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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011007 Bacillus pumilus strain SH-B9 chromosome, complete genome 1 crisprs DEDDh,csa3,WYL,DinG,cas3 0 2 8 0
NZ_CP011023 Bacillus pumilus strain SH-B9 plasmid pSHB9, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP011007
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011007_1 2832964-2833566 Orphan NA
15 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP011007_1 1.4|2833099|36|NZ_CP011007|CRT 2833099-2833134 36 MN692989 Marine virus AFVG_117M66, complete genome 17804-17839 6 0.833
NZ_CP011007_1 1.6|2833189|36|NZ_CP011007|CRT 2833189-2833224 36 MN692989 Marine virus AFVG_117M66, complete genome 17804-17839 6 0.833
NZ_CP011007_1 1.4|2833099|36|NZ_CP011007|CRT 2833099-2833134 36 MN694312 Marine virus AFVG_250M269, complete genome 21435-21470 7 0.806
NZ_CP011007_1 1.6|2833189|36|NZ_CP011007|CRT 2833189-2833224 36 MN694312 Marine virus AFVG_250M269, complete genome 21435-21470 7 0.806
NZ_CP011007_1 1.4|2833099|36|NZ_CP011007|CRT 2833099-2833134 36 MN693418 Marine virus AFVG_25M180, complete genome 18658-18693 9 0.75
NZ_CP011007_1 1.6|2833189|36|NZ_CP011007|CRT 2833189-2833224 36 MN693418 Marine virus AFVG_25M180, complete genome 18658-18693 9 0.75
NZ_CP011007_1 1.4|2833099|36|NZ_CP011007|CRT 2833099-2833134 36 MN694487 Marine virus AFVG_250M1119, complete genome 20038-20073 10 0.722
NZ_CP011007_1 1.6|2833189|36|NZ_CP011007|CRT 2833189-2833224 36 MN694487 Marine virus AFVG_250M1119, complete genome 20038-20073 10 0.722

1. spacer 1.4|2833099|36|NZ_CP011007|CRT matches to MN692989 (Marine virus AFVG_117M66, complete genome) position: , mismatch: 6, identity: 0.833

ggctactggcgctacaggggctactggcgctaccgg	CRISPR spacer
agctactggcgctacaggtgctgctggcgctcaagg	Protospacer
.***************** ***.********   **

2. spacer 1.6|2833189|36|NZ_CP011007|CRT matches to MN692989 (Marine virus AFVG_117M66, complete genome) position: , mismatch: 6, identity: 0.833

ggctactggcgctacaggggctactggcgctaccgg	CRISPR spacer
agctactggcgctacaggtgctgctggcgctcaagg	Protospacer
.***************** ***.********   **

3. spacer 1.4|2833099|36|NZ_CP011007|CRT matches to MN694312 (Marine virus AFVG_250M269, complete genome) position: , mismatch: 7, identity: 0.806

ggctactggcgctacaggggctactggcgctaccgg	CRISPR spacer
tgctactggtgctacaggggctactggcccacaagg	Protospacer
 ********.****************** *    **

4. spacer 1.6|2833189|36|NZ_CP011007|CRT matches to MN694312 (Marine virus AFVG_250M269, complete genome) position: , mismatch: 7, identity: 0.806

ggctactggcgctacaggggctactggcgctaccgg	CRISPR spacer
tgctactggtgctacaggggctactggcccacaagg	Protospacer
 ********.****************** *    **

5. spacer 1.4|2833099|36|NZ_CP011007|CRT matches to MN693418 (Marine virus AFVG_25M180, complete genome) position: , mismatch: 9, identity: 0.75

ggctactggcgctacaggggctactggcgctaccgg	CRISPR spacer
tccggctggacctacaggggctactggcgctcaagg	Protospacer
  * .****  ********************   **

6. spacer 1.6|2833189|36|NZ_CP011007|CRT matches to MN693418 (Marine virus AFVG_25M180, complete genome) position: , mismatch: 9, identity: 0.75

ggctactggcgctacaggggctactggcgctaccgg	CRISPR spacer
tccggctggacctacaggggctactggcgctcaagg	Protospacer
  * .****  ********************   **

7. spacer 1.4|2833099|36|NZ_CP011007|CRT matches to MN694487 (Marine virus AFVG_250M1119, complete genome) position: , mismatch: 10, identity: 0.722

ggctactggcgctacaggggctactggcgctaccgg	CRISPR spacer
ggctgctggcgctgcaggggctactgctagcccatg	Protospacer
****.********.************ .. . *  *

8. spacer 1.6|2833189|36|NZ_CP011007|CRT matches to MN694487 (Marine virus AFVG_250M1119, complete genome) position: , mismatch: 10, identity: 0.722

ggctactggcgctacaggggctactggcgctaccgg	CRISPR spacer
ggctgctggcgctgcaggggctactgctagcccatg	Protospacer
****.********.************ .. . *  *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 22157 : 30876 8 uncultured_Mediterranean_phage(16.67%) tRNA NA
DBSCAN-SWA_2 544393 : 556129 12 Streptococcus_phage(37.5%) integrase attL 541192:541205|attR 551324:551337
DBSCAN-SWA_3 674819 : 684714 9 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_4 1723031 : 1729291 6 Bacillus_phage(83.33%) NA NA
DBSCAN-SWA_5 2111729 : 2118113 10 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_6 2462342 : 2548335 92 Bacillus_phage(40.0%) plate,capsid,integrase,portal,tail,terminase,tRNA,protease,coat,holin,head attL 2535651:2535668|attR 2550713:2550730
DBSCAN-SWA_7 2761642 : 2879562 145 Bacillus_phage(23.53%) plate,capsid,integrase,portal,terminase,tail,holin attL 2798882:2798920|attR 2852684:2852722
DBSCAN-SWA_8 3422277 : 3480450 60 Bacillus_phage(25.0%) transposase,tRNA,protease,coat,bacteriocin NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage