44.1
WP_024709043.1\|1667728_1668424_+	hypothetical protein	L7TLZ5	Rhizobium_phage	1.2e-39	37.3
WP_024709042.1\|1668411_1668672_-	HicB family protein	A0A0D4DCG1	Acinetobacter_phage	4.8e-05	42.6
WP_081725826.1\|1668668_1669022_-	DUF2442 domain-containing protein	NA	NA	NA	NA
WP_024709040.1\|1669071_1669368_-	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_024709039.1\|1669385_1669667_-	Killer protein	NA	NA	NA	NA
WP_024709038.1\|1669759_1670356_+\|tail	tail assembly protein	L7TS77	Rhizobium_phage	4.3e-25	39.7
WP_061449659.1\|1670374_1673572_+	host specificity protein J	W6E8G0	Rhizobium_phage	2.3e-165	41.8
WP_024708615.1\|1673568_1674423_+	hypothetical protein	W6EKG4	Rhizobium_phage	1.7e-11	47.1
WP_024708616.1\|1674422_1675067_+	DUF4376 domain-containing protein	A0A2L0V114	Agrobacterium_phage	1.3e-38	68.7
WP_024708617.1\|1675071_1675338_+	hypothetical protein	NA	NA	NA	NA
WP_024708618.1\|1675341_1676466_+	hypothetical protein	G8GWG3	Rhodobacter_phage	2.9e-14	30.3
WP_024708619.1\|1676458_1676815_+	hypothetical protein	NA	NA	NA	NA
WP_024708620.1\|1676854_1677214_-	hypothetical protein	NA	NA	NA	NA
WP_024708621.1\|1677336_1678281_+	peptidoglycan-binding protein	NA	NA	NA	NA
WP_024708622.1\|1678280_1678700_+	hypothetical protein	A0A1X9HVL7	Ruegeria_phage	7.0e-30	47.4
WP_024708623.1\|1678712_1679036_+	hypothetical protein	NA	NA	NA	NA
WP_152534554.1\|1679154_1680177_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.2e-21	34.0
WP_152534477.1\|1680281_1681633_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_156484726.1\|1681891_1682038_+	hypothetical protein	NA	NA	NA	NA
WP_024708114.1\|1682791_1683616_+	DNA methyltransferase	A0A291AUP9	Sinorhizobium_phage	1.1e-116	78.8
WP_024708115.1\|1683644_1684718_-\|integrase	site-specific integrase	I6NSG1	Burkholderia_phage	5.6e-116	55.8
WP_051424059.1\|1684813_1685833_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_024708117.1\|1686226_1688881_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	2.0e-74	35.2
WP_024708118.1\|1689044_1690127_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	3.7e-115	64.1
WP_024708119.1\|1690285_1691941_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	8.6e-39	27.9
WP_024708120.1\|1692107_1692962_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_024708121.1\|1692968_1693826_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_024708122.1\|1694098_1695031_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
1694154:1694171	attR	NA	NA	NA	NA
WP_024708123.1\|1695094_1696618_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_024708124.1\|1696651_1697611_+	ABC transporter permease	NA	NA	NA	NA
WP_024708125.1\|1697610_1698450_+	ABC transporter permease	NA	NA	NA	NA
WP_024708126.1\|1698446_1700195_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.0e-18	35.3
WP_024708127.1\|1700194_1701208_+	serine hydrolase	NA	NA	NA	NA
WP_024708128.1\|1701207_1702335_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_024708129.1\|1702406_1702820_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_152534525.1\|1703202_1703874_-	hypothetical protein	NA	NA	NA	NA
WP_024708131.1\|1703920_1705855_-	mechanosensitive ion channel	NA	NA	NA	NA
WP_024708132.1\|1706061_1706499_-	DedA family protein	NA	NA	NA	NA
WP_082781118.1\|1707304_1714018_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_024707977.1\|1714103_1714892_+	HXXEE domain-containing protein	NA	NA	NA	NA
WP_152534515.1\|1714896_1717422_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_024707975.1\|1717753_1718494_+	hypothetical protein	NA	NA	NA	NA
WP_024707974.1\|1718804_1719473_+	protein-L-isoaspartate O-methyltransferase	NA	NA	NA	NA
WP_024707973.1\|1719625_1720375_+	DUF2497 domain-containing protein	NA	NA	NA	NA
WP_024707972.1\|1720591_1723504_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	7.3e-134	37.6

DBSCAN-SWA_7

2097653 : 2106989

uncultured_Mediterranean_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024707855.1\|2097653_2098154_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.3e-35	51.2
WP_024707854.1\|2098277_2098856_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	8.1e-45	57.3
WP_024707853.1\|2098893_2099388_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	1.5e-26	38.9
WP_024707852.1\|2099519_2102318_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	4.9e-103	33.5
WP_024707851.1\|2102551_2103196_+	MarC family protein	NA	NA	NA	NA
WP_024707850.1\|2103304_2103820_-	single-stranded DNA-binding protein	R9TP78	Rhizobium_phage	1.1e-45	74.6
WP_024707849.1\|2104067_2106989_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	61.2

DBSCAN-SWA_8

2179759 : 2188009

Bacillus_phage(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018066007.1\|2179759_2180035_-	HU family DNA-binding protein	A7KV42	Bacillus_phage	7.6e-17	55.7
WP_024709590.1\|2180245_2182663_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.5e-193	48.1
WP_024709589.1\|2182904_2184182_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	7.1e-134	58.6
WP_024709588.1\|2184528_2185155_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	4.2e-63	59.7
WP_081725863.1\|2185364_2186630_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	2.8e-13	33.3
WP_024709586.1\|2186725_2188009_-	O-acetylhomoserine aminocarboxypropyltransferase	A0A0B5JD48	Pandoravirus	8.7e-15	27.5

DBSCAN-SWA_9

2325739 : 2390618

Sinorhizobium_phage(40.0%)

transposase,capsid,head,tail,integrase,portal,terminase

attL 2346030:2346077|attR 2392608:2392655

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061449609.1\|2325739_2326936_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.8e-94	46.1
WP_152534610.1\|2327160_2327541_+	hypothetical protein	NA	NA	NA	NA
WP_152534611.1\|2327537_2328131_+	hypothetical protein	A0A068C9C1	Rhizobium_phage	6.4e-13	34.6
WP_036238014.1\|2328172_2328418_+	hypothetical protein	NA	NA	NA	NA
WP_024709484.1\|2328392_2329574_+	hypothetical protein	F8TUV0	EBPR_podovirus	2.0e-18	26.4
WP_024709485.1\|2329874_2330789_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA
WP_036238006.1\|2330825_2331572_-	hypothetical protein	NA	NA	NA	NA
WP_024709488.1\|2331691_2332918_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_081725859.1\|2333437_2334061_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_024709490.1\|2334099_2334585_+	cupin domain-containing protein	NA	NA	NA	NA
WP_024709491.1\|2334581_2334965_+	hypothetical protein	NA	NA	NA	NA
WP_024709492.1\|2335030_2336050_-	ketol-acid reductoisomerase	NA	NA	NA	NA
WP_024709493.1\|2336105_2336729_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_024709494.1\|2337378_2337870_-	hypothetical protein	NA	NA	NA	NA
WP_024709495.1\|2337896_2338751_-	ABC transporter permease	NA	NA	NA	NA
WP_024709496.1\|2338747_2339680_-	ABC transporter permease	NA	NA	NA	NA
WP_024709497.1\|2339676_2341335_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.4e-17	32.5
WP_051424137.1\|2341344_2342904_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_024709499.1\|2343016_2343898_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_024709500.1\|2344038_2344995_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_152534612.1\|2345345_2345546_+	hypothetical protein	NA	NA	NA	NA
WP_024709502.1\|2345542_2345896_+	glyoxalase	NA	NA	NA	NA
2346030:2346077	attL	NA	NA	NA	NA
WP_024709503.1\|2346498_2347542_+	methionine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.4e-24	31.3
WP_024709504.1\|2347531_2348200_+	ABC transporter permease	NA	NA	NA	NA
WP_024709505.1\|2348386_2349175_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_024708623.1\|2350004_2350328_-	hypothetical protein	NA	NA	NA	NA
WP_024709506.1\|2350340_2350760_-	hypothetical protein	A0A1X9HVL7	Ruegeria_phage	7.0e-30	46.7
WP_024709507.1\|2350759_2351704_-	peptidoglycan-binding protein	NA	NA	NA	NA
WP_024709508.1\|2351765_2352122_-	hypothetical protein	NA	NA	NA	NA
WP_024709509.1\|2352118_2353234_-	hypothetical protein	G8GWG3	Rhodobacter_phage	4.0e-16	32.5
WP_024709510.1\|2353223_2353583_-	hypothetical protein	NA	NA	NA	NA
WP_024709511.1\|2353587_2354235_-	DUF4376 domain-containing protein	A0A2L0V114	Agrobacterium_phage	5.2e-40	68.7
WP_061449676.1\|2354234_2355092_-	hypothetical protein	W6EKG4	Rhizobium_phage	3.9e-11	45.9
WP_051424145.1\|2355088_2358286_-	host specificity protein J	W6E8G0	Rhizobium_phage	6.5e-168	42.2
WP_024709686.1\|2358304_2358901_-\|tail	tail assembly protein	L7TS77	Rhizobium_phage	1.1e-23	41.3
WP_024709685.1\|2358992_2359175_+	addiction module toxin, HicA family	A0A0R6PJD4	Moraxella_phage	4.5e-10	57.9
WP_024709684.1\|2359190_2359583_+	CopG family transcriptional regulator	A0A0R6PJ17	Moraxella_phage	3.7e-09	33.6
WP_024709683.1\|2359798_2360095_+	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_152534623.1\|2360144_2360324_+	hypothetical protein	NA	NA	NA	NA
WP_156484729.1\|2361350_2361497_+	hypothetical protein	NA	NA	NA	NA
WP_024709680.1\|2361474_2362191_-	hypothetical protein	L7TLZ5	Rhizobium_phage	1.1e-40	36.9
WP_024709679.1\|2362204_2362960_-\|tail	phage minor tail protein L	L7TNY8	Rhizobium_phage	4.0e-52	44.1
WP_024709678.1\|2362956_2363325_-	hypothetical protein	NA	NA	NA	NA
WP_024709677.1\|2363321_2363669_-	hypothetical protein	A0A1B1IV54	uncultured_Mediterranean_phage	3.5e-11	36.8
WP_024709676.1\|2363668_2365591_-	hypothetical protein	A0A291AUM6	Sinorhizobium_phage	2.9e-54	36.3
WP_152534624.1\|2365587_2365944_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_024709673.1\|2366221_2366638_-	hypothetical protein	A0A291AUM5	Sinorhizobium_phage	6.9e-30	51.8
WP_024709672.1\|2366666_2366918_-	hypothetical protein	NA	NA	NA	NA
WP_024709671.1\|2367053_2367863_+	hypothetical protein	NA	NA	NA	NA
WP_024709670.1\|2367893_2368358_-	hypothetical protein	A0A291AUM4	Sinorhizobium_phage	3.5e-38	49.7
WP_036238117.1\|2368357_2368693_-	hypothetical protein	A0A291AUL9	Sinorhizobium_phage	1.3e-23	57.9
WP_024709668.1\|2368689_2369118_-	hypothetical protein	NA	NA	NA	NA
WP_024709667.1\|2369176_2370208_-\|capsid	phage capsid protein	A0A291AUL7	Sinorhizobium_phage	4.0e-151	74.5
WP_024709666.1\|2370249_2370606_-\|head	head decoration protein	A0A291AUM0	Sinorhizobium_phage	7.5e-33	64.1
WP_024709665.1\|2370611_2371157_-	hypothetical protein	NA	NA	NA	NA
WP_081725871.1\|2371182_2372040_-	S49 family peptidase	A0A291AUM2	Sinorhizobium_phage	2.2e-110	71.8
WP_024709663.1\|2372063_2373839_-\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	7.3e-246	71.6
WP_152534622.1\|2373835_2374069_-\|tail	phage tail protein	NA	NA	NA	NA
WP_024709661.1\|2374087_2376163_-\|terminase	terminase	A0A291AUK9	Sinorhizobium_phage	1.9e-293	68.9
WP_024709660.1\|2376159_2376822_-	hypothetical protein	A0A291AUL0	Sinorhizobium_phage	9.3e-37	44.5
WP_061449872.1\|2377039_2378158_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_024706384.1\|2378516_2379257_-	hypothetical protein	A0A291AUL1	Sinorhizobium_phage	6.1e-61	53.3
WP_024706383.1\|2379555_2380191_-	hypothetical protein	A0A068C9G5	Rhizobium_phage	4.6e-09	30.2
WP_024706382.1\|2380187_2380919_-	hypothetical protein	NA	NA	NA	NA
WP_024706381.1\|2380911_2381358_-	hypothetical protein	NA	NA	NA	NA
WP_024706380.1\|2381341_2382175_-	YdaU family protein	A0A076GD06	Sinorhizobium_phage	3.8e-27	45.2
WP_024706379.1\|2382264_2382510_+	cytotoxic translational repressor of toxin-antitoxin stability system	NA	NA	NA	NA
WP_024706378.1\|2382516_2382867_+	helix-turn-helix transcriptional regulator	Q8W6N2	Burkholderia_virus	1.7e-05	30.1
WP_152534428.1\|2382938_2383220_-	hypothetical protein	NA	NA	NA	NA
WP_152534427.1\|2383216_2383786_-	hypothetical protein	K4JV62	Caulobacter_virus	1.2e-05	32.5
WP_024706375.1\|2383787_2384270_-	hypothetical protein	A0A291AUS4	Sinorhizobium_phage	7.8e-09	33.1
WP_024706373.1\|2384776_2385397_+	hypothetical protein	NA	NA	NA	NA
WP_024706372.1\|2385880_2386423_+	hypothetical protein	A0A291AUJ2	Sinorhizobium_phage	2.7e-18	54.4
WP_152534426.1\|2386425_2386668_+	hypothetical protein	NA	NA	NA	NA
WP_024706371.1\|2386645_2387716_+\|integrase	tyrosine-type recombinase/integrase	A0A141GEZ3	Brucella_phage	1.6e-54	35.0
WP_081725655.1\|2387780_2389238_-	ATP-binding protein	NA	NA	NA	NA
WP_152534486.1\|2389390_2390618_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	2.5e-104	66.5
2392608:2392655	attR	NA	NA	NA	NA

DBSCAN-SWA_10

2610492 : 2621694

Paracoccus_phage(28.57%)

head,protease,capsid,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024706490.1\|2610492_2614341_-	hypothetical protein	A0A0K1Y6G6	Rhodobacter_phage	8.5e-207	38.6
WP_024706491.1\|2614554_2614989_-	peptidase P60	A0A1V0DYB6	Dinoroseobacter_phage	5.5e-30	46.3
WP_024706492.1\|2614985_2615876_-	DUF2163 domain-containing protein	A0A0B5A5B8	Paracoccus_phage	4.0e-51	38.3
WP_024706493.1\|2615872_2616514_-	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	1.3e-48	48.3
WP_024706494.1\|2616729_2617314_-\|tail	phage tail tape measure protein	A5LH38	Enterobacteria_phage	1.6e-11	38.7
WP_081725665.1\|2617313_2617484_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_024706495.1\|2617540_2617921_-	gene transfer agent family protein	NA	NA	NA	NA
WP_024706496.1\|2617917_2618328_-\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_024706497.1\|2618362_2618770_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_036235844.1\|2618766_2619096_-\|head	phage head closure protein	NA	NA	NA	NA
WP_024706499.1\|2619095_2619662_-	hypothetical protein	NA	NA	NA	NA
WP_036235849.1\|2619737_2620967_-\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	2.2e-79	42.2
WP_024706501.1\|2621007_2621694_-\|head,protease	HK97 family phage prohead protease	A0A0R6PKF0	Moraxella_phage	6.1e-31	44.1

DBSCAN-SWA_11

3936426 : 3989531

Lactococcus_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_156484717.1\|3936426_3937777_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_024708725.1\|3938702_3939359_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_024708723.1\|3940236_3942777_-	helicase	NA	NA	NA	NA
WP_024708722.1\|3942776_3944579_-	hypothetical protein	NA	NA	NA	NA
WP_036237462.1\|3944590_3945793_-	hypothetical protein	NA	NA	NA	NA
WP_061449813.1\|3945792_3948999_-	AAA family ATPase	A0A172PZX3	Pseudomonas_phage	6.4e-06	33.9
WP_051424041.1\|3948995_3951503_-	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA
WP_024707691.1\|3951606_3951996_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_024707692.1\|3951992_3952346_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_036236820.1\|3953449_3954220_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	1.8e-31	35.0
WP_024707693.1\|3954209_3955745_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_024707382.1\|3957434_3958931_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_024707381.1\|3958927_3959686_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	2.5e-41	40.1
WP_024706843.1\|3960325_3961777_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_024706842.1\|3961901_3962735_-	3-(cis-5,6-dihydroxycyclohexa-1, 3-dien-1-yl)propanoate dehydrogenase	NA	NA	NA	NA
WP_024706841.1\|3962766_3963072_-	non-heme iron oxygenase ferredoxin subunit	NA	NA	NA	NA
WP_024706840.1\|3963082_3963640_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA
WP_036236102.1\|3963724_3965089_-	aromatic ring-hydroxylating dioxygenase subunit alpha	S4S2K9	Puniceispirillum_phage	3.9e-05	39.0
WP_024706838.1\|3965270_3966242_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA
WP_024706837.1\|3966326_3968267_+	TRAP transporter fused permease subunit	NA	NA	NA	NA
WP_024706836.1\|3968326_3969037_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_024706835.1\|3969033_3969681_+	maleylacetoacetate isomerase	NA	NA	NA	NA
WP_024706834.1\|3969747_3970992_+	CoA transferase	NA	NA	NA	NA
WP_024706833.1\|3970988_3971945_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA
WP_024706832.1\|3971973_3973218_+	cytochrome P450	NA	NA	NA	NA
WP_024706831.1\|3973311_3974169_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_081725685.1\|3974229_3974622_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_024706829.1\|3974942_3975257_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_081725684.1\|3975911_3976307_-\|transposase	transposase	NA	NA	NA	NA
WP_024706827.1\|3976303_3978667_-	transketolase	NA	NA	NA	NA
WP_024706826.1\|3978795_3979260_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_024706825.1\|3980107_3981172_+	gentisate 1,2-dioxygenase	NA	NA	NA	NA
WP_024706824.1\|3981249_3982245_+	aldolase	NA	NA	NA	NA
WP_024706823.1\|3982241_3982838_+	2-hydroxychromene-2-carboxylate isomerase	NA	NA	NA	NA
WP_024706822.1\|3982871_3983777_+	catechol 1,2-dioxygenase	NA	NA	NA	NA
WP_024706821.1\|3983877_3985083_+	pyridine nucleotide-disulfide oxidoreductase	NA	NA	NA	NA
WP_081725682.1\|3985159_3985822_+	OmpW family protein	NA	NA	NA	NA
WP_024706819.1\|3985890_3986490_+	glutathione S-transferase	NA	NA	NA	NA
WP_024706818.1\|3987034_3988288_+	glycosyltransferase	NA	NA	NA	NA
WP_152534486.1\|3988303_3989531_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	2.5e-104	66.5

DBSCAN-SWA_12

4250452 : 4283782

Planktothrix_phage(40.0%)

holin,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024709114.1\|4250452_4250890_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_024709115.1\|4250893_4251544_+	alpha-ketoglutarate-dependent dioxygenase AlkB	NA	NA	NA	NA
WP_024709116.1\|4251695_4252694_-	type I pantothenate kinase	NA	NA	NA	NA
WP_024709117.1\|4252690_4253014_-	phosphoribosyl-ATP diphosphatase	NA	NA	NA	NA
WP_024709118.1\|4253030_4253813_-	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_024709119.1\|4253809_4254544_-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_024709120.1\|4254582_4255233_-	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_024709121.1\|4255244_4255697_-	DUF2628 domain-containing protein	NA	NA	NA	NA
WP_024709122.1\|4255707_4256316_-	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_024709123.1\|4256549_4257044_+	hypothetical protein	NA	NA	NA	NA
WP_024709124.1\|4257040_4257481_+	DMT family transporter	NA	NA	NA	NA
WP_024709125.1\|4257580_4258138_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_024709126.1\|4258127_4258628_+	acetyltransferase	NA	NA	NA	NA
WP_024709127.1\|4258641_4259949_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A2H5BJT2	Erwinia_phage	5.9e-43	32.2
WP_152534584.1\|4260146_4260890_-	DUF2778 domain-containing protein	NA	NA	NA	NA
WP_024709129.1\|4261826_4263653_+	SLC13 family permease	NA	NA	NA	NA
WP_061449827.1\|4263723_4264287_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_024706705.1\|4264336_4264861_+	dihydrofolate reductase	NA	NA	NA	NA
WP_051423985.1\|4264941_4265295_-	DUF2147 domain-containing protein	NA	NA	NA	NA
WP_024706707.1\|4265371_4266229_-	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA
WP_024706708.1\|4266230_4267751_-	L-aspartate oxidase	NA	NA	NA	NA
WP_024706709.1\|4267747_4268719_-	quinolinate synthase NadA	NA	NA	NA	NA
WP_061449828.1\|4268874_4269777_-	hypothetical protein	NA	NA	NA	NA
WP_152534626.1\|4269844_4270405_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_024709707.1\|4270812_4272408_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_024709708.1\|4272476_4273484_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_024709709.1\|4273494_4274403_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_024709710.1\|4274407_4275253_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.6e-19	30.0
WP_024709711.1\|4275249_4276095_+	dipeptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.0e-20	33.2
WP_024709712.1\|4276161_4277826_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	5.7e-59	30.9
WP_036238159.1\|4278050_4279508_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_024709714.1\|4279557_4281075_-\|holin	choline-sulfatase	A0A1V0SA98	Catovirus	1.7e-17	25.0
WP_152534627.1\|4281071_4281647_-	transcriptional regulator BetI	NA	NA	NA	NA
WP_024709716.1\|4281855_4282794_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_024709717.1\|4282939_4283782_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA

DBSCAN-SWA_13

4499068 : 4507937

Mycobacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024706755.1\|4499068_4500994_+	molecular chaperone DnaK	A0A0N9QXN8	Chrysochromulina_ericina_virus	7.1e-154	53.6
WP_024706754.1\|4501085_4502228_+	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	5.5e-29	28.3
WP_024706753.1\|4502519_4503644_+	DNA replication/repair protein RecF	NA	NA	NA	NA
WP_036236057.1\|4503652_4503856_-	hypothetical protein	NA	NA	NA	NA
WP_024706751.1\|4503988_4504966_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	4.4e-136	71.6
WP_036236053.1\|4504983_4507149_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	8.2e-215	53.5
WP_024706749.1\|4507193_4507595_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J6X7	uncultured_Caudovirales_phage	2.5e-16	45.7
WP_024706748.1\|4507715_4507937_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	5.5e-18	58.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP014275

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection