CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP014643	Lysinibacillus sphaericus strain OT4b.25 chromosome, complete genome	3 crisprs	csa3,cas3,WYL,RT,c2c9_V-U4,DinG,DEDDh	0	0	8	0
NZ_CP014644	Lysinibacillus sphaericus strain OT4b.25 plasmid unnamed, complete sequence	1 crisprs	RT,cas7,cas8c,cas5	0	4	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014643_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014643_1

3599434-3599654

Orphan

Consensus_repeat	Method
TTTGAAATAAAGTTTAATTAAAA	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP014643_1

>merge|NZ_CP014643|1|3599434-3599654|CRISPRCasFinder
TTTGAAATAAAGTTTAATTAAAAACACCTTACAAACCCGTATTTTACGGTAAATAAGAAGAATCCATTTTGTGCTGGTTTAAAATAAAGTTTAATTAAAACCGTGCTACAAATGCTGATTTTACAATAGAAGAAACCCATCCATTTTGAAAAAAGATTAATCACAATGGATGGATTTAATTTTGTGAAGGAGTTATTTTTTATAAAAAAGTTTGATTAAAA

>NZ_CP014643|1|1|3599434-3599654|CRISPRCasFinder
TTTGAAATAAAGTTTAATTAAAA	ACACCTTACAAACCCGTATTTTACGGTAAATAAGAAGAATCCATTTTGTGCTGG
TTTAAAATAAAGTTTAATTAAAA	CCGTGCTACAAATGCTGATTTTACAATAGAAGAAACCCATCCA
TTTTGAAAAAAGATTAATCACAA	TGGATGGATTTAATTTTGTGAAGGAGTTATTT
TTTATAAAAAAGTTTGATTAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014643.1\|WP_012293845.1\|3589420_3591238_+\|oligoendopeptidase-F	unknown	unknown	gnl\|CDD\|341072
NZ_CP014643.1\|WP_012293824.1\|3608626_3609361_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|379263
NZ_CP014643.1\|WP_031419511.1\|3606458_3606779_-\|DUF3889-domain-containing-protein	unknown	unknown	gnl\|CDD\|372435
NZ_CP014643.1\|WP_080695181.1\|3609589_3610411_+\|squalene/phytoene-synthase-family-protein	unknown	unknown	gnl\|CDD\|224478
NZ_CP014643.1\|WP_012293821.1\|3610713_3611202_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|377294
NZ_CP014643.1\|WP_012293839.1\|3595071_3595818_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP014643.1\|WP_012293832.1\|3602169_3603180_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|236060
NZ_CP014643.1\|WP_051563215.1\|3597864_3598713_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173803
NZ_CP014643.1\|WP_036162670.1\|3604111_3605308_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341042
NZ_CP014643.1\|WP_012293843.1\|3592514_3592706_-\|zinc-finger-domain-containing-protein	unknown	unknown	gnl\|CDD\|378493
NZ_CP014643.1\|WP_012293828.1\|3605307_3605706_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP014643.1\|WP_031419526.1\|3593540_3594338_+\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270217
NZ_CP014643.1\|WP_036161262.1\|3597562_3597793_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014643.1\|WP_012293835.1\|3600402_3600792_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014643.1\|WP_031419509.1\|3607020_3607245_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014643.1\|WP_036161260.1\|3598726_3599287_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014643.1\|WP_012293844.1\|3591465_3592449_+\|SEC-C-domain-containing-protein	unknown	unknown	gnl\|CDD\|376935
NZ_CP014643.1\|WP_036161258.1\|3611363_3612590_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226582
NZ_CP014643.1\|WP_031419527.1\|3592896_3593289_+\|ribonuclease-HI-family-protein	unknown	unknown	gnl\|CDD\|260011
NZ_CP014643.1\|WP_031419525.1\|3594403_3595060_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836

Protein	Function_ID	Function_description	E-value
NZ_CP014643.1\|WP_012293845.1\|3589420_3591238_+\|oligoendopeptidase-F	gnl\|CDD\|341072	cd09609, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF). Peptidase family M3B oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and is similar to oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the Bacillus amyloliquefaciens PepF oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over-expressed from a multicopy plasmid.	0
NZ_CP014643.1\|WP_031419511.1\|3606458_3606779_-\|DUF3889-domain-containing-protein	gnl\|CDD\|372435	pfam13028, DUF3889, Protein of unknown function (DUF3889). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 110 amino acids in length. There are two completely conserved residues (A and Y) that may be functionally important.	3.94589e-29
NZ_CP014643.1\|WP_080695181.1\|3609589_3610411_+\|squalene/phytoene-synthase-family-protein	gnl\|CDD\|224478	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism].	3.11293e-29
NZ_CP014643.1\|WP_012293821.1\|3610713_3611202_-\|metal-dependent-hydrolase	gnl\|CDD\|377294	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase. YdjM is a family of putative LexA-binding proteins. Members are predicted to be membrane-bound metal-dependent hydrolases that may be acting as phospholipases. It is a member of the SOS network, that rescues cells from UV and other DNA-damage. Expression of YdjM is regulated by LexA.	3.37025e-23
NZ_CP014643.1\|WP_012293839.1\|3595071_3595818_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	2.67607e-134
NZ_CP014643.1\|WP_012293832.1\|3602169_3603180_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|236060	PRK07581, PRK07581, hypothetical protein; Validated.	0
NZ_CP014643.1\|WP_051563215.1\|3597864_3598713_+\|S8-family-serine-peptidase	gnl\|CDD\|173803	cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	3.63882e-47
NZ_CP014643.1\|WP_036162670.1\|3604111_3605308_-\|MFS-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.25827e-81
NZ_CP014643.1\|WP_012293843.1\|3592514_3592706_-\|zinc-finger-domain-containing-protein	gnl\|CDD\|378493	pfam10782, zf-C2HCIx2C, Zinc-finger. This bacterial family of proteins is a zinc-finger domain of the C2HC type with an additional cysteine.	2.10345e-22
NZ_CP014643.1\|WP_012293828.1\|3605307_3605706_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.82965e-25
NZ_CP014643.1\|WP_031419526.1\|3593540_3594338_+\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270217	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily. This subfamily includes periplasmic binding domain of ATP-binding cassette transporter-like systems that serve as initial receptors in the ABC transport of amino acids and their derivatives in eubacteria. After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically-located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The Abp proteins belong to the PBPI superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.16192e-113
NZ_CP014643.1\|WP_012293824.1\|3608626_3609361_-\|SDR-family-oxidoreductase	gnl\|CDD\|379263	pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase.	2.83016e-83
NZ_CP014643.1\|WP_012293844.1\|3591465_3592449_+\|SEC-C-domain-containing-protein	gnl\|CDD\|376935	pfam02810, SEC-C, SEC-C motif. The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.	3.6762e-12
NZ_CP014643.1\|WP_036161258.1\|3611363_3612590_+\|hypothetical-protein	gnl\|CDD\|226582	COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport and metabolism].	9.10338e-86
NZ_CP014643.1\|WP_031419527.1\|3592896_3593289_+\|ribonuclease-HI-family-protein	gnl\|CDD\|260011	cd09279, RNase_HI_like, RNAse HI family that includes archaeal, some bacterial as well as plant RNase HI. Ribonuclease H (RNase H) is classified into two evolutionarily unrelated families, type 1 (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type 2 (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner. RNase H is involved in DNA replication, repair and transcription. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes and most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite the lack of amino acid sequence homology, type 1 and type 2 RNase H share a main-chain fold and steric configurations of the four acidic active-site (DEDD) residues and have the same catalytic mechanism and functions in cells. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. Most archaeal genomes contain only type 2 RNase H (RNase HII); however, a few contain RNase HI as well. Although archaeal RNase HI sequences conserve the DEDD active-site motif, they lack other common features important for catalytic function, such as the basic protrusion region. Archaeal RNase HI homologs are more closely related to retroviral RNase HI than bacterial and eukaryotic type I RNase H in enzymatic properties.	3.77189e-52
NZ_CP014643.1\|WP_031419525.1\|3594403_3595060_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.91768e-70

>NZ_CP014643.1|WP_036161260.1|3598726_3599287_+|hypothetical-protein
MIKKMFKLVPLLILTLLFSAIASPISKANEVAAKDDAINNSTYYSVKTHEIVLFEEEALSLNPYLENQELNYVKNYLKNLSDEEIDEILIQNGYNLDDIKIDTELGHANIVWFVPIVVGAIIVAGGIIFSALYFSHKEKMTLIDKCYANGGYPEIDSKDKAGAKGTTDGGAATKAGGYKFECKKKK
>NZ_CP014643.1|WP_051563215.1|3597864_3598713_+|S8-family-serine-peptidase
MKSRLILMCFISLFFLNACTNNENKDSWNLKIQNVGNYSKEDGDKKIKIAILDSGINKRHFAKNLITKSYNVITNENKTNDEFDHGTKIASIIIDEKIGINTNVELFDIQVINNKGQTTINNVCDGISKAIEYEADVINMSLGFNTNNKQLKECIDKAHKKNIILVASSGDTMSDISDYPAEYKNVISVAAIDKNKELFGFSSTGKIDFFAPGVDVIAKNNKGNYIRTEGSSIASANFTGVLSIYLNKNIDKKEIYLQDNVEFFNFNGRVINILIFNKNTNK
>NZ_CP014643.1|WP_036161262.1|3597562_3597793_-|hypothetical-protein
MKNVNGDYNYIQIAIIIVFTLLLVFAILIAVKSYFNNKEIGLLSSGCLKNDGEYELVITNKLTQSYEFSCNEKEEQ
>NZ_CP014643.1|WP_012293839.1|3595071_3595818_+|amino-acid-ABC-transporter-ATP-binding-protein
MALMAVTNLKKSFNQVEVLKQISFSVEKNDVIAVIGPSGSGKSTMLRSLIHLEEIDGGSILVDGDYLVQDGVYAKPQEIKNLTAKMGMVFQHFNLFPHLTVQQNLEMAPRLLKQESAEAISSRCLDLLKKIGLSEKANAYPANLSGGQKQRVAIARALMMNPQILLFDEPTSALDPELTGEVLKVMKSLAEDQMTMIVVTHEMGFAREVANKVVFMDDGQIIESDHPDNFFTNPQNDRTKAFLQKNLK
>NZ_CP014643.1|WP_031419525.1|3594403_3595060_+|amino-acid-ABC-transporter-permease
MTDYWQTMIWPMLEGAKMTVILFFIAILISIPFGFLLTLAVKSRIKPLSWLAHTYIYIMRGTPLLLQLLLICFGLPMLPVIGEYLVLDRFVAACLGFILNYAAYFAEIFRGGLLAIDKGQYEAAQVLGLSKWQTTTRVILPQMFRVALPALSNESVTLIKDTALLYAVAVPELLHFAQTAVNRDFTIVPFFIAGAIYLIMTLILTVFFKWLEKRFKFE
>NZ_CP014643.1|WP_031419526.1|3593540_3594338_+|amino-acid-ABC-transporter-substrate-binding-protein
MKRIITLVMMLTAVIVLAACGTSKEKSTEKDPSSADQEKIIIGIDDKFAPMGFRDDKNEIVGFDIDLARAAAEHMGVEAEFQPIDWKTKEAELLSGRIDLIWNGYTITDERKEKVLFTKPYLENSQVVMTKADSKIVKLTDLAGTEVGIQSLSSAADALNGNPIHKEIKTITEFSDNVLALSDLKTGRVDAVVIDAVVAEYYMTQEPDTFKLLEESLAPEQYGIGVKPGNEALLEKLQAALDKMNEDGTAADISTKWFGEDKVLK
>NZ_CP014643.1|WP_031419527.1|3592896_3593289_+|ribonuclease-HI-family-protein
MLEVYIDAASAGNPGPSGIGIFIKGEGQHIQISEYIGETNNHIAEFTALVRGLEEAQKLSSTLVSVRSDSKIVVASMEKEYVKNEEFKPFLEKALSLSNTFDLFFIKWVPDSQNKAADALARKAIQNNNH
>NZ_CP014643.1|WP_012293843.1|3592514_3592706_-|zinc-finger-domain-containing-protein
MDKVTVMKDIDELHDTYCADCLVIQQLRKERGKPGAHRFCIEACSIGEKLQFLGEELLKVYSK
>NZ_CP014643.1|WP_012293844.1|3591465_3592449_+|SEC-C-domain-containing-protein
MVKRNDPCPCGSGKKYKKCCEGKQQVTVETVQIEELERVLQTFYLEYPERKDVRAYIEHVGTWQPKLESVLQRELIEAIALDDFFFHQEPSIWKSYLKKTKKKAVRPSTVKVLEDWSHPALFIGTVSVVEENYFKASHLLTNEELYIRRENDKPIPEGMHVFAFILPDGTKKLSHYLAVSTLIFFPEDHLKVFEEFKKNFEASEKKVGAFLKEEHLAFWELLVSNGYKGEEFTNFESTVLSQVKEFLEQNDRETAPMLELLEDYLIEGQPTARKEAAIVAGAIRYGQEKELFESLSMTVKEIAATFDISASSLTKYYQDLNSYVETK
>NZ_CP014643.1|WP_012293845.1|3589420_3591238_+|oligoendopeptidase-F
MEVLPLRKDIAVEETWDLTDLLKNDADFEPTLAQLVEEAISFEQTYKGTITDAQKVIDVLTAFENLQKSIVPIGTYASLNLQADRTDDVAQMRAAKFSTAIGKISSALSFVRSELLALDEAVLQEAATLSPLYKHYLEELLKRKPHQLHPEVEKALAAFSSTFDAPYETYNTTKLVDMNFGEFEANGEKHPLSFVLYENDWEFEANTEVRRAAFKAFSSKLSDYQHTTAQVYNTHIQQEKTMADLRGFDSIFDYLLFDQDVDRSLYNRQIDLISKELAPHMRRYAKLIQKANGIEHMTFADLKIALDAAYDPKLSMDEAKEYVDKALAIMGEDYNHLIDRAFKERWIDYAPNKGKSTGAFCSSPYGSHPYILMSWNERMNEVFTLIHELGHAGHFANTHAHQSYFNSRPSLYFIEAPSTMNEMLLANYLLTHNEDVRFKRWVISNIVSKTYYHNFVTHLLEAAYQRKVYELVDAGESVNANILNQLKRSVLEDFWGDAVDITEGVELTWMRQPHYYMGLYPYTYSAGLTISTQVSQRILKEGDAAVEEWLAVLQAGGTKSPVELAQMAGVDITTDQPLRDTIAYIGHLVDELERLTLEIEAVQQS
>NZ_CP014643.1|WP_012293835.1|3600402_3600792_-|hypothetical-protein
MLRKIIIISFALIFLCVGCSNDTKKIILEMADENGDFKESLEILDKDQVSIINKILTKVKWKEKSKESFGLLKFRMSFDFIDPDKELKSSYYLIYVNSKEQVTLVENDMKYTKLSKEESKELLEILANK
>NZ_CP014643.1|WP_012293832.1|3602169_3603180_+|alpha/beta-fold-hydrolase
MKDYKLYELGDIQLQSGDILPNAVLAYQTYGTLNAEKNNAIVYPTWFAGLHTDNEWLIGTGKALDPEKYFIIIPNMLGNGLSSSPSNTPAPYHQANFPLISIYDNVRLQHQLVTQKFGISKIALVVGWSLGAVQTFQWGASYPEMVERIAPFGGTAMTRPHAKVVFEGMIAALQADSNWKNGFYTEQPKEGLAAMGRVYAAWGFSQAYYLEQLYQQEGYETLEEYLVDYWDQVFLSFDANDLISMLRTGITGNISANSTYDGDFELALSKITARALVMPGSTDLFFPPEDNNYDALHMPNARFLPIESKWGHCAGIGQHEPDSEFIDKNLKMLLLE
>NZ_CP014643.1|WP_036162670.1|3604111_3605308_-|MFS-transporter
MNLQQGKNTQIWTKRFISLFLTNISVFFVFYGLVTTLPLYAIGELHQTDKEAGLLLSGFLLSAIIVRPFSGKLLDVFGKKKLLVLSIAGYFACTVLYLFIHPFGLLLGLRFIQGIFFSIITTAAGSLAADIVPAKRKGAGLGYFTMSTNLAVVIGPFIGLLLIQYSTFNVLFIVMSFCILAGGILALTVHTDDLPQPAHKGKLTFTFHDLFERKALPVAAIASLVAFSYASVLSFLSVYAQQKGLMAVASLFYAVFAAAMLITRPYTGKLYDTKGPQFVIIPGIISFAIGLIMLAFVEGPMLFLSAAIFVGFGYGAVTTSLQALAVQSTAIQRSGYATATYFTMFDLGIALGSYILGMVAVQAGYASVYLSGAGLLGVVFIIYLLRLAKMKPKKVVNI
>NZ_CP014643.1|WP_012293828.1|3605307_3605706_-|MarR-family-transcriptional-regulator
MNPIFHALFQKSRYLTNCLNEVLKQHQLYSSQWTILYCLHKNGPMTLTQIWKYLNVEAPSITRAITRLETLGWVERLDGEDKREKIVTLTAQANDRLPAITETILAFEEEMVGSLTAEEQQQFMILLEKMKG
>NZ_CP014643.1|WP_031419511.1|3606458_3606779_-|DUF3889-domain-containing-protein
MKNVYVMLGLLFAVPLHIPEIVLAQQETPAYAKWGKLAVEEVKGKYPHAKIVDYLHEGKEVHGASTIEKFKLWLKQPDKEFGVHVRISYLTSTQEVEKIELQESQS
>NZ_CP014643.1|WP_031419509.1|3607020_3607245_-|hypothetical-protein
MGNRNNKNSKKTMNARTHNPFGTYKSKDLDRSNSNNNNPNDNLNEEFAAEFDAKAKNKNNKTNHDKNQQSNKKN
>NZ_CP014643.1|WP_012293824.1|3608626_3609361_-|SDR-family-oxidoreductase
MGRLNNKITMITGGASGMGAAMAKLFAQEGATVIAADINEENLAKISELENVEGMKLDVSSDENWAEVTKAIVEKYGRIDILINNAGISSEKGPDQITQADWSIMHNINAFGPFLGIKHASKYMKEAGKGSIVNTSSYTAIIGAGFNAYTASKGSLRAIARAAASELGAFNVRVNTVFPGVIETPMTAKLSEAKEAMDMLVKTTPMGRLGQPEEVANAILFLASDEASYITGAELVIDGGYSAR
>NZ_CP014643.1|WP_080695181.1|3609589_3610411_+|squalene/phytoene-synthase-family-protein
MKDQKRLYKEAMQVLKDTSRTFYIPITFLKNDLKVSVAAAYLAMRAIDEIEDHEQLSNDVKFDLLSATSDLLKDTFNNEAYQELVAPYAAQLPEVTLRLADWLAFCPEESRKIVQASTSEMAFGMAKWAKANWQVHTREDLDDYTYYVAGLVGTMLSELWAWGADIQTDRDLAIGYGRGLQAVNILRNQHEDMDERGVSFVPDGWTREDLFTYAEENLAKADLYMKDINKRTVLLFCRLPLALAHKTLKAMQDGREKITRTEVEQTVEEVQAD
>NZ_CP014643.1|WP_012293821.1|3610713_3611202_-|metal-dependent-hydrolase
MQGNTHMVGGITASLAFAQISNDNPLVLVGAGVIGALLPDICHGGSKIGRKLPIISKIVNSLFGHRSFTHSLLFLFLIGMLLHTFIPYKSVTIGILLGMASHVLLDMGTKKGVKLFFPVSISVRLPLTTKTGSKVEKIVFTLLTMLSVFFSYEIIVQLLATN
>NZ_CP014643.1|WP_036161258.1|3611363_3612590_+|hypothetical-protein
MKAYRGLLFIILVMGSSACLWYFAIPLAPIHPLNKLAHIIGGLAITGLFLVFLFSTRMKLLERWFNGLGRLNFYHKVLAMFSLGSIMIHGQLQKMVPDQELPQTSFREWAKELGELGQYGFIILIALAFLAKFLKYEHWRWLHRFLLLPYTLGIYHTYFSSEYDLLQPSALGIFTALTTTIGFMSALYMMTMYQDMFFRYNGSISNIQKLNIHVIELELTLTKKLHYRPGQFIFLKIFQEGIEKAPHPFTISGGDGEKIRVTIKAVGDFTKQVYKQIQLNTPVAIDGPFGHFDFAKGANQQLWVAGGIGITPFIAYLQTKPTKKIDLYYSFHGVDNMVYKDFLLNYAQSNDKFTVTFIDTTEQDRLSFDRMTIPAHTSIYLCGPEKMIKHFKSSAPTSHIEWEAFKLR

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Crispr_ID: NZ_CP014643_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014643_2

3701520-3701581

Unclear

Consensus_repeat	Method
AATGGCAACAACGGTGGCAATAA	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP014643_2

>merge|NZ_CP014643|2|3701520-3701581|CRISPRCasFinder
AACGGCAACGGAAATGGCAACAACGGTGGCAATAATAATAATGGCAATGGGCATGGGAATAA

>NZ_CP014643|2|2|3701520-3701581|CRISPRCasFinder
AACGGCAACGGAAATGGCAACAA	CGGTGGCAATAATAAT
AATGGCAATGGGCATGGGAATAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014643.1\|WP_012293750.1\|3693322_3693808_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP014643.1\|WP_012293754.1\|3687006_3691656_-\|cell-surface-glycoprotein-2	unknown	unknown	gnl\|CDD\|378939
NZ_CP014643.1\|WP_012293736.1\|3710794_3712042_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP014643.1\|WP_012293744.1\|3701757_3702072_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014643.1\|WP_012293740.1\|3706083_3706566_-\|DUF5590-domain-containg-protein	unknown	unknown	gnl\|CDD\|227656
NZ_CP014643.1\|WP_008176489.1\|3697784_3697979_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014643.1\|WP_012293747.1\|3697183_3697567_-\|YppE-family-protein	unknown	unknown	gnl\|CDD\|378052
NZ_CP014643.1\|WP_036161224.1\|3702743_3703472_-\|DnaD-domain-containing-protein	unknown	unknown	gnl\|CDD\|226445
NZ_CP014643.1\|WP_012293741.1\|3704873_3706067_-\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|235596
NZ_CP014643.1\|WP_012293738.1\|3708619_3710467_+\|multicopper-oxidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|259936
NZ_CP014643.1\|WP_012293751.1\|3692756_3693281_-\|phage-tail-protein	unknown	unknown	gnl\|CDD\|227020
NZ_CP014643.1\|WP_031419402.1\|3692236_3692731_-\|phage-tail-protein	unknown	unknown	gnl\|CDD\|227020
NZ_CP014643.1\|WP_012293739.1\|3706898_3708332_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP014643.1\|WP_012293743.1\|3702068_3702731_-\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255
NZ_CP014643.1\|WP_036161220.1\|3703549_3704845_-\|asparagine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235176
NZ_CP014643.1\|WP_012293748.1\|3694935_3697209_-\|DEAD/DEAH-box-helicase	cas3	mkCas0139_cas3_CAS-I	gnl\|CDD\|224126
NZ_CP014643.1\|WP_012293735.1\|3712543_3712756_-\|DUF3955-domain-containing-protein	unknown	unknown	gnl\|CDD\|379038
NZ_CP014643.1\|WP_012293753.1\|3691680_3692217_-\|phage-tail-protein	unknown	unknown	gnl\|CDD\|227020
NZ_CP014643.1\|WP_099806310.1\|3694310_3694691_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014643.1\|WP_012293746.1\|3698359_3699004_+\|Holliday-junction-resolvase-RecU	unknown	unknown	gnl\|CDD\|235015

Protein	Function_ID	Function_description	E-value
NZ_CP014643.1\|WP_012293750.1\|3693322_3693808_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.09115e-10
NZ_CP014643.1\|WP_012293754.1\|3687006_3691656_-\|cell-surface-glycoprotein-2	gnl\|CDD\|378939	pfam12733, Cadherin-like, Cadherin-like beta sandwich domain. This domain is found in several bacterial, metazoan and chlorophyte algal proteins. A profile-profile comparison recovered the cadherin domain and a comparison of the predicted structure of this domain with the crystal structure of the cadherin showed a congruent seven stranded secondary structure. The domain is widespread in bacteria and seen in the firmicutes, actinobacteria, certain proteobacteria, bacteroides and chlamydiae with an expansion in Clostridium. In contrast, it is limited in its distribution in eukaryotes suggesting that it was derived through lateral transfer from bacteria. In prokaryotes, this domain is widely fused to other domains such as FNIII (Fibronectin Type III), TIG, SLH (S-layer homology), discoidin, cell-wall-binding repeat domain and alpha-amylase-like glycohydrolases. These associations are suggestive of a carbohydrate-binding function for this cadherin-like domain. In animal proteins it is associated with an ATP-grasp domain.	5.46903e-16
NZ_CP014643.1\|WP_012293748.1\|3694935_3697209_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|224126	COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only].	0
NZ_CP014643.1\|WP_036161220.1\|3703549_3704845_-\|asparagine--tRNA-ligase	gnl\|CDD\|235176	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.	0
NZ_CP014643.1\|WP_012293741.1\|3704873_3706067_-\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|235596	PRK05764, PRK05764, aspartate aminotransferase; Provisional.	0
NZ_CP014643.1\|WP_012293738.1\|3708619_3710467_+\|multicopper-oxidase-domain-containing-protein	gnl\|CDD\|259936	cd13868, CuRO_2_CotA_like, The second Cupredoxin domain of bacterial laccases including CotA, a bacterial endospore coat component. CotA protein is an abundant component of the outer coat layer in bacterial endospore coat and it is required for spore resistance against hydrogen peroxide and UV light. Laccase is composed of three cupredoxin-like domains and includes one mononuclear and one trinuclear copper center. It is a member of the multicopper oxidase (MCO) family, which couples the oxidation of a substrate with a four-electron reduction of molecular oxygen to water. MCOs oxidize their substrate by accepting electrons at a mononuclear copper center and transferring them to the active site trinuclear copper center. The cupredoxin domain 2 of 3-domain MCOs has lost the ability to bind copper.	1.99489e-77
NZ_CP014643.1\|WP_012293751.1\|3692756_3693281_-\|phage-tail-protein	gnl\|CDD\|227020	COG4675, MdpB, Microcystin-dependent protein [Function unknown].	1.99398e-57
NZ_CP014643.1\|WP_031419402.1\|3692236_3692731_-\|phage-tail-protein	gnl\|CDD\|227020	COG4675, MdpB, Microcystin-dependent protein [Function unknown].	4.87993e-62
NZ_CP014643.1\|WP_012293739.1\|3706898_3708332_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.35189e-42
NZ_CP014643.1\|WP_012293740.1\|3706083_3706566_-\|DUF5590-domain-containg-protein	gnl\|CDD\|227656	COG5353, COG5353, Uncharacterized protein conserved in bacteria [Function unknown].	1.39182e-29
NZ_CP014643.1\|WP_012293743.1\|3702068_3702731_-\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	2.60137e-106
NZ_CP014643.1\|WP_012293736.1\|3710794_3712042_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.64038e-54
NZ_CP014643.1\|WP_012293747.1\|3697183_3697567_-\|YppE-family-protein	gnl\|CDD\|378052	pfam08807, DUF1798, Bacterial domain of unknown function (DUF1798). This domain is found in many hypothetical proteins. The structure of one of the proteins in this family has been solved and it adopts an all alpha helical fold.	1.16697e-34
NZ_CP014643.1\|WP_012293735.1\|3712543_3712756_-\|DUF3955-domain-containing-protein	gnl\|CDD\|379038	pfam13127, DUF3955, Protein of unknown function (DUF3955). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 68 and 87 amino acids in length. There are two completely conserved residues (G and E) that may be functionally important.	1.24234e-09
NZ_CP014643.1\|WP_012293753.1\|3691680_3692217_-\|phage-tail-protein	gnl\|CDD\|227020	COG4675, MdpB, Microcystin-dependent protein [Function unknown].	4.94403e-60
NZ_CP014643.1\|WP_036161224.1\|3702743_3703472_-\|DnaD-domain-containing-protein	gnl\|CDD\|226445	COG3935, DnaD, Putative primosome component and related proteins [DNA replication, recombination, and repair].	3.52023e-40
NZ_CP014643.1\|WP_012293746.1\|3698359_3699004_+\|Holliday-junction-resolvase-RecU	gnl\|CDD\|235015	PRK02234, recU, Holliday junction-specific endonuclease; Reviewed.	1.39464e-104

>NZ_CP014643.1|WP_012293746.1|3698359_3699004_+|Holliday-junction-resolvase-RecU
MTIRYPNGKLYTPNTSVQKTEKKSKSKDLSFSNRGKTLEDEINEANDYYIKRRLAIIHKKPVPVQIVKVEYPSRSAAVIREAYFRTPSTTDYNGVWNGHYIDFDAKETASKTSFPLKNIHEHQMTHMQQVTEQNGVAFIIVRFSAFERYFIVPYEVLQKAWKAMESGNRKSIPFSTIVEEAYEIPTSYYPRIDYLPIIQQLIDAKCYRFESEEK
>NZ_CP014643.1|WP_008176489.1|3697784_3697979_-|hypothetical-protein
MNKLEQLVAQLDLVNQLLFTRVSLENNAQNMHFFLQLKAVSQKVSLAEKNWQVKNACSPISSEK
>NZ_CP014643.1|WP_012293747.1|3697183_3697567_-|YppE-family-protein
MLVIQQTSKLLDECDRCVSRFWQMREEDRTPDFFQEVKPHADKIHQLLKEWQQEANKWIQENRPKYMHTQQIASTVESMEQFVVQSYYKETSKKRFLDAIHSTSFTMKNFERLVKEEAVNAIEETND
>NZ_CP014643.1|WP_012293748.1|3694935_3697209_-|DEAD/DEAH-box-helicase
MLSKKRTISELLHEWRYDEELKERILHWQTLEARPASYASFPENLHPSLVKALKARGIEQLYTHQREAFDLAQSGTSFTAVTPTASGKSYCYHLPVLQKIIEDNNARAIYLFPTKALAQDQKNDLNELIEQSGEEILSYTYDGDTAPGIRQKVRKAGHIVMTNPDMLHSGILPHHTKWVSLFENLQYIVIDELHTYKGVFGSHVAHVIRRLKRICEFYGSNPVFICTSATIKNPKELAELLTNESHALIADSGAPVGKKTFLFYNPPIIHKTFGVRRSAVLEVSDLAKRLYIAGIQSIIFAKSRVRVEMIVTYLKELTRNKLLDESVRGYRGGYLPSERRVIEKGLRDGTIQTVVSTNALELGVDIGQLQACIMTGYPGNIASAWQQAGRAGRRQDEALIIYVAQSTALDQYVVNHPLFLLGSAPEEARIYPENMLILMDHLKCAAFELPFSIEDTYGEYDIQELLDYLAEEGVVFKTSDKWHWMSDRFPAHDISLRSASQENVVIINLSIPAQTKVIGEMDRHSAMTLLHEEAIYLHQGIQFQVEQLDWEEKKAYVREVDVDYYTDANLAVEMKVLEEDRSRGYNGGTISFGDVGLVAQATIFKKIRFGTHDNIGSGPIHLPPDEMHTSASWLSLHLTEQWSEAELTEVMIGVAYAMNAFIPLFIQCDSSDVAVVPQVKASHNELPTFFVYDKYPGGIGLSEKVYDLWEDLLMKTLEHVSKCPCESGCPSCIGAQDSLQEGKKRVIILLQRLNQIN
>NZ_CP014643.1|WP_099806310.1|3694310_3694691_+|hypothetical-protein
MTFLGGNALFKNFREELKKEWKNTTEDLEKEVFKVWQLEYKGHIIRIVNAVTEEVLYINNEVVDKKSRDSMFKQVYPFVKLKGEITETNGTVSTVKVKIGGLLSLNIVVKVNGTILLHEKHKISID
>NZ_CP014643.1|WP_012293750.1|3693322_3693808_-|GNAT-family-N-acetyltransferase
MKWWWNMVQTRNVVSQDDAFLYELYISTRKNEFSMLAVDEQQLHALLLIQYEAQKRFYQQNFPQAKHEIIFHEGLEIGRIMTECKSGNIHLIDISLLPDFRGKGYGTKLLKQLQNSAASQNLSVTLHVWHGNPARRLYERCGFYVTEDISPYIAMRFESLG
>NZ_CP014643.1|WP_012293751.1|3692756_3693281_-|phage-tail-protein
MSESYLGEIRMFAGNFAPQGWALCNGQLLSISENEALFALLGTTYGGDGQTTFKLPDLMGRVPIHVSPQYGIGVAGGTELITLTANQLPNHTHTVQAATAVGNTSTPTNKLWATTSGYSNYSNDKDGAGNPLTPVTMNANASSVVGGNQSHDNMMPTVAISFIISLYGVFPTQP
>NZ_CP014643.1|WP_031419402.1|3692236_3692731_-|phage-tail-protein
MAEPYLGEVRLFAMNYAPRYWLSCEGQLLPINQYQALYALLGTVYGGDGVKTFALPDLRGRVPIHVGPSLPLGTKAGEVTHSLTVNEIPQHTHQVYGSSNLASVPSPKGNVWAQKDNLYADGPTVTMNSAALSSAGGGQAHNNMQPYLAVHFCIATQGIFPTRN
>NZ_CP014643.1|WP_012293753.1|3691680_3692217_-|phage-tail-protein
MADAYIGEIRIFSGNFAPKGWALCNGQLMNIQQNTALYSILGVQYGGDGKTTFALPNLMASAPMNQGSGMGLTPRKVGEAVGTQTVTLLESQIPAHSHTPVAIQSVGTSGNPIGLFWAEGVGAGRPPKQPHLYDTNLDVQMNTQALGLTGGSQPHNNMQPFLVMNYIICLQGEFPSRG
>NZ_CP014643.1|WP_012293754.1|3687006_3691656_-|cell-surface-glycoprotein-2
MNRSQAFKNGRNGIKMVRKKMRFYVRILIVLILMMASIGYIPAIEVEAAVNGTADGTYDFGGSVSGDNSAGAGFSTFSDKFIISNGFVVDPATSQLYTQNYTPKAQETLIIKAEGGNICKTFTFKDLGISIVPDLPKLTFSKLSLVVKDTNGATLGSHSIANKEISGNGMIHQLSTLLNNGNEFDYNGAESLEITWQFDFPTNDPNTEPSNLNFDNITIANVSDSFSDTQTPTISNKTITSSNVSTTGVTLGWEKATDDVTLQGDLEYRVYQSSSNNMDTVSDIEVNGLALGTGFSKDLEVFNVTGLLPSTTYYFNVIVKDAAGNKSAYTMKSVTTSIPANAPTVTTNTIPSNVTTTGATVGGYVTADGGAIVTERGIVYATTANPTTINSKITITGTTGTFTADLSGLNPNTTYHYRAYATNSVGTSYGSDQTFTTGSLSNNADLSNLTLSTGTLSPAFASGTTDYTANVASNVGNIQVTPTLADSYATLTLNGAAVTSGIGKDIALNVGLNTITIIVTAQNQTTKIYTITVTRAAPTYTIDTISNQMFPALTAGYTSGTQETKTLTIANTGTGSLANVSVAISGANADDFDITQPSATSLPSAGNTIFTVRAKDGLAVGTYTATVTVSATNLTPVTFTVMQVVQAAPTYTIDTISNQMFPALTAGYTNGTQETKTLTIANTGTGSLANVSVAISGANADDFDITQPSATSLPSAGNTIFTVRAKDDLAVGTYTATVTVSATNLTPVTFTVTQVVQAAPTYTIDTISNQMFPALTAGYTSGTQETKTLTIANTGTGSLANVSVAISGANADDFDITQPSATSLPSAGNTIFTVRAKDGLAVGTYTATVTVRATNLTPVTFTVTQVVQAAPTYTIDTISNQMFPALTAGYTSGTQETKTLTIANTGTGSLANVSVAISGANADDFDITQPSATSLPSAGNTIFTVRAKDGLAVGTYTATVTVSATNLTPVTFTVTQEVQANSVTAPDVPTNVLATPGDSYVRVSFDVPTNNGGSTITGYTVKVYVGGVEQPMLAKIGTLSPIIVTGLTNGTAYTFKVLATNIAGNSGESMASNVVTPVAPTAPGQPTIPVPTPSSPSSPTTSTKIQVGLEIDGDNPLEKTTIEIERTKHANGEITDFVALTESSAKAAIEKAKQIDNNIVRIVLPDVNDEIDKVTVEVPKQSLQLLRENGLSLEIATENGLVTIPHSSMKGIEDNFYFRLVPVKKNSERQAIEERARVERVVHEALESNNVHVVARPMTIETNMPNRPVHVTLPLKGVKIPVNIVERKAFLKQLAMFIEHSDGEKKVVLPEVVTMVKGELGLRFTVEKFSTFTIIQVNRTKPPLEVNKHEAYINGFLDGTFGPEKNVTRGQVATMIARILGYTDGTVDTTPLFRDIPSDYYAAGPIAFIKERGIMNGDIYGNFRASDNITRAEMATVVANFKQLHIEENQNITFKDTKGHWAQWIIEAIRTAGIINGQSDGSFAPNEPVTRAQAIVMMNRMLERGPLQGVTSPSFQDVKETHWAFEEIEEAAKTHTYVIDQDGNEKLSK
>NZ_CP014643.1|WP_012293744.1|3701757_3702072_-|hypothetical-protein
MNSEAIAKDQVDAWFAQWTTLQANIHEAHDARNGTAKGLMEEAIKLFEQLVQAAGDEVLPINGVERLAFIKAKPGQYACYRQLDELFKETKKRTARLRIQASKK
>NZ_CP014643.1|WP_012293743.1|3702068_3702731_-|endonuclease-III
MLTKKQWEHCLEEMDRMFPNAHCELVHDNAFELTIATLLSAQCTDVLVNKVTKTLFQKYKTPEDYLAVPLEELQQDIRSIGLYRNKAKNIQALCQRLLDEYNGEIPATREALVTLPGVGRKTANVVLSVAFDIPALAVDTHVERVSKRLGLCRWKDSVLEVEETIMKKTPMDKWSKTHHQLIFFGRYHCKAQNPGCHACPLLSDCREGQKRLKKGLVKEA
>NZ_CP014643.1|WP_036161224.1|3702743_3703472_-|DnaD-domain-containing-protein
MNANNHRLRTWTEQRMIPIPQLFFQFYKELNIEDEEALIVMHLLAFHMEGYDFPTPNDLKNRLTMPENELTSRLQRLMQKGFLEITRDVDTGGKLYEKYSVYPLWERIVQMIEMKEQQKSAITLQQEEGEIFRLFEEEMGRLLSPLELEKIGCWLDEDNHSPTLIKEALKEAVFAGKLSIRYIDRILLEWKKKNITTPQAAQKQSEQFREKQTFSRNPARTVQQDAQPTNKVPFYNWLEERE
>NZ_CP014643.1|WP_036161220.1|3703549_3704845_-|asparagine--tRNA-ligase
MKKIMIKDMPQHIGETVKIGAWLANKRSSGKIAFLQLRDGSGFVQGVVVKEEVGEEIFATAKGLTQETSMYITGEVKADERSSFGCELAVTGIEVLHTATDFPITPKEHGPEFLMDNRHLWLRSRKQHAIMKIRNEIIRATYEFFNNNGFTKMDPPILTGSSPEGTSELFHTKYFDEDAFLSQSGQLYMEAAAMALGKVFSFGPTFRAEKSKTRRHLIEFWMIEPEMAFVEFEENLEVQEQYVTHIVQSVLANCKLELERLERDTSKLENIKAPFPRISYDDAIKLLHEQGFDDIEWGDDFGAPHETAIANSFDKPVFITCYPVGIKPFYMQPHPDRDDVVLCADLIAPEGYGEIIGGSERIHDYDLLKSRLEEHNLSLDAYAWYLDLRKHGSVPHSGFGLGLERTVAWISGTEHIRETIPFPRLLNRLYP
>NZ_CP014643.1|WP_012293741.1|3704873_3706067_-|pyridoxal-phosphate-dependent-aminotransferase
MKNLLATRVKTLTPSSTLAITAKAKALKEQGIDVIGLGAGEPDFNTPQNILNAAIDSMEKGYTKYTPAGGLPVLKKAIIDKLQRDNNLSYQPNEVIVGVGAKHILYTLFQVILNEGDEVIIPIPYWVSYPEQVKLAGGVPVYVEGTREQSYKITADQLRAAVTDKTKAVIINSPSNPSGMIYSREELAELAAVAEEKDILIVSDEIYEKLVYNGIEHFSIAQLSDAVKARTIVVNGVAKSHSMTGWRIGYAAGDADIVKAMTDLASHSTSNATTTAQYATVEAYNGPQDAVEEMRQAFESRLEKIYPQVSAIPGFHVLKPQGAFYLLPDVAEAMAHTGYDSVDAFAADILTEANVAVIPGSGFGAPTTMRLSYATSLDLLEEAVRRIDTFVKSKWQD
>NZ_CP014643.1|WP_012293740.1|3706083_3706566_-|DUF5590-domain-containg-protein
MKNWLIFISVFIVSLSLVISILVLWKAEAPFRSIEEQAEQLALDAKALAIVSESYTYNGKHSYVTVFGVDEYGDKKAVFVPTNLDKDSMQEVLLEDGITEKQALSVFKNEGNVQKVLHMKLGYEEPGVVWEITYLNDHDKLNYVYIMFKDGDWWKRITNL
>NZ_CP014643.1|WP_012293739.1|3706898_3708332_-|GGDEF-domain-containing-protein
MELTLEELNKTIMEMRIKGFLTEALKLADQGLLVALEGKNYEIVLDLYYQKILVHHSLGDTLAIVSLIFEYEAICEKYGTSKDLMHYYLAMSLIYDMVGIREKTAEMTKQSIAFAQELQDFMMLVRCHNNLCYIEVEKGCTKEALQAGLLAREYNKTLYETQPDLARLLDIRINNNLADVYILEGDFLAGKALLDDSLTSSIISQHKPEKVAALFGYGFLYEKQQKLEEAVQYYQQAIDLAKSYGDKPIMKKVMRLLLNVLYQLNWRDEIFDVQKEYINLSEQMSVDNLLQQVLNLEFKRQKERLERKAHYDPLTGVLNRHFLDQELHEWLHAAKIAESYVCITVLDIDNFKLFNDRHGHLFGDRVLQLLANGLKEFLRDEDVKIIRYGGDEFIVCIRHPKKAYIKALVQNTHAHLLTLTLEKDQKSYPLKVSMGACINNQKNYYYNDLFEQADRCLYEAKDNGRATHILYELSSFE
>NZ_CP014643.1|WP_012293738.1|3708619_3710467_+|multicopper-oxidase-domain-containing-protein
MSLPINPSDPATIPKFVDALQKPVTAKPKYCRGQKKHDYYELVMMEGEHRFHKHFPNTLIWGYNGLYPGPTIEATKDKTIYVKYKNQLPLQHFLPVDFTLHAANDSQEVRTVTHLHGANVDWESDGHPEAWYTRDYRHTGPKFNKEIHEYTNHQPGTTMWYHDHAMALTRLNVYAGLAGFYLLRDALEERSNLPCGEYEYPILIQDKSFNEDGSLFYPDEPPFPVTVHPSITPGFVGNTIVVNGKLWPYLDVEPRKYRFRFLNGSNRRGYVISLSNEQSMIQIGTDGGFLSTPQAIQSVELLPAERTDVIIDFSACEGQEITLLNTDTDFIDEHTNVIMQFRVSLPLKYEDTSEVPERLAVTMDLHPHHAHIERQLPLTATTDEFGRPMLLLNNRMYHDPATEKPSLDSIEIWSFINTTPFIHPIHLHLIQFKILERRPFDLDLYQNEGIVSFTGPPEEPRDYERGWKDTVKVDAGKITKIIMHWKDHVGNYMWHCHFLEHEDHDMMRPILVMKDVHAVQQPHAEIEPSSHQEVTTTTTSTPTTNTSTTHHNESPVPLLNTSQIPSTEEEEIKESLVEESVHIGNNVQHRPILLFPTKSTPAGTSRPRRRGHRRF
>NZ_CP014643.1|WP_012293736.1|3710794_3712042_-|MFS-transporter
METYVKGKGFSKDFKILVFGQIISILGSALLRFALSLFVLDVTGRADLFAVLFAISSIPILLTPFGGALADRFNRRHLMVLFDAISCVVVLIFYITLWTEYHSVLGIGVVMVLLSIISAMYSPAVIASIPLLVKEQHLEQANGIVNGVQALAGVAAPVLGGILYGMLGIKILVLVSGLLFFFTAIVEMFLTIPFEKRDDDGQLVLTLFKDIKEGFKYVVKQSFILKCTILAAFLNLLFTPLFIVGVPIILRVTLNVSDSLYGIGMGMIDLATIFGALTMGYFAKKLKISRLYVWVLLTAILVIPMAIAVIPPMLQIGYYASYLLFIGSALVMAMMMTIISIYVMTLVQKETPNENLGKVMAIMMAVSQCMAPIGQMGYGLLFETFRVNIFIPILMICMMMLLLALLTNRLWRVHT
>NZ_CP014643.1|WP_012293735.1|3712543_3712756_-|DUF3955-domain-containing-protein
MKKYILASTPFILGLLSFLIFMIKGSSVASDGTLEEPFFLIPIGFLLLFIGVVCVVGLALISLIKKTQHI

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Crispr_ID: NZ_CP014643_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014643_3

3852017-3852146

Orphan

Consensus_repeat	Method
TTGCTTCTTCCGCTTTTTTTGCCTCTTCAGCTTTTTTCGCTGCCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014643_3

>merge|NZ_CP014643|3|3852017-3852146|CRISPRCasFinder
TTGCTTTAGTATTTTGTTTTGCTTCTTCCGCTTTTTTTGCCTCTTCAGCTTTTTTCGCTGCCTCGGCCTGTTGCTGAGCTATTCTTGCCTCCTCAGCTTTGCGAGCTTCTTCCGCTTTACTTGCTTCTTC

>NZ_CP014643|3|3|3852017-3852146|CRISPRCasFinder
TTGCTTTAGTATTTTGTTTTGCTTCTTCCGCTTTTTTTGCCTCTTC	AGCTTTTTTCGCTGCCTCGGCCTGTTGCTGAGCTATTC
TTGCCTCCTCAGCTTTGCGAGCTTCTTCCGCTTTACTTGCTTCTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014643.1\|WP_012293599.1\|3847720_3849262_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|223153
NZ_CP014643.1\|WP_012293601.1\|3845964_3846639_-\|intramembrane-metalloprotease-PrsW	unknown	unknown	gnl\|CDD\|225217
NZ_CP014643.1\|WP_031417965.1\|3843735_3845019_-\|sporulation-protein	unknown	unknown	gnl\|CDD\|131935
NZ_CP014643.1\|WP_012293587.1\|3860315_3860861_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP014643.1\|WP_036161145.1\|3854122_3855151_-\|ATP-dependent-DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|227291
NZ_CP014643.1\|WP_012293596.1\|3850962_3851718_-\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|277331
NZ_CP014643.1\|WP_012293588.1\|3859475_3860300_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|206779
NZ_CP014643.1\|WP_012293591.1\|3856383_3857166_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|236308
NZ_CP014643.1\|WP_012293589.1\|3857969_3859175_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882
NZ_CP014643.1\|WP_012293594.1\|3852679_3854122_-\|ATP-dependent-DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|223588
NZ_CP014643.1\|WP_012293604.1\|3842989_3843649_-\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|227868
NZ_CP014643.1\|WP_012293602.1\|3845034_3845868_-\|spore-cortex-lytic-enzyme	unknown	unknown	gnl\|CDD\|213747
NZ_CP014643.1\|WP_012293597.1\|3849883_3850849_-\|YpdA-family-putative-bacillithiol-disulfide-reductase	unknown	unknown	gnl\|CDD\|188533
NZ_CP014643.1\|WP_036161153.1\|3849266_3849827_-\|glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|376884
NZ_CP014643.1\|WP_012293590.1\|3857219_3857945_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_CP014643.1\|WP_004232564.1\|3855257_3855506_+\|ferredoxin	unknown	unknown	gnl\|CDD\|224064
NZ_CP014643.1\|WP_051563204.1\|3861241_3864043_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378188
NZ_CP014643.1\|WP_036161142.1\|3855640_3856234_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014643.1\|WP_012293605.1\|3842218_3842893_-\|(d)CMP-kinase	unknown	unknown	gnl\|CDD\|234579
NZ_CP014643.1\|WP_012293600.1\|3846723_3847692_+\|asparaginase	unknown	unknown	gnl\|CDD\|199208

Protein	Function_ID	Function_description	E-value
NZ_CP014643.1\|WP_012293599.1\|3847720_3849262_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|223153	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism].	4.64087e-40
NZ_CP014643.1\|WP_012293601.1\|3845964_3846639_-\|intramembrane-metalloprotease-PrsW	gnl\|CDD\|225217	COG2339, prsW, Membrane proteinase, regulator of anti-sigma factor [Posttranslational modification, protein turnover, chaperones].	1.03592e-33
NZ_CP014643.1\|WP_031417965.1\|3843735_3845019_-\|sporulation-protein	gnl\|CDD\|131935	TIGR02889, Sporulation_protein_YpeB, germination protein YpeB. Members of this family are YpeB, a protein usually encoded with the putative spore-cortex-lytic enzyme SleB and required, together with SleB, for normal germination. This family is retricted to endospore-forming species in the Firmicutes lineage of bacteria, and found in all such species to date except Clostridium perfringens. The matching phenotypes of mutants in SleB (called a lytic transglycosylase) and YpeB suggests that YpeB is necessary to allow SleB to function. [Cellular processes, Sporulation and germination].	1.06097e-34
NZ_CP014643.1\|WP_012293587.1\|3860315_3860861_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	1.1186e-36
NZ_CP014643.1\|WP_036161145.1\|3854122_3855151_-\|ATP-dependent-DNA-helicase-RecQ	gnl\|CDD\|227291	COG4955, COG4955, Uncharacterized protein conserved in bacteria [Function unknown].	7.73154e-67
NZ_CP014643.1\|WP_012293596.1\|3850962_3851718_-\|serine/threonine-protein-phosphatase	gnl\|CDD\|277331	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.73674e-34
NZ_CP014643.1\|WP_012293588.1\|3859475_3860300_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	6.61868e-24
NZ_CP014643.1\|WP_012293591.1\|3856383_3857166_+\|SDR-family-oxidoreductase	gnl\|CDD\|236308	PRK08594, PRK08594, enoyl-[acyl-carrier-protein] reductase FabI.	9.86616e-133
NZ_CP014643.1\|WP_012293589.1\|3857969_3859175_-\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.88239e-80
NZ_CP014643.1\|WP_012293594.1\|3852679_3854122_-\|ATP-dependent-DNA-helicase-RecQ	gnl\|CDD\|223588	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair].	1.27461e-141
NZ_CP014643.1\|WP_012293604.1\|3842989_3843649_-\|glycosyl-transferase	gnl\|CDD\|227868	COG5581, COG5581, c-di-GMP-binding protein [Signal transduction mechanisms].	1.11036e-31
NZ_CP014643.1\|WP_012293602.1\|3845034_3845868_-\|spore-cortex-lytic-enzyme	gnl\|CDD\|213747	TIGR02869, Spore_cortex-lytic_enzyme, spore cortex-lytic enzyme. Members of this protein family are the spore cortex-lytic enzyme SleB from Bacillus subtilis and other Gram-positive, endospore-forming bacterial species. This protein is stored in an inactive form in the spore and activated during germination. [Cellular processes, Sporulation and germination].	4.36889e-104
NZ_CP014643.1\|WP_012293597.1\|3849883_3850849_-\|YpdA-family-putative-bacillithiol-disulfide-reductase	gnl\|CDD\|188533	TIGR04018, thioredoxin_reductase, putative bacillithiol system oxidoreductase, YpdA family. Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP014643.1\|WP_036161153.1\|3849266_3849827_-\|glycerol-3-phosphate-acyltransferase	gnl\|CDD\|376884	pfam02660, G3P_acyltransf, Glycerol-3-phosphate acyltransferase. This family of enzymes catalyzes the transfer of an acyl group from acyl-ACP to glycerol-3-phosphate to form lysophosphatidic acid.	2.87454e-36
NZ_CP014643.1\|WP_012293590.1\|3857219_3857945_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	8.63341e-19
NZ_CP014643.1\|WP_004232564.1\|3855257_3855506_+\|ferredoxin	gnl\|CDD\|224064	COG1141, Fer, Ferredoxin [Energy production and conversion].	4.29606e-24
NZ_CP014643.1\|WP_051563204.1\|3861241_3864043_-\|hypothetical-protein	gnl\|CDD\|378188	pfam09479, Flg_new, Listeria-Bacteroides repeat domain (List_Bact_rpt). This model describes a conserved core region of about 43 residues, which occurs in at least two families of tandem repeats. These include 78-residue repeats which occur from 2 to 15 times in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats found in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few other bacteria.	2.4938e-17
NZ_CP014643.1\|WP_012293605.1\|3842218_3842893_-\|(d)CMP-kinase	gnl\|CDD\|234579	PRK00023, cmk, (d)CMP kinase.	1.99934e-112
NZ_CP014643.1\|WP_012293600.1\|3846723_3847692_+\|asparaginase	gnl\|CDD\|199208	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase. Asparaginases (amidohydrolases, E.C. 3.5.1.1) are enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases. This model represents type II L-asparaginases, which tend to be highly specific for asparagine and localized to the periplasm. They are potent antileukemic agents and have been used in the treatment of acute lymphoblastic leukemia (ALL), but not without severe side effects. Tumor cells appear to have a heightened dependence on exogenous L-aspartate, and depleting their surroundings of L-aspartate may starve cancerous ALL cells. Type II L-asparaginase acts as a tetramer, which is actually a dimer of two tightly bound dimers. A conserved threonine residue is thought to supply the nucleophile hydroxy-group that attacks the amide bond. Many bacterial L-asparaginases have both L-asparagine and L-glutamine hydrolysis activities, to a different degree, and some of them are annotated as asparaginase/glutaminase.	5.32103e-126

>NZ_CP014643.1|WP_012293596.1|3850962_3851718_-|serine/threonine-protein-phosphatase
MLYIGLLLIVVVVFLIYMLKVAHENNVLHHQLLLKGAPEKLRLFFISDVHLRKINKKMIAQLTGHFDAVIIGGDLADNRTPIPRIHENLQLLTSIGPTYFVWGNNDREVGEERLKSILQQHHIQIIVNDAVLLPAKNRFWLSAIEDTTVKEYSFEKAFEKVEEHDLVAFIAHNPGVFEKVRAKYRADLMMGGHLHGGQIRFGPYGVHPNGSYRERDGVMTLVSNGYGTTLLPMRLGAKPQCHIIDIDISSK
>NZ_CP014643.1|WP_012293597.1|3849883_3850849_-|YpdA-family-putative-bacillithiol-disulfide-reductase
MQQADAIIVGGGPCGLAAAIALQNIGLKPIVIEKGNIVNAIYHYPTHQTFFSTSERLGIGDVPFIIEGRKPKRNQALVYYREVVRLKNIQVNRFEKVQSVVKNNGMFTVTSDKDSYETPYVIIATGYYDHPNYLNINGEQLPKVFHYFKEGHEFFDTDVLVIGGKNSAIDAALELNKAGARVTVAYRGHEYSPSIKPWVLPEFEGVVKTGEVDMNFNTNVLEIREHEVVLAIDGHEKVMKNDFVFAMTGYHPDHSFIKAMGVNIDEETGRPYFTPETMETNVEGLFIAGVIAAGNNANEIFIENGRFHGDCIAQTIAQRKG
>NZ_CP014643.1|WP_036161153.1|3849266_3849827_-|glycerol-3-phosphate-acyltransferase
MIGLYLLFSYLIGNFMTAFFVGKIYGVNLQEERSKNLGARNAGSVLGKKAFFMTFLGDTMKGALVVSLGRLWHLEEWVIVSGAACVIAGHLYPFWLKCKGGKGVATFIGVGLALSTSLFLWMIAGTAAVLICTRSLTLGMVGGFIFYVGAIIQSGQLEAYALLIIAIVCMIIRHMSNIKESWKRGK
>NZ_CP014643.1|WP_012293599.1|3847720_3849262_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MYWCKIAQTNEEYEAIARLNYETFVEEIPQHEPNKQRLKIDRFHQENTYIVVYKKTELIGMVAFRDQRPFSMDEKIGKVEQFLPEEICGKICEIRLLAVKKNYRTGRVLWRLTQALNTFAYEKGYTAAVISGTTREEKLYKQMGFQQFAPAVGAKDAQFLPMVLTRDVFEHDLQRRLAKDDYTFYPGPVKQLETIGYTNLSHRSLNFKAIYERVQQQLLHLANTKHVGIIVGTGTLANEVMLAQLHAQQLGKGLILTNGEFGERLRKQAVRWSLDFDAAEQQWGTIFDYEKIASLLENGAYQWMLVVHGETSTGTCNDLESLGHLAKCYNVKLCVDSISTFGAMPFSLQDCYLATAVSGKAIGAMSGLAFVFSQYLAQSTTTLPAYLDLANYHQGAIPFTLPAVLLGNLDESLQAYPVRYAQLQQRFEALLQLPYMHFQLPTTQYPMLITIQLPETLSNLHIDLALNGLLAHGDSPYLRQRGFLQFAVIQPDFEDALVRLHEVLHYYEQITEA
>NZ_CP014643.1|WP_012293600.1|3846723_3847692_+|asparaginase
MKKTILLIHTGGTISMAMSAEGAVMPNKENPLMKESNKLNSLATIIEIEAFNLPSPHITPTEMLLLRNLIIEQTTAQQIDGVVITHGTDTLEETAYFLELTTNLAIPIVLTGAMRSSNELGADGIYNLMEAIRVAVDDEARDKGVLVVMNDEVHLAVNTTKTSTSSVNTFQSPQYGPIGLITKSRILFHHAPIRRQYVDVNSLSKRVAMLKVYAGMEEDLLDVVLACKYEGVVLEGLGQGNVPPSVVKGIESLIQRNIPVILVSRCFNGIAEGVYGYVGGGKMLEDLGAIFATGINGQKARLKLLIGLNTTGSPLNLKDFFL
>NZ_CP014643.1|WP_012293601.1|3845964_3846639_-|intramembrane-metalloprotease-PrsW
MIILLSAAIAPGLALFSYFYLRNQMATEPRRTLLQTFLYGAFLTFPILFLQYVLTEEGVFRYFYLQDVLFSSVIEEFFKWFVLLIAIYNHVEFDDPYDGILYGASISLGFATIENVLYLLSFGLDTAFMRALLPVSSHALFGVVMGYYYGRAKFSKLAKTKEMIAMALCAPIVLHILYNTILSFKGHWIYLMIPFMLFLWWFGLRKVKLAHYHLVQHLHMHKKI
>NZ_CP014643.1|WP_012293602.1|3845034_3845868_-|spore-cortex-lytic-enzyme
MRLVSILFALILGISIIAIPQNEVIAFSNQQITRGAYGDDVIELQARLQYLGFYKSKIDGKFGYNTYWALRNFQEKYGLPVDGIAGAKTKKTIAGYSDYDEKWVKAQLNAGNQFTYYGGIPLDQQVNKGTSTGSGAGSGGGNSSGTTNNNGTQTQVPPKYTERDLQLMANAVYGEARGEPYEGQVAVAAVILNRLESPDFPNTISGIIFQPLAFTAVADGQIWLEPNDRAKEAVIDAMNGWDPSENALYYFNPKTATSKWIWSRPQIKQIGEHIFCS
>NZ_CP014643.1|WP_031417965.1|3843735_3845019_-|sporulation-protein
MKTWLVVLTIAVIGLGAYSIDLHGDKEDLQRTVLAQYTDKLTDASEKLSHLQRSVSQSLLFQDEQAIHSELDSVWRLSSEVRSSIANIPIGQELSNEWMNYLGRLGDEAKRTAKTGDYVAWREKMPQVSSNLQALSDDWTAATVDFYKHNGKMDVWLQQVDNKNPNTNFDKVKDTLKGYGEKDFPLTLSESDWQKKIELKALQDAEITEKEALEKVKYLFPVIKDATFTVTKSSDTAPYPFYHIQFHQGIRLGYVDLTVKGGHLLSYLVERPVDEAKQSQEEILKKAEEYVKKLGMKDVAYVESRENHQAWHVTFARVHPGDNALIYADGVQLKLAKDTGELLGANAMEYIQEENIKKQTAKPIDWKTFFQDDIQVQEVKNIYTDNGEFEQRLCYEVIALRDGKTQETFRIVIDAENHNVLKVEYLT
>NZ_CP014643.1|WP_012293604.1|3842989_3843649_-|glycosyl-transferase
MEIKIGTQLQLEPTYTERVEKFRCKVVEQQDHILYIDYPINMATKKTAFLIDGSEFRATFRTEDKQSFAFNTEVIGRKAGHIPMIMLHCPKPEEFIKIQRREYVRVETPVDVAVQFKDHKYQLVAADISAGGLALILKGEVAFDDGDEVKLTVALPFVNGDVKYVITEATVVRIFEKDSKRIATIQLTDSDDVDQQHIVRFCFERQLGNRRKELNPFNA
>NZ_CP014643.1|WP_012293605.1|3842218_3842893_-|(d)CMP-kinase
MKKNIQIAIDGPAGAGKSTIAKIVAEALDFTYIDTGAMYRAVTYKAMQQNIHLDDEAKLAEMLAASTIDLKPSPQGQLVFLDGHNVSADIRSNEVTSSVSQVAAHAKVRELLVAQQQKLAANGGVVMDGRDIATHVLKNAELKIFMSATVEERARRRFIDNQKRGIDSSLEKLQEEIALRDKKDSEREASPLIQAEDAIFLDTTALSIDDAAQAILKLAEEKML
>NZ_CP014643.1|WP_012293594.1|3852679_3854122_-|ATP-dependent-DNA-helicase-RecQ
MELEELLHKHFGYSSFRPGQREVIEAILQEKDVMALLPTGMGKSLCYQLPAYILEKPVLIVSPLLSLMQDQVEELKRFGEKRVVALNSFLSITEKRYVLHYLEQYRFIFTSPEMLLQQQVQEKLAQVKLGLIVVDEAHCISQWGYDFRPDYLRIGEWLSRHNRPPLLALSATATRKVMQDIRETLSLKDPFEFMYNVDRPNIQLGRIVLEDKADKASWLMRHVKATAGPGILYVSSRKRAQQYSEAFLQVGIRTAAYHAGYGAEDRQFIQQQFIDGELDWIVATNAFGMGINKQDIRQVIHESMPANIANYMQEIGRAGRDGEPAHAILLYCDGDEELAKFVVTGDLPSSQHVDRYEELLSQQVLPAQMLKNGELGETAFRVLDYWMQQETKEQVKARLNQLALEKYRAVDEMLKIIQTKDCIREHLVGYFGQKLQKKPEKCCENCGIHYDEIKKVRLTTEKKIEMISWERRLQLLLLGN
>NZ_CP014643.1|WP_036161145.1|3854122_3855151_-|ATP-dependent-DNA-helicase-RecQ
MFHQILLQIFQKLNKERTISAAYHVLKGKRSGQTIQDIGLFQLHQYFGLLPKLPRTTFDEAVTLFMQYSWLKVQESGHFYMEKLGLQRAQQTPPFFFDGWHYRGNEHVFFARLSLIVQSLSYQTAAVRSFSPISRDPDIQNWVRSFLQNHHYLQGHLQQQLLDECTSVLKNIPVSDGSKQLVLYRLSGYRLPGWTWQQLADKRKESVLDSQLAFIETLHKLLNEVQQNNDYPLLKEVAQGVRVKILLTDSAQQTAQLYEQGYSVEQIVQIRKLKQSTIEDHFVELAMYEPNFSIGPFVSYEEAEKVWQASKHYQTKKLKILHEALKELSYFQLRLVLAKGEV
>NZ_CP014643.1|WP_004232564.1|3855257_3855506_+|ferredoxin
MAKYTIVDKDTCIACGACGAAAPDIYDYDDEGIAFVILDDNMGTAEVPEDLLEDMQDAFEGCPTDSIKVADETFDGDSLKFE
>NZ_CP014643.1|WP_036161142.1|3855640_3856234_+|hypothetical-protein
MFEQLQVEHSLFHIDKEHINQFKKLAAKWQIIFPQVYAKCLNTLDSWAIVLNNWFFFKSQHTDELILNPSKAIYYSINTFLLEELKKIQIIQKINQCNNDDLQYFAAFQLGNAIDLWVYKTVGKSTAADLLNSQEDKPYFLAYLDDGFQTDNTPFHRDQTRAIKILAQTIRNHNCFRITINSAVYQAVDMYEDYVAN
>NZ_CP014643.1|WP_012293591.1|3856383_3857166_+|SDR-family-oxidoreductase
MMDNLLQLKDKNIVVMGVANDRSIAWGIAKRLFDVGANVIFTYRQERSLKKLQKQLDNMGQADSLVVQCDVNSDESTKAAFDEIGSKVGIIHGIVHSVAFAHAEDLHNRFLETTREGYAFAQDTSAYSLISTAKAAHPYMTEGGSIVTMSYLGAERVLDGYNVMGVAKAALEASMRYLAADIGQDNIRVNAISAGAIRTLAAKGVPSFNTILHKIEETAPLKRNVQQDEVADMTIVMLSHLSRGVTGETIYIDAGYNIMG
>NZ_CP014643.1|WP_012293590.1|3857219_3857945_-|sulfite-exporter-TauE/SafE-family-protein
MQELLLYFFIILTASILQTSTGFGFSIMATPFLLLLFSPQEAMQINIVLSLVISCSLIWRVRHDIDTVLLKRIIIGSVVGAPFGSVVFALVDATTFKLIIAILLIGLTFLLMKNFSIQQTSGRDYGVGLISGMFTTSIGMAGPPLLMYFASTHQNKETIRAISLAYYIFIYLISLLSQVTVEGTSTLVWIYSLYALPIVFIGLILGQMLYTRLNQKLFRSLIYLLLVAAGLILFIQSIGTI
>NZ_CP014643.1|WP_012293589.1|3857969_3859175_-|MFS-transporter
MEYIQKGTKAFRKANWVLFLAGFITFANLYITQPLLPTFADLFHVSPAVASLSLSVTTFALAVSLIIISSLSEAWGRKSLMTISIFAASVLTVALAFSPNFEIILVLRVLQGIVFAGLPAIAMAYLGEEMEPASLGVAMGLYISGNSVGGLSGRVIIGTLTDHYNWHVGMMVLGGISLIVSVLFVWMLPSSKHFSPRPLQLKALTKTLWQHLKDPSMLCLYGIGFVLMGSFITLYNYIGFKLMAPPYNLSATIVGWIFVIYLVGTVSSAWFGSLADRYGRQQMLLLAIAIMLAGAVVTLNGLLTLKIIGITVFTFGFFAAHSIASGWVSKRATHDKAQASSLYLFFYYVGSSVGGTVGGVFWVKYGWIGVVAMIALFLLIACVLSFLLKELIAKQHVTTTL
>NZ_CP014643.1|WP_012293588.1|3859475_3860300_+|methyl-accepting-chemotaxis-protein
MKIIEALALAAPYIHLALKQEAIVAVIEKDSETVIKYLAGKRVDSGYHDGQKVNANDQNVYIAFNGQNADVVIPKDVYGVAINAFSFPIRENGLVVGALAFGLPIDNELKLEDYMSTMDNIVNSLQDKVHTIASHSEELAATSEEINKQAQHALEDSEKTNAVTDLIKSISRQTNLLGLNASIEAARAGQHGAGFNIVAQEVRKLSFETSSATENIESSLRNINRNLENLKQNMGQINDATNEQAQLVQDFSEIIEELTVLSREMKGFMHDALK
>NZ_CP014643.1|WP_012293587.1|3860315_3860861_+|GNAT-family-N-acetyltransferase
MDIYINDDLSLRTITLEDAEAVFACTDASRKYLKEWLPWLDYTKEVADTKAYIEGCIKGYEANNSLSLVILFKNEIVGIAGFNTINPTNKIGTIGYWLSEGAQGHGIMTKAVKALLQYAFETLQLHKVEIRAAVGNEKSRAIPERLGLMKEGTLRAAEWLYDHYVDHVVYGMLRSEWQQQK
>NZ_CP014643.1|WP_051563204.1|3861241_3864043_-|hypothetical-protein
MNYFERITGTVKGICNKWTVSLLLFLIMFLSLMPQFLLSVNADSAATLFVSPSIVSNDTAPRVDGATYATLQGAINAAQDNDTIAVTEDINLSSAISIMKDITLLASGGNYKVTLGINANFRVQDGFDLTLGGGSDTEVLTLSGPQRTIITVANGNIEINNGAKLLATGPRNMVLDLYDPKASGKITGRHLESSGSIAISMTNGARLEEISGGTIIGKTHSLYMYDEDTKINLISGGTFRNLAASPERWANVQVDGKAQIGEISNGDFFAEQEIAALRLLRGGTIGKISGGRFICAYTKLTANYYGRGIDIVALGDPSGIGEISGGTFDGEIGVLLLEDGAFINKISGGTFLGGEAGLQNDIGGTIDIISNAIITSTNVGLLNVGTINEIGSNTEITGDSIALWNYASNHPNAIIKLISGGKFTSVSASGEAFLNETTVNMISGGIFIGGFHAINSTTLSSTSPAKIDTISGGVFYAQTTGDPSFVTINLANPLILEPFLLTNKGKARFWGNEGSIFNDEALVIYPADYRMSTATETISDIVGVGFKYLTKSLYTVNFNSNGGSAVAEQTDIPRSSLITEPTPPIKSEYTFSGWYKEDTLTNAWKFDTDTVTDNITLYAKWTSKGGSGNNNSNNNSNNNNSSNNNNSSSGAPSATLLVQGIDKQSGEIIYSKSSSVIVGTTETINALAIEGYHLDTGSKKTETITFKAGENKVVFFYSKNIEAIPELETGEHIKYINGYPDGSVKPGSSITRAEAAAIYFRLIKDENKNIAVNGTFSDVGGDTWYAQSVNYLASQGILVGYRDGTFKPRQTITRAEFAAIASRFDNLLTNENTSFKDVSIDHWAAAYIDSAYTKGWINGYPDGSFRPASSITRAEVVKIINNMLNRKIELSDIPSDAVQYKDLTKKHWAYCYIIEASTEHSYTRKDNGFELWK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1057 : 82783

Bacillus_phage(50.0%)

protease,transposase,integrase

attL 11492:11550|attR 78767:78825

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061504535.1\|1057_1276_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_036160806.1\|3165_5130_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.9e-17	44.1
WP_155726281.1\|10452_10602_+	hypothetical protein	NA	NA	NA	NA
11492:11550	attL	NA	NA	NA	NA
WP_036160800.1\|11556_12507_-\|protease	Zn-dependent protease	NA	NA	NA	NA
WP_158511882.1\|13784_13994_-	hypothetical protein	NA	NA	NA	NA
WP_036160796.1\|14224_14815_-	hypothetical protein	NA	NA	NA	NA
WP_012292847.1\|15032_15536_+	hypothetical protein	NA	NA	NA	NA
WP_012292846.1\|15965_16973_-	DUF4179 domain-containing protein	NA	NA	NA	NA
WP_012292845.1\|16950_17493_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_012292844.1\|17803_20344_-	hypothetical protein	NA	NA	NA	NA
WP_036160793.1\|20695_21031_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_036160791.1\|21465_22302_-\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	2.3e-24	30.3
WP_080695238.1\|22307_23282_-\|integrase	tyrosine-type recombinase/integrase	W5RV39	Staphylococcus_phage	1.0e-07	25.5
WP_012292840.1\|24223_25057_-\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	3.0e-16	26.5
WP_036160788.1\|25062_25956_-\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	1.4e-19	25.7
WP_012292837.1\|28398_29799_+	spore germination protein	NA	NA	NA	NA
WP_036160781.1\|29828_30956_+	Ger(x)C family spore germination protein	NA	NA	NA	NA
WP_139015314.1\|31377_31788_+	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA
WP_012292834.1\|32594_33005_+	DUF4183 domain-containing protein	NA	NA	NA	NA
WP_036160776.1\|33052_33373_+	DUF4183 domain-containing protein	NA	NA	NA	NA
WP_012292832.1\|34001_34745_-	hypothetical protein	NA	NA	NA	NA
WP_012292831.1\|35438_37172_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_080695167.1\|38039_38138_+	hypothetical protein	NA	NA	NA	NA
WP_012292829.1\|38277_38715_-	hypothetical protein	NA	NA	NA	NA
WP_012292828.1\|39039_39912_+	hypothetical protein	NA	NA	NA	NA
WP_012292827.1\|41153_42587_+	HTH domain-containing protein	NA	NA	NA	NA
WP_051563177.1\|43269_45609_+	EAL domain-containing protein	G3MA91	Bacillus_virus	4.3e-20	34.3
WP_036160771.1\|45793_48406_+	hypothetical protein	A0A0K2CYN4	Paenibacillus_phage	2.5e-133	35.9
WP_036160769.1\|48992_49568_-	hypothetical protein	NA	NA	NA	NA
WP_012292822.1\|51472_51934_-	hypothetical protein	NA	NA	NA	NA
WP_139015313.1\|52472_53351_+	ETX/MTX2 family pore-forming toxin	NA	NA	NA	NA
WP_012292817.1\|55629_56037_-	hypothetical protein	NA	NA	NA	NA
WP_080695166.1\|56078_56339_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A1P8CWQ3	Bacillus_phage	2.0e-11	65.4
WP_139015312.1\|56290_56485_-	hypothetical protein	A0A1P8CWQ3	Bacillus_phage	2.3e-12	67.3
WP_139015311.1\|56833_57151_-	hypothetical protein	NA	NA	NA	NA
WP_036160766.1\|58644_58938_-	hypothetical protein	NA	NA	NA	NA
WP_012292811.1\|59609_60086_-	hypothetical protein	NA	NA	NA	NA
WP_139015351.1\|60213_60639_-	hypothetical protein	NA	NA	NA	NA
WP_012292809.1\|61203_61818_-	hypothetical protein	NA	NA	NA	NA
WP_080695165.1\|61995_62499_-	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA
WP_012292806.1\|62583_62838_-	hypothetical protein	NA	NA	NA	NA
WP_012292805.1\|63526_63895_-	hypothetical protein	NA	NA	NA	NA
WP_012292804.1\|63907_66895_-	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA
WP_012292803.1\|66897_68373_-	DNRLRE domain-containing protein	NA	NA	NA	NA
WP_036160763.1\|68359_68725_-	hypothetical protein	I1TLF2	Bacillus_phage	2.3e-05	45.1
WP_012292800.1\|69487_69688_-	hypothetical protein	NA	NA	NA	NA
WP_036160758.1\|70694_72851_-	hypothetical protein	NA	NA	NA	NA
WP_036160752.1\|75032_79904_-	DNRLRE domain-containing protein	I1TLF2	Bacillus_phage	3.4e-11	26.6
78767:78825	attR	NA	NA	NA	NA
WP_139015310.1\|81432_82783_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.9e-124	81.8

DBSCAN-SWA_2

1215465 : 1222933

Bacillus_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012291984.1\|1215465_1216440_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	1.1e-86	51.1
WP_012291985.1\|1216513_1217266_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_012291986.1\|1217262_1217994_-	phosphate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.1e-17	34.6
WP_012291987.1\|1218093_1218594_+	methylated-DNA--[protein]-cysteine S-methyltransferase	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	3.2e-21	46.6
WP_012291988.1\|1218660_1219962_-	ammonium transporter	H8ZJB2	Ostreococcus_tauri_virus	1.8e-68	40.5
WP_012291989.1\|1219975_1220317_-	P-II family nitrogen regulator	NA	NA	NA	NA
WP_036160402.1\|1220629_1222090_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	5.0e-115	46.7
WP_012291991.1\|1222108_1222933_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	3.8e-72	54.2

DBSCAN-SWA_3

1244814 : 1253226

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012292010.1\|1244814_1246110_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	4.7e-16	31.5
WP_012292011.1\|1246239_1246950_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D7SS43	Cyanophage	3.4e-45	41.0
WP_012292012.1\|1246952_1247201_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_012292013.1\|1247203_1247887_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_012292014.1\|1247873_1250108_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.4e-156	40.4
WP_012292015.1\|1250083_1251508_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.4e-52	34.0
WP_012292016.1\|1251601_1252657_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	8.6e-61	43.7
WP_012292017.1\|1252656_1253226_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.3e-23	37.3

DBSCAN-SWA_4

1712709 : 1722045

Staphylococcus_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012295735.1\|1712709_1713288_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	2.9e-42	49.5
WP_031416441.1\|1713284_1714241_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	5.1e-60	75.2
WP_036162335.1\|1714467_1715646_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	5.8e-106	49.2
WP_012295733.1\|1715792_1716140_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_031416439.1\|1716197_1717940_+	STAS domain-containing protein	A0A2H4J153	uncultured_Caudovirales_phage	5.8e-46	28.1
WP_012295731.1\|1718301_1720719_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	73.8
WP_036162332.1\|1720863_1722045_-	NupC/NupG family nucleoside CNT transporter	B2YG43	Musca_hytrovirus	2.5e-08	21.6

DBSCAN-SWA_5

2159814 : 2231462

Vibrio_phage(19.44%)

protease,integrase,plate,coat,tail,terminase,head,tRNA,holin,capsid,portal

attL 2169294:2169316|attR 2194316:2194338

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_036162193.1\|2159814_2161164_-\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
WP_139015344.1\|2161367_2163281_-	recombinase family protein	A0A0A7RUB1	Clostridium_phage	1.0e-144	49.7
WP_036162191.1\|2163770_2163950_+	hypothetical protein	NA	NA	NA	NA
WP_036162189.1\|2163957_2164320_-	helix-turn-helix transcriptional regulator	A0A0A8WJK5	Clostridium_phage	8.2e-11	33.0
WP_051563287.1\|2164365_2164731_-	helix-turn-helix transcriptional regulator	A0A0A8WJK5	Clostridium_phage	1.2e-17	43.4
WP_155726286.1\|2164917_2165073_+	hypothetical protein	NA	NA	NA	NA
WP_012295315.1\|2165327_2165501_+	hypothetical protein	NA	NA	NA	NA
WP_012295314.1\|2165494_2165845_+	hypothetical protein	NA	NA	NA	NA
WP_012295313.1\|2166132_2167065_+	hypothetical protein	Q0SPI6	Clostridium_phage	1.0e-33	37.9
WP_051563285.1\|2167039_2167513_+	hypothetical protein	NA	NA	NA	NA
WP_012295310.1\|2167525_2169067_+	hypothetical protein	A0A0E3XCJ0	Enterococcus_phage	6.4e-12	32.8
WP_012295309.1\|2169063_2169921_+	DUF3102 domain-containing protein	A0A2H4J025	uncultured_Caudovirales_phage	3.3e-18	45.6
2169294:2169316	attL	NA	NA	NA	NA
WP_012295308.1\|2169920_2170127_+	hypothetical protein	NA	NA	NA	NA
WP_158511878.1\|2170113_2170485_+	hypothetical protein	NA	NA	NA	NA
WP_012295306.1\|2170559_2171279_+	hypothetical protein	A0A068EMK6	Bacillus_phage	3.9e-20	30.7
WP_012295304.1\|2171661_2171820_+	hypothetical protein	NA	NA	NA	NA
WP_012295303.1\|2171914_2172250_+	hypothetical protein	NA	NA	NA	NA
WP_051563284.1\|2172276_2172723_+	hypothetical protein	A0A1B1P7B2	Bacillus_phage	6.7e-15	36.2
WP_012295301.1\|2172719_2173301_+\|integrase	tyrosine-type recombinase/integrase	A0A0S2GLG4	Bacillus_phage	5.6e-46	52.1
WP_012295299.1\|2173695_2173890_+	hypothetical protein	NA	NA	NA	NA
WP_012295298.1\|2174039_2174618_+	hypothetical protein	A0A0E3Y4U4	Fusobacterium_phage	4.2e-09	28.0
WP_036162186.1\|2174577_2176413_+\|terminase	phage terminase large subunit family protein	A0A2K9V3X4	Faecalibacterium_phage	3.5e-174	52.6
WP_036162184.1\|2176388_2176622_+	hypothetical protein	A0A067ZJ01	Vibrio_phage	1.1e-13	49.4
WP_012295296.1\|2176637_2178215_+\|portal	phage portal protein	A0A0C5AJ48	Bacteriophage	2.4e-155	58.3
WP_012295295.1\|2178201_2179269_+\|protease	Clp protease ClpP	A0A0A7RWX3	Clostridium_phage	1.8e-45	49.0
WP_012295294.1\|2179269_2179635_+\|head	head decoration protein	NA	NA	NA	NA
WP_012295293.1\|2179638_2180664_+\|capsid	major capsid protein	A0A059WRQ2	Vibrio_phage	1.1e-57	38.1
WP_012295292.1\|2180675_2181041_+	hypothetical protein	NA	NA	NA	NA
WP_012295291.1\|2181033_2181366_+	hypothetical protein	NA	NA	NA	NA
WP_012295290.1\|2181378_2181930_+	hypothetical protein	NA	NA	NA	NA
WP_012295289.1\|2181929_2182421_+	hypothetical protein	NA	NA	NA	NA
WP_012295288.1\|2182410_2182716_+	hypothetical protein	NA	NA	NA	NA
WP_036162181.1\|2182717_2184148_+	hypothetical protein	A0A0C5AEE8	Bacteriophage	2.0e-100	41.5
WP_012295287.1\|2184165_2184687_+\|tail	phage major tail tube protein	A0A0E3Y6F4	Fusobacterium_phage	3.8e-25	33.5
WP_012295286.1\|2184714_2185113_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_051563282.1\|2185261_2188213_+\|tail	phage tail tape measure protein	A0A0N9SJR9	Paenibacillus_phage	1.7e-98	62.4
WP_036162178.1\|2188205_2188421_+	hypothetical protein	A0A067ZJB1	Vibrio_phage	6.1e-06	37.5
WP_012295282.1\|2188417_2189434_+	bacteriophage regulatory protein	A0A0C5AJ59	Bacteriophage	4.2e-44	33.3
WP_012295281.1\|2189433_2189625_+	hypothetical protein	NA	NA	NA	NA
WP_051563280.1\|2189635_2190310_+	SH3 domain-containing protein	A0A067ZI88	Vibrio_phage	3.6e-20	40.9
WP_036162860.1\|2190328_2190613_+	hypothetical protein	NA	NA	NA	NA
WP_012295278.1\|2190602_2191733_+\|plate	baseplate J/gp47 family protein	A0A067ZJB4	Vibrio_phage	2.4e-69	38.8
WP_012295277.1\|2191725_2192373_+\|tail	phage tail protein I	A0A059WLJ8	Vibrio_phage	5.0e-19	31.1
WP_012295276.1\|2192374_2193709_+\|tail	phage tail protein	A0A2H4J194	uncultured_Caudovirales_phage	1.0e-42	53.4
WP_012295275.1\|2193727_2194168_+	hypothetical protein	S5MUI6	Brevibacillus_phage	3.0e-07	29.7
WP_012295274.1\|2194446_2195703_+	DNA (cytosine-5-)-methyltransferase	A0A141E1L1	Streptococcus_phage	2.4e-134	60.5
2194316:2194338	attR	NA	NA	NA	NA
WP_012295273.1\|2195755_2196145_+\|holin	holin	Q8SBN5	Clostridium_phage	2.9e-22	52.1
WP_080695220.1\|2196141_2196837_+	N-acetylmuramoyl-L-alanine amidase	A0A060AC40	Listeria_phage	1.1e-43	50.3
WP_036162852.1\|2196979_2197204_+	transcriptional regulator	NA	NA	NA	NA
WP_036162175.1\|2197197_2197536_+	hypothetical protein	NA	NA	NA	NA
WP_012295269.1\|2197641_2198112_+	hypothetical protein	NA	NA	NA	NA
WP_012295268.1\|2198220_2198424_-	helix-turn-helix transcriptional regulator	A0A0A0RVA6	Bacillus_phage	8.6e-10	45.5
WP_036162170.1\|2198597_2199491_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_036162167.1\|2199873_2201169_+	cell division protein FtsK	A0A2H4J9G1	uncultured_Caudovirales_phage	4.7e-133	57.5
WP_051563278.1\|2201110_2201710_+	hypothetical protein	A0A1S5QTS6	Bacillus_phage	2.0e-46	48.7
WP_012295264.1\|2201710_2202250_+	hypothetical protein	A0A2H4JA12	uncultured_Caudovirales_phage	2.0e-21	67.9
WP_012295263.1\|2202774_2203446_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_036162165.1\|2203572_2203797_+\|coat	spore coat associated protein CotJA	NA	NA	NA	NA
WP_012295262.1\|2203793_2204057_+\|coat	spore coat protein CotJB	NA	NA	NA	NA
WP_031417041.1\|2204081_2204651_+	hypothetical protein	NA	NA	NA	NA
WP_012295261.1\|2204698_2205355_-	TrkA family potassium uptake protein	NA	NA	NA	NA
WP_036162163.1\|2205381_2206719_-	ATP synthase subunit J	NA	NA	NA	NA
WP_004227078.1\|2207228_2207402_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_031417037.1\|2207703_2209032_+	membrane protein	NA	NA	NA	NA
WP_008179446.1\|2209035_2210040_+	flotillin-like protein FloA	NA	NA	NA	NA
WP_012295257.1\|2210065_2210545_+	hypothetical protein	NA	NA	NA	NA
WP_012295256.1\|2210600_2210849_+	hypothetical protein	NA	NA	NA	NA
WP_012295255.1\|2210850_2211963_+	stage IV sporulation protein	NA	NA	NA	NA
WP_031417032.1\|2211965_2212922_+	PhoH family protein	L7TP00	Rhizobium_phage	3.2e-46	46.9
WP_012295253.1\|2213145_2215266_+	HD family phosphohydrolase	NA	NA	NA	NA
WP_012295252.1\|2215274_2215748_+	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_012295251.1\|2215748_2216099_+	diacylglycerol kinase family protein	NA	NA	NA	NA
WP_008179431.1\|2216164_2216578_+	cytidine deaminase	NA	NA	NA	NA
WP_036162160.1\|2216564_2217482_+	GTPase Era	NA	NA	NA	NA
WP_036162158.1\|2217673_2218462_+	DNA repair protein RecO	NA	NA	NA	NA
WP_036162156.1\|2218486_2219890_-	S-layer homology domain-containing protein	NA	NA	NA	NA
WP_031417025.1\|2220639_2222358_+	HD domain-containing protein	NA	NA	NA	NA
WP_012295244.1\|2222408_2223794_-\|tRNA	glycine--tRNA ligase	A0A2I2L3K8	Orpheovirus	2.2e-48	31.1
WP_008178461.1\|2224473_2225106_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_008178459.1\|2225123_2225936_+	kinase/pyrophosphorylase	NA	NA	NA	NA
WP_012295243.1\|2226143_2227976_+	DNA primase	A0A1S5RH72	Helicobacter_phage	6.6e-48	34.8
WP_012295242.1\|2228008_2229136_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	2.4e-37	38.1
WP_036162150.1\|2229368_2229932_+	hypothetical protein	NA	NA	NA	NA
WP_012295240.1\|2230245_2230605_+	cytochrome c	NA	NA	NA	NA
WP_031417022.1\|2230769_2231462_+\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_6

2799503 : 2805515

Pneumococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012294688.1\|2799503_2801858_-	peptidase	E3T4I7	Cafeteria_roenbergensis_virus	6.4e-72	30.0
WP_031418567.1\|2802453_2802954_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	4.4e-47	61.1
WP_012294686.1\|2803073_2803733_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	6.6e-67	56.3
WP_012294685.1\|2803735_2804209_+	6-carboxytetrahydropterin synthase QueD	J9PV91	Bacillus_phage	3.3e-60	72.2
WP_036161829.1\|2804201_2804930_+	7-carboxy-7-deazaguanine synthase QueE	E7DN68	Pneumococcus_phage	4.7e-50	43.4
WP_012294683.1\|2804975_2805515_+	hypothetical protein	E7DND6	Pneumococcus_phage	1.0e-04	27.0

DBSCAN-SWA_7

3015172 : 3062237

Bacillus_virus(16.67%)

tRNA,transposase,integrase

attL 3014996:3015012|attR 3073054:3073070

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3014996:3015012	attL	NA	NA	NA	NA
WP_036161677.1\|3015172_3015778_+\|transposase	IS607 family transposase	Q331Z3	Clostridium_botulinum_C_phage	4.2e-52	53.3
WP_012294477.1\|3015770_3016940_+\|transposase	transposase	D2XQ03	Bacillus_virus	1.8e-96	49.7
WP_036161675.1\|3017471_3018908_-\|tRNA	proline--tRNA ligase	A0A2K9L3R9	Tupanvirus	4.9e-99	38.8
WP_012294475.1\|3019240_3020962_-	phosphodiesterase	G3MA91	Bacillus_virus	2.6e-14	33.9
WP_012294474.1\|3021339_3021510_-	hypothetical protein	NA	NA	NA	NA
WP_004230023.1\|3021713_3021863_-	hypothetical protein	NA	NA	NA	NA
WP_012294472.1\|3022457_3022955_-	DinB family protein	NA	NA	NA	NA
WP_012294471.1\|3023008_3023971_-	tyrosine recombinase XerC	A0A160DCT0	Gordonia_phage	8.5e-15	29.6
WP_036161672.1\|3024310_3024724_-	hypothetical protein	NA	NA	NA	NA
WP_012294469.1\|3024802_3026290_+	circularly permuted type 2 ATP-grasp protein	NA	NA	NA	NA
WP_080695199.1\|3026243_3027209_+	alpha-E domain-containing protein	NA	NA	NA	NA
WP_012294467.1\|3027270_3028125_+	transglutaminase family protein	NA	NA	NA	NA
WP_012294466.1\|3028177_3029053_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012294465.1\|3029414_3030209_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_031415877.1\|3030467_3030788_+	hypothetical protein	NA	NA	NA	NA
WP_012294463.1\|3031038_3031854_-	ATP-binding protein	NA	NA	NA	NA
WP_012294462.1\|3032165_3033341_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_012294461.1\|3033819_3035019_-	AI-2E family transporter	NA	NA	NA	NA
WP_012294460.1\|3035083_3036034_-	LCP family protein	NA	NA	NA	NA
WP_012294459.1\|3036210_3036732_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_036161669.1\|3036809_3038582_-	DNA helicase RecQ	A0A0G2Y8K9	Acanthamoeba_polyphaga_mimivirus	3.5e-70	35.4
WP_012294457.1\|3038589_3039690_-	hypothetical protein	NA	NA	NA	NA
WP_036161666.1\|3039946_3041122_-	MFS transporter	NA	NA	NA	NA
WP_012294454.1\|3041222_3042896_-\|tRNA	arginine--tRNA ligase	A0A2I2L3K1	Orpheovirus	1.4e-73	32.5
WP_012294452.1\|3043337_3045224_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_012294451.1\|3045814_3045955_+	hypothetical protein	NA	NA	NA	NA
WP_139015334.1\|3046153_3047302_-	copper amine oxidase N-terminal domain-containing protein	NA	NA	NA	NA
WP_012294449.1\|3048345_3049845_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	9.9e-10	37.2
WP_036161662.1\|3050459_3051386_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_031415857.1\|3051675_3052698_-	alpha/beta hydrolase	M1PGN2	Moumouvirus	1.3e-16	26.3
WP_012294444.1\|3053604_3054786_-	glucosyltransferase	Q6QXI9	Agrotis_segetum_granulosis_virus	9.5e-08	27.0
WP_036161659.1\|3054782_3055220_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_051563241.1\|3056250_3056583_-	DUF4288 domain-containing protein	NA	NA	NA	NA
WP_012294441.1\|3056607_3056937_-	hypothetical protein	NA	NA	NA	NA
WP_012294440.1\|3057097_3058078_-	ETX/MTX2 family pore-forming toxin	A0A2I7SC07	Paenibacillus_phage	7.6e-19	28.0
WP_080695198.1\|3058576_3059017_-	ETX/MTX2 family pore-forming toxin	NA	NA	NA	NA
WP_012294438.1\|3060666_3061323_+	response regulator transcription factor	NA	NA	NA	NA
WP_012294437.1\|3061426_3061570_-\|transposase	transposase	NA	NA	NA	NA
WP_012294436.1\|3061535_3061862_-\|transposase	IS3 family transposase	A0A0C5AEA5	Paenibacillus_phage	3.0e-28	62.3
WP_081112813.1\|3061865_3062237_-\|transposase	IS3 family transposase	NA	NA	NA	NA
3073054:3073070	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3966382 : 3986293

Clostridium_phage(47.37%)

holin,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012293487.1\|3966382_3967210_-	M23 family metallopeptidase	D6QWN5	uncultured_phage	4.3e-15	38.4
WP_012293486.1\|3967424_3968837_-	hypothetical protein	NA	NA	NA	NA
WP_012293485.1\|3969266_3969989_-	N-acetylmuramoyl-L-alanine amidase	A0A060AC40	Listeria_phage	2.9e-44	49.1
WP_012293484.1\|3969985_3970252_-\|holin	holin	A0A2H4JAH4	uncultured_Caudovirales_phage	4.0e-15	53.6
WP_051563194.1\|3970264_3970570_-	hypothetical protein	A0A0H3UZE6	Geobacillus_virus	1.3e-09	38.6
WP_012293482.1\|3970744_3971164_-	hypothetical protein	NA	NA	NA	NA
WP_012293481.1\|3971177_3972803_-	hypothetical protein	S6B1J7	Thermus_phage	1.2e-24	50.7
WP_012293480.1\|3972802_3973351_-	DUF2313 domain-containing protein	A0A0A8WII4	Clostridium_phage	2.6e-16	32.9
WP_012293479.1\|3973343_3974429_-\|plate	baseplate J/gp47 family protein	A0A0A8WJT7	Clostridium_phage	1.4e-85	48.4
WP_012293478.1\|3974428_3974833_-	DUF2634 domain-containing protein	A0A0A8WFW6	Clostridium_phage	4.7e-31	52.8
WP_012293477.1\|3974832_3975147_-	DUF2577 domain-containing protein	A0A0A7RTJ2	Clostridium_phage	3.9e-09	30.8
WP_139015321.1\|3975148_3976111_-	hydrolase	H7BVH4	unidentified_phage	3.8e-87	50.6
WP_036161043.1\|3976103_3976787_-	LysM peptidoglycan-binding domain-containing protein	A0A0A8WFE5	Clostridium_phage	4.9e-41	47.9
WP_012293474.1\|3976779_3978702_-	hypothetical protein	A0A0A8WJT6	Clostridium_phage	3.7e-17	23.8
WP_008174525.1\|3978916_3979081_-	hypothetical protein	NA	NA	NA	NA
WP_012293473.1\|3979110_3979545_-	hypothetical protein	X5JAB6	Clostridium_phage	5.7e-27	45.9
WP_031419168.1\|3979605_3980094_-\|tail	phage tail tube protein	A0A0A8WJ62	Clostridium_phage	4.3e-47	58.4
WP_012293471.1\|3980136_3981459_-	hypothetical protein	X5JAJ1	Clostridium_phage	2.5e-126	51.6
WP_139015320.1\|3981460_3981673_-	hypothetical protein	NA	NA	NA	NA
WP_012293469.1\|3981644_3982103_-	hypothetical protein	NA	NA	NA	NA
WP_012293468.1\|3982899_3983232_-	hypothetical protein	A0A290FZR5	Caldibacillus_phage	5.2e-12	33.9
WP_012293467.1\|3983510_3984539_-	DnaD domain protein	A6M985	Geobacillus_virus	1.8e-50	46.8
WP_099805129.1\|3984865_3985135_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012293465.1\|3985319_3985676_+	helix-turn-helix domain-containing protein	S5MUA5	Brevibacillus_phage	2.0e-06	36.6
WP_139015319.1\|3985750_3986293_+	ImmA/IrrE family metallo-endopeptidase	A0A2H4JA43	uncultured_Caudovirales_phage	1.0e-28	39.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP014644

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014644_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014644_1

40165-40460

TypeI

I-C

Consensus_repeat	Method
ATTTCAATCCACGCTCCCCNTAAGGAGAGCGAC	CRT
ATTTCAATCCACGCTCCCCTAAGGAGAGCGAC	PILER-CR
ATTTCAATCCACGCTCCCCTAAGGAGAGCGAC	CRISPRCasFinder

4 spacers

RT,cas7,cas8c,cas5

The CRISPR arrays of NZ_CP014644_1

>merge|NZ_CP014644|1|40165-40460|CRT,PILER-CR,CRISPRCasFinder
TTTCAACCCACGCCCTCCACCTGGAGAGCGACGAAAGCTAACTAGACACCCTATAAGCATGTACCAATTTCAATCCACGCTCCCCTAAGGAGAGCGACGCAAGATTTATAATAAGAGATATAAATGGTAATATTTCAATCCACGCTCCCCTAAGGAGAGCGACTGCAGCAAATTAATGAAATGTTATCAGCCCATATAATTTCAATCCACGCTCCCCTAAGGAGAGCGACCGTTAGCTTATCCTCTGCTTTGATTTTTTTTAATATTTCAATCCACGCTCCCCTAAGGAGAGCGAC

>NZ_CP014644|1|1|40165-40460|CRT
TTTCAACCCACGCCCTCCACCTGGAGAGCGAC	GAAAGCTAACTAGACACCCTATAAGCATGTACCA
ATTTCAATCCACGCTCCCCTAAGGAGAGCGAC	GCAAGATTTATAATAAGAGATATAAATGGTAAT
ATTTCAATCCACGCTCCCCTAAGGAGAGCGAC	TGCAGCAAATTAATGAAATGTTATCAGCCCATATA
ATTTCAATCCACGCTCCCCTAAGGAGAGCGAC	CGTTAGCTTATCCTCTGCTTTGATTTTTTTTAAT
ATTTCAATCCACGCTCCCCTAAGGAGAGCGAC

>NZ_CP014644|1|1|40231-40460|PILER-CR
ATTTCAATCCACGCTCCCCTAAGGAGAGCGAC	GCAAGATTTATAATAAGAGATATAAATGGTAAT
ATTTCAATCCACGCTCCCCTAAGGAGAGCGAC	TGCAGCAAATTAATGAAATGTTATCAGCCCATATA
ATTTCAATCCACGCTCCCCTAAGGAGAGCGAC	CGTTAGCTTATCCTCTGCTTTGATTTTTTTTAAT
ATTTCAATCCACGCTCCCCTAAGGAGAGCGAC

>NZ_CP014644|1|1|40231-40460|CRISPRCasFinder
ATTTCAATCCACGCTCCCCTAAGGAGAGCGAC	GCAAGATTTATAATAAGAGATATAAATGGTAAT
ATTTCAATCCACGCTCCCCTAAGGAGAGCGAC	TGCAGCAAATTAATGAAATGTTATCAGCCCATATA
ATTTCAATCCACGCTCCCCTAAGGAGAGCGAC	CGTTAGCTTATCCTCTGCTTTGATTTTTTTTAAT
ATTTCAATCCACGCTCCCCTAAGGAGAGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014644.1\|WP_155726289.1\|35839_35989_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014644.1\|WP_061504568.1\|33492_33705_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014644.1\|WP_061504570.1\|34532_34949_-\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|372305
NZ_CP014644.1\|WP_012291763.1\|47799_48732_-\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|235511
NZ_CP014644.1\|WP_012291755.1\|41477_43298_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
NZ_CP014644.1\|WP_012291758.1\|44837_45173_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014644.1\|WP_061504572.1\|35552_35732_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014644.1\|WP_012291759.1\|45213_45954_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014644.1\|WP_012291762.1\|47373_47631_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014644.1\|WP_012291752.1\|36674_38480_-\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP014644.1\|WP_041659307.1\|45989_46847_-\|DNA-(cytosine-5-)-methyltransferase	unknown	unknown	gnl\|CDD\|238192
NZ_CP014644.1\|WP_012291756.1\|43313_44042_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl\|CDD\|187782
NZ_CP014644.1\|WP_012291757.1\|44321_44822_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014644.1\|WP_041659309.1\|47062_47314_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014644.1\|WP_061504566.1\|32507_32873_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014644.1\|WP_061504569.1\|33934_34123_-\|DUF3797-domain-containing-protein	unknown	unknown	gnl\|CDD\|289447
NZ_CP014644.1\|WP_061504567.1\|32946_33342_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014644.1\|WP_012291753.1\|39238_39403_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014644.1\|WP_012291754.1\|40627_41485_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|187820
NZ_CP014644.1\|WP_061504573.1\|36062_36548_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP014644.1\|WP_012291752.1\|36674_38480_-\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	1.22524e-124
NZ_CP014644.1\|WP_041659307.1\|45989_46847_-\|DNA-(cytosine-5-)-methyltransferase	gnl\|CDD\|238192	cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.	8.41566e-54
NZ_CP014644.1\|WP_012291756.1\|43313_44042_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	2.64406e-72
NZ_CP014644.1\|WP_061504570.1\|34532_34949_-\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|372305	pfam12773, DZR, Double zinc ribbon. This family consists of a pair of zinc ribbon domains.	0.000189377
NZ_CP014644.1\|WP_012291763.1\|47799_48732_-\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|235511	PRK05574, holA, DNA polymerase III subunit delta; Reviewed.	3.17956e-50
NZ_CP014644.1\|WP_012291755.1\|41477_43298_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	1.58415e-125
NZ_CP014644.1\|WP_061504569.1\|33934_34123_-\|DUF3797-domain-containing-protein	gnl\|CDD\|289447	pfam12677, DUF3797, Domain of unknown function (DUF3797). This presumed domain is functionally uncharacterized. This domain family is found in bacteria and viruses, and is approximately 50 amino acids in length. There is a conserved CGN sequence motif.	1.29802e-05
NZ_CP014644.1\|WP_012291754.1\|40627_41485_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	1.64382e-110

>NZ_CP014644.1|WP_012291753.1|39238_39403_-|hypothetical-protein
MTLGKASEIKFALIASNGRQQLQEWLEENRDVEVLDIKFDFDNYPKFLVIYRDN
>NZ_CP014644.1|WP_012291752.1|36674_38480_-|group-II-intron-reverse-transcriptase/maturase
MSTTLRHAEYYDMQSIFDDLYERSKNNATKGLNLYEHIISKNNILLAYRNIKANTGSKTAGTDGITIEQYKIEDVETFVDEIRATLKNYKPQTVRRVEIPKPNGKTRPLGIPTMRDRLIQQMFKQILEPICEARFYNHSYGFRPNRSTHHAMGRCQFLANIALNQHVVDIDIQGFFDNVSHSKLLKQMYSIGICDKRVLSVVSKMLKAPIKGIGIPTKGTPQGGILSPLLSNIVLNDLDWWISNQWENMKTKFNYKERKNKVLMIKRTTTLKEMYIVRYADDFKIFTKSHKNAIKLYHAVKGYLKNHLNLDISNEKSKITNLRKRASEFLGFSLKVIKKGKRYVANTHVMDDKVKTILQKARKLIHEIKKNPTAKMAMNYNAYVLGIKNYYKIATHVNTDFSEIAYRLSRTLYNRLKSIGNYGIPIKPSETYKRFNKNNFKTFEIENIHLFPIADIKTVNSTNFSQDLCNYTKEGRLKLHKQLKNDVAIEINRLLKTISYNDNLEYADNRISRYSMQSGKCAITGDFLVAEEVHCHHRIPRYMGGSDEFKNLVIVHSNVHKLIHATETETIERYKSLLQLDGKQLEKLNQFRKKCNLVALV
>NZ_CP014644.1|WP_061504573.1|36062_36548_-|hypothetical-protein
MGMYTAFRGKVIIKEQYKELVELINSGEWGIAVNKYPFLKEFYEIQRSTIIPYDIERIRKQLDKDGEIYLEHDPSDWASDSTYFTGLNGLEWTFITSLKDYPDREHGNKSPIVTFIDVVLSEVTSKVITIQEAYEEWIYNDIPFVEYDFDKVVINKITIKI
>NZ_CP014644.1|WP_155726289.1|35839_35989_-|hypothetical-protein
MSIHEAEWIVSEYEKGEKRFSNETVHKAYNLLEASPYEKYECDFVILNG
>NZ_CP014644.1|WP_061504572.1|35552_35732_-|hypothetical-protein
MRAVTMVLSISALIFTLWIIFFVDINSFEEVKQLSYNWIAFVVLVLMFFGGIFYSLKRK
>NZ_CP014644.1|WP_061504570.1|34532_34949_-|zinc-ribbon-domain-containing-protein
MFKTQLSRYCPNCQRIKHEPQAAFCFLCGTALKNGSLLEFYQTLKIPFAKIQIEKRYSEKYTSSAFPFFLWKHDRINKTIEVVTFHEYPKGVRLYVKLPARSSQANSSEEILLKEGTLDKLLKEGFEWFHQTEKETLW
>NZ_CP014644.1|WP_061504569.1|33934_34123_-|DUF3797-domain-containing-protein
MPLLFSEISPIKIFFFILKHKKCHECGSTLVGNGEGHFELTEKGFKRECKCGASVQTGFCKS
>NZ_CP014644.1|WP_061504568.1|33492_33705_+|hypothetical-protein
MNKTWEPLLCGNERLVHDAMFSMKKRGGTITAITSFHRKFNKNSVIVAVQGLEAKGLVKYDNLSQEYTLV
>NZ_CP014644.1|WP_061504567.1|32946_33342_+|hypothetical-protein
MSVVYRGLISPLYEEPVYFSERGIPLLSQYFEDVNENELMKPLLTMENYEKWYSMYIIYPDGKVEKFSSSTKENCDTWYDHAVYPSYFHLIAKRLGCTYDNRTFALVCERFVEDVLDGDWTALHNYLPKER
>NZ_CP014644.1|WP_061504566.1|32507_32873_+|hypothetical-protein
MGYDISLYKIPTKLKEQHINEDELFEIVYGDVYGEDDEEYLLAYTNFSMGNPKSSDFAEVFNIFLTNNDYFKIYKMSDYYEAKRRLQSMELDDGLLERINKFLNVIEDELNKGEMIFFCCG
>NZ_CP014644.1|WP_012291754.1|40627_41485_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTKNEIKAINKKDFAIVFSVKNANPNGDPNNGNRPRQSPFDSIGEISDVAIKRKIRNRFMDYDQDIFVQSEDRTIDGFRSLKDRADSIEGLKGADSETYKKIACETWIDVRTFGQVFSFKGDKNDSVSVGVRGPVAIQSAFSVHPIEITSTKITKSVNLVTSNKKTSDTMGEKHRVNYGLYVCYGSINSQLAQDTKFSDKDAALLKEILSSIFENDLSAARPSGSMEVHNVYWWEHNSPLGQYSSAKVHRSLEIKQTVESPTSYDDFEIKVNELDGLSVEVLPGY
>NZ_CP014644.1|WP_012291755.1|41477_43298_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSLLNALVQTYDNNLEVVGKVNKKRNGTEYTLLPIAHSTQVTHVEVFVSNQGEFLSAAVIEGERNTVIPVTEASSGRTSGLAPHPIHDKLMYVAGDYSDYISGKSKAREAFKLYLEQLSKWCDSEYGHESLSNLYEYLKKGTLIEDLVKNKTLYLDDNGMLLLKWQKKNEKTPDIYKIVSNVADVAIRFTIEGLEPVMWENTDIRNLHIQKTISDITELDFCYVTGEYAPISVNQPKKIRNTMDQAKLISSSNANALTFKGRFAEARDSFNISYEASQKAHNALKWLINRQSINIDGRVFLVWSDGMEQPKNWDELLRAGEQEAKEFYLNLTGVKEGHIDSKNTYLTILDAATPGRLAVTSFEQLTTSSYYKRVYNFYNKYIWYFTHRKNDNGENQEGLAAPTLKEILNVIYPDTTRADILKNTYNTLLICVLYNRPIPREYINRAVARLKNGNEMGTWEWDKNLSITCALINYERGKGEFSVSLDTQNNNRSYLFGRLLAVAEVLERSALGSENRPTNAARYTASFVQAPARTWTILQQKIVPYQNKLNSKLAAYYQAIIDNIISLMNPNDFSNKTLEETYLLGFYSQRKDLYTKKEKKGDKSND
>NZ_CP014644.1|WP_012291756.1|43313_44042_-|type-I-C-CRISPR-associated-protein-Cas5
MAWTIEFLVYGRNALFTDPFSKTGGEKTTTLIPTYEAMKGVAESIYWKPSIKWHIDSIRVMKAIRTESKGVLPRVYSGGKMLSLYTYLHDVAYQVRATISPNESRPDLKNDYNMVKHHQMALRSLDKGGRRDIFLGVRECQAYVEPCKFGSEDGEYDSTGTIGFGLMVHGFNYPNNRSKLFEVRFWKPEMLNGIINFPKPSDCIYTRKIREMNVKQGARFQSVDDALDILIREDGLGFFNNI
>NZ_CP014644.1|WP_012291757.1|44321_44822_-|hypothetical-protein
MKNEYVGIKEIAEIGASIEFEKDGQILDLAVYEVFEDHVVVTGGINVQHKDYTITAYDLQERKMRELPRVNLLFTEQEVGKEMMEKFIITQKDNDFAEIGHCFRCKFDGEKVTIHNDMSWWSVTIPLEQFRNEFKEMSKEDYSTYINACNEGEDQVIESVIKKYLG
>NZ_CP014644.1|WP_012291758.1|44837_45173_-|hypothetical-protein
MNKWNNFETLEHHKGKIWVSKLFKLENRGNICYLQNGEFLMLAYVSPSMLENKLLDTVIKDIIIANGTPYMLSEDTITCSVCGNSYDEGDVNIVDYPDDVCVTCEKNYTGS
>NZ_CP014644.1|WP_012291759.1|45213_45954_-|hypothetical-protein
MKSTHEIIAEAAKQLKLGVFNRVAVREESWALDKEKYYNRHLDDNEYIEIITFYNNKRNKTGNFIESLHVYFRWSLDDINVCAYTTSENQSVYQGTKIRNLKNPTKIGEVTTTFKDIAAVLKQFVLDAQKVLNIYLNKKIDPQFEATVKLLVETYSDKSNNLECMTVHFAIHSPSVSINLETGWGGDDFFFTVSKDRKKASMKIKLDAFELAPGDRTTYIETVDINEGDFLTAYKKFFYDYHLITQ
>NZ_CP014644.1|WP_041659307.1|45989_46847_-|DNA-(cytosine-5-)-methyltransferase
MITAKSYFSGAGGLDLGIIEAGIDVIESFEIDKKACNTLRNNFKHIINETDITKITVLDQQDADVYIGTFPCTKYSNIADIHGTRTGDDLFLHFFRHVALAQPEAYVIENVPGMKKFQVVMECLTKLPNYYVRVECPVNANMWLPQERKRLIVIGTKRPFNNLDYPESTPIKMRDIIDVGTEVYTPKYVQKRLEGHYRDKPIITDLDGIAPTCVAHYSKDRSTRLINDGVKIRPYSVREWARLQGFPDWFKFDGTDNDAYKMIGNAVPVNMGLWVGKQLKKYFAG
>NZ_CP014644.1|WP_041659309.1|47062_47314_-|hypothetical-protein
MLILNDNKTIESIFEGYDEWLLIGNEPQRKDVDEYTERYDLAGNRTCLYCSSRLPEDHPLTVCDSCYPDEDQTIESDLEGYDE
>NZ_CP014644.1|WP_012291762.1|47373_47631_-|hypothetical-protein
MNLKTAANWKWSLHQYLQVGDIVDDEIYSHFVNVLPPATFKQSLVQMGEPYCHVEGQPTYPTLQKTEHGWKYMGNCFRGEVVNKD
>NZ_CP014644.1|WP_012291763.1|47799_48732_-|DNA-polymerase-III-subunit-delta
MIHLLFGTEDFLIAEKKKEICRVEGVSISSFDMRETSLTSALEDAQMSDLFGGKKIVFLNDSYFLTGDTSKKITHDTDALLDYLESPNPDSTVVLVVNNEKLDKRKKVVKELLQKATTTFEAKPLYNAEKWLVERCKVYGKTLTRQAAVIMQQQLGKDLFLLDTELTKLVLAVDNPTISEKDLEGVLSRTLEGDVFKIVDHVIYKRSEALEILDDLFRLGHDSIQILLILAGQFRLIHQVKAIHELGESPKNILKGIHPYRLSMAEEQCQLYSIEDLQQRLKDCAELDLQMKRGYCDKVIGLETLILKWL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014644_1	1.1\|40197\|34\|NZ_CP014644\|CRT	40197-40230	34	NZ_CP014857	Lysinibacillus sphaericus III(3)7 plasmid, complete sequence	59045-59078	0	1.0
NZ_CP014644_1	1.1\|40197\|34\|NZ_CP014644\|CRT	40197-40230	34	NC_010381	Lysinibacillus sphaericus C3-41 plasmid pBsph, complete sequence	104910-104943	0	1.0
NZ_CP014644_1	1.1\|40197\|34\|NZ_CP014644\|CRT	40197-40230	34	NZ_CP014644	Lysinibacillus sphaericus strain OT4b.25 plasmid unnamed, complete sequence	40197-40230	0	1.0
NZ_CP014644_1	1.2\|40263\|33\|NZ_CP014644\|CRT,PILER-CR,CRISPRCasFinder	40263-40295	33	NC_010381	Lysinibacillus sphaericus C3-41 plasmid pBsph, complete sequence	104976-105008	0	1.0
NZ_CP014644_1	1.2\|40263\|33\|NZ_CP014644\|CRT,PILER-CR,CRISPRCasFinder	40263-40295	33	MT075580	Lysinibacillus sphaericus strain SSII-1 plasmid pSSII-1, complete sequence	10163-10195	0	1.0
NZ_CP014644_1	1.2\|40263\|33\|NZ_CP014644\|CRT,PILER-CR,CRISPRCasFinder	40263-40295	33	NZ_CP014644	Lysinibacillus sphaericus strain OT4b.25 plasmid unnamed, complete sequence	40263-40295	0	1.0
NZ_CP014644_1	1.2\|40263\|33\|NZ_CP014644\|CRT,PILER-CR,CRISPRCasFinder	40263-40295	33	NZ_CP014857	Lysinibacillus sphaericus III(3)7 plasmid, complete sequence	58980-59012	0	1.0
NZ_CP014644_1	1.3\|40328\|35\|NZ_CP014644\|CRT,PILER-CR,CRISPRCasFinder	40328-40362	35	NC_010381	Lysinibacillus sphaericus C3-41 plasmid pBsph, complete sequence	105041-105075	0	1.0
NZ_CP014644_1	1.3\|40328\|35\|NZ_CP014644\|CRT,PILER-CR,CRISPRCasFinder	40328-40362	35	MT075580	Lysinibacillus sphaericus strain SSII-1 plasmid pSSII-1, complete sequence	10228-10262	0	1.0
NZ_CP014644_1	1.3\|40328\|35\|NZ_CP014644\|CRT,PILER-CR,CRISPRCasFinder	40328-40362	35	NZ_CP014644	Lysinibacillus sphaericus strain OT4b.25 plasmid unnamed, complete sequence	40328-40362	0	1.0
NZ_CP014644_1	1.3\|40328\|35\|NZ_CP014644\|CRT,PILER-CR,CRISPRCasFinder	40328-40362	35	NZ_CP014857	Lysinibacillus sphaericus III(3)7 plasmid, complete sequence	58913-58947	0	1.0
NZ_CP014644_1	1.4\|40395\|34\|NZ_CP014644\|CRT,PILER-CR,CRISPRCasFinder	40395-40428	34	NC_010381	Lysinibacillus sphaericus C3-41 plasmid pBsph, complete sequence	105108-105141	0	1.0
NZ_CP014644_1	1.4\|40395\|34\|NZ_CP014644\|CRT,PILER-CR,CRISPRCasFinder	40395-40428	34	NZ_CP014644	Lysinibacillus sphaericus strain OT4b.25 plasmid unnamed, complete sequence	40395-40428	0	1.0
NZ_CP014644_1	1.4\|40395\|34\|NZ_CP014644\|CRT,PILER-CR,CRISPRCasFinder	40395-40428	34	NZ_CP014857	Lysinibacillus sphaericus III(3)7 plasmid, complete sequence	58847-58880	0	1.0
NZ_CP014644_1	1.4\|40395\|34\|NZ_CP014644\|CRT,PILER-CR,CRISPRCasFinder	40395-40428	34	NC_019325	Vibrio anguillarum plasmid pJV, complete sequence	816-849	3	0.912
NZ_CP014644_1	1.2\|40263\|33\|NZ_CP014644\|CRT,PILER-CR,CRISPRCasFinder	40263-40295	33	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	201110-201142	7	0.788
NZ_CP014644_1	1.2\|40263\|33\|NZ_CP014644\|CRT,PILER-CR,CRISPRCasFinder	40263-40295	33	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	201150-201182	7	0.788
NZ_CP014644_1	1.2\|40263\|33\|NZ_CP014644\|CRT,PILER-CR,CRISPRCasFinder	40263-40295	33	MN693262	Marine virus AFVG_25M29, complete genome	34438-34470	8	0.758
NZ_CP014644_1	1.4\|40395\|34\|NZ_CP014644\|CRT,PILER-CR,CRISPRCasFinder	40395-40428	34	NC_012219	Clostridium botulinum plasmid pC2C203U28 DNA, complete sequence, serotype: type C, strain: (C)-203U28	95653-95686	8	0.765
NZ_CP014644_1	1.4\|40395\|34\|NZ_CP014644\|CRT,PILER-CR,CRISPRCasFinder	40395-40428	34	NZ_CP029459	Clostridium novyi strain 150557 plasmid pCN1, complete sequence	4718-4751	8	0.765
NZ_CP014644_1	1.4\|40395\|34\|NZ_CP014644\|CRT,PILER-CR,CRISPRCasFinder	40395-40428	34	NZ_CP029459	Clostridium novyi strain 150557 plasmid pCN1, complete sequence	124551-124584	8	0.765

1. spacer 1.1|40197|34|NZ_CP014644|CRT matches to NZ_CP014857 (Lysinibacillus sphaericus III(3)7 plasmid, complete sequence) position: , mismatch: 0, identity: 1.0

gaaagctaactagacaccctataagcatgtacca	CRISPR spacer
gaaagctaactagacaccctataagcatgtacca	Protospacer
**********************************

2. spacer 1.1|40197|34|NZ_CP014644|CRT matches to NC_010381 (Lysinibacillus sphaericus C3-41 plasmid pBsph, complete sequence) position: , mismatch: 0, identity: 1.0

gaaagctaactagacaccctataagcatgtacca	CRISPR spacer
gaaagctaactagacaccctataagcatgtacca	Protospacer
**********************************

3. spacer 1.1|40197|34|NZ_CP014644|CRT matches to NZ_CP014644 (Lysinibacillus sphaericus strain OT4b.25 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gaaagctaactagacaccctataagcatgtacca	CRISPR spacer
gaaagctaactagacaccctataagcatgtacca	Protospacer
**********************************

4. spacer 1.2|40263|33|NZ_CP014644|CRT,PILER-CR,CRISPRCasFinder matches to NC_010381 (Lysinibacillus sphaericus C3-41 plasmid pBsph, complete sequence) position: , mismatch: 0, identity: 1.0

gcaagatttataataagagatataaatggtaat	CRISPR spacer
gcaagatttataataagagatataaatggtaat	Protospacer
*********************************

5. spacer 1.2|40263|33|NZ_CP014644|CRT,PILER-CR,CRISPRCasFinder matches to MT075580 (Lysinibacillus sphaericus strain SSII-1 plasmid pSSII-1, complete sequence) position: , mismatch: 0, identity: 1.0

gcaagatttataataagagatataaatggtaat	CRISPR spacer
gcaagatttataataagagatataaatggtaat	Protospacer
*********************************

6. spacer 1.2|40263|33|NZ_CP014644|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP014644 (Lysinibacillus sphaericus strain OT4b.25 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gcaagatttataataagagatataaatggtaat	CRISPR spacer
gcaagatttataataagagatataaatggtaat	Protospacer
*********************************

7. spacer 1.2|40263|33|NZ_CP014644|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP014857 (Lysinibacillus sphaericus III(3)7 plasmid, complete sequence) position: , mismatch: 0, identity: 1.0

gcaagatttataataagagatataaatggtaat	CRISPR spacer
gcaagatttataataagagatataaatggtaat	Protospacer
*********************************

8. spacer 1.3|40328|35|NZ_CP014644|CRT,PILER-CR,CRISPRCasFinder matches to NC_010381 (Lysinibacillus sphaericus C3-41 plasmid pBsph, complete sequence) position: , mismatch: 0, identity: 1.0

tgcagcaaattaatgaaatgttatcagcccatata	CRISPR spacer
tgcagcaaattaatgaaatgttatcagcccatata	Protospacer
***********************************

9. spacer 1.3|40328|35|NZ_CP014644|CRT,PILER-CR,CRISPRCasFinder matches to MT075580 (Lysinibacillus sphaericus strain SSII-1 plasmid pSSII-1, complete sequence) position: , mismatch: 0, identity: 1.0

tgcagcaaattaatgaaatgttatcagcccatata	CRISPR spacer
tgcagcaaattaatgaaatgttatcagcccatata	Protospacer
***********************************

10. spacer 1.3|40328|35|NZ_CP014644|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP014644 (Lysinibacillus sphaericus strain OT4b.25 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tgcagcaaattaatgaaatgttatcagcccatata	CRISPR spacer
tgcagcaaattaatgaaatgttatcagcccatata	Protospacer
***********************************

11. spacer 1.3|40328|35|NZ_CP014644|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP014857 (Lysinibacillus sphaericus III(3)7 plasmid, complete sequence) position: , mismatch: 0, identity: 1.0

tgcagcaaattaatgaaatgttatcagcccatata	CRISPR spacer
tgcagcaaattaatgaaatgttatcagcccatata	Protospacer
***********************************

12. spacer 1.4|40395|34|NZ_CP014644|CRT,PILER-CR,CRISPRCasFinder matches to NC_010381 (Lysinibacillus sphaericus C3-41 plasmid pBsph, complete sequence) position: , mismatch: 0, identity: 1.0

cgttagcttatcctctgctttgattttttttaat	CRISPR spacer
cgttagcttatcctctgctttgattttttttaat	Protospacer
**********************************

13. spacer 1.4|40395|34|NZ_CP014644|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP014644 (Lysinibacillus sphaericus strain OT4b.25 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cgttagcttatcctctgctttgattttttttaat	CRISPR spacer
cgttagcttatcctctgctttgattttttttaat	Protospacer
**********************************

14. spacer 1.4|40395|34|NZ_CP014644|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP014857 (Lysinibacillus sphaericus III(3)7 plasmid, complete sequence) position: , mismatch: 0, identity: 1.0

cgttagcttatcctctgctttgattttttttaat	CRISPR spacer
cgttagcttatcctctgctttgattttttttaat	Protospacer
**********************************

15. spacer 1.4|40395|34|NZ_CP014644|CRT,PILER-CR,CRISPRCasFinder matches to NC_019325 (Vibrio anguillarum plasmid pJV, complete sequence) position: , mismatch: 3, identity: 0.912

cgttagcttatcctctgctttgattttttttaat	CRISPR spacer
ccttagcttatcctctgctttgatttttttcatt	Protospacer
* ****************************.* *

16. spacer 1.2|40263|33|NZ_CP014644|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 7, identity: 0.788

gcaagat-ttataataagagatataaatggtaat	CRISPR spacer
-tagaatgctataataagagatatagatggtgat	Protospacer
 .*..** .****************.*****.**

17. spacer 1.2|40263|33|NZ_CP014644|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 7, identity: 0.788

gcaagat-ttataataagagatataaatggtaat	CRISPR spacer
-tagaatgctataataagagatatagatggtgat	Protospacer
 .*..** .****************.*****.**

18. spacer 1.2|40263|33|NZ_CP014644|CRT,PILER-CR,CRISPRCasFinder matches to MN693262 (Marine virus AFVG_25M29, complete genome) position: , mismatch: 8, identity: 0.758

gcaagatttataataagagatataaatggtaat	CRISPR spacer
acaggtgctataataagaaataaaaatggtaaa	Protospacer
.**.*  .**********.*** *********

19. spacer 1.4|40395|34|NZ_CP014644|CRT,PILER-CR,CRISPRCasFinder matches to NC_012219 (Clostridium botulinum plasmid pC2C203U28 DNA, complete sequence, serotype: type C, strain: (C)-203U28) position: , mismatch: 8, identity: 0.765

cgttagct-tatcctctgctttgattttttttaat	CRISPR spacer
-accaactgcatcctctactttgatttttttcaat	Protospacer
 ...*.** .*******.*************.***

20. spacer 1.4|40395|34|NZ_CP014644|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP029459 (Clostridium novyi strain 150557 plasmid pCN1, complete sequence) position: , mismatch: 8, identity: 0.765

cgttagct-tatcctctgctttgattttttttaat	CRISPR spacer
-accaactgcatcctctactttgatttttttcaat	Protospacer
 ...*.** .*******.*************.***

21. spacer 1.4|40395|34|NZ_CP014644|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP029459 (Clostridium novyi strain 150557 plasmid pCN1, complete sequence) position: , mismatch: 8, identity: 0.765

cgttagct-tatcctctgctttgattttttttaat	CRISPR spacer
-accaactgcatcctctactttgatttttttcaat	Protospacer
 ...*.** .*******.*************.***

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP014643

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP014644

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection