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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP014475 Mycolicibacterium phlei strain CCUG 21000 chromosome, complete genome 2 crisprs DEDDh,csa3,cas3,WYL,DinG,PD-DExK 1 1 2 0

Results visualization

1. NZ_CP014475
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014475_1 558833-558915 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014475_2 1302762-1302856 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP014475_1 1.1|558862|25|NZ_CP014475|CRISPRCasFinder 558862-558886 25 NZ_CP014475.1 558901-558925 0 1.0

1. spacer 1.1|558862|25|NZ_CP014475|CRISPRCasFinder matches to position: 558901-558925, mismatch: 0, identity: 1.0

agcgtcggtggcctcggcaccctca	CRISPR spacer
agcgtcggtggcctcggcaccctca	Protospacer
*************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP014475_1 1.1|558862|25|NZ_CP014475|CRISPRCasFinder 558862-558886 25 NZ_CP054600 Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed1, complete sequence 56622-56646 3 0.88
NZ_CP014475_1 1.1|558862|25|NZ_CP014475|CRISPRCasFinder 558862-558886 25 NC_022590 Brevibacterium sp. Ap13 plasmid pAP13, complete sequence 1439-1463 3 0.88
NZ_CP014475_1 1.1|558862|25|NZ_CP014475|CRISPRCasFinder 558862-558886 25 NZ_CP017756 Cupriavidus malaysiensis strain USMAA1020 isolate pure plasmid unnamed1, complete sequence 107674-107698 4 0.84
NZ_CP014475_1 1.1|558862|25|NZ_CP014475|CRISPRCasFinder 558862-558886 25 NZ_CP040819 Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence 26648-26672 4 0.84
NZ_CP014475_1 1.1|558862|25|NZ_CP014475|CRISPRCasFinder 558862-558886 25 NZ_CP032346 Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence 1821056-1821080 4 0.84
NZ_CP014475_1 1.1|558862|25|NZ_CP014475|CRISPRCasFinder 558862-558886 25 KU935731 Mycobacterium phage Phrann, complete genome 5693-5717 4 0.84
NZ_CP014475_1 1.1|558862|25|NZ_CP014475|CRISPRCasFinder 558862-558886 25 KX756439 Mycobacterium phage PhancyPhin, complete genome 5693-5717 4 0.84
NZ_CP014475_1 1.1|558862|25|NZ_CP014475|CRISPRCasFinder 558862-558886 25 NC_047955 Pseudomonas phage Nerthus, complete genome 25568-25592 5 0.8

1. spacer 1.1|558862|25|NZ_CP014475|CRISPRCasFinder matches to NZ_CP054600 (Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.88

agcgtcggtggcctcggcaccctca	CRISPR spacer
ggcttcggcggcctcggcaccctca	Protospacer
.** ****.****************

2. spacer 1.1|558862|25|NZ_CP014475|CRISPRCasFinder matches to NC_022590 (Brevibacterium sp. Ap13 plasmid pAP13, complete sequence) position: , mismatch: 3, identity: 0.88

agcgtcggtggcctcggcaccctca	CRISPR spacer
atcctcggtggcctcggcatcctca	Protospacer
* * ***************.*****

3. spacer 1.1|558862|25|NZ_CP014475|CRISPRCasFinder matches to NZ_CP017756 (Cupriavidus malaysiensis strain USMAA1020 isolate pure plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

agcgtcggtggcctcggcaccctca	CRISPR spacer
acggtcggtggcctcggcacccttt	Protospacer
*  ********************. 

4. spacer 1.1|558862|25|NZ_CP014475|CRISPRCasFinder matches to NZ_CP040819 (Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence) position: , mismatch: 4, identity: 0.84

agcgtcggtggcctcggcaccctca	CRISPR spacer
ggcggcggcggcctcggcaccctcc	Protospacer
.*** ***.*************** 

5. spacer 1.1|558862|25|NZ_CP014475|CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.84

agcgtcggtggcctcggcaccctca	CRISPR spacer
ggcggcggtgccctcggcaccctcc	Protospacer
.*** ***** ************* 

6. spacer 1.1|558862|25|NZ_CP014475|CRISPRCasFinder matches to KU935731 (Mycobacterium phage Phrann, complete genome) position: , mismatch: 4, identity: 0.84

agcgtcggtggcctcggcaccctca	CRISPR spacer
cgcggcggtggcctcggcgccctcg	Protospacer
 *** *************.*****.

7. spacer 1.1|558862|25|NZ_CP014475|CRISPRCasFinder matches to KX756439 (Mycobacterium phage PhancyPhin, complete genome) position: , mismatch: 4, identity: 0.84

agcgtcggtggcctcggcaccctca	CRISPR spacer
cgcggcggtggcctcggcgccctcg	Protospacer
 *** *************.*****.

8. spacer 1.1|558862|25|NZ_CP014475|CRISPRCasFinder matches to NC_047955 (Pseudomonas phage Nerthus, complete genome) position: , mismatch: 5, identity: 0.8

agcgtcggtggcctcggcaccctca	CRISPR spacer
agcgtcggtagcctcggcaccgaag	Protospacer
*********.***********   .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2010112 : 2017872 8 Bacillus_phage(16.67%) NA NA
DBSCAN-SWA_2 5063844 : 5118734 53 Burkholderia_virus(25.0%) protease,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage