Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011971 Steroidobacter denitrificans strain DSM 18526 chromosome, complete genome 6 crisprs cas5,cas8c,cas7,cas4,cas1,cas2,PD-DExK,csa3,DEDDh,cas3,DinG 0 3 5 0

Results visualization

1. NZ_CP011971
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011971_1 31993-34132 TypeI I-C
32 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011971_2 273263-273391 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011971_3 378275-378383 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011971_4 950976-951085 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011971_5 1170712-1170815 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011971_6 2317177-2317280 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP011971_1 1.20|33280|34|NZ_CP011971|PILER-CR,CRISPRCasFinder,CRT 33280-33313 34 NC_017957 Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence 679922-679955 9 0.735
NZ_CP011971_1 1.1|32024|35|NZ_CP011971|PILER-CR,CRISPRCasFinder,CRT 32024-32058 35 NZ_CP016173 Bordetella flabilis strain AU10664 plasmid unnamed1, complete sequence 60792-60826 10 0.714
NZ_CP011971_1 1.20|33280|34|NZ_CP011971|PILER-CR,CRISPRCasFinder,CRT 33280-33313 34 MK279857 Mycobacterium phage IronMan, complete genome 1125-1158 10 0.706
NZ_CP011971_1 1.6|32357|34|NZ_CP011971|PILER-CR,CRISPRCasFinder,CRT 32357-32390 34 NZ_CP048288 Paenibacillus sp. 14171R-81 plasmid unnamed2 78712-78745 11 0.676

1. spacer 1.20|33280|34|NZ_CP011971|PILER-CR,CRISPRCasFinder,CRT matches to NC_017957 (Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence) position: , mismatch: 9, identity: 0.735

tggcgcagccggtggagcgggat--caatcgctctg	CRISPR spacer
tggcgctggcggtggagcgggatcccgacggcct--	Protospacer
****** * **************  *.*. **..  

2. spacer 1.1|32024|35|NZ_CP011971|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016173 (Bordetella flabilis strain AU10664 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.714

gcaccgacctcatcgatcttggcttgcaggtcggc	CRISPR spacer
ctcttcaggtcttcgatcttgccttgcaggtcggc	Protospacer
 . .. *  ** ********* *************

3. spacer 1.20|33280|34|NZ_CP011971|PILER-CR,CRISPRCasFinder,CRT matches to MK279857 (Mycobacterium phage IronMan, complete genome) position: , mismatch: 10, identity: 0.706

tggcgcagccggtggagcgggatcaatcgctctg	CRISPR spacer
tggagcagccggtggagctggatctggaggcgta	Protospacer
*** ************** ***** .  * . *.

4. spacer 1.6|32357|34|NZ_CP011971|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048288 (Paenibacillus sp. 14171R-81 plasmid unnamed2) position: , mismatch: 11, identity: 0.676

catgtttaatgctgaggacgcctccaaggctgct	CRISPR spacer
agctgaagacgctgaggccgccgccaaggctgct	Protospacer
 ..    .*.******* **** ***********

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1477251 : 1486667 8 Klosneuvirus(33.33%) NA NA
DBSCAN-SWA_2 1917331 : 1947214 34 uncultured_Caudovirales_phage(16.67%) capsid,tRNA,transposase,integrase,protease attL 1920953:1920969|attR 1945915:1945931
DBSCAN-SWA_3 1978930 : 1985023 7 Rhodococcus_phage(16.67%) NA NA
DBSCAN-SWA_4 2294913 : 2303943 10 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_5 2333323 : 2337146 6 Stx2-converting_phage(66.67%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage