CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011009	Peribacillus simplex strain SH-B26 plasmid pSHB26, complete sequence	0 crisprs	RT	0	0	1	0
NZ_CP011008	Peribacillus simplex strain SH-B26 chromosome, complete genome	4 crisprs	csa3,DinG,RT,WYL,DEDDh,cas3	0	2	3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

20368 : 78592

Bacillus_phage(25.0%)

transposase,integrase

attL 47899:47913|attR 78766:78780

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_155727552.1\|20368_21699_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	6.0e-27	33.8
WP_061466358.1\|22284_22803_+	hypothetical protein	NA	NA	NA	NA
WP_061466359.1\|23084_23606_+	hypothetical protein	NA	NA	NA	NA
WP_061466360.1\|23819_24161_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_061466361.1\|24157_24880_+	hypothetical protein	NA	NA	NA	NA
WP_061466362.1\|25158_25539_+	hypothetical protein	NA	NA	NA	NA
WP_061466363.1\|25852_26125_+	hypothetical protein	NA	NA	NA	NA
WP_155727553.1\|26250_26397_+	hypothetical protein	NA	NA	NA	NA
WP_061466364.1\|27285_28560_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_061466365.1\|29089_29539_+	hypothetical protein	NA	NA	NA	NA
WP_061466366.1\|29699_30143_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_061466367.1\|30117_31026_-	DMT family transporter	NA	NA	NA	NA
WP_061466368.1\|31167_32577_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_061466369.1\|33181_34456_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_061466370.1\|34648_35464_+	lipid II flippase Amj family protein	NA	NA	NA	NA
WP_061466371.1\|35624_36443_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_061466372.1\|36505_37189_+	DUF554 domain-containing protein	NA	NA	NA	NA
WP_061466374.1\|38267_40427_+	S8 family serine peptidase	A0A1B0T6A2	Bacillus_phage	1.4e-44	34.1
WP_061466375.1\|41222_41675_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_061466376.1\|41786_42659_+	AraC family transcriptional regulator	D0R0F8	Streptococcus_phage	5.2e-35	34.2
WP_061466377.1\|43102_43282_+	hypothetical protein	NA	NA	NA	NA
WP_061466378.1\|43739_44147_+	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_061466379.1\|44136_44541_+	DUF86 domain-containing protein	NA	NA	NA	NA
WP_155727554.1\|44557_44719_+	hypothetical protein	NA	NA	NA	NA
WP_061466380.1\|44852_45980_+	tyrosine recombinase XerS	S5M9V8	Brevibacillus_phage	5.5e-05	29.6
WP_061466381.1\|46275_47052_-	hypothetical protein	NA	NA	NA	NA
WP_061466382.1\|47585_48173_+	excalibur calcium-binding domain-containing protein	A0A1P8CWK6	Bacillus_phage	1.5e-09	71.8
47899:47913	attL	NA	NA	NA	NA
WP_155727555.1\|49041_49188_-	hypothetical protein	NA	NA	NA	NA
WP_061466383.1\|49362_50001_-	hypothetical protein	NA	NA	NA	NA
WP_081109047.1\|50110_50359_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A0K2CZ86	Paenibacillus_phage	2.1e-18	53.8
WP_061466384.1\|50473_50725_-	hypothetical protein	NA	NA	NA	NA
WP_061466385.1\|50726_51098_-	hypothetical protein	NA	NA	NA	NA
WP_155727556.1\|52149_52314_-	hypothetical protein	NA	NA	NA	NA
WP_061466388.1\|52577_53804_-	hypothetical protein	NA	NA	NA	NA
WP_061466389.1\|53803_56008_-	AAA family ATPase	K4I1H4	Acidithiobacillus_phage	1.1e-41	38.0
WP_061466390.1\|57004_57805_-	hypothetical protein	NA	NA	NA	NA
WP_061466391.1\|58853_59981_-	DUF4935 domain-containing protein	NA	NA	NA	NA
WP_061466392.1\|60419_60734_-	helix-turn-helix transcriptional regulator	A8ATJ9	Listeria_phage	1.5e-05	32.3
WP_061466393.1\|60826_61612_-	hypothetical protein	NA	NA	NA	NA
WP_061466394.1\|61601_62306_-	hypothetical protein	NA	NA	NA	NA
WP_155727557.1\|62432_63563_+	DNA (cytosine-5-)-methyltransferase	M1PSQ0	Streptococcus_phage	1.6e-52	37.4
WP_061466395.1\|63581_64889_+	DNA cytosine methyltransferase	A0A0R6PG08	Moraxella_phage	1.6e-16	24.3
WP_081109048.1\|64943_65198_+	HAD hydrolase family protein	NA	NA	NA	NA
WP_155727561.1\|65873_66281_-	HNH endonuclease	NA	NA	NA	NA
WP_061466398.1\|66870_67092_-	hypothetical protein	NA	NA	NA	NA
WP_061466399.1\|67153_68068_-	DUF91 domain-containing protein	NA	NA	NA	NA
WP_061466400.1\|68245_68575_+	hypothetical protein	NA	NA	NA	NA
WP_061466401.1\|69400_70735_-	RES domain-containing protein	NA	NA	NA	NA
WP_061466402.1\|70876_71284_-	hypothetical protein	NA	NA	NA	NA
WP_061466403.1\|71290_71953_-	hypothetical protein	NA	NA	NA	NA
WP_081109060.1\|72235_72463_-	YolD-like family protein	NA	NA	NA	NA
WP_061466404.1\|72620_72989_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_061466405.1\|73190_74426_-\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	2.9e-47	32.4
WP_061466406.1\|74775_75036_-	hypothetical protein	NA	NA	NA	NA
WP_155727562.1\|75836_77039_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_061466407.1\|77446_78592_+\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJJ6	Virus_Rctr41k	1.9e-05	28.2
78766:78780	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP011008

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011008_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011008_1

319133-319230

Orphan

Consensus_repeat	Method
AAGCATAAACAACAAGAGGAAAAGAAACACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011008_1

>merge|NZ_CP011008|1|319133-319230|CRISPRCasFinder
AAACATAAACAAGAGGAAGGAAAGCATAAACAACAAGAGGAAAAGAAACACAAACAAGAGGAAGAAAAGCATAAACACCAAGAGGAGAAACACAAACA

>NZ_CP011008|1|1|319133-319230|CRISPRCasFinder
AAACATAAACAAGAGGAAGGAAAGCATAAACA	ACAAGAGGAAAAGAAACACAAACAAGAGGAAGAA
AAGCATAAACACCAAGAGGAGAAACACAAACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011008.1\|WP_061461223.1\|323777_324038_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379171
NZ_CP011008.1\|WP_061461220.1\|321259_321769_+\|putative-metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|183954
NZ_CP011008.1\|WP_061461227.1\|328109_328496_+\|RidA-family-protein	unknown	unknown	gnl\|CDD\|129116
NZ_CP011008.1\|WP_061461221.1\|322455_322908_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011008.1\|WP_061461216.1\|316725_316965_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011008.1\|WP_061461207.1\|303574_304012_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319941
NZ_CP011008.1\|WP_061461205.1\|300632_301265_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP011008.1\|WP_061461206.1\|301669_303001_+\|peptide-MFS-transporter	unknown	unknown	gnl\|CDD\|340904
NZ_CP011008.1\|WP_061461219.1\|320505_321006_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP011008.1\|WP_061461224.1\|324480_325755_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376564
NZ_CP011008.1\|WP_061461226.1\|327275_327953_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225512
NZ_CP011008.1\|WP_061461211.1\|309264_310668_+\|decarboxylating-NADP(+)-dependent-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236453
NZ_CP011008.1\|WP_061461213.1\|311418_312126_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011008.1\|WP_081108667.1\|322136_322316_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011008.1\|WP_061461210.1\|307838_309185_+\|GntP-family-permease	unknown	unknown	gnl\|CDD\|129873
NZ_CP011008.1\|WP_061461209.1\|306275_307820_+\|gluconokinase	unknown	unknown	gnl\|CDD\|130381
NZ_CP011008.1\|WP_061461222.1\|323155_323764_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011008.1\|WP_061461218.1\|319701_320349_+\|type-A-chloramphenicol-O-acetyltransferase	unknown	unknown	gnl\|CDD\|366012
NZ_CP011008.1\|WP_061461215.1\|314856_315996_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP011008.1\|WP_061461208.1\|305551_306283_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715

Protein	Function_ID	Function_description	E-value
NZ_CP011008.1\|WP_061461223.1\|323777_324038_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|379171	pfam13411, MerR_1, MerR HTH family regulatory protein.	1.54892e-09
NZ_CP011008.1\|WP_061461227.1\|328109_328496_+\|RidA-family-protein	gnl\|CDD\|129116	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase. This protein was described initially as an inhibitor of protein synthesis intiation, then as an endoribonuclease active on single-stranded mRNA, endoribonuclease L-PSP. Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes. [Cellular processes, Other].	2.22719e-64
NZ_CP011008.1\|WP_061461224.1\|324480_325755_-\|IS110-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	7.12585e-29
NZ_CP011008.1\|WP_061461207.1\|303574_304012_+\|VOC-family-protein	gnl\|CDD\|319941	cd08353, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	4.89657e-78
NZ_CP011008.1\|WP_061461205.1\|300632_301265_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.00496e-31
NZ_CP011008.1\|WP_061461219.1\|320505_321006_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	7.16501e-14
NZ_CP011008.1\|WP_061461206.1\|301669_303001_+\|peptide-MFS-transporter	gnl\|CDD\|340904	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters. The DtpA-like subfamily includes four Escherichia coli proteins: dipeptide and tripeptide permeases A (DtpA, TppB or YdgR), B (DtpB or YhiP), C (DtpC or YjdL), and D (DtpD or YbgH). They are proton-dependent permeases that transport di- and tripeptides. DtpA and DtpB display a preference for di- and tripeptides composed of L-amino acids. DtpC shows higher specificity for dipeptides compared to tripeptides, and prefers dipeptides containing a C-terminal lysine residue. The DtpA-like subfamily belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.53046e-151
NZ_CP011008.1\|WP_061461226.1\|327275_327953_-\|PAS-domain-containing-protein	gnl\|CDD\|225512	COG2964, COG2964, Uncharacterized protein conserved in bacteria [Function unknown].	6.79126e-66
NZ_CP011008.1\|WP_061461211.1\|309264_310668_+\|decarboxylating-NADP(+)-dependent-phosphogluconate-dehydrogenase	gnl\|CDD\|236453	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase.	0
NZ_CP011008.1\|WP_061461210.1\|307838_309185_+\|GntP-family-permease	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP011008.1\|WP_061461209.1\|306275_307820_+\|gluconokinase	gnl\|CDD\|130381	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. [Energy metabolism, Sugars].	0
NZ_CP011008.1\|WP_061461208.1\|305551_306283_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	2.03235e-43
NZ_CP011008.1\|WP_061461218.1\|319701_320349_+\|type-A-chloramphenicol-O-acetyltransferase	gnl\|CDD\|366012	pfam00302, CAT, Chloramphenicol acetyltransferase.	1.27147e-82
NZ_CP011008.1\|WP_061461215.1\|314856_315996_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	8.10018e-101
NZ_CP011008.1\|WP_061461220.1\|321259_321769_+\|putative-metal-dependent-hydrolase	gnl\|CDD\|183954	PRK13291, PRK13291, putative metal-dependent hydrolase.	1.43371e-87

>NZ_CP011008.1|WP_061461216.1|316725_316965_+|hypothetical-protein
MKKFIVCYTLENDIKREKIIKGPDVKKEDVLQDVLDKIVRSNYFIAKTDQGEYRINSSLIRYIQVLHEMHCFKYHTDHQ
>NZ_CP011008.1|WP_061461215.1|314856_315996_-|rod-shape-determining-protein-RodA
MKNSKFDYNLVTLLLLLFITSCIAIHTAQEFGQYEGDFLFRQVTWYFIGCGMILGVMYLDSEQIFRLNWFFYSLSLFLLIALILSPESIAREINGAKSWFQIPGIGSLQPAEFTKISLIICLSYLIQKHHNKYEDKTLKTDFFLLIKMGAATLLPILLIMKQPDLGTSLVLMCIFIGILFVSGISWRIIGGIFIIGGSIVSGILYLVFLHPEILRLMGIKIFQLGRIYAWIDPESYKSGEGFNLIKALLAIGSGGVSGYKGSGVYVPEAHTDFIFSVIASKYGFLGSSILITIYFFLISGMVKLALDVKNSFESYLCVGVVSMIFFHIFENIGMNIGLLPITGIPLPFISYGGSSLMGNMLAIGLIFSISYRKRAFMFG
>NZ_CP011008.1|WP_061461213.1|311418_312126_+|hypothetical-protein
MRRDIQPNERAFSSKEVAEEVGIATPTVRKYGQILERNGYEFLKDGDRRIFVQSDIGVLIALRDTDKPLDDTAKDLVFQQKERLEGSNETEIAIPDTYENLPHDPNQLKEVLMFLVNELAATREMNVQLTSDMSEIKTKVSRLQQDHHVISSSIGNSAQRTNTKIEQLTEQQNIHYETLLQQEKQKSEILQKEIQNMRDEQKKDWSSQNEFNKRLEEAIQKRSEKWWGLFSIFRK
>NZ_CP011008.1|WP_061461211.1|309264_310668_+|decarboxylating-NADP(+)-dependent-phosphogluconate-dehydrogenase
MYNTIGVIGLGVMGSNIALNMASKGEKVAVYNYTRDLTDQLVAELDSQSLHPYYEIQDFVQSLETPRKIFLMVTAGKPIDSVINSLLPHLESGDIIMDGGNSHYEDTERRYDELKSKGISYLGIGISGGEVGALKGPSIMPGGDKDAYEKVAPILTKIAAQVNDDPCCTYIGPKGAGHFVKMVHNGIEYADMQLIAEAYTFLREKLHLEVNEIAGIFETWNQGELKSYLIEITAEILRKKDEVTGLPLIDVILDKAGQKGTGKWTSMQAIDNGIPASIITESLFARYISALKEERVNAEHILTGPENDQQKLDKNEWIDYIRQALYMGKVCAYAQGFTQYKMTSELYGWDLPLKDIALIFRGGCIIRAEFLNVISEAYQEQPNLANLLISPYFAEKVTDYQVGLREVVCEGINSGISFPCLSASLTYYDSYRKGISNANLLQAQRDYFGAHTYERRDLAGVFHTNWQ
>NZ_CP011008.1|WP_061461210.1|307838_309185_+|GntP-family-permease
MPLVIVALGIVALLILIMGLKLNTFISLIIVSFGVALALGMPLDGIVKTIEAGLGGTLGHLALIFGLGAMLGKLIADSGGAQRIAMTLVKKFGEKNIQWAVVAASFIIGIALFFEVGLVLLIPIVFAISRELKVSILYLGIPMVAALSVTHGFLPPHPGPTVIAGEYGADIGQVLLYGFIIAVPTVILAGPVFTKIAKRLVPDSFTKTGSIASLGEQKSFKLEDTPGFGISVFTALLPVILMSIATIITLMQKTMGFEDNGLLAAIRFIGEAGTSMLLSLLFAVYSMGLARKIPMKDIMESCTSAILHIGMMLLIIGGGGAFKQVLIDGGVGDYVAELFKGTSLSPILLAWIIAAILRISLGSATVAALTTAGLVIPMLGQTDVNLALVVLATGAGSLIASHVNDAGFWMFKEYFGLSMKETFATWTLLETIISVAGLGFILLLSLFV
>NZ_CP011008.1|WP_061461209.1|306275_307820_+|gluconokinase
MTSYMLGVDIGTTSTKAVLFTKKGDVIQQENIGYPLYTPDMTTAEQDPEEIFQAVLKAFSNITKQHSDKKLSFISFSSAMHSVIAMDENDQPLTPCITWADNRSEAWAHKIKAELDGHEVYKRTGTPIHPMSPLSKIAWIVNDRPEIATNVKKYIGIKEYIFKKFFDQYVVDYSLASSMGMMNLKNLDWDEEALRIAGITRGQLSELVPTTKIFNNCDPDLAKQIGIDPETSFVIGASDGVLSNLGVNAIRKGEIAVTIGTSGAIRTIIDEPKTDEKGRIFCYALTEKHWVIGGPVNNGGMVLRWIRDEFASSEVETAKRLGIDAYEVLTKIAERVRPGADGLLFHPYLAGERAPLWNPDVRGSFFGLTLSHKKEHMIRAALEGVIYNLYTVFLALTECMDGPVTRIQATGGFARSAVWRQMMSDIFESEVVVPESYESSCLGACILGLYATGEIESFEVVSEMIGNTHKHTPIADSVKEYRQLLPIFINLSRVLENEYTQVANYQRNLINAAK
>NZ_CP011008.1|WP_061461208.1|305551_306283_+|GntR-family-transcriptional-regulator
MVESKEFLYPVKWLSKASAGDRVTSELRMRIISGMIESGTILSENKLAADFGVSRSPIREALKILASENIIRLERMGAVVIGLTEKEYAEIYDVRLLIETFVFERLVRMDTNELVMELSKILEMMKISIKYRDADEFSNQDVIFHETIIRSINHSYILMIWDNLKSVMESLILLSMRSRFKEKYEDFTRIINNHQLYIDAIKTKDRNLMIKSLHKNFDDVQEKVEDLWMSQQMLSKGVEQEND
>NZ_CP011008.1|WP_061461207.1|303574_304012_+|VOC-family-protein
MKINRIDHVSINVNDLSEAKAFFLDLGLEVQAEWELDGEQLDRIVGLNDVKTACVGLGMPDGQAWIELVKFYTPSDEKDIQQPLANTLGIRHICFAVEDIEAIVAKLKKKGTEIFSEIQQYEESYKLCYVRGPEGIILELAEKIR
>NZ_CP011008.1|WP_061461206.1|301669_303001_+|peptide-MFS-transporter
MQALLKEEVQQPNPSRKKHPLGLYMLFATEAWERFSYYGMRAILVLYLTATVVNGGLGVDKSTAMGIYGFFTGAVYITPMIGGYLTDRFIGRRLAITIGGILMALGNFSLFASQSLTALYIGLGLLIIGNGFFKPNISTIVGDLYEDNDPRRDGAFTIFYMGINVGAFFAPLIVGLMSYKYGFLTAAIGMIVGQLVFNLLGNRYLGDIGKEPTGKPEVTAGQKSAAPLTKREQKRTAAIVILAVFVIAFWAAFEQAGSSLTLYANDQIDRTVFGFEVPTAWFQSLNPLFIVILAPIMSALWYKLGSSKRGDLKTPTKMALGLVTVGLGFLVLLPAVMYTGNDTALKVNILFMIVTYFLHTLAELMISPVGLSMVSKIAPIKLASLLMGVWLASSAVANMVAGQLAAYTQSLGYLEIFSVIGFVTIGLGIVLLLLSKPVAKLMK
>NZ_CP011008.1|WP_061461205.1|300632_301265_+|response-regulator
MNILVIDDDASIQYMLSEICEFAGWNVDTANNGKEGLNVFAEKGADVVLVDYHMPEMDGIKTVGELRTLNADVPILVLTVDERQEIADRFLEAGATDFALKPVKAPDLISRIQLHARLAKLTQSAPQQKFSEEKDVFVTKGISKRTLCHISDFLHSNREPFSVDTISKEVGLAYPTVYRYIMHLLDEGKVEIIVSYQKIGRPKNLYQWID
>NZ_CP011008.1|WP_061461218.1|319701_320349_+|type-A-chloramphenicol-O-acetyltransferase
MKFNIIDRENWYRKEYFEHYLQQQTTFSITNEINITVLMKNLKKKNYKLYPAFIFMVTNIVNSHREFKTSFNPEGNLGYWSEILPSYTIFDKKTYTFSSIWSPNVSRFSEFHSQYEKDVEEYNGTGSLFPKTPVPDNNIPISMIPWNSFTAFNLNINNGGDFLLPIITGGKYSQIKDEWFLPVSLQIHHAVCDGYHASVFMNDLQRFADESADWL
>NZ_CP011008.1|WP_061461219.1|320505_321006_+|GNAT-family-N-acetyltransferase
MLIREVKPEDAESFDWLMKQVETEADFMLMEPGERKGSPEQQRKWLERMDKENNSTVLVAEQEGGQLVGYLAVIGGDKRRTKHSSYLVIGILKEYTGRGIGTKLFQRLEEWAIIHNILRLELTVVTQNEAGVSLYKKMGFEVEGIKRNSLVIDGNLFDQYFMSKLS
>NZ_CP011008.1|WP_061461220.1|321259_321769_+|putative-metal-dependent-hydrolase
MDVRYPIGKLQVPEKVTLENFQEWLKEIETYTIRLRETVDSLSDEELSRTYREGSWTVRQLVHHIADSQLNMYQRLKLALTDENPTVPAFDEEKWAIQPDTKLPVESSIKMLEGINERIVSLGYSLTEEQLDRAFTHQINGIITVATKVAKLAWHEEHHLAQIKIALSK
>NZ_CP011008.1|WP_081108667.1|322136_322316_+|hypothetical-protein
MTLITLGFIIIGFVVLSYIKRNMDSKQSSTIQSIVWWIVGTTVFGGASIILIVWWFSKI
>NZ_CP011008.1|WP_061461221.1|322455_322908_+|hypothetical-protein
MIALPLLLIYIVYRIYKSKRPLTKFGHFYDKSFYLEEKKEYEKALDLRKQALELDTLTNLERAELNLANARMYLRLEQYKKATDYFDISFELAKEEKFPYSKGFDEVVEAYLQANRKKDAIELVNKMLERQSYDKKFKKLQSIKEKLKSV
>NZ_CP011008.1|WP_061461222.1|323155_323764_+|hypothetical-protein
MRDIVIGEEFITLSEGRKIRFSFIGRKRIIQMYAVGGMFFDLLINNLIAFDEKNKIIVTDESYNSNNEALKQLLILINSKQPMTFKRWMRYLSIPSKNRRDLYTKLLAKSDNSEAAQERIVQRIRAELLEPEQVTVEIITLSLLLKSSKLLNQYFSSYEVKQLENRIKELKQNDHKRWKDIKNINKEIEFMDAIILTSAVVI
>NZ_CP011008.1|WP_061461223.1|323777_324038_+|MerR-family-transcriptional-regulator
MGRRRSYEDILNSDFVSISELVRLTDIRYSTIKFYTEEGMLPFEQEDIRLTRRYPRIVASERLEEIKELKKKGLTILEIKKELKNK
>NZ_CP011008.1|WP_061461224.1|324480_325755_-|IS110-family-transposase
MNVKMQNKQNQLIERITDQHLVVGVDIAQHVHVARAVNYRGIVVGKPLSFQNNEEGFTSLLNWIKELKHLKNLDTTIVGMEPTGHYWINLSKWLVKQNMDVVTVNPHHVKRNKENRDNTQSKSDKKDALVIADMVKNGYYAFVRSTSESFEKLRVLMANRDVIVKRLVSSINQINRWVDVVFPEFREVFKDVSCKGAIASLRLFPTPAELCSLQPQDIVTGWKSCMKRHSGHKKAHSLLALAKRSIGTKQALDAYRLHLGQLLEEYDLASSQLERVTQEVTNVLEQIPFVKQLLAIKGISEISLAGILGEAGDLSGFAHGNALLRHAGLHLAEASSGKWKGQIVLSKRGRSRLRRYLFLATMSLVMNNPEFKALHSNNVKVKKIKKMKSIMKLCGKLARVLVGIARNGSAYKPEMVFPLEQLAA
>NZ_CP011008.1|WP_061461226.1|327275_327953_-|PAS-domain-containing-protein
MVVTNVEKLKQYIPMVHFIANIMGENCEVVLHDVTNPDHSIIEIVNGHVSERKINSPITDLALKILKDESYKDRDYICNYKSRSKKNKTLRSSSYFIKDEMNKIIGMICVNMDISDVINARNILDQFIMIDKPKNDPIESSKPTFDTHLFENFEENIEELLLSLIKGVLAEYDIPPERMSSQEKIEVVKILNEKGAFLLKGGVSEVAKYLDVSEATIYRYLNKIK
>NZ_CP011008.1|WP_061461227.1|328109_328496_+|RidA-family-protein
MKNAISTNNAPSAIGPYSQAVKMGDFLFVSGQLPINPSTNEMPESVAEQTKQSLENVKAILEAAGSDLQHVLKTTVFLKDMNTFTKMNEVYQSYFTENYPARSAVEVARLPKEALVEIEVIACVPNNK

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Crispr_ID: NZ_CP011008_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011008_2

823715-823819

Orphan

Consensus_repeat	Method
AAGCAAAACGCGCAATCTCAGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011008_2

>merge|NZ_CP011008|2|823715-823819|CRISPRCasFinder
AAGCAAAACGCGCAATCTCAGCAAGGTCAAGGCCAATTCGGTACTGAGTTTGCAAGTGAAACAAACGTTCAACAAGTAAGACAACAAAACGCGCAATCTCAGCAA

>NZ_CP011008|2|2|823715-823819|CRISPRCasFinder
AAGCAAAACGCGCAATCTCAGCAA	GGTCAAGGCCAATTCGGTACTGAGTTTGCAAGTGAAACAAACGTTCAACAAGTAAGA
CAACAAAACGCGCAATCTCAGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011008.1\|WP_155727208.1\|832032_832491_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP011008.1\|WP_061461740.1\|829388_831008_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP011008.1\|WP_061461733.1\|822828_823578_+\|enoyl-[acyl-carrier-protein]-reductase-FabL	unknown	unknown	gnl\|CDD\|236145
NZ_CP011008.1\|WP_061461738.1\|828484_828826_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011008.1\|WP_061461729.1\|819805_820072_+\|YfhJ-family-protein	unknown	unknown	gnl\|CDD\|379438
NZ_CP011008.1\|WP_061461735.1\|824108_824363_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372951
NZ_CP011008.1\|WP_048685440.1\|824596_825127_+\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|184219
NZ_CP011008.1\|WP_061461737.1\|827270_828191_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP011008.1\|WP_061461741.1\|831049_831688_-\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
NZ_CP011008.1\|WP_061461725.1\|816797_816983_-\|YfhD-family-protein	unknown	unknown	gnl\|CDD\|372930
NZ_CP011008.1\|WP_061461726.1\|817265_818186_-\|TIGR01777-family-protein	unknown	unknown	gnl\|CDD\|273800
NZ_CP011008.1\|WP_061461731.1\|821311_822430_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
NZ_CP011008.1\|WP_061461730.1\|820128_821106_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
NZ_CP011008.1\|WP_034305387.1\|819536_819692_-\|small,-acid-soluble-spore-protein-K	unknown	unknown	gnl\|CDD\|285399
NZ_CP011008.1\|WP_061461739.1\|828839_829370_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP011008.1\|WP_061461728.1\|819186_819498_+\|YfhH-family-protein	unknown	unknown	gnl\|CDD\|378063
NZ_CP011008.1\|WP_061461743.1\|832549_833641_-\|aromatic-acid-exporter-family-protein	unknown	unknown	gnl\|CDD\|226614
NZ_CP011008.1\|WP_061461732.1\|822535_822760_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011008.1\|WP_061461727.1\|818313_819111_+\|recombination-regulator-RecX	unknown	unknown	gnl\|CDD\|237619
NZ_CP011008.1\|WP_061461736.1\|825411_827160_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055

Protein	Function_ID	Function_description	E-value
NZ_CP011008.1\|WP_155727208.1\|832032_832491_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	8.46463e-25
NZ_CP011008.1\|WP_061461740.1\|829388_831008_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	9.21869e-154
NZ_CP011008.1\|WP_061461733.1\|822828_823578_+\|enoyl-[acyl-carrier-protein]-reductase-FabL	gnl\|CDD\|236145	PRK08063, PRK08063, enoyl-[acyl-carrier-protein] reductase FabL.	2.11156e-157
NZ_CP011008.1\|WP_061461729.1\|819805_820072_+\|YfhJ-family-protein	gnl\|CDD\|379438	pfam14043, WVELL, WVELL protein. This family includes the B. subtilis YfjH protein, which is functionally uncharacterized. This is not a homolog of E. coli YfjH, a synonym for IscX, which belongs to pfam04384. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length and contain a highly conserved WVELL motif.	6.31325e-39
NZ_CP011008.1\|WP_061461735.1\|824108_824363_+\|hypothetical-protein	gnl\|CDD\|372951	pfam14182, YgaB, YgaB-like protein. The YgaB-like protein family includes the B. subtilis YgaB protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.	2.61449e-14
NZ_CP011008.1\|WP_048685440.1\|824596_825127_+\|DUF402-domain-containing-protein	gnl\|CDD\|184219	PRK13662, PRK13662, hypothetical protein; Provisional.	1.5721e-123
NZ_CP011008.1\|WP_061461737.1\|827270_828191_-\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.75083e-14
NZ_CP011008.1\|WP_061461741.1\|831049_831688_-\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	4.71917e-32
NZ_CP011008.1\|WP_061461725.1\|816797_816983_-\|YfhD-family-protein	gnl\|CDD\|372930	pfam14151, YfhD, YfhD-like protein. The YfhD-like protein family includes the B. subtilis YfhD protein, which is functionally uncharacterized. Its expression is regulated by the sporulation-specific sigma factor sigma-F. This family of proteins is found in bacteria. Proteins in this family are approximately 50 amino acids in length. There is a single completely conserved residue E that may be functionally important.	3.25756e-17
NZ_CP011008.1\|WP_061461726.1\|817265_818186_-\|TIGR01777-family-protein	gnl\|CDD\|273800	TIGR01777, Hypothetical_UPF0105_protein_Rv2216/MT2273/Mb2239., TIGR01777 family protein. This model represents a clade of proteins of unknown function including the E. coli yfcH protein. [Hypothetical proteins, Conserved].	4.90832e-128
NZ_CP011008.1\|WP_061461731.1\|821311_822430_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	1.56027e-140
NZ_CP011008.1\|WP_061461730.1\|820128_821106_-\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	9.65333e-37
NZ_CP011008.1\|WP_034305387.1\|819536_819692_-\|small,-acid-soluble-spore-protein-K	gnl\|CDD\|285399	pfam08176, SspK, Small acid-soluble spore protein K family. This family consists of the small acid-soluble spore proteins (SASP) belonging to the K type (sspK). The sspK are unique to the spores of Bacillus subtilis and are expressed only in the forespore compartment of sporulating cells of this organism. The sspK gene is monocistronic and transcription is primarily by the RNA polymerase with the forespore-specific sigma factor, sigma-G. Mutation deleting sspK results in loss of SspK from the spore but had no discernible effect on sporulation, spore properties or spore germination.	2.56937e-15
NZ_CP011008.1\|WP_061461739.1\|828839_829370_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	2.0008e-41
NZ_CP011008.1\|WP_061461728.1\|819186_819498_+\|YfhH-family-protein	gnl\|CDD\|378063	pfam08838, DUF1811, Protein of unknown function (DUF1811). This is a bacterial family of uncharacterized proteins. Some of the proteins are annotated as being transcriptional regulators. The structure of one of the proteins in this family has revealed a beta-barrel like structure with helix-turn-helix like motif.	8.50048e-59
NZ_CP011008.1\|WP_061461743.1\|832549_833641_-\|aromatic-acid-exporter-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	2.88071e-62
NZ_CP011008.1\|WP_061461727.1\|818313_819111_+\|recombination-regulator-RecX	gnl\|CDD\|237619	PRK14135, recX, recombination regulator RecX; Provisional.	5.77038e-103
NZ_CP011008.1\|WP_061461736.1\|825411_827160_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0

>NZ_CP011008.1|WP_061461733.1|822828_823578_+|enoyl-[acyl-carrier-protein]-reductase-FabL
MEQKVALVTGSSKGLGRSTAIRLAEEGYDLVINYARSKSKALEVAAEIEALGRKALVVKANVGDVAKVKSMFEEIDAYYGRLDIFINNAASGVQRPLMELEESHWNWTMDINTKALLFCAQEAAKLMERNGGGKIVSISSLGSIRYLKNYTAVGVSKAALEALTRYLAVELASMNICVNAVSGGVIDTDALKSFPNRDEMLAEAAEQTPAGRMVEVEDMVNTILFLISDGASMIRGQTVIVDGGISLLV
>NZ_CP011008.1|WP_061461732.1|822535_822760_-|hypothetical-protein
MYVGRDMTELSMMKKSDWENSELAYFHHSLQQMVPYLNQEGQSIHSEIVKEIENRGGLNRQEADYTHGTKTIYD
>NZ_CP011008.1|WP_061461731.1|821311_822430_+|A/G-specific-adenine-glycosylase
MKEITIKTIEKIKIDDFQKDLVSWFLEEQRELPWRENKDPYRVWVSEIMLQQTRVDTVIPYFNRFVEWFPTLEDFAIADEEKVLKAWEGLGYYSRVRNLHSAVQEVKSSYNGIVPDDPEEISKLKGVGPYTAGAILSIAYGKPEPAVDGNVMRVLSRILMIYEDIAKPKTRKTFEAAVRKLIDHDHTSAFNQALMELGALICTPGKPACLLCPVQSHCLAFEAGVQSELPVKIQKKKTRDVPIVAAVLTNEKGEFLIHKRASEGLLANLWEYLNFENHSSLQHKREFFENRFQEMYGVKPEITDSLVRIEHVFSHLVWKVDTYTGMIKEAISEETLKEHQLKWVSEAEMEEFAFPVSHQKMKKAYKEKERIE
>NZ_CP011008.1|WP_061461730.1|820128_821106_-|metal-dependent-hydrolase
MDTGTHFVMGIALGGLATLDPVITQSPVTASAVIAGTILGSQAPDIDTVLKLRNNAVYIRNHRGITHSIPAVLLWPLIISGALFAIIPEANYLHLWLWTFLAVFLHVFVDIFNAYGTQALRPISSKWVALGVINTFDPFIFGIHVAGLILWGFGFPPGYLFLSIYGILVLYYISRFREQSFIKRAVKQQIPGARKILLSPTMRFHRWKIAVITEKNYYVARADNGYVKILDTFDRVPLPESEILEVAKKDINLAAFLSFSPVYRFEIEQKKEYYEVRFIDLRYRSNGYYPFVAVVHLDRDLNILNSYTGWIFSEAKLQKKLNIIL
>NZ_CP011008.1|WP_061461729.1|819805_820072_+|YfhJ-family-protein
MNDYHERLTKKLLEKNDHITYEQALTWVELLWEDFEATYAKAGHEYAGEEMTSRVVRTWIDNYGEHFHEFIAKNPKYQHLLNQQNRLH
>NZ_CP011008.1|WP_034305387.1|819536_819692_-|small,-acid-soluble-spore-protein-K
MRNKQKGFPNQNNNKFQGEPRAKARYASKRADGSINTHPQERMKASNERSN
>NZ_CP011008.1|WP_061461728.1|819186_819498_+|YfhH-family-protein
MSDVRYSKLSVYELQQEIAALTEKARKAEQLGMVNEFSVLERKVTMAKAYLLNPDDFKKGEIYQIEGDPGVYFKIDYMNGVFAWGYRLGGSGKEEALPISMLK
>NZ_CP011008.1|WP_061461727.1|818313_819111_+|recombination-regulator-RecX
MPNITKITTQKKRKDRYNIFVDEKYAFSVDEEVLLKFHLKKGMALDGLLLAEIQFHDEIQKAFTDALNYLSYRMRSESEIRLYLKKKETEEPIIKEAIHKLYSFNYLDDLEFAKAYVRTHVNGGNKGPTTLKLELKEKGVQEKLVVEALKEYPYDIQIEHARKLAGKSVKKEKNISERALKLKVEQTLLRKGFPRDVILEALEDVAVEKDEDEQWDSLCHHAEKMKRRYKNHEGFEYEQKMKQALYRKGFPIELIERYLSNPEMD
>NZ_CP011008.1|WP_061461726.1|817265_818186_-|TIGR01777-family-protein
MKIAIAGGSGFVGTALIDELSKENHDIYILTRHPEKFKKRTNSTYIGWLTKDAKPEKHLEGLDVFINLAGESLNSGRWNPERKRRIVESRVEASKEMNRILSILPEKVSVIINASAIGYYGISDHDTFTETSESTGDDFLVRTVKLWEKEAAKSRSYCKRFVLTRFGVILGEKEGALPMMVLPYKLFGGGRMGKGNQWLSWIHIHDAVRAIIFCMNDSRIEGPVNFTAPNPVQMNTFGETIGAVLHRPHWLPVPPFFLKKLLGEMSILVLEGQNVLPIKLKEEGFIFSFPTLKEALQNILKEDSHV
>NZ_CP011008.1|WP_061461725.1|816797_816983_-|YfhD-family-protein
MGRNNIHHNRDKNKQKLPQVPKNLKSDGLDVEYSSELADQEDVKAQARANAADRRAHNRRS
>NZ_CP011008.1|WP_061461735.1|824108_824363_+|hypothetical-protein
MEEFNRLINNQLKTMDKLLLLQSEIERCQDIEKQLLDQQEESEAVTIQEEIQLKKQELKSIHDMFERQTEEVIRYFQQGQAAIQ
>NZ_CP011008.1|WP_048685440.1|824596_825127_+|DUF402-domain-containing-protein
MGIVPAEGGKIQIHSYKHNGHIHRIWEETTVLKGTQNLVIAANDRTMVTESDGRTWITREPAICYFHSKYWFNVIGMLREDGVYYYCNISSPFTYDSGALKYIDYDLDIKVFPDMTFNLLDEDEYERHRKEMNYPDAIDSILKQNVDYLIYMIRQRKGPFSAEFIDSWYERFLTYR
>NZ_CP011008.1|WP_061461736.1|825411_827160_+|ABC-transporter-ATP-binding-protein
MESIKRYLQFVKPYKWQITGTVLIGLLKFAIPLLLPLLSKYIVDDIIGNGDLSRAVKSERLLWAMGIMLFIFVAVRPPIEYYRQYFAQWTGTKILYDIRNDLFTHIQKLSFKYYSNTRVGEVISRMITDVEQTKNFVITGLMNLWLDIATIIIVIAIMFKMDVKLTIVSIIMLPFYAFSIKHFFGKLRTYTRIRSQALADVQSHLHERVSGMSVIKSFAIEDREQELFAKQNKNFLDKALKHTSWNAKSFAVVNTITDIAPLLVIGFAGYQVIHEQLSLGTMVAFVGFIDRLYNPLRRLVNSSTTMTQTLASMDRVFEFVDEKYDIDDEPGAKELEHVDGRITFQDVSFAYDEKEASVLKHINLDVKPGETIALVGMSGGGKSSIVSLISRFYDVTEGRVLLDGTDIRKYKVRSLRDKIGMVLQDNILFSESVKANILMGRPDASDEEVFEAAKAANAHDFIIGLKDGYETKVGERGVKLSGGQKQRVAIARVFLKNPPILVLDEATSALDLESEHYIQEALDILAKNRTTIIVAHRLSTITHANRIVHIDNGEITETGTHEELMKKQGNYYSLFQVQQLDS
>NZ_CP011008.1|WP_061461737.1|827270_828191_-|EamA-family-transporter
MQLLKYIIMVLIGSISYGTLSTMIKFGFMDGHSSGELVGSQYLVGWLIVSVLFLFSFKYKVSWKSAGLLLFTGMMSTFVGKAYAVSVSELPASIAVVFLFQFTWIGVLIESFLNKRRPDKNKLIAIFVLFIGTLLAGAIFGQPLSALSLKGVLFGLLSALLFALYMYCNSQFAVGESSMKRLFFIATGAMVTAVFTTNPVTLVTNLVQTNLWYYGLLLGTLGVLVPFFFFAVSLPKVGVGLGTILCAAELPSAMVVSVIFLNEQVTSLQWFGMCLIIVGIALPEGIKHLPQFLPGRKKLPNKKRIS
>NZ_CP011008.1|WP_061461738.1|828484_828826_-|hypothetical-protein
MGIILIIIVAILAITGLITFNIKALTPEDKPVEEENSLEESASSSDDDPITEIITPTDNDELKMKDQDYRSALSKLHNQKPNDEPPIEKKSNLRKMKDEEYRGTLEDFQQNGD
>NZ_CP011008.1|WP_061461739.1|828839_829370_-|NAD(P)H-dependent-oxidoreductase
MKIYVVYDSEGNHTKALAESIAQGAAAVPGAEVLIDHVNEADVYKLPEMDAIIWGCPGHFGTISSSLKTWIDKLGYLWAEGALINKVGAVFCTTATIHGGLEATMLNLITPMLHQGMIIVGLPGTVPENALYGSYYGVGISCPPGVDDNITKNDLQLGEALGKRVAHVTRSFTNEL
>NZ_CP011008.1|WP_061461740.1|829388_831008_-|DHA2-family-efflux-MFS-transporter-permease-subunit
MASQTISVNENKGMKQFAPMLIILMLGLFMVILNQTLLSVAMPRMMAEFNVAATTIQWLSTGFMLVNGALIPLSAFLIERFGTRILFLAAMFLFTVGTFICGIAPNFPVILTGRLIQAAGGGILQPLVMTIILFIFPPEMRGKGMGIFGLAIMFAPAIGPTLSGWVIQEYSWRVMFYAMVPLGMIIMTLAFLSMRNVAEPKKIKLDLMGASLSLIGVASLLYGVSEAGSKGWTDSIVLGTIIIGLILLTLFVVQQLKSETPMLDFRVFKYDMFVLSNIISAIVTVAMFTGIFLLPIYLQTLRGFTPVQSGLLMLPGALVMMVMSPISGALFDKVGPRPLALVGLAITALTTFEFAKLTTETTYSTLVIIYAIRSLGMSLLMMPIMTAGMNQLPKHLNTHGTAMSNTLKQVTGAIGTSFVTTIYTTRASFHGTALGSEMSTSDPGFVQNFQTIVQSIMSSMNQTSEQAQETAMSLISSKIQGQANVMGINDAFFWATGFAIAGIVLSLFLRDVRKDKAIKLAKQEKLDVPLLPSPVKKSV
>NZ_CP011008.1|WP_061461741.1|831049_831688_-|HlyD-family-secretion-protein
MNRGRLVLINVIGLVIILAVVAGGAYYYYESTNFIKTDEAKVSGDLYTIVAPASGKLADWDLHEGDSVSKNDKVAYVTTLDGKEAVKTAAQGTIVKSQVHDEQLVQAGQTLAQTINMDDLSITANIEENKLKDIEKGDSVDIIIDGDPDTVFEGTLEQIGYATTSVFSVMGNQNNSGNYTKVTQKVPVKISIKAPSDKVLPGMNAEVKISTK
>NZ_CP011008.1|WP_155727208.1|832032_832491_+|MarR-family-transcriptional-regulator
MRRLDFKWEVTNSIEMQIFRIRKKLGAIVAKNLQPYGLTSPQFFILLILKKEGAIKSTQLADFLTVKPSAITVFVDKLVEMDYVKRQPSEKDRRVINLELKEAGQEILGRVLAEHNQLMGKNFNSFSEEELQDLLQKLDTIERAADQNLLDD
>NZ_CP011008.1|WP_061461743.1|832549_833641_-|aromatic-acid-exporter-family-protein
MKFGARILKTGIAIVLALYISELLNLPAPVLSGIAAIFAIQPTIYRSYQTVLEQIQGNIIGALVAVSFVLLFGNDIFIIGLAVMVVITINLKLKMDKTIVLSIVTAIAIMENQEGDFLNFAFIRLSSVLLGIVSSFIVNLVFIPPKYEAKLYTRITDVTEDILKWIRISTRHATEHTLLKKDISRLKAELLDLEHIYSMYKEEREYFKKNSIAKARKLVVYRQMIITTKKAFETLKRVHKFENEVYQMPEDFQRSILQQIDSLIRKHEQLILLHIEKIKSIEEIEDWNQDCLSRKELLAHFFEQQNQVDEMHDDLGHLSARLVPLISAVIEYDEQLEHLEKLIVSFQSFHKEDNEISVQYEED

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Crispr_ID: NZ_CP011008_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011008_3

1185450-1185568

Orphan

Consensus_repeat	Method
TACGTCTTTAACTGACACCTCATTTACAATATGATGTGAATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011008_3

>merge|NZ_CP011008|3|1185450-1185568|CRISPRCasFinder
TACGTCTTTAACTGACACCTCATTTACAATATGATGTGAATCATTTGTAATAAAACATTTGGGTATTTCAGTGTAATACGTCTTTAACTGACACCTCATTTACAATATGATGTGAATCA

>NZ_CP011008|3|3|1185450-1185568|CRISPRCasFinder
TACGTCTTTAACTGACACCTCATTTACAATATGATGTGAATCA	TTTGTAATAAAACATTTGGGTATTTCAGTGTAA
TACGTCTTTAACTGACACCTCATTTACAATATGATGTGAATCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011008.1\|WP_061462021.1\|1181650_1182013_-\|YtxH-domain-containing-protein	unknown	unknown	gnl\|CDD\|227313
NZ_CP011008.1\|WP_061462028.1\|1187782_1188487_+\|EcsC-family-protein	unknown	unknown	gnl\|CDD\|378945
NZ_CP011008.1\|WP_061462033.1\|1192529_1193465_+\|ferrochelatase	unknown	unknown	gnl\|CDD\|183526
NZ_CP011008.1\|WP_081108720.1\|1194474_1194603_-\|YhfH-family-protein	unknown	unknown	gnl\|CDD\|379490
NZ_CP011008.1\|WP_061462017.1\|1179489_1179672_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011008.1\|WP_061462030.1\|1189818_1190454_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
NZ_CP011008.1\|WP_061462023.1\|1182609_1183128_-\|tryptophan-transporter	unknown	unknown	gnl\|CDD\|293704
NZ_CP011008.1\|WP_061462029.1\|1188513_1189725_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349941
NZ_CP011008.1\|WP_061462018.1\|1179780_1180320_-\|DUF3267-domain-containing-protein	unknown	unknown	gnl\|CDD\|378690
NZ_CP011008.1\|WP_061462026.1\|1185732_1186476_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP011008.1\|WP_061462031.1\|1190620_1191136_-\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|225209
NZ_CP011008.1\|WP_061462027.1\|1186468_1187677_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|377581
NZ_CP011008.1\|WP_061462034.1\|1193738_1194314_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP011008.1\|WP_061462020.1\|1180892_1181471_-\|HTH-type-transcriptional-regulator-Hpr	unknown	unknown	gnl\|CDD\|237501
NZ_CP011008.1\|WP_061462024.1\|1183254_1184358_-\|3-phosphoserine/phosphohydroxythreonine-transaminase	unknown	unknown	gnl\|CDD\|235428
NZ_CP011008.1\|WP_061462015.1\|1179026_1179110_+\|YjcZ-family-sporulation-protein	unknown	unknown	unknown
NZ_CP011008.1\|WP_061462025.1\|1184646_1185069_-\|HIT-family-protein	unknown	unknown	gnl\|CDD\|238608
NZ_CP011008.1\|WP_061462019.1\|1180563_1180890_+\|DUF1878-family-protein	unknown	unknown	gnl\|CDD\|370213
NZ_CP011008.1\|WP_061462016.1\|1179293_1179377_+\|YjcZ-family-sporulation-protein	unknown	unknown	unknown
NZ_CP011008.1\|WP_061462032.1\|1191407_1192451_+\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|234644

Protein	Function_ID	Function_description	E-value
NZ_CP011008.1\|WP_061462021.1\|1181650_1182013_-\|YtxH-domain-containing-protein	gnl\|CDD\|227313	COG4980, GvpP, Gas vesicle protein [General function prediction only].	3.87512e-14
NZ_CP011008.1\|WP_061462028.1\|1187782_1188487_+\|EcsC-family-protein	gnl\|CDD\|378945	pfam12787, EcsC, EcsC protein family. Proteins in this family are related to EcsC from B. subtilis. This protein is found in an operon with EcsA and EcsB which are components of an ABC transport system. The function of this protein is unknown.	2.90457e-84
NZ_CP011008.1\|WP_061462033.1\|1192529_1193465_+\|ferrochelatase	gnl\|CDD\|183526	PRK12435, PRK12435, ferrochelatase; Provisional.	0
NZ_CP011008.1\|WP_081108720.1\|1194474_1194603_-\|YhfH-family-protein	gnl\|CDD\|379490	pfam14149, YhfH, YhfH-like protein. The YhfH-like protein family includes the B. subtilis YhfH protein, which is functionally uncharacterized. Its expression is repressed by the Spx paralogue MgsR, which regulates genes involved in stress response. This family of proteins is found in bacteria. Proteins in this family are typically between 42 and 53 amino acids in length.	1.03411e-12
NZ_CP011008.1\|WP_061462034.1\|1193738_1194314_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	5.17212e-15
NZ_CP011008.1\|WP_061462030.1\|1189818_1190454_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	1.97415e-38
NZ_CP011008.1\|WP_061462023.1\|1182609_1183128_-\|tryptophan-transporter	gnl\|CDD\|293704	pfam17099, TrpP, Tryptophan transporter TrpP. TrpP is a bacterial transmembrane protein that is probably involved in tryptophan uptake. Its expression is regulated by tryptophan-activated RNA-binding regulatory protein (TRAP).	2.01345e-38
NZ_CP011008.1\|WP_061462029.1\|1188513_1189725_-\|amidohydrolase	gnl\|CDD\|349941	cd08021, M20_Acy1_YhaA-like, M20 Peptidase aminoacylase 1 subfamily, includes Bacillus subtilis YhaA and Staphylococcus aureus amidohydrolase, SACOL0085. Peptidase M20 family, uncharacterized subfamily of bacterial proteins predicted as putative amidohydrolases or hippurate hydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). This family includes Staphylococcus aureus amidohydrolase, SACOL0085, which contains two manganese ions in the active site, and forms a homotetramer with variations in interdomain orientation which possibly plays a role in the regulation of catalytic activity.	0
NZ_CP011008.1\|WP_061462018.1\|1179780_1180320_-\|DUF3267-domain-containing-protein	gnl\|CDD\|378690	pfam11667, DUF3267, Putative zincin peptidase. This family of proteins has a conserved HEXXH motif, suggesting the members are putative peptidases of zincin fold.	5.8868e-14
NZ_CP011008.1\|WP_061462026.1\|1185732_1186476_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	8.87339e-82
NZ_CP011008.1\|WP_061462031.1\|1190620_1191136_-\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|225209	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only].	8.60085e-19
NZ_CP011008.1\|WP_061462027.1\|1186468_1187677_+\|ABC-transporter-permease	gnl\|CDD\|377581	pfam05975, EcsB, Bacterial ABC transporter protein EcsB. This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters.	3.17408e-114
NZ_CP011008.1\|WP_061462020.1\|1180892_1181471_-\|HTH-type-transcriptional-regulator-Hpr	gnl\|CDD\|237501	PRK13777, PRK13777, HTH-type transcriptional regulator Hpr.	1.88176e-122
NZ_CP011008.1\|WP_061462024.1\|1183254_1184358_-\|3-phosphoserine/phosphohydroxythreonine-transaminase	gnl\|CDD\|235428	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase.	0
NZ_CP011008.1\|WP_061462025.1\|1184646_1185069_-\|HIT-family-protein	gnl\|CDD\|238608	cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.	3.69096e-56
NZ_CP011008.1\|WP_061462019.1\|1180563_1180890_+\|DUF1878-family-protein	gnl\|CDD\|370213	pfam08963, DUF1878, Protein of unknown function (DUF1878). This domain is found in a set of hypothetical bacterial proteins.	2.17891e-23
NZ_CP011008.1\|WP_061462032.1\|1191407_1192451_+\|uroporphyrinogen-decarboxylase	gnl\|CDD\|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	0

>NZ_CP011008.1|WP_061462025.1|1184646_1185069_-|HIT-family-protein
MSDCIFCKIIDGEIPSTKVFENEHVLAFLDISQVTKGHTLVIPKVHKENLYELTPEIAKNLFEVVPEIARAMKQEFQPVGLNLLNNNGEAAGQSVFHFHMHLIPRHGEGDGFGAVWKTNTSDYTPDDLKQIADSIAQHIK
>NZ_CP011008.1|WP_061462024.1|1183254_1184358_-|3-phosphoserine/phosphohydroxythreonine-transaminase
MKRARNFNAGPAALPLEVLQRAQNEWLNIENSGMSVMELSHRSSEFEKIHNHAIQSLKDLMEIPENYEVLLLQGGASLQFSMIPMNILNDGKRADYVLTGSWSEKALKEAKKVGKTAVVASSKDEKYTFIPKVADIELNDDAAYLHITSNNTIYGTQWKEFPETGSIPLVADMSSDILSKKIDVSKFGIIYAGAQKNLGPSGITVVIIRKDLITDNEKIPSMMNYSIHSKNDSLYNTPPTLAIYLLSLVLDWAKEQGGVEKIAEINEEKAKVIYDAIDGSNGFYKGHALSDSRSFMNVTFTLPSEEAEVQFLKEVKQAGFVGLNGHRSIGGCRASIYNAVPLSHCQELADFMKKFQESYKAKEAQTL
>NZ_CP011008.1|WP_061462023.1|1182609_1183128_-|tryptophan-transporter
MKTKTLVSLSLLIGIGAALHFIIPGFFLGMKPDMMLLMMFLAITLFPAKKNVFIVALAAGAISAMTTTFPGGQIPNIIDKLATAFLFYLLFISLKKFSTSVVTVSVLTAVGTIISGAVFLGSAYYIVSLPGPFVALFGAVVLPAVLLNTVAMVIIYPIVNGIVRKSNIPINA
>NZ_CP011008.1|WP_061462021.1|1181650_1182013_-|YtxH-domain-containing-protein
MKAKSLLIGFLTGTVVAGAATLLSTPSSGKDLRTRIKTNTEEIKNTIDELKVKMLNIKDDTMEATQISKETVKTFISDVQVVIENWKQEIEPNKNELLKNVQEIESSLKELERAIPASKN
>NZ_CP011008.1|WP_061462020.1|1180892_1181471_-|HTH-type-transcriptional-regulator-Hpr
MQNKNYSMKEAMIFSQRIAQLSKALWKSIEKDWQQWIKPYDLNINEHHILWIAYHLNGSSISDVAKFGVMHVSTAFNFSKKLEERGFLTFSKKENDKRNTYIEITPEGEKLLLDLMETYDPSKNSAFSGALPLRELYGKFPDMIEMMAVIRNIYGEDFMQIFERSFDNIDQEFTDVEGKITKKKIEKETEPV
>NZ_CP011008.1|WP_061462019.1|1180563_1180890_+|DUF1878-family-protein
MKNINEEIEILRFHQRLLLNMIRNPEAKLDFLFVEKNFTKKEAEELLETCDILSKRYEIEKAEGYMNFRPLFNQFERKVNPRITIKECIDACLSQGLYVSFMKEMDRV
>NZ_CP011008.1|WP_061462018.1|1179780_1180320_-|DUF3267-domain-containing-protein
MNSWKTIDVAKQYGNCRLILFSVFTILMSFVLIYTLLSVFSSHVVLYDDQTMVFFSLLLLLYPVHKLLHYLPLRFLCKKVKTSWSLKWKLVLTCRVNVHYPIRKHLYLLTLVLPFFIMSVILIGCALSFPHYIHYFTILLSLHTGLCVSDFIYIKNLVGSPGHSFIEEHLEGYDILIQK
>NZ_CP011008.1|WP_061462017.1|1179489_1179672_-|hypothetical-protein
MISFWFIIFAILILYNINRMTNSLCIQKEIAEDRQPKVFRIINVLITIMLLSSYIEILYT
>NZ_CP011008.1|WP_061462016.1|1179293_1179377_+|YjcZ-family-sporulation-protein
MSGGIGGGFALIVVLFILLIIIGASWL
>NZ_CP011008.1|WP_061462015.1|1179026_1179110_+|YjcZ-family-sporulation-protein
MSNGFNGGFALLVVLFILLIIVGASFC
>NZ_CP011008.1|WP_061462026.1|1185732_1186476_+|ABC-transporter-ATP-binding-protein
MSLLEIKQLVGGYTKTPVLKGISFDIQPNELVGLIGLNGAGKSTTIKHIIGLMEPKGGSVSIHGKTLAQDPDTYRKQFTYVPETPILYDELTLEEHLKLTAMAHGLEESTYKERMDVLLKEFHMEKRLKWFPAHFSKGMKQKVMIMCAFLVQPSLYIVDEPFVGLDPLGIQSLLDLMRKMKESGAGILMSTHILATAERYCDSFIILHNGEIRAKGNLEQLREQFSMPGATLDDLYVQLTKEEIGHE
>NZ_CP011008.1|WP_061462027.1|1186468_1187677_+|ABC-transporter-permease
MNSQNLWKERYLGYINETQKYLRYIFNGHLVFVMVLVLGGLAYYYSDWVKTLKSDFPAEMIMAFVLSMIVTRSPINTFLKEPDTVFLLPLETKLKSYFKNSLVLSWVMQGFILLVVLIAFIPMYTKVTGAGGTDFGIILVVLLILKFLNLTMRWQVLKYQDTSVSKWDALIRFLLNGVMLYFICSRANILFALITILLLLGLYMYYRSATKDFVLKWERLVELENKRMNSFYRIANMFTDVPHLKGKVARRKWMDWLLSFIPYGEKSTYTYLYARTLLRSNDYVGLCFRLTIIGSVILSVFTSIWAHLIVTFMFLFMTALQLLPVWKAHEWKVWVSLYPLPAKMRESAVIKLISFFLLFEDLVFCLVLLVKGEWMSALAALAMGLVFLFGFKNYATKKIKNF
>NZ_CP011008.1|WP_061462028.1|1187782_1188487_+|EcsC-family-protein
MDEYGQKALSELVSWKKKVAKKSGRLERMSKKAQIKMNSYIPERVHKMITDSIKGMIEAVLSGSKYMSKEKNVALLSLQQKEEWVTETVTAYRKTAVIEGVGTGAAGLLIGLADFPLLLSIKMKLLFEISRIYGFDPNKYEERLFILHIFQMAFSSEEKKLETLRVIEEWDSGKWPEIDWQEFQQEYRDHIDVIKMFQLVPGFGAAVGAYANHHLLEQLGETAVNCYRIRLLKE
>NZ_CP011008.1|WP_061462029.1|1188513_1189725_-|amidohydrolase
MIQRLHDLIDGSYEEMVSIRRYLHQHPELSFQETQTAAFIAEYYEKLGIEHQKNVGGNGVIAKITGSKPGKTVAMRADFDALPIQDEKEVPYKSTVAGVMHACGHDGHTATLLVLAKNLNALKDELEGQFIFIHQHAEEYAPGGAKPMIDAGCLDGVDVIFGTHLWATVPTGTVQYAYGPLMAAADRFEIIIQGQGGHGAQPHKTRDAIVVGSQLVMALQQIVSRRLNPIDSAVITVGSFVADNAFNVIADKAKIIGTVRTFKEDVRSFIRGEIERIVKGTCLAADCTYEYRYVQGYPAVIPHDEETKFMIESTESIKEVLVTEEIDPDMTGEDFSYYLQNVKGTFFFTGARPKNEHTYPHHHPLFDFDEKAMLIAAKILGTAAVTYHNKEQSSPKVNESLLR
>NZ_CP011008.1|WP_061462030.1|1189818_1190454_+|phosphatase-PAP2-family-protein
MIKYSWMAVVLLCLLLFFFLMHEVQSEKTLAFDTYIAKLFAVGENTIPFTFFKSITYLGKSKVIGIVSLLCVLYLWIIKKNYLPMAVFSIGMAGGDVLNEWIKNHTQRVRPENHLLETGGYSFPSGHAMLGLIFFSMVAYFILKEVKGNSLKWVMGIGFVCLVLLIGISRIAMNVHFPTDILAGYALGAAYSLTLINLYKCVRWRSIYKKT
>NZ_CP011008.1|WP_061462031.1|1190620_1191136_-|antibiotic-biosynthesis-monooxygenase
MNVYITTGTYDFLKIKKDKHPNEKILLMQNSGTTVLLHETSGKTLFSSPRKYEVVDGKGHLQDHGYVVMNNIPVSEEGRPVFEHRFKKRAGFIENEPGFVALRILRPINSETYVILTIWEKQADFMSWQKSSSYQEAHNSDTNATITNSSQKMFSGEAYVTKYTLVKDPQE
>NZ_CP011008.1|WP_061462032.1|1191407_1192451_+|uroporphyrinogen-decarboxylase
MSKEITNDTFLKAARGEKTDHVPVWYMRQAGRSQPEYRKLKEKYSLFEITHQPELCAYVTRLPVEQYDVDAAILYKDIMTPLPAIGVDVEIQSGIGPVISNPIQSLTDVEKLGELDPEKDIPYVLDTIKLLTTEQLSVPLIGFSGAPFTIASYMIEGGPSKNYNKTKAFMYSEPVAWFALMDKLADMIIIYVKSQIKAGVKAIQIFDSWVGALNVEDYRVFIKPIMNRIFSSLREENVPLIMFGVGASHLALEWNDLPIDVVGLDWRLPITEARQMGIQKTVQGNLDPALLLSSWDVIEDRTKRILDQGMEQDGYIFNLGHGVFPSVNPETLKRLTAFIHEYSSKMK
>NZ_CP011008.1|WP_061462033.1|1192529_1193465_+|ferrochelatase
MSRKKMGLLVMAYGTPYNEEDIERYYTHIRHGRRPSDELIADLKGRYEAIGGLSPLAKITAAQAETLEKQLNSVQEEIEFKAYLGLKHIEPFVEDAVKQMHDDGIKEAVSIVLAPHFSTFSVKSYNGRAQDEAAKLGDLTITSVESWYDEPKFIQYWVDQLKEVIGKMTSEERDNYALIVSAHSLPEKILQLGDPYPNQLKETADMIAKGAGVTNYAVGWQSAGQTPEPWLGPDVQDLTRDLHQAKGYKAFIYIPVGFVAEHLEVLYDNDYECKVVTEDIGAGYYRPDMPNVKPEFIDALATIILNRLQEK
>NZ_CP011008.1|WP_061462034.1|1193738_1194314_+|TetR/AcrR-family-transcriptional-regulator
MSVDRKKLILEAATKSFSLFGYKATTMDQVAKIANVGKGTIYTFYKNKEELFKEIVQRMIEEMKYEAEQSLDEQLPFFENLHRAVYRILEFRQEHQLSLKLLQEEREIGTPAVQEMINEMEEAIVSYIKEKLKIAIDKGYIQPCDPEITAFLMLKMYLALIFDWERNHAPLGKEEIAELFKIYLFKGLSTP
>NZ_CP011008.1|WP_081108720.1|1194474_1194603_-|YhfH-family-protein
MIQSSIEFFKNLPPKQCMECGKKIEEQHECYGNHCDHCLSGE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP011008_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011008_4

2732277-2732360

Orphan

Consensus_repeat	Method
TTTGAAATATTCTTTTCCGGTTCATTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011008_4

>merge|NZ_CP011008|4|2732277-2732360|CRISPRCasFinder
TTTGAAATATTCTTTTCCGGTTCATTACTTTGATTTGAATGTGATGGATTCTGAGTTTTTGAAGTATTCTTTTCCGGTTCATTA

>NZ_CP011008|4|4|2732277-2732360|CRISPRCasFinder
TTTGAAATATTCTTTTCCGGTTCATTA	CTTTGATTTGAATGTGATGGATTCTGAGTT
TTTGAAGTATTCTTTTCCGGTTCATTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011008.1\|WP_155727320.1\|2726238_2726604_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_CP011008.1\|WP_061463326.1\|2722319_2722916_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP011008.1\|WP_061463324.1\|2718093_2719611_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227049
NZ_CP011008.1\|WP_061463333.1\|2732515_2732818_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011008.1\|WP_081109001.1\|2730623_2730797_+\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|222853
NZ_CP011008.1\|WP_061463336.1\|2739739_2740195_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|240033
NZ_CP011008.1\|WP_061463325.1\|2720547_2721891_-\|SCP2-sterol-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224516
NZ_CP011008.1\|WP_061463329.1\|2724647_2725595_+\|oligosaccharide-flippase-family-protein	unknown	unknown	gnl\|CDD\|274343
NZ_CP011008.1\|WP_061463335.1\|2737707_2739438_-\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092
NZ_CP011008.1\|WP_061463327.1\|2723604_2723985_+\|glyoxalase	unknown	unknown	gnl\|CDD\|226134
NZ_CP011008.1\|WP_061463328.1\|2724064_2724244_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011008.1\|WP_061463331.1\|2728723_2729374_+\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|177683
NZ_CP011008.1\|WP_061463330.1\|2726917_2727886_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011008.1\|WP_061463337.1\|2741499_2741838_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011008.1\|WP_061463339.1\|2743753_2744935_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270778
NZ_CP011008.1\|WP_061463334.1\|2733686_2734295_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NZ_CP011008.1\|WP_061466089.1\|2746906_2748226_-\|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223936
NZ_CP011008.1\|WP_061463340.1\|2744921_2746481_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340829
NZ_CP011008.1\|WP_061463341.1\|2748227_2749133_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|224131
NZ_CP011008.1\|WP_061463338.1\|2742339_2743344_-\|NAD-dependent-epimerase	unknown	unknown	gnl\|CDD\|187563

Protein	Function_ID	Function_description	E-value
NZ_CP011008.1\|WP_155727320.1\|2726238_2726604_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	4.37255e-15
NZ_CP011008.1\|WP_061463326.1\|2722319_2722916_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.88065e-11
NZ_CP011008.1\|WP_061463324.1\|2718093_2719611_+\|hypothetical-protein	gnl\|CDD\|227049	COG4705, COG4705, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown].	2.97638e-96
NZ_CP011008.1\|WP_061463336.1\|2739739_2740195_-\|NUDIX-hydrolase	gnl\|CDD\|240033	cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	4.79702e-54
NZ_CP011008.1\|WP_061463334.1\|2733686_2734295_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	5.19987e-13
NZ_CP011008.1\|WP_061463325.1\|2720547_2721891_-\|SCP2-sterol-binding-domain-containing-protein	gnl\|CDD\|224516	COG1600, COG1600, Uncharacterized Fe-S protein [Energy production and conversion].	2.92628e-18
NZ_CP011008.1\|WP_081109001.1\|2730623_2730797_+\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.42074e-16
NZ_CP011008.1\|WP_061463335.1\|2737707_2739438_-\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP011008.1\|WP_061463327.1\|2723604_2723985_+\|glyoxalase	gnl\|CDD\|226134	COG3607, COG3607, Predicted lactoylglutathione lyase [General function prediction only].	2.07008e-36
NZ_CP011008.1\|WP_061463331.1\|2728723_2729374_+\|2OG-Fe(II)-oxygenase	gnl\|CDD\|177683	PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional.	5.62257e-44
NZ_CP011008.1\|WP_061463339.1\|2743753_2744935_-\|hypothetical-protein	gnl\|CDD\|270778	cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Serine/Threonine Kinases. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play similar roles in coordinating cell morphology with cell cycle progression. Ukc1 is involved in morphogenesis, pathogenicity, and pigment formation. Cot1 plays a role in polar tip extension.The fungal NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	2.3766e-06
NZ_CP011008.1\|WP_061466089.1\|2746906_2748226_-\|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	gnl\|CDD\|223936	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane].	0
NZ_CP011008.1\|WP_061463329.1\|2724647_2725595_+\|oligosaccharide-flippase-family-protein	gnl\|CDD\|274343	TIGR02900, Stage_V_sporulation_protein_B, stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. [Cellular processes, Sporulation and germination].	7.29163e-89
NZ_CP011008.1\|WP_061463340.1\|2744921_2746481_-\|glycosyltransferase	gnl\|CDD\|340829	cd03799, GT4_AmsK-like, Erwinia amylovora AmsK and similar proteins. This is a family of GT4 glycosyltransferases found specifically in certain bacteria. AmsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.	1.70821e-70
NZ_CP011008.1\|WP_061463341.1\|2748227_2749133_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	7.62919e-169
NZ_CP011008.1\|WP_061463338.1\|2742339_2743344_-\|NAD-dependent-epimerase	gnl\|CDD\|187563	cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs. This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	0

>NZ_CP011008.1|WP_081109001.1|2730623_2730797_+|DDE-type-integrase/transposase/recombinase
MTHTDLGSQYTSSEFTQHIQNHHIKQSFSQKGCPYDNACIESFHALLKRKKSTTYNI
>NZ_CP011008.1|WP_061463331.1|2728723_2729374_+|2OG-Fe(II)-oxygenase
MTVDNKNSISKEQTIFNHIGNKIKMEDREINIIAKLEEPLLVVLGNVLSDEECDELIRLSKDKMHRSKIGVTPEVNEIRTSSSMFFQENENDIISKIEKRISSIMNIPIEHGDGIQILKYIPGQEYKAHFDFFTSASKATKNNRISTIVMYLNDVEHGGETFFPKLNFSVSPQKGMAVYFEYFYNDQNLNDLTLHGGAPVITGEKWVATQWMRRKK
>NZ_CP011008.1|WP_061463330.1|2726917_2727886_-|hypothetical-protein
MTVMKKQPISHLMKKRRFWGYGAAIALMPYLLIKIAWTFGLFMPTEQMGDPSWRTANAVTMVLAAVGILLALAFSMTWGERLPAWLVALPVWVGTGLLIPMLLLAPVLGPAAMIRDQQEGAVNVWVYEQIFVMVSLVGVGICLPFALAGYAKARWPEAFADPIDIELLPGNSQKLHITLARLVATGCILLGFIKLFWAVGGTIGINPAMLDNRDIWWHLLSLSTGVWAFAGAWGLLVLTTRRGSKRFLPPMAAAWISSGMLFSYNLFNRLSAIRPDAQPALEYPLAYVLTTELSSVLGVMMGIIILMVLHDRRRAMRSSRRN
>NZ_CP011008.1|WP_155727320.1|2726238_2726604_-|MarR-family-transcriptional-regulator
MFDATLQPAAFLIVRWLYSHGPANASTLAESTAMDRSSVSRLIGQLKNRGYVMSEPHSTDRRDVLLSLTTNGREKTTRAIREKESIFYETISGLTNSQLKEYIEMLKNLSQKKRIDKMNAL
>NZ_CP011008.1|WP_061463329.1|2724647_2725595_+|oligosaccharide-flippase-family-protein
MTKQSLFKGTMILTVAGFITKVLGFANGIVLANVIGPEGVGLIMMAMPVTGLLITLTTLGLPIAISKLVAEAEIKGNYRRVKKILVVSLVTTSLLGFILMIVAIFGAKALSSHFLTDQRAYYSLLAVIPIVPIVAVSSVIKGYFRGKQIMTPIALSQAIEQVVRIGLIFFLVQWLLPYGIEYAAAGAILCGIIGEGFSLLYLFSVFKWSKHKKFKLHHSFIKQLSKGKEIFFDLLKTGLPTTGNGLIQSLIGIIQPILITQSLALAGIGTALATKQYGIVMGYAIPLMLLPGFVTNSLSIALVPAISESKENNII
>NZ_CP011008.1|WP_061463328.1|2724064_2724244_-|hypothetical-protein
MPIKKEQRNELAYSLAQIAQKHGIEDYEVIVRAIRDGYPLGQDVTPDKVYELRKQSSID
>NZ_CP011008.1|WP_061463327.1|2723604_2723985_+|glyoxalase
MLQSVWFNLPVANLEKSEAFFEGIGFNINKNPDMLDKMVGIKVTEGSIIILIEKSHYEQVSRASVQPNANEVLVSIGVKENKEVDEILDKVEAAGGKVLERSTEHEGYYGGLFEDLDGHKFNLLVC
>NZ_CP011008.1|WP_061463326.1|2722319_2722916_-|TetR/AcrR-family-transcriptional-regulator
MVNRKGEQTKALILEKASKIFNSQGYRASSISDIMHETGLQKGGIYNHFENKEEIMLSAFSFSIDTMSHFFSEAMAGKQGYMERLHSIISVFEGIAERELFPGGCPIMNAAIEADDADPLLQEKVREAMDGLLGMVRNLVQEGIKKGEVKQGVDPEFVATVFISTLEGALALSKLYKNQEYMKRAVHHLRSFLAQNCA
>NZ_CP011008.1|WP_061463325.1|2720547_2721891_-|SCP2-sterol-binding-domain-containing-protein
MKKGTINDHPTVKQYYKKKEIMQGTEGRRIDTQWLRDLCLHAGADDVGFVTIDRSELEDQQKEILNLFPEARTLISFVCKMNREPLRSTARSIANTEFHHVVDNVTHIGHEIVKELEEQGIKALNPPAGFPMEQESTGKAWVISHKPIAVAAGLGQIGIHRNVIHPKFGNFILLGTILTNADMTLESQPIDYNPCLECKLCVAACPVGAIGADGHFNFSACYTHNYREFSGGFSDWVKKITDSKNSKSYRDKVNDAETASMWQSLSFGASYKAAYCMSVCPAGEDVIGEFLDDRKKFLKDVVKPLQDKSEMVYVVPNSDAEDHVKKRFPHKQVRPVSNGLRSKSIRAFLQVLPHMFQRNQAKDLAATYHFTFTGEENAQATVIIKNKTLTVEKGHLGDADFQLIADSQTWIRLMAKETGILSAVMSGKIRTKGQLKLFKAFSKCFPS
>NZ_CP011008.1|WP_061463324.1|2718093_2719611_+|hypothetical-protein
MQENQNKMKISLNKVPQVTMFFWIIKVLCTTVGETFADYINFNIGLGLTLTTIIMGVAFFIALFVQFKANKYVPAIYWVTVVLISVFGTLVTDNLTDNMGVPLEVSTAVFSVLLGLTFLFWYLSEKTLSIHSIFTRKREVFYWLTVLFTFALGTAVGDLYSEQLGFGYLNTGIGVVIIIALVFLAYKFLKLDGVLAFWIVYILTRPLGASIGDYLSQPKVNGGLGFGTTVTSVIFLIAILAIIVFLAISKIDTNAKSDMAETNQSNANKKHVLTQTIVVLVIFLVVGIGGYNWRSNNIASQGAVEQATLAGQLNDFVKIENDMLNAVNKNDFASAKKGADNLEHQWDTQEPMLRKIDSTTWTKIDGTIDSVLAAVRSSKPDINQSKTALTNSLSVLKGANKATSKSGASQTSLSGQLNDFAKIEIDIRNAVNKNDFASAKKRADELEHQWDTQEPKLRKIDGATWTKIDGTIDVVLAAVRSSNPDVNKCKTALNNSLSTINAVNK
>NZ_CP011008.1|WP_061463333.1|2732515_2732818_-|hypothetical-protein
MKLEGDWRLVAGSQSTACFSGMKFFENPTTDREPLSVHETTGNFTQIWFGEYEKEGNDIRVILHEPKAEPFIMVVNRRGNELKLQYEWKSANLVCSYQPD
>NZ_CP011008.1|WP_061463334.1|2733686_2734295_-|pentapeptide-repeat-containing-protein
MTILNVEEIIVQLESHRLWIETIGKKGEKLGLDEIDFRNLDLSKYPLDQAYLTACLFDGMNLNLKDMSSSLLCSSTFKFANLEGSDFCKSNVSYVDFTNANIKASRFADSECIETVFVKADLSNANLVGGLFDEADFREASLLNADVRLSTFEGVLLKGAKLGGIRGLEEAFIKSVNIGTPEHPIILKGEEGRQWLINEIKE
>NZ_CP011008.1|WP_061463335.1|2737707_2739438_-|phospho-sugar-mutase
MDWKSLYTIWTSYRNLDNEMRLMLEEMKDDEIALEDAFYKNLDFGTGGMRGEIGPGTNRMNIYTVRKATVGLAEYIQLFGNEAKSRGVVIAYDSRHKSPEFALEAARTLATKGIKAYLFDELRPTPQLSFSVRKLGAFAGIVITASHNPSEYNGYKVYGSDGAQLPPEAADQVINYVNAIESELSIVVEEEEILKDRGLIQIIGEELDIAYNEHLLTIPENPKLADEIDVKLVFTPLHGTANKSVKRALHDLGYRNVHIVKEQEMPDANFPTVKVPNPEEHAAFEMSIALGNRVDADLLIATDPDADRLGISVKNNAGDYVVLTGNQTGALFLDYLISQKQKKGTLPENGVVLKTIVTSEIGRAISEQNGLKAVDVLTGFKFIAEKINEYHTSGEHSFLFGYEESYGYLIKDFARDKDAIQATILAVEVCAYYKKQGKTMYEGLLDVFDRYGYYLEDLQSLTLKGIEGARQIEAILNELRENPPDQICGLQVVVQEDYLSRKKYMFASNREEAIKLPKSNVLKYFLEDGTWVCLRPSGTEPKIKFYFGVKGSSMKEAKGKLSTVMKDFMRSINKML
>NZ_CP011008.1|WP_061463336.1|2739739_2740195_-|NUDIX-hydrolase
MGYIEDLRKLVGKRPVILTGAKVLVFNPLGQILLQYRTDTKVWGLPGGLMELGESLEETALREVKEETGLTIGGLQFLKVLSGVNYFIHLPNGDQFYSVNAFYTTNEIIEGTLKPDGNEGSAVQFFPINQLPKDMDPDIKKEICNYSRFRN
>NZ_CP011008.1|WP_061463337.1|2741499_2741838_-|hypothetical-protein
MNPKNMKTPLEVLKEYNLSDFLMTSLTRNSAKDLLFKLNPLFENYLKVCSEDLPYKDIYKADSMFPHEFHKQVKQIEEQGKIKKLGNYQELLVLAGREKSKYEFLVKGTEAG
>NZ_CP011008.1|WP_061463338.1|2742339_2743344_-|NAD-dependent-epimerase
MNIIVTGAAGFIGFHLTKRLLAQDINVIGVDNINDYYDVSLKNNRLKILEENPDFEFHKMDLLDKEKLNQLFKDRTIDIVINLAAQAGVRYSIDNPDSYVNSNLVGFVNILEVCRQNNVKHLIYASSSSVYGANINIPFSTKDQVDHPVSLYAATKKSNELMAHTYSHLYNIPTTGLRFFTVYGPWGRPDMAYYSFTKNIIEENTIKVFNNGDMRRDFTYIDDIVEGIIRLLDKPPVCNIGWDRANPDSSSSYAPYKIYNIGNNKPVKLMDFINTLEKLIGKKAKIEFLPMQPGDVKETYADIADLHADVGFYPSTRIEEGLTHFVNWYNKYNK
>NZ_CP011008.1|WP_061463339.1|2743753_2744935_-|hypothetical-protein
MENFKTITVTKGEKSLEIHNPTTYSLIGMGAQGAVFKLSEDKCVKIYSDPVQAKMEDEALNAGKNLPFMPLLYDTGPNYIVMEYFNAPTLKDYLRNYTYIPDSIVKKLLYILRELKQAKFTMIDAPLRHIFVVGNEELKVIDHVNSFKRMHPVPLKLLRDLKIILLKDSFLAQVKKLEPDTFNEWEDYFNQNSLDFRNIPVLSGGSGNGVKVDSAITQTLIGKGHQGAVYRVSEDTCVKLYGKTEHANQEKMVLLSSQDLPFIPKVFETGPNYILMEYLLGPDLNTFLKKQSVLSEDITKRLLYILKTMEKSGFKQIDAPLRHIIITRNGFKLVDHVYSFSREQKRPLELFKDLREINFLDSFLKQVKAIDPGTYAEWAKTPIPLDENENTLM
>NZ_CP011008.1|WP_061463340.1|2744921_2746481_-|glycosyltransferase
MHTVMHLNLRVDPTQYISQIREVPDYDYIHMVRQPKDMIELSLLNEKVHYLNEIFSPKEYVKRNNISLLHAHHGQLGMLLLPLKEETNLPLVTSIRGRDATLANQPIGYLDNMKKLFDRGERFFPVCQYLADRLIAWGCPSEKIRVLYGGVDLNEFNYRTPHKGGSQNILSIGRLVEKKGHHILMQAFQKIRDKFPNATLSIIGRGELEEYLISLANQLNLGDSFRLLNHLPKDQVREQMTNADIFCAASLEAANGDVEGIPNTLKEAMAIGVPVISTNHAGIPELITHNKEGVLVQENNVDELADALEFMLTNREIWETYTVSARQKVEQNFNLVHQLQQQAEFYDELLAPYKVSKQNSVTPRQIDKKTLKETTKPQQQDKYDGETIAPRKKAGLARKALIYMQQLQEHQQHQQLQEHQQHQQLQQHQQLQQLQQLQQLQQLHQQTKDKVKDKHVASNKKDKKAKIQQKTKGNEETIASRKKKNKAQKSEKVKKSLNKIQQFQQKSMDEQLGGDHGEF
>NZ_CP011008.1|WP_061466089.1|2746906_2748226_-|UDP-glucose/GDP-mannose-dehydrogenase-family-protein
MKIAVLGTGYVGLSTGVCLSEIGHSVICIDTDEKKIKSLHHGISPIYEPGLENLLAQNAAAGRLLFTTSHREALNGAEIIIIAVGTPQMEDGGADLSYIVQAAKDIAANLVQSSVVVIKSTVPVGTNDFIKKIMEELCNKRITFNMVSNPEFLRQGSAVMDTMQADRIIIGSENDEAAKKVQEMYRPLNVPFILTSIRSAEMIKYASNAFLATKISFINEVANLCGVVGADVKDVAKGMGKDKRIGEAFLQPGIGYGGSCFPKDVKALLHTAKLNGVHFSLLKETVAINDYQQELLVTKAINRLGDLKGKKVAMLGLAFKPETDDMREAPSIKIARSLTKLGAEVVAYDPVAIDNAKNILGDTIRFASSVHEATVDADAVFIVTEWNEFRHLDLETLMNTMKQKIVFDGRNCLEENRIRACKKIEYYPIGRPAIVIGMT
>NZ_CP011008.1|WP_061463341.1|2748227_2749133_-|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MKIRKAIIPAAGLGTRFLPATKAQAKEMLPIVDKPTIQYIVEEAVASGIEEIIIIIGRGKRSIEDHFDKSYELEDALLRKNQLDILEEVQKISSLANIYYVRQKEPMGLGHAILCAKSFIGNEPFAVLLGDDIVMSETPCLKQIISVFEYCNSSVVAVQNVPEKDVSKYGIIKPKGTMIEPNLFHIDSLVEKPKREEAPSRYAIMGRYVFRPEIFETMSMLPVGHGNELQLTDAINELNKQQAVLAYNFEGNRYDIGDKVGFIKATIDFALRRDDIRDEVLSYLRDVNKKENLQIIKRELE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011008_4	4.1\|2732304\|30\|NZ_CP011008\|CRISPRCasFinder	2732304-2732333	30	NZ_CP019641	Planococcus sp. Y42 plasmid unnamed1, complete sequence	27978-28007	8	0.733
NZ_CP011008_1	1.1\|319165\|34\|NZ_CP011008\|CRISPRCasFinder	319165-319198	34	NC_007105	Bacillus cereus E33L plasmid pE33L54, complete sequence	49684-49717	9	0.735
NZ_CP011008_1	1.1\|319165\|34\|NZ_CP011008\|CRISPRCasFinder	319165-319198	34	NZ_CP009966	Bacillus cereus E33L plasmid pBCO_2, complete sequence	50253-50286	9	0.735
NZ_CP011008_1	1.1\|319165\|34\|NZ_CP011008\|CRISPRCasFinder	319165-319198	34	NC_008014	Lawsonia intracellularis PHE/MN1-00 plasmid 3, complete sequence	171959-171992	9	0.735
NZ_CP011008_1	1.1\|319165\|34\|NZ_CP011008\|CRISPRCasFinder	319165-319198	34	NC_020130	Lawsonia intracellularis N343 plasmid 3, complete sequence	171981-172014	9	0.735

1. spacer 4.1|2732304|30|NZ_CP011008|CRISPRCasFinder matches to NZ_CP019641 (Planococcus sp. Y42 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

ctttgatttgaatgtgatggattctgagtt	CRISPR spacer
gctccaattgaatgtgatgaattctgagga	Protospacer
 .*. * ************.********

2. spacer 1.1|319165|34|NZ_CP011008|CRISPRCasFinder matches to NC_007105 (Bacillus cereus E33L plasmid pE33L54, complete sequence) position: , mismatch: 9, identity: 0.735

acaagaggaaaagaaacacaaacaagaggaagaa	CRISPR spacer
acaagaggaaaagaaagacaaaaaagaaactact	Protospacer
**************** ***** ****..  .

3. spacer 1.1|319165|34|NZ_CP011008|CRISPRCasFinder matches to NZ_CP009966 (Bacillus cereus E33L plasmid pBCO_2, complete sequence) position: , mismatch: 9, identity: 0.735

acaagaggaaaagaaacacaaacaagaggaagaa	CRISPR spacer
acaagaggaaaagaaagacaaaaaagaaactact	Protospacer
**************** ***** ****..  .

4. spacer 1.1|319165|34|NZ_CP011008|CRISPRCasFinder matches to NC_008014 (Lawsonia intracellularis PHE/MN1-00 plasmid 3, complete sequence) position: , mismatch: 9, identity: 0.735

acaagaggaaaagaaacacaaacaagaggaagaa	CRISPR spacer
agatattaagaagaaacatagacaagaggaagaa	Protospacer
* * .  .*.********.*.*************

5. spacer 1.1|319165|34|NZ_CP011008|CRISPRCasFinder matches to NC_020130 (Lawsonia intracellularis N343 plasmid 3, complete sequence) position: , mismatch: 9, identity: 0.735

acaagaggaaaagaaacacaaacaagaggaagaa	CRISPR spacer
agatattaagaagaaacatagacaagaggaagaa	Protospacer
* * .  .*.********.*.*************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

411662 : 419956

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061461267.1\|411662_412955_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.3e-18	24.9
WP_061461268.1\|413057_413777_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3HI61	Synechococcus_phage	7.5e-48	43.0
WP_034306118.1\|413769_414024_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_061461269.1\|414020_414707_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_061461270.1\|414690_416913_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.2e-166	43.1
WP_061461271.1\|416897_418313_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.5e-55	34.0
WP_061461272.1\|418355_419381_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	1.0e-66	45.6
WP_061461273.1\|419380_419956_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	9.0e-28	37.2

DBSCAN-SWA_2

1733281 : 1778114

Bacillus_phage(25.0%)

integrase,coat,tRNA,transposase

attL 1764006:1764021|attR 1781648:1781663

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061462480.1\|1733281_1734826_+\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_061462481.1\|1734827_1735256_+	RicAFT regulatory complex protein RicA family protein	NA	NA	NA	NA
WP_081108756.1\|1735405_1735537_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_081108757.1\|1735746_1736151_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_056526911.1\|1736888_1737428_+\|coat	outer spore coat protein CotE	NA	NA	NA	NA
WP_061462482.1\|1737697_1740325_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	1.0e-41	26.1
WP_061462483.1\|1740347_1742288_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	5.6e-74	34.1
WP_061462484.1\|1743636_1744287_-	cupin domain-containing protein	NA	NA	NA	NA
WP_061462485.1\|1744652_1746545_+	oligopeptide transporter, OPT family	NA	NA	NA	NA
WP_061462486.1\|1746534_1746900_+	PqqD family protein	NA	NA	NA	NA
WP_061462487.1\|1747278_1747887_+	methyltransferase	NA	NA	NA	NA
WP_061462488.1\|1747987_1749877_-	asparagine synthase (glutamine-hydrolyzing)	A0A1V0SGM7	Hokovirus	5.6e-34	29.2
WP_061466026.1\|1750239_1750956_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_061462489.1\|1751243_1751552_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_061462490.1\|1751556_1752906_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_061466027.1\|1752922_1753270_+	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA
WP_061462491.1\|1753266_1754610_+	6-phospho-beta-glucosidase	NA	NA	NA	NA
WP_061462492.1\|1754606_1755338_+	chitin disaccharide deacetylase	NA	NA	NA	NA
WP_061462493.1\|1755429_1756611_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_061462494.1\|1756650_1757088_-	DUF1641 domain-containing protein	NA	NA	NA	NA
WP_155727194.1\|1757843_1759173_+\|transposase	IS3 family transposase	A0A0C5AC89	Paenibacillus_phage	1.8e-31	37.1
WP_061462495.1\|1759998_1760454_+	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_061462496.1\|1760587_1761295_+	response regulator transcription factor	W8CYM9	Bacillus_phage	6.9e-22	29.5
WP_061462497.1\|1761291_1762050_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_155727512.1\|1762046_1762241_+	hypothetical protein	NA	NA	NA	NA
1764006:1764021	attL	NA	NA	NA	NA
WP_061462499.1\|1765687_1767019_+	GHKL domain-containing protein	NA	NA	NA	NA
WP_081108759.1\|1767412_1768396_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_034313436.1\|1768399_1768633_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_061466029.1\|1769039_1769996_+	stage V sporulation protein K	G3MAX6	Bacillus_virus	5.1e-52	43.2
WP_061462500.1\|1770033_1770642_-	trimeric intracellular cation channel family protein	NA	NA	NA	NA
WP_061462501.1\|1770806_1772060_+	GTPase HflX	NA	NA	NA	NA
WP_061462502.1\|1772072_1773341_+	methionine gamma-lyase family protein	NA	NA	NA	NA
WP_061462503.1\|1773536_1773938_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_061462504.1\|1773978_1775313_+	type I glutamate--ammonia ligase	NA	NA	NA	NA
WP_155727513.1\|1775411_1775591_-\|integrase	tyrosine-type recombinase/integrase	A0A0M5M609	Bacillus_phage	1.8e-11	65.4
WP_155727270.1\|1776134_1776491_+	hypothetical protein	NA	NA	NA	NA
WP_061462506.1\|1777274_1778114_+\|integrase	tyrosine-type recombinase/integrase	A0A1I9SC88	Mycobacterium_phage	2.7e-09	25.5
1781648:1781663	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2942764 : 3009667

Bacillus_phage(50.0%)

coat,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061463488.1\|2942764_2942998_+\|coat	spore coat associated protein CotJA	NA	NA	NA	NA
WP_061463489.1\|2942998_2943265_+\|coat	spore coat protein CotJB	NA	NA	NA	NA
WP_061463490.1\|2943277_2943847_+	manganese catalase family protein	NA	NA	NA	NA
WP_061463491.1\|2943895_2944768_-	hypothetical protein	NA	NA	NA	NA
WP_081108822.1\|2944931_2945174_-	response regulator	NA	NA	NA	NA
WP_061463493.1\|2945232_2946423_+\|tRNA	alanyl-tRNA editing protein	NA	NA	NA	NA
WP_061463494.1\|2946519_2946933_-	hypothetical protein	NA	NA	NA	NA
WP_061463495.1\|2947012_2947207_-	hypothetical protein	NA	NA	NA	NA
WP_061463496.1\|2947346_2947868_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_061463497.1\|2947906_2950165_-	UvrD-helicase domain-containing protein	NA	NA	NA	NA
WP_061463498.1\|2950758_2950998_+	hypothetical protein	NA	NA	NA	NA
WP_061463499.1\|2951338_2951740_-	RDD family protein	NA	NA	NA	NA
WP_061463500.1\|2952081_2953701_+	ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	1.3e-52	27.5
WP_061463501.1\|2953898_2954171_+	hypothetical protein	NA	NA	NA	NA
WP_061463502.1\|2955462_2956428_-	carbohydrate kinase	NA	NA	NA	NA
WP_061463503.1\|2956545_2959464_-	GH32 C-terminal domain-containing protein	S6ATV4	Bacillus_phage	9.8e-30	43.1
WP_061463504.1\|2959648_2960635_-	ABC transporter permease	NA	NA	NA	NA
WP_061463505.1\|2960631_2962197_-	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.8e-15	30.4
WP_061463506.1\|2962277_2963258_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_061463507.1\|2963804_2964557_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_061466106.1\|2965180_2966719_-	glycoside hydrolase family 32 protein	F8WPR5	Bacillus_phage	1.8e-91	40.5
WP_061463508.1\|2966824_2968288_-	glycoside hydrolase family 68 protein	NA	NA	NA	NA
WP_061463509.1\|2968433_2969708_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_061463510.1\|2969707_2970874_-	response regulator	NA	NA	NA	NA
WP_061463511.1\|2970879_2972682_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	7.2e-15	28.2
WP_155727271.1\|2973506_2974839_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.3e-29	35.6
WP_081108824.1\|2975785_2976001_-	EamA family transporter	NA	NA	NA	NA
WP_061463513.1\|2976155_2977772_-	FMN-binding glutamate synthase family protein	NA	NA	NA	NA
WP_061463514.1\|2977819_2978449_-	NAD(P)H-binding protein	NA	NA	NA	NA
WP_034307388.1\|2979096_2979279_-	YolD-like family protein	NA	NA	NA	NA
WP_061463516.1\|2980530_2981628_-	gluconolaconase	NA	NA	NA	NA
WP_061463517.1\|2982038_2982422_-	VOC family protein	NA	NA	NA	NA
WP_061463518.1\|2986079_2986586_-	hypothetical protein	NA	NA	NA	NA
WP_061463519.1\|2988002_2988185_-	hypothetical protein	NA	NA	NA	NA
WP_155727527.1\|2988325_2988424_-	hypothetical protein	NA	NA	NA	NA
WP_061463520.1\|2988705_2989158_+	hypothetical protein	NA	NA	NA	NA
WP_061463521.1\|2989171_2989471_+	DUF2653 family protein	NA	NA	NA	NA
WP_155727271.1\|2989639_2990973_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.3e-29	35.6
WP_061463522.1\|2993513_2994593_-	Ger(x)C family spore germination protein	NA	NA	NA	NA
WP_061463523.1\|2994589_2995654_-	GerAB/ArcD/ProY family transporter	NA	NA	NA	NA
WP_081108826.1\|2995646_2996975_-	spore germination protein	NA	NA	NA	NA
WP_155727329.1\|2997497_2997635_+	Fic family protein	NA	NA	NA	NA
WP_061463524.1\|2998270_2999734_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_061463525.1\|2999794_3001090_-	MFS transporter	NA	NA	NA	NA
WP_081108827.1\|3001216_3002452_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_061463526.1\|3002583_3003789_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_061463527.1\|3003807_3005250_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_061463528.1\|3005839_3006505_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_061463529.1\|3006508_3006724_+	hypothetical protein	NA	NA	NA	NA
WP_061463530.1\|3007232_3008369_-	glutathione-dependent formaldehyde dehydrogenase	E3SJ82	Synechococcus_phage	2.4e-16	26.2
WP_061463531.1\|3008384_3008747_-\|coat	spore coat protein	NA	NA	NA	NA
WP_061463532.1\|3008759_3008975_-	hypothetical protein	NA	NA	NA	NA
WP_061463533.1\|3009164_3009368_+	hypothetical protein	NA	NA	NA	NA
WP_061463534.1\|3009367_3009667_+\|coat	spore coat protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011009

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP011008

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection