CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013234	Collimonas pratensis strain Ter91 chromosome, complete genome	3 crisprs	WYL,cas3,csa3,DEDDh,DinG,RT	0	0	8	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013234_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013234_1

1463238-1463392

Orphan

Consensus_repeat	Method
AAATAAATTCGACTCTGACCCCAATTGATT	PILER-CR
AAATAAATTCGACTCTGACCCCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP013234_1

>merge|NZ_CP013234|1|1463238-1463392|PILER-CR,CRISPRCasFinder
ACTCTGACCCCAATTGACGGACCACGGAGCACCAGCCGCAGCAAACCGATGCAAATAAATTCGACTCTGACCCCATTTAATTCAGTTAGCTGGCCACGGAGCATGAACAGCAGCAAGTCGAAGAAAATCAATTCGACTCTGACCCCAATTGATTA

>NZ_CP013234|1|1|1463238-1463392|PILER-CR
ACTCTGACCCCAATTGACGGACCACGGAGCA	CCAGCCGCAGCAAACCGATGCAAATAAATTCGACT
CTGACCCCATTTAATTCAGTTAGCTGGCCAC	GGAGCATGAACAGCAGCAAGTCGAAGAAAATCAATTCGACTC
TGACCCCAATTGATTA

>NZ_CP013234|1|1|1463290-1463384|CRISPRCasFinder
AAATAAATTCGACTCTGACCCCA	TTTAATTCAGTTAGCTGGCCACGGAGCATGAACAGCAGCAAGTCGAAGA
AAATCAATTCGACTCTGACCCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013234.1\|WP_061938612.1\|1473373_1474237_-\|choline-dehydrogenase	unknown	unknown	gnl\|CDD\|286740
NZ_CP013234.1\|WP_061938593.1\|1464832_1466209_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|182388
NZ_CP013234.1\|WP_061938579.1\|1456814_1458719_+\|(Fe-S)-binding-protein	unknown	unknown	gnl\|CDD\|371832
NZ_CP013234.1\|WP_099047274.1\|1458745_1459900_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP013234.1\|WP_061938573.1\|1454208_1454733_+\|4-vinyl-reductase	unknown	unknown	gnl\|CDD\|198057
NZ_CP013234.1\|WP_061938609.1\|1471977_1473255_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|181039
NZ_CP013234.1\|WP_061938588.1\|1463415_1464273_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270357
NZ_CP013234.1\|WP_099047171.1\|1467056_1468490_-\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NZ_CP013234.1\|WP_061938591.1\|1464293_1464704_-\|NirD/YgiW/YdeI-family-stress-tolerance-protein	unknown	unknown	gnl\|CDD\|225653
NZ_CP013234.1\|WP_061938602.1\|1468501_1470481_-\|MacB-family-efflux-pump-subunit	unknown	unknown	gnl\|CDD\|182528
NZ_CP013234.1\|WP_061938576.1\|1454748_1456812_+\|NADH:flavin-oxidoreductase	unknown	unknown	gnl\|CDD\|240085
NZ_CP013234.1\|WP_061945917.1\|1462047_1463169_+\|hybrid-cluster-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|99811
NZ_CP013234.1\|WP_061938585.1\|1459896_1460682_+\|drug:proton-antiporter	unknown	unknown	gnl\|CDD\|224997
NZ_CP013234.1\|WP_061938567.1\|1451914_1453183_+\|serine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|237280
NZ_CP013234.1\|WP_061938607.1\|1470483_1471680_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|183211
NZ_CP013234.1\|WP_061938596.1\|1466201_1466867_-\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NZ_CP013234.1\|WP_061945919.1\|1460737_1462021_+\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	unknown	unknown	gnl\|CDD\|176893
NZ_CP013234.1\|WP_061938564.1\|1450431_1451448_-\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
NZ_CP013234.1\|WP_061938616.1\|1474788_1475979_+\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226643
NZ_CP013234.1\|WP_061938570.1\|1453199_1454174_+\|membrane-dipeptidase	unknown	unknown	gnl\|CDD\|366534

Protein	Function_ID	Function_description	E-value
NZ_CP013234.1\|WP_061938612.1\|1473373_1474237_-\|choline-dehydrogenase	gnl\|CDD\|286740	pfam09694, Gcw_chp, Bacterial protein of unknown function (Gcw_chp). This entry represents a conserved hypothetical protein about 240 residues in length found so far in Proteobacteria including Shewanella oneidensis and Ralstonia solanacearum, usually as part of a paralogous family. The function is unknown.	4.37343e-39
NZ_CP013234.1\|WP_061938593.1\|1464832_1466209_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	2.04066e-72
NZ_CP013234.1\|WP_061938579.1\|1456814_1458719_+\|(Fe-S)-binding-protein	gnl\|CDD\|371832	pfam11982, DUF3483, Domain of unknown function (DUF3483). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 230 amino acids in length. This domain is found associated with pfam02754.	1.26367e-96
NZ_CP013234.1\|WP_099047274.1\|1458745_1459900_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	1.84899e-57
NZ_CP013234.1\|WP_061938573.1\|1454208_1454733_+\|4-vinyl-reductase	gnl\|CDD\|198057	smart00989, V4R, The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons.	1.8662e-12
NZ_CP013234.1\|WP_061938609.1\|1471977_1473255_+\|amidohydrolase-family-protein	gnl\|CDD\|181039	PRK07572, PRK07572, cytosine deaminase; Validated.	0
NZ_CP013234.1\|WP_061938588.1\|1463415_1464273_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270357	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to betaine compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine and proline betaine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.20054e-123
NZ_CP013234.1\|WP_099047171.1\|1467056_1468490_-\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	2.72849e-63
NZ_CP013234.1\|WP_061938591.1\|1464293_1464704_-\|NirD/YgiW/YdeI-family-stress-tolerance-protein	gnl\|CDD\|225653	COG3111, COG3111, Periplasmic protein with OB-fold [Function unknown].	2.89472e-19
NZ_CP013234.1\|WP_061938602.1\|1468501_1470481_-\|MacB-family-efflux-pump-subunit	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP013234.1\|WP_061938576.1\|1454748_1456812_+\|NADH:flavin-oxidoreductase	gnl\|CDD\|240085	cd04734, OYE_like_3_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.	0
NZ_CP013234.1\|WP_061945917.1\|1462047_1463169_+\|hybrid-cluster-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|99811	cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins which act as electron carriers in photosynthesis and ferredoxins which participate in redox chains from bacteria to mammals. Ferredoxin reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	6.72746e-131
NZ_CP013234.1\|WP_061938585.1\|1459896_1460682_+\|drug:proton-antiporter	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	5.75745e-24
NZ_CP013234.1\|WP_061938567.1\|1451914_1453183_+\|serine-hydroxymethyltransferase	gnl\|CDD\|237280	PRK13034, PRK13034, serine hydroxymethyltransferase; Reviewed.	0
NZ_CP013234.1\|WP_061938607.1\|1470483_1471680_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	2.48898e-106
NZ_CP013234.1\|WP_061938596.1\|1466201_1466867_-\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	6.62243e-76
NZ_CP013234.1\|WP_061945919.1\|1460737_1462021_+\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	gnl\|CDD\|176893	cd08884, RHO_alpha_C_GbcA-like, C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-terminal domain which binds the non-heme Fe(II). The Fe(II) is co-ordinated by conserved His and Asp residues. GbcA is involved in glycine betaine (GB) catabolism in Pseudomonas aeruginosa; it may remove a methyl group from GB via a dioxygenase mechanism, producing dimethylglycine and formaldehyde. This subfamily belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket.	9.92083e-97
NZ_CP013234.1\|WP_061938564.1\|1450431_1451448_-\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	1.03804e-128
NZ_CP013234.1\|WP_061938616.1\|1474788_1475979_+\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226643	COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism].	1.44609e-169
NZ_CP013234.1\|WP_061938570.1\|1453199_1454174_+\|membrane-dipeptidase	gnl\|CDD\|366534	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19).	7.64225e-120

>NZ_CP013234.1|WP_061945917.1|1462047_1463169_+|hybrid-cluster-NAD(P)-dependent-oxidoreductase
MDINKLNRPNFWDAMPPLWNSDREDSLVCCQVRAETHDVKSFFFVTPDGSGFIFQPGQFITLELEINDEAINRCYTVSSSPARPHAISITVKRVPGGPVSNWLHDNLKVGDKVKVLQPAGEFTCAIHPANKYLFLSAGSGITPLMSMTRAHHDLCDDRDIVFIHSARTPDDIIFERELGLIAASQQNFKTRFICERLGQRRDWPGPTGMLSLAALKLMAPDFMEREIFVCGPAPYMKAVRNMLDEAGFERTHYHEESFSFETLQLETEQASTANGATPISSELAALTGFEITFQKSNRQIVCGPQQHVLEAARNAGVRLASSCAQGMCGTCKVKLISGSVDMQHKGGIRQREIDQGMVLLCCSKPLSNLVVDK
>NZ_CP013234.1|WP_061945919.1|1460737_1462021_+|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha
MKVSKEIQALIAERLPGHSLDAPFYLNPEIFEMDIREIFGKHWIHVAVDPDIPEPGDYVTVEIGLNSIVVVRDDDMAVRAYHNVCRHRGARLCSEHKGSVGNLVCPYHQWTYNLSGELIYAEHMGEKFDRCKHSLKSVHVENLAGLIFICLAEQPPADFAVMREAMAPYLLPHGLQDCKIAKQVDLIEEGNWKLTMENNRECYHCATNHPELTASLFEFGFGYQTAPGNAEQIGEFNRLAAERCAEWERGGLPSAEIERLDELVSGFRTQRLPLDRAGESQTLDGKVACGMLLGQFERADLGGLSFWTQPNSWHHFMSDHIVSFSVLPLSAERTLVRTKWLVHKDAREGIDYQLDNLTAVWNATNDQDKRLVELSQQGARSSAYQPGPYSPFTEGLVEKFCTWYIGRLQAGLSAPETASVNVLRRMD
>NZ_CP013234.1|WP_061938585.1|1459896_1460682_+|drug:proton-antiporter
MKQLAIRRIAVLVSIGRHPVSGVPRYSRNDAAALGLAHDLARHALDISIDVIHAGQADNPALPEYLALGATRVSVIEPAADQDVLPALQEQLQGYDLVLCGSRAESGEASGMLPYRLAARLNLPLLAGVIAVTSGSDAIVAEQFLPKGRRREVVLSLPALLTVHSLAPSRLRYAYARLRAGRISSQAFPAGTGTAGSEWRIENVKALPRKLAAPEKRSGHARMQAATVAESRGGKVLQEGSAADKAQAVLAYLREHHLVDY
>NZ_CP013234.1|WP_099047274.1|1458745_1459900_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MATASCIRRIDPRRPFTLNADGLKRIVLGQAGAAGLDLQVFPLAPAHQSIKPQRLAADAQLKKCLLAVAHSDRGSLDEHARQAVAAAALLADGATEVVLLVFGELNDDAAALGADRCVVLPQFGSHRFAPEAELVALIALLEELLPAHVFMADNGVADSDLGRRLGAAMNAASIATHVVEIKQEGLAVYRQRGSLMARRELTAIVLLEADAVDARLPFLGRGQRAEQLAEALGIAASATSAGAFTDLGVKTMAASQVALDEADFIVSAGNGVGDVTLFNALAQVLDAAVGASRVAVDDGKFERDKQIGATGKTVSASAYLAFGISGAVQHLQGIKDCRHVIAVNLDASAPMIKRADLSIIGDAQELMAALLEQVRQARAMEVAS
>NZ_CP013234.1|WP_061938579.1|1456814_1458719_+|(Fe-S)-binding-protein
MSAAASSLNLLITVLFWLSVAGLTVGMARRAALWRAGREAPVAWLGLLAIPKRYFVDLHHVVARDPYIARTHVATAGGAIAAMALVALNYGLMLYAAALNTAIGLCALLMLVGVLFVWHRRRTPPARLSRGAWMRLPWMLAAFALGLLALGLIPLQLVSGASALATVVLLGLGAWTLTIGATRGGPMKHALAGLLHLAFHPRPERFKQVAGGTPTTALKVLKLEQGELGVGKPVEFRWNQLLSFDACVQCGKCEAACPAFAAGQPLNPKKLIQDMVTGMAGGSDANFAGSPYPGIPLGGHQGSPLEAIVPGLISSDTLWSCTTCRACVQECPMLIEHVDAIVDMRRHQTLQFGAVPGKGPEVLANLRETGSAGGFDLGVRYNWALDLNVRQISAGQPVDVLLLVGEGGFDMRYQRSLRALVKVLQAAQVDFAVLGSLENDCGDVARRLGDEATFQNLAQQMIAQLSAFTFKRIVTADPHVMHCLRNEYPALGGHYEVLHHTGFMASLVSQGKLKPRAAADSEQRFTYHDPCYLGRYNGEIEAPRELLKLLGLSLHEMERHGMRGRCCGGGGGAPLTDIPGKQRIPDIRIHDARTVRADTVVVACPNCTAMLEGVVGPRPEVRDIAELLAAALEH
>NZ_CP013234.1|WP_061938576.1|1454748_1456812_+|NADH:flavin-oxidoreductase
MRYPTLFSPLTLNQITLRNRVVSTAHAEVYAEAGGLPGERYIRYYEEKAKGGLGLAICGGSSTVSIDSPQGWWKSVNLTTDKVIEPLSRLAEAMHRHGAKIMIQATHMGRRTAWHGENWPHLVSPSGIREPVHRGNAKIIEIEEIRRIVADFAAAAKRVKQAGMDGIEISAAHQQLIDQFWSPRVNQRTDEYGGSLENRMRFGIEVLTAVREAVGKDFCVGMRMCGDEFHEDGVDHETAKQIAQALSASGLIDFLSVVGSGADTHNTLANCMPPMALPPEPFVHLAAGIKAVSSVPVMHAQSIRDAGQAERILSSGMVDLVGMTRAQIADPHMVIKIRDGREDEIKQCVGANYCIDRQYNGLDVLCVQNAATSREQSMPHQIAKSRGPKRKVVVVGAGPAGLEAARVARERGHEVVLFERSEAVGGQINLAAKAPQREQMAGIVRWFDMETKRLGVDRRLGVDADEAMILAERPDIVVLATGGSNYTSQVADWGIAEGLSVSSWDILQGRVAPGKNVLVYDGISTHAGFGVADFLASRGSLVEIVTPDVKIADDTGGTTFPIFYRRLYAQGVIPTPNYWLDRVYAEGDKKVAVLRNEYTEVQEERVVDQVVIENGILPNDQLYWSLKPQSVNRGQIDVNKLFAAEPQPALSEPLGDGRFLLFRVGDCISMHNIHAAIYDSLRLCKDF
>NZ_CP013234.1|WP_061938573.1|1454208_1454733_+|4-vinyl-reductase
MQPQLPIEVDAETGVWTTDKLPMLYVPRHFFTNNHTAVEAALGREKYAQILYDAGHKSAYYWCEKEARQHDMSGLDVYKHYLKRLSQRGWGLFSFTEVDAANASASIKLVNSSFVLQQPEAQGKLCYMFAGWFAGAMDWVSDTTGNPRRSVCSETQCGGEGHAHCVFTVTPLSA
>NZ_CP013234.1|WP_061938570.1|1453199_1454174_+|membrane-dipeptidase
MSNLHQQSLVIDGLNISKWERPVFEDMKKGGLSAVNCTISVWENFQGTVGNVVDMKNLIRDNADLLTLVRGVDDITRAKKEGRTGVILGFQNAHAFEDNLGYIEVFAELGVRVVQLCYNTQNLIGTGCYERDGGLSGFGREVIAEMNRVGIMVDLSHVGGNTSTEAILASNKPVCYSHCLPSGLKQHPRNKSDEQLKFIADHGGFIGVTMFPPFLKRGSSANVDDYVEAFDYIINLVGDDCVGIGTDFTQGYGKPFFEWLTHDKGRHRRLTDFGTVINPEGFRTIGDFPNLTTAMERAGWKESRIRKVLGENWLRVFGEVWTAC
>NZ_CP013234.1|WP_061938567.1|1451914_1453183_+|serine-hydroxymethyltransferase
MTLPAFSQSLAERDAPIKRAIDLELQRQQNQIEMIASENIVSRAVLEAQGSVLTNKYAEGYPGKRYYGGCEFADQVETLALERVKQLFGAKFANVQPHSGAQANGAVMLALVKPGETVLGMSLDAGGHLTHGARPAMSGKWFNAVQYGVNRDTYLIDYDEVEALAKLHKPRLIIAGYSAYPRQLDFARFRAIADSVDALLMVDMAHIAGLVATGHHPSPVPHAHVVTSTTHKTLRGPRGGFVLTNDEDIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALEPEFKEYIGEVVANAKALGEVLLAGGVDLVTGGTENHLLLVDLRPKGLKGTQVEHALERAGITCNKNGIPFDTEKPTVTSGIRLGTPAGTARGFGVDEFRTIGRLTVEIFDALARKPEGDAEVEQKVLTEVQALCKRFPIY
>NZ_CP013234.1|WP_061938564.1|1450431_1451448_-|GlxA-family-transcriptional-regulator
MSKSTSTSFTHFAFMPLNNFTMLAFSNAIEVLRMANYLEGKPLYRWSIISPEGGAVSASNGLAVTTMRADQCPAADAVFVCGGTQIASAINSATLDLLRNLAKQGKTLGSLCTGAFALAEAGLLDGYTCATHWENLSSIKRSYPAIAFAPDLFVVDRDRITCTGGIAPLDMMLNLISGQVGKTTIAAIADQFILEHVRDHKDQQRVPLTVRMTSARPAMVEVVSLMEANIEEPLSLDELAQLSNSSPRQLQRMFKEHMGMSPTHYYLTLRLRKARELLRQTDMSILSITVACGFQSACHFSKTYREIFSVAPSTERRQQAAVPAALLATQNQQPAAFV
>NZ_CP013234.1|WP_061938588.1|1463415_1464273_+|glycine-betaine-ABC-transporter-substrate-binding-protein
MNPLRKLCCLVLALTCLASTGAANAEPKPIIKIGYVEGWSDSVATTYVAAQIIRQDLGYEVKLIPVSAGLMWQGVARGDLDATMSAWLPTTQGAYYEKLKDKVVNLGVNYPGARIGLIVPAYVNVSSIADLTAQKAAFEGRIVGIDAGAGVMTKTELAIKEYGLDYKLLPSSGSGMVAELERSIRNNKAIAVTGWVPHWMFAKWKLKFLDDPKKVYGEAEHVDNIANPGLATRAKPVNDLLKNFSWKPGEIDSVMLAVENGAKPEAAAKQWIDAHPQRVSQWLQK
>NZ_CP013234.1|WP_061938591.1|1464293_1464704_-|NirD/YgiW/YdeI-family-stress-tolerance-protein
MNRIGKFLAITILAGAATVAAAQGYNGPSSASAAPASARYAGPSTVPGMTAKELLANGVDDQYVTLTGKLVRHTGGDHYVLADASGEIRADISAKHFPQDQVIDANTVVELEGKFDKERFGSSKLEVKRIKVIAAK
>NZ_CP013234.1|WP_061938593.1|1464832_1466209_-|two-component-sensor-histidine-kinase
MPETPSMPPGAKAPSHSLRLRLLWTIVGTSALLWLASLTIMVFIAWNETNDVFDDALKESSNLIVAATTDFNERGLLQQTEAAAGEPHKVDIQYQIVIDGRVIQRTARAPATPFVAGFEHRKGFRNIDIDGKRWRIYVVRSKDAHFEVQVGQKFKKRLDILEELAENLALPVLLLLAVLTALSWHCVSRVMKPINNTAHAIATKSRDDLTPVSLDGQPRELRPIVGALNGVLLRLQNALQAERRFTADAAHELRTPLAALRMHVQLLQRQHSDLSAPFQKLRDDIDRSTALVENLLALARLDPASPDKLERQQVVLQPFLQELRRTHAAIARQRRINVNIDTQLEQLQMNPEMMHIALRNLLDNALRYCPPHSTVKIACSATSGLLRIAVCDDGPGVDARQRNRLSERFFRVLGSGEQGSGLGLSIVRRIAELHGARLSFGSGLDGKGLGVFLDFPSV
>NZ_CP013234.1|WP_061938596.1|1466201_1466867_-|response-regulator
MRILLVEDDPSLGATVQSWLQLDGYAVDWVLRGDSAATALQTHRYDCVLLDRGLPGTSGDELLRHLRNGKDLVPVLIITARDTLADRIEGLDLGADDYLIKPFDLEEMSARIRAAVRRHASQANNVLKHGEIELDLASKRVTLAGEPVQLTVRELAVLHALMLRRQHIVKRAQIEEALYGWGDEVESNAIEVHIHHLRKKLGSGLIVTVRGLGYRLKDEHA
>NZ_CP013234.1|WP_099047171.1|1467056_1468490_-|efflux-transporter-outer-membrane-subunit
MRNFNTTLCLLAASILAGCSAMHSPYQPAALSTPASWQNQPQPVAGDTVLHDRWWRNFNDPQLDQLIEQALVRNNDLAAAAILVRRAQLQAGLATTNPTVSLSLNSSNSRNLNGSSGALPNLPGAPSSSRSQALTASVAYEVDLWGKLASQRDAAQWEALATAEDRDSAALSLIGTTAGLYWKIANLEQRIALSEQSIAYVAKILQLVRVQYDAGAVSSLEVLEAERSLASQQASHTLLLQDMVETRSALAILFDGPPETQDSGHYRLAADLLPAVDPGLPAELLARRPDLRAAELRLRKTLSNADAVRAGYYPTFSLTGSLGSSSTSLQNLLQNPVGTLASGLTFPFLQWDQMQLNIAVSKVDYEKASIDFRQTFYKALRDVEIALSARSQFQEQGIRLAQSLAAARRIESLYQERYRAGSVALKIWLDAQETLRSAESAVADNNLNLLNSQVKLYQALGGDMKVAAANPASAERP
>NZ_CP013234.1|WP_061938602.1|1468501_1470481_-|MacB-family-efflux-pump-subunit
MKPALLELNGLYRRFPSGEETVTVLNNINLTIAAGEMVALVGPSGSGKSTLMNILGCLDRPSSGSYHVAGQATGDMPPDALAQLRREHFGFIFQRYHLLPDLDAASNVEIPAIYAGKPAAARKQRAHELLARLGLANRTHHRPSQLSGGQQQRVSIARSLMNGGQVILADEPTGALDSHSGQEVIKILQELHAEGHTVIIVTHDMHVAEYAQRIIEISDGEIIADRPSKSGGSSTAAQPAAAGAQRPQIDLQQESSWRATGASLIEACRMALLAMRSHRLRSFLTMLGIIIGIASVVSVVALGEGSRQQILKDISFLGTNNITIYPGKDWGDEKAAAVRTLVSADADVLARQPYADSATPGVTTAATVRYRNISVSASLQGVGEQHFRVYGITMAEGRSFTPDSIRHQLQEVVIDHNTRQKLFGSRDDPIGQVLMLGSIPSRIIGVAKKESNSFGGGGSNLTLWVPYTTAQTRIIGKSALQSITVRINDAASPAAAEKSIVKLLTQRHGSKDFFILNSDSIRKTIESTTRTMTLLVSMIALISLAVGGIGVMNIMLVSVTERIQEIGVRMAVGARQGDIMRQFLIEAVLVCLLGGVLGIGLALGIGVLFASFGGSFQMHYSLTSIVVACTCSTLIGIIFGFLPARNAARLDPVEALARE
>NZ_CP013234.1|WP_061938607.1|1470483_1471680_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MRLLKKKSLVYFVSTGLLLLLAFGLYQHFFSGSKEPQYLTAPVTVGDIQDTVLANGSLEALQQVNVGAQVSGQLKSLKVVLGEEVKKGQLVAEIDSLTQQNALQNAQAALSQVRAQLRSKQASLVQARSNFARQQRLLAGEAGSRENFETAEATLQSTLADIDSLNAQIEQAKITVSTAMLNLGYTKITAPMDGKVVSIVTKEGQTVNSAQLTPTIIILAELNTMTVKALVSEADVIRVKPQQPVFFTILGDPDHRFNGILRSVEPAPDSISSDGSDKTGKTAATAAPVYYNALFDIPNPDNKLRISMTAQVSIVLNEAKGALTIPSTALGERGKDGRYQVKVLQTKDGKHTVATRQVRIGINNIQAQVLDGLKAGEKVIVGDGGDKPAEEQATMIMG
>NZ_CP013234.1|WP_061938609.1|1471977_1473255_+|amidohydrolase-family-protein
MDLLIRNASLPNGRTGVDIAIAGGRINAVGVALAVVAEQEIDAGGNLVTPPFVDAHFHMDATLSYGLPRVNSSGTLLEGIALWGELKPKLTQEALVARAMQYCDWAVARGLLAIRSHVDICDDRLLAVEALLHVKRRVAPYLDLQLVAFPQDGLLRSPNAFANLKRAIAMGVDVVGGIPHFERTMAEGAESIKLLCELAAEKGLRVDMHCDESDDPMSRHIETLAFHTRRLGLHGLVAGSHLTSMHSMDNYYVSKLLPLIYEAGVAAIANPLINITLQGRHDTYPKRRGMTRVPELLAAGIEVAFGHDCVMDPWYSLGSGDMLEVAHMGLHVAQMTGQEAMHACFMAVTETPARILGLGGYGLTPGCNADLVVLDAGCTVEAIRLRAGRRYVIRRGKVISQSPAAQATLSLPGRPAALDFRLHAA
>NZ_CP013234.1|WP_061938612.1|1473373_1474237_-|choline-dehydrogenase
MFQKFNSIRLTPWLAAMLACALHLPALAQTADSAGAPAAAPPAAAAAPASPFTANVTIASQYVSRGFRQTWGKPAIQGGVDYAHPSGLFAGTWMSSVSDHFIENGSVEWDLYGGYTGSAGDLTYTGQIYYYVYPGAEASFAHTKYNYGEAVASLTYKWFNVKYWLTYTPDYFGYNSATLGIGTGQHSRGSGYLDLNGTFDLGSGYSLLLHYGNERVRNFSAYSFQDGKVALTKAFDGGWSVTGAVTKGWGKNGVYDRYTTGVLNSAGVAEVSNPLATTLVLSLTKTF
>NZ_CP013234.1|WP_061938616.1|1474788_1475979_+|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein
MKSAKVVVDRLYKVFGNNPQLALSMLEKGHSKDKIFAETGQVVGVQNVSFEVQEGEIFVLMGLSGSGKSTLIRLINRLVDPSAGNVVVDGQNVAQMTNSQLIKLRRRDMSMVFQSFALMPHRTVLSNASFGLEVAGTGRKERERRTMAVLEQVGLAPFANKLPCELSGGMQQRVGLARALAVNPSLMIMDEAFSALDPLKRKEMQDVLLDLQKEQQRTIIFVSHDLEEALRIGSRIAIMEGGRLVQVGTAQEIIDNPAEEYVRAFFDGVDTNRYLTAGDLMQANAVPLVASASEVHANGDLYQRSRSDFAFVVDGARKVQGIVATRRHADASGNLQASGMDRIEVIHHRSNLEDVMDKLIVSRSPLPVVDGDGCYCGAISQAMVLKALSTSRGSHV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP013234_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013234_2

1557885-1558082

Orphan

Consensus_repeat	Method
GTCGCCGCTGCCGACGATCGAGAC	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP013234_2

>merge|NZ_CP013234|2|1557885-1558082|CRISPRCasFinder
GTCGCCGCTGCCGACGATCGAGACATGGGTGCTTTCCGCCATCAGGTCGAAGCCGTCGTAGTCGCCGCTGCCGGCGATCGAGACGCGCAGGTCGCGGGTCCTGCCCTTGACCTTGATATCGCCGGCGCCGGCGATGGAAGCATTGACGTTAGGCGCATTCAGCTCGCCGCTGACGGTGCCGGAGCCGGCGATCGAGAT

>NZ_CP013234|2|2|1557885-1558082|CRISPRCasFinder
GTCGCCGCTGCCGACGATCGAGAC	ATGGGTGCTTTCCGCCATCAGGTCGAAGCCGTCGTA
GTCGCCGCTGCCGGCGATCGAGAC	GCGCAGGTCGCGGGTCCTGCCCTTGACCTTGAT
ATCGCCGGCGCCGGCGATGGAAGC	ATTGACGTTAGGCGCATTCAGCTCGCCGCTGAC
GGTGCCGGAGCCGGCGATCGAGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013234.1\|WP_061938842.1\|1564031_1565021_+\|CysB-family-HTH-type-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237173
NZ_CP013234.1\|WP_150119641.1\|1560007_1560283_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013234.1\|WP_061938829.1\|1558491_1559910_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP013234.1\|WP_061938847.1\|1567845_1568571_-\|arginyltransferase	unknown	unknown	gnl\|CDD\|234939
NZ_CP013234.1\|WP_061938804.1\|1547814_1548825_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|226077
NZ_CP013234.1\|WP_061938807.1\|1549332_1550973_-\|aromatic-amino-acid-lyase	unknown	unknown	gnl\|CDD\|376303
NZ_CP013234.1\|WP_061938801.1\|1546975_1547551_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|369095
NZ_CP013234.1\|WP_061938835.1\|1560352_1560676_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013234.1\|WP_167595226.1\|1562033_1562930_+\|sulfate-ABC-transporter-permease-subunit-CysW	unknown	unknown	gnl\|CDD\|226665
NZ_CP013234.1\|WP_061938844.1\|1565425_1566637_+\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350237
NZ_CP013234.1\|WP_082792664.1\|1554626_1556870_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|143478
NZ_CP013234.1\|WP_061938840.1\|1562926_1564021_+\|sulfate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213263
NZ_CP013234.1\|WP_061938813.1\|1552435_1553758_+\|C4-dicarboxylate-transporter-DctA	unknown	unknown	gnl\|CDD\|183850
NZ_CP013234.1\|WP_014007003.1\|1545818_1546034_+\|TOBE-domain-containing-protein	unknown	unknown	gnl\|CDD\|226113
NZ_CP013234.1\|WP_061938810.1\|1550990_1552229_-\|allantoate-amidohydrolase	unknown	unknown	gnl\|CDD\|237248
NZ_CP013234.1\|WP_061938816.1\|1553876_1554572_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP013234.1\|WP_061938823.1\|1556985_1557744_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP013234.1\|WP_061938837.1\|1561072_1561948_+\|sulfate-ABC-transporter-permease-subunit-CysT	unknown	unknown	gnl\|CDD\|131194
NZ_CP013234.1\|WP_061938796.1\|1546061_1546973_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|376350
NZ_CP013234.1\|WP_061945936.1\|1566697_1567741_-\|quinone-dependent-dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235388

Protein	Function_ID	Function_description	E-value
NZ_CP013234.1\|WP_061938842.1\|1564031_1565021_+\|CysB-family-HTH-type-transcriptional-regulator	gnl\|CDD\|237173	PRK12684, PRK12684, CysB family HTH-type transcriptional regulator.	1.49926e-167
NZ_CP013234.1\|WP_167595226.1\|1562033_1562930_+\|sulfate-ABC-transporter-permease-subunit-CysW	gnl\|CDD\|226665	COG4208, CysW, ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism].	4.02778e-158
NZ_CP013234.1\|WP_061938829.1\|1558491_1559910_-\|histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	9.26993e-42
NZ_CP013234.1\|WP_061938847.1\|1567845_1568571_-\|arginyltransferase	gnl\|CDD\|234939	PRK01305, PRK01305, arginyl-tRNA-protein transferase; Provisional.	3.23219e-143
NZ_CP013234.1\|WP_061938804.1\|1547814_1548825_+\|IS110-family-transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.69755e-28
NZ_CP013234.1\|WP_061938807.1\|1549332_1550973_-\|aromatic-amino-acid-lyase	gnl\|CDD\|376303	pfam00221, Lyase_aromatic, Aromatic amino acid lyase. This family includes proteins with phenylalanine ammonia-lyase, EC:4.3.1.24, histidine ammonia-lyase, EC:4.3.1.3, and tyrosine aminomutase, EC:5.4.3.6, activities.	0
NZ_CP013234.1\|WP_061938801.1\|1546975_1547551_+\|alpha/beta-hydrolase	gnl\|CDD\|369095	pfam06821, Ser_hydrolase, Serine hydrolase. Members of this family have serine hydrolase activity. They contain a conserved serine hydrolase motif, GXSXG/A, where the serine is a putative nucleophile. This family has an alpha-beta hydrolase fold. Eukaryotic members of this family have a conserved LXCXE motif, which binds to retinoblastomas. This motif is absent from prokaryotic members of this family.	2.14241e-54
NZ_CP013234.1\|WP_061938844.1\|1565425_1566637_+\|NYN-domain-containing-protein	gnl\|CDD\|350237	cd11297, PIN_LabA-like_N_1, uncharacterized subfamily of N-terminal LabA-like PIN domains. This N-terminal LabA-like PIN domain is found in a well conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. LabA from Synechococcus elongatus PCC 7942, (which does not contain this C-terminal domain), has been shown to play a role in cyanobacterial circadian timing. The LabA-like C-terminal domains characteristic of this subfamily may be related to the LOTUS domain family (which also co-occurs with LabA-like N-terminal domains). The function of the N-terminal domain is unknown. The LabA-like PIN domain family also includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Other members are the LabA-like PIN domains of human ZNF451, uncharacterized Bacillus subtilis YqxD and Escherichia coli YaiI. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like PIN family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.10541e-46
NZ_CP013234.1\|WP_082792664.1\|1554626_1556870_+\|hypothetical-protein	gnl\|CDD\|143478	cd07562, Peptidase_S41_TRI, Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active site tetrad residues are distributed between the C1 and C2 domains, with serine and histidine on C1 and serine and glutamate on C2.	2.85935e-19
NZ_CP013234.1\|WP_061938840.1\|1562926_1564021_+\|sulfate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213263	cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter. Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	1.85991e-165
NZ_CP013234.1\|WP_061938813.1\|1552435_1553758_+\|C4-dicarboxylate-transporter-DctA	gnl\|CDD\|183850	PRK13027, PRK13027, C4-dicarboxylate transporter DctA; Reviewed.	0
NZ_CP013234.1\|WP_014007003.1\|1545818_1546034_+\|TOBE-domain-containing-protein	gnl\|CDD\|226113	COG3585, MopI, Molybdopterin-binding protein [Coenzyme metabolism].	3.71026e-15
NZ_CP013234.1\|WP_061938810.1\|1550990_1552229_-\|allantoate-amidohydrolase	gnl\|CDD\|237248	PRK12890, PRK12890, allantoate amidohydrolase; Reviewed.	0
NZ_CP013234.1\|WP_061938816.1\|1553876_1554572_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	7.4584e-49
NZ_CP013234.1\|WP_061938823.1\|1556985_1557744_-\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	6.3804e-54
NZ_CP013234.1\|WP_061938837.1\|1561072_1561948_+\|sulfate-ABC-transporter-permease-subunit-CysT	gnl\|CDD\|131194	TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions].	3.55418e-143
NZ_CP013234.1\|WP_061938796.1\|1546061_1546973_+\|EAL-domain-containing-protein	gnl\|CDD\|376350	pfam00563, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site.	4.90319e-10
NZ_CP013234.1\|WP_061945936.1\|1566697_1567741_-\|quinone-dependent-dihydroorotate-dehydrogenase	gnl\|CDD\|235388	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase.	0

>NZ_CP013234.1|WP_061938823.1|1556985_1557744_-|response-regulator-transcription-factor
MPTAIIADDERLMRDQIRLRLSQAWPELEILGEAKNGDEAIELVDQLEPDFTFLDIRMPGKTGLQAAQEIGGKSHIVFITAYDEYAIEAFEHGAVDYILKPAEAERLALTVTRLKARLSTSAAPTDMSSMLTQLAKQMGIATKPVYLQWIQASIGQQLRLIPVQEILFFRSDEKYTSVQTATYEALIRKPVRDLAEELDPDLFWQIHRATLVNVNAIDGITRDMRGRHQVLVKGHTEKLEVSRSFIHLFKQM
>NZ_CP013234.1|WP_082792664.1|1554626_1556870_+|hypothetical-protein
MRRGFAIFCFLMTAGQAQAVDSSAIQRMTDVAHLWSDVKWLSPALASGEIDWDQALVDALPKVEAASTPAAFQDAVTALMKPLHDPAFQIFTIDEPNYVSEESSQEMVEWLPGDVALLHLHRLSSMRVTTGELHFEAVTAQLAARAKGLIIDLRPTRESASYGYGAEFPDELIANFIDQPLLLPSNRYRYHTGFQPEIGITSGMYFSASLMLQTSRLMPVKGGHAIPMVFIVNQSNRVPLSALALQRAGKAWILAEGQASAAWAVPVRAITLDDDGKTGMNYSVGELIFPDGASGFGVDASVAPDSASGAGSPAAKAALKLIRSGVRPGSATVYAKTAAMPVRQLVSLSSELRFPSLPWRQLAVIKLWSTMDKFFPYLAYADRPWDDALPEFLARMKTVSNSRGYAQALAEMAAKLDDSHVWIQGPERASLYGEAPAGVRLASVENRIAIVEITDQELQKNAQVKVGDVVLAVDGEDISQRISELKKITSGSTEAARLRDVLPNLLAGANGSVAKVLIEDAGGVRHEVMLPRSDAFWKFWKARRSGAIFKILPGNIGYADLDRLALKDVDAMFDAFKQTDGLILDMRGYPNGTLWRIAARLNVKGAQFGANFSRRIATALPSEQGSLNTFRQSVPKSDKPLYKGKVVMLIDQSTQSQAEHSGLFFEAATAITFIGSPSAGADGDLTKLVLPGAISVSFSGQEVRHADGRQLQRVGLQPDIKVVPTLDGIRTGRDEVLERAQAFLQAR
>NZ_CP013234.1|WP_061938816.1|1553876_1554572_+|GntR-family-transcriptional-regulator
MSLSSSPPGADSSDDIAADITTAIAEQRLPPGTKLREEALARLYSVSRTKIRAALVMLAKDKLIDLVPDKGAFVSRPTEEEARQIFFVRRVLEAALVREFVAKATAADYATLEQHLQQEREALSKENPQIRSRLLSDFHILLARAVGNQVLTDVLTKLAGRSSLITMLYQSTRDAACSSDEHVEFLQAAKSGDADKAVELMLHHLHHVEKALQFEIPPSDGKKDFVKALLA
>NZ_CP013234.1|WP_061938813.1|1552435_1553758_+|C4-dicarboxylate-transporter-DctA
MRRFYKSLFGQVLIALVIGIAVGVLFPKFGESLKPLGDGFIKLVKMIIPMIVFCVVVHGIYGAGELKKVGRVGLKALIYFEVVTTVALVLGLLLAFVFHPGTGMNINPDTLDANALSSYVETAKQVKGTGFADFVMKIIPSTVVSAFTSGDVLQVLLFSIIFGSALSLIGEKAAPIVIIVHSMSEAFFKCMSFIIRLAPLGVFGAIAFTVGKYGVGSLQQLGFLVLLYFFAVVIFVFAILGTILRLAGFSIFKLIKYLRAELLVVLATASSDSVLPQIMRKLEYMGIKGSTVGLVIPTGYSFNLDAFSIYLTLAAVFIAQATNTPLSITDLLAILAVALITSKGAHGVPGSAIVILAATLSAIPAIPVVGLVLVLSIDWFMGIARALGNLLGNCVATVVVAVWEKDIDRARAHAVLNGARPPLEDELPAPLQAVGDSRPA
>NZ_CP013234.1|WP_061938810.1|1550990_1552229_-|allantoate-amidohydrolase
MQEPWNSCGAQIMTWADALAQHSEAPGMLTRTYLTAAHHAAAAQLAEWMCAAGMSVRRDMAGNVIGRYEGLTTDAPALVTGSHFDSVRNGGKYDGNLGILLPIACIGQWHAAGKRFPFALEVIGFAEEEGVRFKATLLGSRAAAGTFDLSVLDNLDDSGQSMRDVMAASGFHASGLGKAAYAPAAVLAFVEVHIEQGPVLLNNDLPLGVVTAISGASRFMVEIEGLAGHAGTVPMEMRRDAAMAAAEIGLYIEQRCSGTRGLVGTVGQFNVPNGAANVVPGKAVFSIDIRAEQDALRQAAVADVLQQIEQVAARRHVVIQTRKTHEAASVPCAPWLQQQLAGAMEECALPLRHLPSGAGHDAMAMAAITDVAMLFVRCGNGGISHHPDEIMSAADAALGARVFSRFVENFKN
>NZ_CP013234.1|WP_061938807.1|1549332_1550973_-|aromatic-amino-acid-lyase
MTTTTITIDGFNLTAQQVVDVARAPHLPVTLADSSRAALKESRDYIESTWMHDEAPMMYSFNTGVGLLKDTRIKVEHIELFQTQLIKAHCAGLGEPFSEEVSRATMLLRANAFASNYSAPRVEVVDRLLAFLNAGIHPIMPQKGSVGASGDLAPLSYLAAAIAGFDEAEVMYQGQRMSAPEAITKSGVGAVKFDLKAKDASALINGCTASLAVAVLVTHDARNLLSDACLSLGLTLEAMRAEMAAFDHRIQQARPHAGQIKTAAIIRKLLSGSTRTTHEARSVQFPEETRRTDIPYSSRIQDVYSLRCSPQVYGPVFDALDYIDNIVDKEINSATDNPLIFSKEEAEGGGFEIISGGNFHGQYLAQAMDLLAIAIADLGSICERRIARLIDPTLSWGLPRNLMSGVRGVNTGYPVVQCSMSSLVMENRTLCMPGSVDSIPAKGNSEDHVSNSTWCARKAATVVANTQYIIGVEMLLAAQALTMTEDLLPGFVLGQGTQAAYQEIRRQIPACLEGDRWFHNDIVVAQSFVVSGSVRNAVVKQIGEFA
>NZ_CP013234.1|WP_061938804.1|1547814_1548825_+|IS110-family-transposase
METVCAVVGIDVSKKKLDIALLVNGKTKAKVVENSADGYKSLLEWLSKAKVAKETLHVCMEATGIYYEPVALALHDAGVSVSVVNPACIKGFGHSENIRNKNDTADAGLIARYCAAMKPAPWTPPPLEQRQLRAWSLRVQALKDIRQQEENRLEANTFTGMTDVADHVKQHIAWLSAEINKLEDDIDDHIDRHPGLKHDAELITSIPGIGTTTVARILGQLGDIRRFDSAKAFAAFLGVTPKQRSSGTSIKGRTMISRAGSMSMRAALYMPSLVACRHNPLLRCFAERLLATGMAKKAVIGAVMHKMTHLIYGVIRTGKPFDPNYLTNGLAIQDGI
>NZ_CP013234.1|WP_061938801.1|1546975_1547551_+|alpha/beta-hydrolase
MATLSSFRVLVVPGLYNSSPQHWQSRWQRLYPHFERVEQEHWDAPVLEVWSQRLQQQLRGSDQPTLAVAHSFGCLTTIHSALHDVPNLAGALLVAPADPDKFDVSAEVKGRLPVPAIVVGSLNDPWMESGRARQWAKTWGADYIDAGALGHINAESNLGDWLYGQSLLQRLVALSGESQQQAHKALPIATR
>NZ_CP013234.1|WP_061938796.1|1546061_1546973_+|EAL-domain-containing-protein
MTFPALEQYLARLHSVNHGGAHAEVRSDCRVWLDADGRAQGRYFNTTLTSVFQPVRLIDALAGNGAVIGYEGFAHSYSSSDNGLYLWKLLDHAASDDESIELDRLCRMLHSINFYRQAEAAVGDLYLSVHARLLAAVDSNHGMAFRRILNLLELPHEKIVLQLPTITENQGWLLNYVLDNYRRNHFRLAVNADDVAQAAALLEKVRPDVIKIDARGVTHDEHTARFLEQCAARGIQVIFKRLEKARDLEVLQQLARIVTLPLHAQGFLWDLPQAALHAFTASAGTPPAQPDGLPATSVDLGGA
>NZ_CP013234.1|WP_014007003.1|1545818_1546034_+|TOBE-domain-containing-protein
MTIQAINVRNQFKGKIKAIIEGTVVSEVDVETPAGIVTSVITTRSVKDLGLVIGTEVVALVKATEVSIAKI
>NZ_CP013234.1|WP_061938829.1|1558491_1559910_-|histidine-kinase
MTPESLDSLKKNTSTATAYLSQSFDKIASWVTQLSWWKFFLFAILVMIGASILQETLFSSNDDVVIIDRVSRHDRKPPSKPSKAGPGNADIRIDGSGVHIKAYTYDDSSDAASTPASSPASPGPMDEDSDNEAAGKTASAASDAKQEHKEPPAPPAAPAAPTAPNAASLDLKLPPDAAQDVNQAINDAVAAIHEAAAEKAEQQVARYQKKSSEWFVNFVLLLLIGLFGTKALMGGKKRAEARAQAANAAAEHANLQREVSEAKMQMIQAQVEPHFLFNTLASVDYLIETDPPRASAMQKRLIQYLRAVLPQMRETATVTTLGREVDIVRAYLDLLKMRMEERLTVDIQVSDGLRSAAFPPMMLQSLAENAIKHGLESKTDGGTLRIKAEVADNKLRVSVTDDGLGFGAVASNGTGLGLQSIRDRLKLLHGNAAQLEIAPNTPSGVCSTIEVPYQVVGNGKKAPAQDSNSPQK
>NZ_CP013234.1|WP_150119641.1|1560007_1560283_-|hypothetical-protein
MNTSSKLLVAVTLLATLSVSAVPAMAAACAAKQTVAKADDIPLLMPPIVIVGKRLTPEEKAMYAAQDRALNMKKIARKKNASTATAALSAL
>NZ_CP013234.1|WP_061938835.1|1560352_1560676_-|hypothetical-protein
MNTANKTLIAALSIATLAFGVSSAQAAPQQAEVSTLPTITIIGKRPVHSDLLATVTIVGKRLTAQEKLALAQQDDSLPTITIIGKRLSRDQKAVLAQGESNHKKAVI
>NZ_CP013234.1|WP_061938837.1|1561072_1561948_+|sulfate-ABC-transporter-permease-subunit-CysT
MTAAAFPVNSLASKPAAPFRVMPGFRLSLGFTLFYLALIVLIPLSAVFLKTFTLSWDGFISAVTSPRVMASYRLTFGASLLAALLNAFFGGIVAWVLVRYEFPGKKLIDALVDLPFALPTAVAGIALTALYSSNGWIGQYLEPLGIKVAFTPLGVLVALTFIGLPFVVRTVQPVLEDAEKELEEAAASLGANHWQTFTRVIFPTVFPALLTGFALSFARATGEYGSVIFIAGNMPMVSEITPLFIITKLEQYDYAGATAIAVVMLTASFLLLLAINVLQAWTRKRGQSTGA
>NZ_CP013234.1|WP_167595226.1|1562033_1562930_+|sulfate-ABC-transporter-permease-subunit-CysW
MHVPNATLEPLWVRALLMTVALLFLTLFLVVPLLSVFAEAFKKGWEAYLAAIIEPDAVSAIKLTLLTAAIAVPLNLVFGIAASWTIAKFEFRGKNILLTLIDLPFSVSPVISGLIYVLLFGAQGWFGPWLREHDIKILFAVPGIVLATVFVTFPFVARELIPLMQAQGSEEEEAALVLGASGWKTFRHVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGETNTIPLQVEILYNEYNFQAAFAVASLLAFLALLTLALKSFIEWRLRETVPLRHQPLSQPLHQPAQPSGQEQA
>NZ_CP013234.1|WP_061938840.1|1562926_1564021_+|sulfate-ABC-transporter-ATP-binding-protein
MSIQVSNINKRFGEFVALNNVSLEFPTGELTALLGPSGCGKTTLLRIIAGLEGQDSGQVLLEGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRAQRPSESVIREKVTRLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGNVEQTGAPQQVYDNPASPFVYGFLGNVNLFHGRVHQGVLDSGGMRFAAPDHAEADDVQGIGYVRPHDLEIDRYSAGGEGIVVQLKRAHAIGPLAQLELQRSDSSANDNGDAGLIEAVISSERFQQLNLKDGETLLVRPRRLQVFVDQPSIR
>NZ_CP013234.1|WP_061938842.1|1564031_1565021_+|CysB-family-HTH-type-transcriptional-regulator
MNFQQLRSIREAARCGFNLTEVANVLFTSQPGVSRQIRELEEELCVDIFIRNGKRLIGLTDPGKGILKIVERLLQEAENLRQASQEYSGETSGTLTIAATHTQARYALPRVVQGFRASFPDVRIALQQSSPEHIADWVISGKADVGIATEGLTQFKELISFPCYEWSHVLVVPEGHQLLAVDGPISLADLAAYPLITYDIGFTGRGHIDDAFRTAGITPDIVLTAMDSDVIQQYVALGLGIGLVASMATEHSSQNGLRTIDVSHLLASNVTRLAVRRGAYLRSYTFDFILQFAPQLKREDIIEALHAEPHSAGSSVHKVDFEERILKIA
>NZ_CP013234.1|WP_061938844.1|1565425_1566637_+|NYN-domain-containing-protein
MASSPENLSMAVFCDFENVALGVRDAKYEKFDIKPVLERLLLKGSIVVKKAYCDWERYKEFKATMHEANFELIEIPHVRQSGKNSADIRLVVDALDLCYMKSHVNTFVIISGDSDFSPLVSKLRENAKQVIGVGVKQSTSDLLVANCDEFIFYDDLVRESRRTAAKRGTRETQPAAKRSPDEEKRRKAELEARRNQAIEMAVETFEALVSERGDSGKIWASVLKEAIKRRKPDFSESYYGFRAFGNLLEEAQARGLLEFGRDEKSGTYVYRSSGGNGSTGNHGGTIAAEAVVEQPVETPQPKVAEATMVSATEAAVVEAEDNGDKPEPRRKGRGGRKPAAKKTAEAAPQVAAQEVNLAPETPAVIEAPPQPPEEAPVKAVKAPRKPAARSRRPRKTEAKSDEA
>NZ_CP013234.1|WP_061945936.1|1566697_1567741_-|quinone-dependent-dihydroorotate-dehydrogenase
MPAKLLYAFARPALFSLDPEAAHNLTLPALRRAAALGLTSLLGKPAADPRTVMGVTFPNPVGLAAGLDKDGAYIDGLAALGFGSIEIGTVTPRAQPGNPKPRMFRLPAANAIINRMGFNNGGVDAFVANVQASRFYQERQGVLGLNIGKNADTPIERAAEDYLHCLAKVYPYASYVTVNISSPNTKNLRQLQGASELDALLSRLKETQQRLADLHKRYVPLALKIAPDIDAEQIKTIADALLRHKIDGVIATNTTISREAVRGLQHENEAGGLSGAPVLALSTSVVRQLHGELGDALPIIGVGGIFSGADAQAKIAAGAALVQLYSGLIYRGPALVRECAAALRQKS
>NZ_CP013234.1|WP_061938847.1|1567845_1568571_-|arginyltransferase
MTHLKDLPFSTLQFYATAPYPCSYLEHRQARSQVATPSHLINADVYSELVKNGFRRSGIFTYRPYCDGCQACTPVRTLVASFQPNRSQRRAWERHCHLTTLVTNLAYVNEHYDLYLRYQTARHSGGGMDQDSRDQYAQFLLQSKVNTRLVEFREADGTLRMVSIIDVLNDGLSSVYTFYDPDVPGASYGTYNVLWQIGQAKQLGMPYVYLGYWIEESPKMAYKVNFQPLEALQQGQWSALE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP013234_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013234_3

1560420-1560571

Orphan

Consensus_repeat	Method
GGCGCTTGCCGATGATGGTGATGGTTGGCAG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP013234_3

>merge|NZ_CP013234|3|1560420-1560571|PILER-CR
CGCTTGCCGATGATGGTGATGGTCGGCAGGCTGTCATCCTGCTGTGCCAGGGCCAGCTTTTCTTGCGCTGTCAGGCGCTTGCCGACGATGGTCACGGTTGCCAGCAGGTCGCTGTGGACTGGGCGCTTGCCGATGATGGTGATGGTTGGCAG

>NZ_CP013234|3|2|1560420-1560571|PILER-CR
CGCTTGCCGATGATGGTGATGGTCGGCAGGC	TGTCATCCTGCTGTGCCAGGGCCAGCTTTTCTTGCGCTGTCAGG
CGCTTGCCGACGATGGTCACGGTTGCCAGCA	GGTCGCTGTGGACTGGG
CGCTTGCCGATGATGGTGATGGTTGGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013234.1\|WP_061938826.1\|1557761_1558478_-\|DUF2807-domain-containing-protein	unknown	unknown	gnl\|CDD\|371327
NZ_CP013234.1\|WP_167595226.1\|1562033_1562930_+\|sulfate-ABC-transporter-permease-subunit-CysW	unknown	unknown	gnl\|CDD\|226665
NZ_CP013234.1\|WP_061938829.1\|1558491_1559910_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP013234.1\|WP_061938854.1\|1570691_1571261_-\|DUF4272-domain-containing-protein	unknown	unknown	gnl\|CDD\|379466
NZ_CP013234.1\|WP_061938847.1\|1567845_1568571_-\|arginyltransferase	unknown	unknown	gnl\|CDD\|234939
NZ_CP013234.1\|WP_061938804.1\|1547814_1548825_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|226077
NZ_CP013234.1\|WP_061938810.1\|1550990_1552229_-\|allantoate-amidohydrolase	unknown	unknown	gnl\|CDD\|237248
NZ_CP013234.1\|WP_061938844.1\|1565425_1566637_+\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350237
NZ_CP013234.1\|WP_061938842.1\|1564031_1565021_+\|CysB-family-HTH-type-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237173
NZ_CP013234.1\|WP_082792664.1\|1554626_1556870_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|143478
NZ_CP013234.1\|WP_061938813.1\|1552435_1553758_+\|C4-dicarboxylate-transporter-DctA	unknown	unknown	gnl\|CDD\|183850
NZ_CP013234.1\|WP_061938840.1\|1562926_1564021_+\|sulfate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213263
NZ_CP013234.1\|WP_061938807.1\|1549332_1550973_-\|aromatic-amino-acid-lyase	unknown	unknown	gnl\|CDD\|376303
NZ_CP013234.1\|WP_150119641.1\|1560007_1560283_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013234.1\|WP_061938823.1\|1556985_1557744_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP013234.1\|WP_061938837.1\|1561072_1561948_+\|sulfate-ABC-transporter-permease-subunit-CysT	unknown	unknown	gnl\|CDD\|131194
NZ_CP013234.1\|WP_061938816.1\|1553876_1554572_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP013234.1\|WP_061938852.1\|1569498_1570083_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239948
NZ_CP013234.1\|WP_061938850.1\|1568736_1569480_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP013234.1\|WP_061945936.1\|1566697_1567741_-\|quinone-dependent-dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235388

Protein	Function_ID	Function_description	E-value
NZ_CP013234.1\|WP_061938826.1\|1557761_1558478_-\|DUF2807-domain-containing-protein	gnl\|CDD\|371327	pfam10988, DUF2807, Putative auto-transporter adhesin, head GIN domain. This bacterial family of proteins shows structural similarity to other pectin lyase families. Although structures from this family align with acetyl-transferases, there is no conservation of catalytic residues found. It is likely that the function is one of cell-adhesion. In Structure 3jx8, it is interesting to note that the sequence of contains several well defined sequence repeats, centred around GSG motifs defining the tight beta turn between the two sheets of the super-helix; there are 8 such repeats in the C-terminal half of the protein, which could be grouped into 4 repeats of two. It seems likely that this family belongs to the superfamily of trimeric auto-transporter adhesins (TAAs), which are important virulence factors in Gram-negative pathogens. In the case of Parabacteroides distasonis, which is a component of the normal distal human gut microbiota, TAA-like complexes probably modulate adherence to the host (information derived from TOPSAN).	5.4524e-40
NZ_CP013234.1\|WP_167595226.1\|1562033_1562930_+\|sulfate-ABC-transporter-permease-subunit-CysW	gnl\|CDD\|226665	COG4208, CysW, ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism].	4.02778e-158
NZ_CP013234.1\|WP_061938829.1\|1558491_1559910_-\|histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	9.26993e-42
NZ_CP013234.1\|WP_061938854.1\|1570691_1571261_-\|DUF4272-domain-containing-protein	gnl\|CDD\|379466	pfam14094, DUF4272, Domain of unknown function (DUF4272). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 221 and 399 amino acids in length.	2.25481e-34
NZ_CP013234.1\|WP_061938847.1\|1567845_1568571_-\|arginyltransferase	gnl\|CDD\|234939	PRK01305, PRK01305, arginyl-tRNA-protein transferase; Provisional.	3.23219e-143
NZ_CP013234.1\|WP_061938804.1\|1547814_1548825_+\|IS110-family-transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.69755e-28
NZ_CP013234.1\|WP_061938810.1\|1550990_1552229_-\|allantoate-amidohydrolase	gnl\|CDD\|237248	PRK12890, PRK12890, allantoate amidohydrolase; Reviewed.	0
NZ_CP013234.1\|WP_061938844.1\|1565425_1566637_+\|NYN-domain-containing-protein	gnl\|CDD\|350237	cd11297, PIN_LabA-like_N_1, uncharacterized subfamily of N-terminal LabA-like PIN domains. This N-terminal LabA-like PIN domain is found in a well conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. LabA from Synechococcus elongatus PCC 7942, (which does not contain this C-terminal domain), has been shown to play a role in cyanobacterial circadian timing. The LabA-like C-terminal domains characteristic of this subfamily may be related to the LOTUS domain family (which also co-occurs with LabA-like N-terminal domains). The function of the N-terminal domain is unknown. The LabA-like PIN domain family also includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Other members are the LabA-like PIN domains of human ZNF451, uncharacterized Bacillus subtilis YqxD and Escherichia coli YaiI. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like PIN family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.10541e-46
NZ_CP013234.1\|WP_061938842.1\|1564031_1565021_+\|CysB-family-HTH-type-transcriptional-regulator	gnl\|CDD\|237173	PRK12684, PRK12684, CysB family HTH-type transcriptional regulator.	1.49926e-167
NZ_CP013234.1\|WP_082792664.1\|1554626_1556870_+\|hypothetical-protein	gnl\|CDD\|143478	cd07562, Peptidase_S41_TRI, Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active site tetrad residues are distributed between the C1 and C2 domains, with serine and histidine on C1 and serine and glutamate on C2.	2.85935e-19
NZ_CP013234.1\|WP_061938813.1\|1552435_1553758_+\|C4-dicarboxylate-transporter-DctA	gnl\|CDD\|183850	PRK13027, PRK13027, C4-dicarboxylate transporter DctA; Reviewed.	0
NZ_CP013234.1\|WP_061938840.1\|1562926_1564021_+\|sulfate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213263	cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter. Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	1.85991e-165
NZ_CP013234.1\|WP_061938807.1\|1549332_1550973_-\|aromatic-amino-acid-lyase	gnl\|CDD\|376303	pfam00221, Lyase_aromatic, Aromatic amino acid lyase. This family includes proteins with phenylalanine ammonia-lyase, EC:4.3.1.24, histidine ammonia-lyase, EC:4.3.1.3, and tyrosine aminomutase, EC:5.4.3.6, activities.	0
NZ_CP013234.1\|WP_061938816.1\|1553876_1554572_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	7.4584e-49
NZ_CP013234.1\|WP_061938823.1\|1556985_1557744_-\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	6.3804e-54
NZ_CP013234.1\|WP_061938837.1\|1561072_1561948_+\|sulfate-ABC-transporter-permease-subunit-CysT	gnl\|CDD\|131194	TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions].	3.55418e-143
NZ_CP013234.1\|WP_061938852.1\|1569498_1570083_-\|NUDIX-hydrolase	gnl\|CDD\|239948	cd04511, Nudix_Hydrolase_4, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	9.67367e-79
NZ_CP013234.1\|WP_061938850.1\|1568736_1569480_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.1747e-131
NZ_CP013234.1\|WP_061945936.1\|1566697_1567741_-\|quinone-dependent-dihydroorotate-dehydrogenase	gnl\|CDD\|235388	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase.	0

>NZ_CP013234.1|WP_150119641.1|1560007_1560283_-|hypothetical-protein
MNTSSKLLVAVTLLATLSVSAVPAMAAACAAKQTVAKADDIPLLMPPIVIVGKRLTPEEKAMYAAQDRALNMKKIARKKNASTATAALSAL
>NZ_CP013234.1|WP_061938829.1|1558491_1559910_-|histidine-kinase
MTPESLDSLKKNTSTATAYLSQSFDKIASWVTQLSWWKFFLFAILVMIGASILQETLFSSNDDVVIIDRVSRHDRKPPSKPSKAGPGNADIRIDGSGVHIKAYTYDDSSDAASTPASSPASPGPMDEDSDNEAAGKTASAASDAKQEHKEPPAPPAAPAAPTAPNAASLDLKLPPDAAQDVNQAINDAVAAIHEAAAEKAEQQVARYQKKSSEWFVNFVLLLLIGLFGTKALMGGKKRAEARAQAANAAAEHANLQREVSEAKMQMIQAQVEPHFLFNTLASVDYLIETDPPRASAMQKRLIQYLRAVLPQMRETATVTTLGREVDIVRAYLDLLKMRMEERLTVDIQVSDGLRSAAFPPMMLQSLAENAIKHGLESKTDGGTLRIKAEVADNKLRVSVTDDGLGFGAVASNGTGLGLQSIRDRLKLLHGNAAQLEIAPNTPSGVCSTIEVPYQVVGNGKKAPAQDSNSPQK
>NZ_CP013234.1|WP_061938826.1|1557761_1558478_-|DUF2807-domain-containing-protein
MKSPSRFAFFFALATAAMIPLLSCSPSVAADVNKTERQVDSFQQVEIMDAVNVYLTQGPAKPAVIEAEGNGASQVRLDVSGSVLRVISGGSRMFHNTNVNVYLTAPDVNGLSIFGSGDLKVLGKLSAKDTIKISIAGSGTVSGELNAPNVNASIAGAGDIKVKGRTRDLRVSIAGSGDYDGFDLMAESTHVSIVGSGDAHVYASKQLSVSTAGSGDVSYMGDPQVRSSIMGSGSVKKR
>NZ_CP013234.1|WP_061938823.1|1556985_1557744_-|response-regulator-transcription-factor
MPTAIIADDERLMRDQIRLRLSQAWPELEILGEAKNGDEAIELVDQLEPDFTFLDIRMPGKTGLQAAQEIGGKSHIVFITAYDEYAIEAFEHGAVDYILKPAEAERLALTVTRLKARLSTSAAPTDMSSMLTQLAKQMGIATKPVYLQWIQASIGQQLRLIPVQEILFFRSDEKYTSVQTATYEALIRKPVRDLAEELDPDLFWQIHRATLVNVNAIDGITRDMRGRHQVLVKGHTEKLEVSRSFIHLFKQM
>NZ_CP013234.1|WP_082792664.1|1554626_1556870_+|hypothetical-protein
MRRGFAIFCFLMTAGQAQAVDSSAIQRMTDVAHLWSDVKWLSPALASGEIDWDQALVDALPKVEAASTPAAFQDAVTALMKPLHDPAFQIFTIDEPNYVSEESSQEMVEWLPGDVALLHLHRLSSMRVTTGELHFEAVTAQLAARAKGLIIDLRPTRESASYGYGAEFPDELIANFIDQPLLLPSNRYRYHTGFQPEIGITSGMYFSASLMLQTSRLMPVKGGHAIPMVFIVNQSNRVPLSALALQRAGKAWILAEGQASAAWAVPVRAITLDDDGKTGMNYSVGELIFPDGASGFGVDASVAPDSASGAGSPAAKAALKLIRSGVRPGSATVYAKTAAMPVRQLVSLSSELRFPSLPWRQLAVIKLWSTMDKFFPYLAYADRPWDDALPEFLARMKTVSNSRGYAQALAEMAAKLDDSHVWIQGPERASLYGEAPAGVRLASVENRIAIVEITDQELQKNAQVKVGDVVLAVDGEDISQRISELKKITSGSTEAARLRDVLPNLLAGANGSVAKVLIEDAGGVRHEVMLPRSDAFWKFWKARRSGAIFKILPGNIGYADLDRLALKDVDAMFDAFKQTDGLILDMRGYPNGTLWRIAARLNVKGAQFGANFSRRIATALPSEQGSLNTFRQSVPKSDKPLYKGKVVMLIDQSTQSQAEHSGLFFEAATAITFIGSPSAGADGDLTKLVLPGAISVSFSGQEVRHADGRQLQRVGLQPDIKVVPTLDGIRTGRDEVLERAQAFLQAR
>NZ_CP013234.1|WP_061938816.1|1553876_1554572_+|GntR-family-transcriptional-regulator
MSLSSSPPGADSSDDIAADITTAIAEQRLPPGTKLREEALARLYSVSRTKIRAALVMLAKDKLIDLVPDKGAFVSRPTEEEARQIFFVRRVLEAALVREFVAKATAADYATLEQHLQQEREALSKENPQIRSRLLSDFHILLARAVGNQVLTDVLTKLAGRSSLITMLYQSTRDAACSSDEHVEFLQAAKSGDADKAVELMLHHLHHVEKALQFEIPPSDGKKDFVKALLA
>NZ_CP013234.1|WP_061938813.1|1552435_1553758_+|C4-dicarboxylate-transporter-DctA
MRRFYKSLFGQVLIALVIGIAVGVLFPKFGESLKPLGDGFIKLVKMIIPMIVFCVVVHGIYGAGELKKVGRVGLKALIYFEVVTTVALVLGLLLAFVFHPGTGMNINPDTLDANALSSYVETAKQVKGTGFADFVMKIIPSTVVSAFTSGDVLQVLLFSIIFGSALSLIGEKAAPIVIIVHSMSEAFFKCMSFIIRLAPLGVFGAIAFTVGKYGVGSLQQLGFLVLLYFFAVVIFVFAILGTILRLAGFSIFKLIKYLRAELLVVLATASSDSVLPQIMRKLEYMGIKGSTVGLVIPTGYSFNLDAFSIYLTLAAVFIAQATNTPLSITDLLAILAVALITSKGAHGVPGSAIVILAATLSAIPAIPVVGLVLVLSIDWFMGIARALGNLLGNCVATVVVAVWEKDIDRARAHAVLNGARPPLEDELPAPLQAVGDSRPA
>NZ_CP013234.1|WP_061938810.1|1550990_1552229_-|allantoate-amidohydrolase
MQEPWNSCGAQIMTWADALAQHSEAPGMLTRTYLTAAHHAAAAQLAEWMCAAGMSVRRDMAGNVIGRYEGLTTDAPALVTGSHFDSVRNGGKYDGNLGILLPIACIGQWHAAGKRFPFALEVIGFAEEEGVRFKATLLGSRAAAGTFDLSVLDNLDDSGQSMRDVMAASGFHASGLGKAAYAPAAVLAFVEVHIEQGPVLLNNDLPLGVVTAISGASRFMVEIEGLAGHAGTVPMEMRRDAAMAAAEIGLYIEQRCSGTRGLVGTVGQFNVPNGAANVVPGKAVFSIDIRAEQDALRQAAVADVLQQIEQVAARRHVVIQTRKTHEAASVPCAPWLQQQLAGAMEECALPLRHLPSGAGHDAMAMAAITDVAMLFVRCGNGGISHHPDEIMSAADAALGARVFSRFVENFKN
>NZ_CP013234.1|WP_061938807.1|1549332_1550973_-|aromatic-amino-acid-lyase
MTTTTITIDGFNLTAQQVVDVARAPHLPVTLADSSRAALKESRDYIESTWMHDEAPMMYSFNTGVGLLKDTRIKVEHIELFQTQLIKAHCAGLGEPFSEEVSRATMLLRANAFASNYSAPRVEVVDRLLAFLNAGIHPIMPQKGSVGASGDLAPLSYLAAAIAGFDEAEVMYQGQRMSAPEAITKSGVGAVKFDLKAKDASALINGCTASLAVAVLVTHDARNLLSDACLSLGLTLEAMRAEMAAFDHRIQQARPHAGQIKTAAIIRKLLSGSTRTTHEARSVQFPEETRRTDIPYSSRIQDVYSLRCSPQVYGPVFDALDYIDNIVDKEINSATDNPLIFSKEEAEGGGFEIISGGNFHGQYLAQAMDLLAIAIADLGSICERRIARLIDPTLSWGLPRNLMSGVRGVNTGYPVVQCSMSSLVMENRTLCMPGSVDSIPAKGNSEDHVSNSTWCARKAATVVANTQYIIGVEMLLAAQALTMTEDLLPGFVLGQGTQAAYQEIRRQIPACLEGDRWFHNDIVVAQSFVVSGSVRNAVVKQIGEFA
>NZ_CP013234.1|WP_061938804.1|1547814_1548825_+|IS110-family-transposase
METVCAVVGIDVSKKKLDIALLVNGKTKAKVVENSADGYKSLLEWLSKAKVAKETLHVCMEATGIYYEPVALALHDAGVSVSVVNPACIKGFGHSENIRNKNDTADAGLIARYCAAMKPAPWTPPPLEQRQLRAWSLRVQALKDIRQQEENRLEANTFTGMTDVADHVKQHIAWLSAEINKLEDDIDDHIDRHPGLKHDAELITSIPGIGTTTVARILGQLGDIRRFDSAKAFAAFLGVTPKQRSSGTSIKGRTMISRAGSMSMRAALYMPSLVACRHNPLLRCFAERLLATGMAKKAVIGAVMHKMTHLIYGVIRTGKPFDPNYLTNGLAIQDGI
>NZ_CP013234.1|WP_061938837.1|1561072_1561948_+|sulfate-ABC-transporter-permease-subunit-CysT
MTAAAFPVNSLASKPAAPFRVMPGFRLSLGFTLFYLALIVLIPLSAVFLKTFTLSWDGFISAVTSPRVMASYRLTFGASLLAALLNAFFGGIVAWVLVRYEFPGKKLIDALVDLPFALPTAVAGIALTALYSSNGWIGQYLEPLGIKVAFTPLGVLVALTFIGLPFVVRTVQPVLEDAEKELEEAAASLGANHWQTFTRVIFPTVFPALLTGFALSFARATGEYGSVIFIAGNMPMVSEITPLFIITKLEQYDYAGATAIAVVMLTASFLLLLAINVLQAWTRKRGQSTGA
>NZ_CP013234.1|WP_167595226.1|1562033_1562930_+|sulfate-ABC-transporter-permease-subunit-CysW
MHVPNATLEPLWVRALLMTVALLFLTLFLVVPLLSVFAEAFKKGWEAYLAAIIEPDAVSAIKLTLLTAAIAVPLNLVFGIAASWTIAKFEFRGKNILLTLIDLPFSVSPVISGLIYVLLFGAQGWFGPWLREHDIKILFAVPGIVLATVFVTFPFVARELIPLMQAQGSEEEEAALVLGASGWKTFRHVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGETNTIPLQVEILYNEYNFQAAFAVASLLAFLALLTLALKSFIEWRLRETVPLRHQPLSQPLHQPAQPSGQEQA
>NZ_CP013234.1|WP_061938840.1|1562926_1564021_+|sulfate-ABC-transporter-ATP-binding-protein
MSIQVSNINKRFGEFVALNNVSLEFPTGELTALLGPSGCGKTTLLRIIAGLEGQDSGQVLLEGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRAQRPSESVIREKVTRLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGNVEQTGAPQQVYDNPASPFVYGFLGNVNLFHGRVHQGVLDSGGMRFAAPDHAEADDVQGIGYVRPHDLEIDRYSAGGEGIVVQLKRAHAIGPLAQLELQRSDSSANDNGDAGLIEAVISSERFQQLNLKDGETLLVRPRRLQVFVDQPSIR
>NZ_CP013234.1|WP_061938842.1|1564031_1565021_+|CysB-family-HTH-type-transcriptional-regulator
MNFQQLRSIREAARCGFNLTEVANVLFTSQPGVSRQIRELEEELCVDIFIRNGKRLIGLTDPGKGILKIVERLLQEAENLRQASQEYSGETSGTLTIAATHTQARYALPRVVQGFRASFPDVRIALQQSSPEHIADWVISGKADVGIATEGLTQFKELISFPCYEWSHVLVVPEGHQLLAVDGPISLADLAAYPLITYDIGFTGRGHIDDAFRTAGITPDIVLTAMDSDVIQQYVALGLGIGLVASMATEHSSQNGLRTIDVSHLLASNVTRLAVRRGAYLRSYTFDFILQFAPQLKREDIIEALHAEPHSAGSSVHKVDFEERILKIA
>NZ_CP013234.1|WP_061938844.1|1565425_1566637_+|NYN-domain-containing-protein
MASSPENLSMAVFCDFENVALGVRDAKYEKFDIKPVLERLLLKGSIVVKKAYCDWERYKEFKATMHEANFELIEIPHVRQSGKNSADIRLVVDALDLCYMKSHVNTFVIISGDSDFSPLVSKLRENAKQVIGVGVKQSTSDLLVANCDEFIFYDDLVRESRRTAAKRGTRETQPAAKRSPDEEKRRKAELEARRNQAIEMAVETFEALVSERGDSGKIWASVLKEAIKRRKPDFSESYYGFRAFGNLLEEAQARGLLEFGRDEKSGTYVYRSSGGNGSTGNHGGTIAAEAVVEQPVETPQPKVAEATMVSATEAAVVEAEDNGDKPEPRRKGRGGRKPAAKKTAEAAPQVAAQEVNLAPETPAVIEAPPQPPEEAPVKAVKAPRKPAARSRRPRKTEAKSDEA
>NZ_CP013234.1|WP_061945936.1|1566697_1567741_-|quinone-dependent-dihydroorotate-dehydrogenase
MPAKLLYAFARPALFSLDPEAAHNLTLPALRRAAALGLTSLLGKPAADPRTVMGVTFPNPVGLAAGLDKDGAYIDGLAALGFGSIEIGTVTPRAQPGNPKPRMFRLPAANAIINRMGFNNGGVDAFVANVQASRFYQERQGVLGLNIGKNADTPIERAAEDYLHCLAKVYPYASYVTVNISSPNTKNLRQLQGASELDALLSRLKETQQRLADLHKRYVPLALKIAPDIDAEQIKTIADALLRHKIDGVIATNTTISREAVRGLQHENEAGGLSGAPVLALSTSVVRQLHGELGDALPIIGVGGIFSGADAQAKIAAGAALVQLYSGLIYRGPALVRECAAALRQKS
>NZ_CP013234.1|WP_061938847.1|1567845_1568571_-|arginyltransferase
MTHLKDLPFSTLQFYATAPYPCSYLEHRQARSQVATPSHLINADVYSELVKNGFRRSGIFTYRPYCDGCQACTPVRTLVASFQPNRSQRRAWERHCHLTTLVTNLAYVNEHYDLYLRYQTARHSGGGMDQDSRDQYAQFLLQSKVNTRLVEFREADGTLRMVSIIDVLNDGLSSVYTFYDPDVPGASYGTYNVLWQIGQAKQLGMPYVYLGYWIEESPKMAYKVNFQPLEALQQGQWSALE
>NZ_CP013234.1|WP_061938850.1|1568736_1569480_-|leucyl/phenylalanyl-tRNA--protein-transferase
MIPWLELDSPFPDVSTALTEEDGAGGLLAAGGDLSPRRLLDAYRHGIFPWFSENQPILWWSTDPRMVLQTDCFAISASLRKTLRKVHRSMHCPDGDRRWQVRFDFAFEQVMRACAAPRRDGAGTWISEDIVAGYRALHKLGYAHSSEVWLDGKLVGGAYGVSIGRMFYGESMFTRVSDASKIALAYLVHFLRRHEVGMIDCQQETGHLASLGALPIPRSEFLLHLQQATRHPQIHHWQPLPLFSDVV
>NZ_CP013234.1|WP_061938852.1|1569498_1570083_-|NUDIX-hydrolase
MKFCSECAHPVSLQIPPDDNRMRYVCSNCGAIHYQNPKMVIGSIPVWERDGELRVLLCKRAIEPQYGFWTLPAGFMENGETTSAAAQRETEEEAGARIQLHELFSLLNVPHVHQVHLFYRATLLDIDYAAGIESLEVALFTEAEIPWEEIAFPTVEITLRAFFSDLKKIRQEDGHFSLHTQDIFKPMRPGLAPK
>NZ_CP013234.1|WP_061938854.1|1570691_1571261_-|DUF4272-domain-containing-protein
MDEIFEEDAQKPRSAKDVAERLLALMAITSRAFEDVAEQSLSWVKENKIDLYFSSEEKSFYFSQIKPRDKDRTNFSWRLEAAIPLIWALGGMETLPPLTESAKISDYEITNLAYDNPQKFLASVELRSNAEIEEAESEHYNQHWRVRDAQLFKKPMPVELDPSIVYERRYALSWLVGYGDDWDNVPTDT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

974373 : 981893

Enterobacteria_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061937436.1\|974373_975414_-	GDP-mannose 4,6-dehydratase	M1HKK4	Acanthocystis_turfacea_Chlorella_virus	4.9e-101	53.9
WP_061937439.1\|977320_978403_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-78	46.1
WP_061937442.1\|978399_979302_+	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	4.4e-98	63.8
WP_061937445.1\|979304_979850_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.2e-51	54.7
WP_150119618.1\|979741_980728_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	3.2e-25	30.6
WP_082792602.1\|980942_981893_+	NAD-dependent epimerase/dehydratase family protein	A0A223FNK3	NY_014_poxvirus	1.2e-08	29.9

DBSCAN-SWA_2

1242391 : 1249958

Phage_21(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061938073.1\|1242391_1243645_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	6.8e-12	63.0
WP_009665919.1\|1243809_1244013_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.4e-23	81.8
WP_061938076.1\|1244340_1244649_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.1e-11	45.7
WP_061938080.1\|1244645_1246946_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.5e-169	41.5
WP_167595131.1\|1247037_1248126_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_061938086.1\|1248137_1248587_-	dUTP diphosphatase	Q2NP83	Xanthomonas_phage	5.5e-49	63.9
WP_061938089.1\|1248752_1249958_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	3.1e-38	32.0

DBSCAN-SWA_3

2500470 : 2507185

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061940275.1\|2500470_2501208_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	5.4e-70	55.4
WP_061940277.1\|2501204_2502098_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.8e-36	47.4
WP_061940279.1\|2502193_2503189_+	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA
WP_061946134.1\|2503257_2504229_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	4.4e-35	33.9
WP_061940281.1\|2504351_2505701_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A1X9I6F4	Streptococcus_phage	1.0e-26	24.9
WP_061940283.1\|2505784_2506480_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.9e-24	37.1
WP_061940285.1\|2506774_2507185_+	nucleoside-diphosphate kinase	A0A167REB2	Powai_lake_megavirus	1.1e-19	42.1

DBSCAN-SWA_4

3047743 : 3099773

Stx2-converting_phage(25.0%)

integrase,transposase

attL 3050926:3050984|attR 3083987:3084045

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_150119692.1\|3047743_3048127_+\|transposase	transposase	NA	NA	NA	NA
WP_061941207.1\|3048123_3048471_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	7.0e-44	75.7
WP_061941209.1\|3048500_3050060_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	5.2e-155	55.1
WP_061941211.1\|3050115_3050673_+	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
3050926:3050984	attL	NA	NA	NA	NA
WP_150119693.1\|3051213_3051633_-	hypothetical protein	NA	NA	NA	NA
WP_061941213.1\|3051766_3052174_-	hypothetical protein	NA	NA	NA	NA
WP_061941215.1\|3052191_3053424_-	beta-ketoacyl-[acyl-carrier-protein] synthase family protein	NA	NA	NA	NA
WP_061941217.1\|3053420_3053822_-	acyl carrier protein	NA	NA	NA	NA
WP_167595169.1\|3053878_3054889_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_061941221.1\|3054942_3057666_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_061941223.1\|3057724_3058468_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_099047200.1\|3058619_3059177_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_082792834.1\|3060419_3061442_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_082792835.1\|3061839_3065364_+	hypothetical protein	NA	NA	NA	NA
WP_061941231.1\|3065411_3066254_+\|transposase	transposase	NA	NA	NA	NA
WP_150119695.1\|3066391_3066751_+	hypothetical protein	NA	NA	NA	NA
WP_061941233.1\|3066984_3067503_-	hypothetical protein	V9IQW8	Stenotrophomonas_phage	6.9e-11	38.8
WP_082793486.1\|3067499_3068069_-	glycoside hydrolase family 19 protein	F1C5D2	Cronobacter_phage	5.9e-40	55.2
WP_150119696.1\|3068152_3068419_-	hypothetical protein	NA	NA	NA	NA
WP_061941238.1\|3068402_3068762_-	hypothetical protein	Q6J1Q7	Burkholderia_virus	1.6e-22	51.8
WP_082793487.1\|3068809_3069040_-	hypothetical protein	NA	NA	NA	NA
WP_061941241.1\|3070547_3070835_-	hypothetical protein	NA	NA	NA	NA
WP_061941243.1\|3071158_3074224_-	autotransporter domain-containing protein	NA	NA	NA	NA
WP_061941244.1\|3074390_3075665_-	thioredoxin	NA	NA	NA	NA
WP_150119697.1\|3075682_3076177_-	hypothetical protein	NA	NA	NA	NA
WP_150119698.1\|3076222_3076477_-	hypothetical protein	NA	NA	NA	NA
WP_150119699.1\|3077078_3077555_+	hypothetical protein	NA	NA	NA	NA
WP_167595119.1\|3077659_3077893_+	hypothetical protein	NA	NA	NA	NA
WP_082792837.1\|3077867_3078086_+\|transposase	transposase	NA	NA	NA	NA
WP_061941248.1\|3078271_3079516_+	MFS transporter	S4TR35	Salmonella_phage	6.3e-18	21.7
WP_061941253.1\|3080097_3080676_+	hypothetical protein	NA	NA	NA	NA
WP_061946224.1\|3080685_3080892_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_061941255.1\|3081286_3082240_-	hypothetical protein	NA	NA	NA	NA
WP_167595170.1\|3082254_3082893_-	hypothetical protein	NA	NA	NA	NA
WP_099047201.1\|3083417_3083864_+\|integrase	tyrosine-type recombinase/integrase	A0A0M3LS39	Mannheimia_phage	2.2e-18	41.8
WP_061941261.1\|3084600_3092946_-	hypothetical protein	NA	NA	NA	NA
3083987:3084045	attR	NA	NA	NA	NA
WP_150119700.1\|3093530_3098030_-	hypothetical protein	NA	NA	NA	NA
WP_150119701.1\|3098059_3098242_-	hypothetical protein	NA	NA	NA	NA
WP_099047202.1\|3098607_3099773_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.1e-72	46.6

DBSCAN-SWA_5

3550967 : 3593023

Stx2-converting_phage(33.33%)

integrase,transposase

attL 3545794:3545808|attR 3585012:3585026

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3545794:3545808	attL	NA	NA	NA	NA
WP_150119692.1\|3550967_3551351_+\|transposase	transposase	NA	NA	NA	NA
WP_061941207.1\|3551347_3551695_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	7.0e-44	75.7
WP_061941209.1\|3551724_3553284_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	5.2e-155	55.1
WP_061941211.1\|3553339_3553897_+	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_061941920.1\|3554363_3554705_-	hypothetical protein	NA	NA	NA	NA
WP_061941921.1\|3554786_3555221_-	hypothetical protein	NA	NA	NA	NA
WP_082792892.1\|3555499_3557116_+\|integrase	tyrosine-type recombinase/integrase	Q774Z5	Bordetella_phage	1.7e-55	35.7
WP_099047303.1\|3557119_3557878_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_082792896.1\|3558017_3564740_-	hypothetical protein	NA	NA	NA	NA
WP_150119722.1\|3564787_3564988_-	hypothetical protein	NA	NA	NA	NA
WP_150119723.1\|3565151_3565910_-	hypothetical protein	A0A1V0SKV6	Klosneuvirus	6.1e-24	31.1
WP_082792898.1\|3565949_3566228_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_061941931.1\|3566262_3566805_-	hypothetical protein	NA	NA	NA	NA
WP_082792900.1\|3566801_3568505_-	LysM peptidoglycan-binding domain-containing protein	A0A2H4JIA8	uncultured_Caudovirales_phage	1.5e-17	23.3
WP_061946317.1\|3571647_3571965_+	hypothetical protein	NA	NA	NA	NA
WP_082792902.1\|3572072_3573140_+	DUF746 domain-containing protein	NA	NA	NA	NA
WP_061946319.1\|3573375_3573858_-	lipocalin-like domain-containing protein	NA	NA	NA	NA
WP_150119724.1\|3574182_3574578_-	hypothetical protein	NA	NA	NA	NA
WP_061941941.1\|3574918_3575155_-	helix-turn-helix transcriptional regulator	A0A2K9V490	Faecalibacterium_phage	2.7e-07	41.7
WP_150119725.1\|3575155_3575710_-	DUF2975 domain-containing protein	NA	NA	NA	NA
WP_150119726.1\|3576347_3580043_+	hypothetical protein	NA	NA	NA	NA
WP_061941947.1\|3580056_3580818_-	hypothetical protein	NA	NA	NA	NA
WP_061941948.1\|3580995_3581739_-	hypothetical protein	NA	NA	NA	NA
WP_061941950.1\|3581748_3581973_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_061941952.1\|3582759_3583104_+	hypothetical protein	NA	NA	NA	NA
WP_061941954.1\|3583201_3584098_+	hypothetical protein	NA	NA	NA	NA
WP_061941956.1\|3584119_3584386_+\|transposase	transposase	NA	NA	NA	NA
WP_167595182.1\|3584658_3585882_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
3585012:3585026	attR	NA	NA	NA	NA
WP_061941958.1\|3586010_3586904_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_061941960.1\|3587266_3587509_-	Atu4866 domain-containing protein	NA	NA	NA	NA
WP_099047211.1\|3588632_3589127_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_061945813.1\|3589309_3590746_+\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_061941962.1\|3590942_3591485_-	hypothetical protein	NA	NA	NA	NA
WP_167595183.1\|3591694_3591853_+	hypothetical protein	NA	NA	NA	NA
WP_099047175.1\|3591935_3593023_-\|transposase	IS3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

3950762 : 3971713

Synechococcus_phage(100.0%)

integrase,plate

attL 3936238:3936252|attR 3956810:3956824

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3936238:3936252	attL	NA	NA	NA	NA
WP_150119743.1\|3950762_3952463_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_082792965.1\|3952496_3953675_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_014005219.1\|3954127_3954364_+	50S ribosomal protein L28	NA	NA	NA	NA
WP_009667251.1\|3954386_3954554_+	50S ribosomal protein L33	NA	NA	NA	NA
WP_099047220.1\|3954760_3955957_-	acyl-CoA desaturase	NA	NA	NA	NA
WP_061942465.1\|3956088_3957459_-	mechanosensitive ion channel	NA	NA	NA	NA
3956810:3956824	attR	NA	NA	NA	NA
WP_061942467.1\|3957576_3958830_-	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA
WP_061942469.1\|3958983_3959607_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.1e-20	35.1
WP_061942471.1\|3959655_3960054_-	barstar family protein	NA	NA	NA	NA
WP_061946369.1\|3960114_3960477_-	ribonuclease	NA	NA	NA	NA
WP_061942473.1\|3960653_3961862_-	Patatin	NA	NA	NA	NA
WP_061942475.1\|3962003_3962789_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_061942477.1\|3962785_3964132_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_082792968.1\|3964217_3964823_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_061942481.1\|3965088_3965676_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_061942483.1\|3965745_3966255_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_061942485.1\|3966256_3967744_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_061942487.1\|3967768_3968260_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_061942490.1\|3968327_3968819_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_061942492.1\|3968822_3970667_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_061942494.1\|3970630_3971713_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_7

4138588 : 4198542

Burkholderia_phage(25.0%)

integrase,transposase

attL 4161349:4161365|attR 4204356:4204372

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_082792986.1\|4138588_4139059_-\|transposase	transposase	NA	NA	NA	NA
WP_061942709.1\|4139514_4140384_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_061942711.1\|4140442_4141333_-	metal ABC transporter permease	NA	NA	NA	NA
WP_061942713.1\|4141329_4142073_-	metal ABC transporter ATP-binding protein	M1HY76	Paramecium_bursaria_Chlorella_virus	1.9e-06	26.4
WP_167595120.1\|4142069_4142228_-	hypothetical protein	NA	NA	NA	NA
WP_061942715.1\|4142236_4143469_-	GTP-binding protein	NA	NA	NA	NA
WP_061942717.1\|4143794_4144925_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_167595192.1\|4145480_4146338_-	S8 family serine peptidase	NA	NA	NA	NA
WP_061942725.1\|4148040_4148286_+	ferrous iron transport protein A	NA	NA	NA	NA
WP_061942727.1\|4148458_4150297_+	ferrous iron transporter B	NA	NA	NA	NA
WP_061942729.1\|4150293_4150593_+	hypothetical protein	NA	NA	NA	NA
WP_061946396.1\|4151596_4152562_-	sugar-binding transcriptional regulator	NA	NA	NA	NA
WP_082792990.1\|4152916_4154254_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_082792992.1\|4154430_4155360_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_061942731.1\|4155356_4156184_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_061946402.1\|4156192_4156909_+	HAD-IA family hydrolase	NA	NA	NA	NA
WP_061942733.1\|4156978_4158124_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G3M9Y6	Bacillus_virus	1.5e-21	30.2
WP_061942735.1\|4158212_4159613_+	mannitol dehydrogenase family protein	NA	NA	NA	NA
WP_061942737.1\|4159727_4161218_+	xylulokinase	NA	NA	NA	NA
4161349:4161365	attL	NA	NA	NA	NA
WP_061942739.1\|4161563_4162559_+\|integrase	site-specific integrase	A0A1B1P9F9	Acinetobacter_phage	2.7e-72	47.1
WP_061942741.1\|4162555_4162822_-	hypothetical protein	NA	NA	NA	NA
WP_061942743.1\|4162894_4165567_-	toprim domain-containing protein	A0A077K8T2	Ralstonia_phage	3.4e-271	54.4
WP_082792994.1\|4165902_4166145_-	ogr/Delta-like zinc finger family protein	K4PAZ0	Burkholderia_phage	2.0e-13	47.9
WP_061942745.1\|4166314_4166599_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_061942747.1\|4166797_4167169_+	helix-turn-helix transcriptional regulator	K4NXA8	Burkholderia_phage	4.1e-26	60.2
WP_061942749.1\|4167489_4168026_-	TIGR00645 family protein	K4K6D8	Caulobacter_phage	2.2e-12	26.1
WP_061942751.1\|4168257_4168785_-	response regulator	W8CYM9	Bacillus_phage	3.3e-13	37.8
WP_061942753.1\|4168781_4170686_-	response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	2.9e-22	33.2
WP_061538637.1\|4170682_4171456_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_061942755.1\|4171613_4172111_+	SgcJ/EcaC family oxidoreductase	NA	NA	NA	NA
WP_061942757.1\|4172826_4173207_+	VOC family protein	NA	NA	NA	NA
WP_061942759.1\|4173236_4174715_-	hypothetical protein	R9TRQ8	Vibrio_phage	2.6e-31	35.2
WP_099047175.1\|4174740_4175828_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_061942761.1\|4175868_4176261_-	PAAR domain-containing protein	R4JMI1	Burkholderia_phage	2.0e-18	44.4
WP_061942763.1\|4176915_4178055_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_150119744.1\|4178701_4180657_+	hypothetical protein	NA	NA	NA	NA
WP_061942770.1\|4183156_4184335_-	acyltransferase	C6ZR20	Salmonella_phage	1.5e-13	29.0
WP_061945813.1\|4184931_4186368_+\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_150119745.1\|4187043_4187430_-	hypothetical protein	NA	NA	NA	NA
WP_061942773.1\|4187498_4187873_-	hypothetical protein	NA	NA	NA	NA
WP_061942775.1\|4188132_4188585_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA
WP_061942777.1\|4189027_4189429_-	hypothetical protein	NA	NA	NA	NA
WP_061946403.1\|4189415_4189871_-	hypothetical protein	NA	NA	NA	NA
WP_061942779.1\|4189945_4192213_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_150119746.1\|4192450_4192759_+	hypothetical protein	NA	NA	NA	NA
WP_061942782.1\|4193295_4194150_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_061935832.1\|4194428_4195859_+\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_061942783.1\|4196046_4196466_-	hypothetical protein	NA	NA	NA	NA
WP_061942785.1\|4196481_4197075_-	hypothetical protein	NA	NA	NA	NA
WP_099047310.1\|4197455_4198542_+\|transposase	IS3 family transposase	NA	NA	NA	NA
4204356:4204372	attR	NA	NA	NA	NA

DBSCAN-SWA_8

4303722 : 4413294

109

Burkholderia_phage(36.17%)

capsid,holin,terminase,head,tRNA,portal,integrase,plate,tail

attL 4376973:4376994|attR 4400246:4400267

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061942935.1\|4303722_4305318_-\|holin	choline dehydrogenase	A0A1V0S9J5	Catovirus	5.3e-62	32.1
WP_061942937.1\|4305470_4305695_-	hypothetical protein	NA	NA	NA	NA
WP_061942939.1\|4305871_4306183_-	hypothetical protein	NA	NA	NA	NA
WP_061942940.1\|4306333_4306990_-	Pr6Pr family membrane protein	NA	NA	NA	NA
WP_061942941.1\|4306998_4307622_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	5.9e-25	37.4
WP_061946420.1\|4307660_4308746_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2I2L4R9	Orpheovirus	2.8e-46	37.0
WP_061942943.1\|4309469_4310390_-	PilW family protein	NA	NA	NA	NA
WP_061942944.1\|4310383_4310926_-	hypothetical protein	NA	NA	NA	NA
WP_061942946.1\|4311021_4311489_-	transcriptional repressor NrdR	NA	NA	NA	NA
WP_061942947.1\|4311704_4312952_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	4.3e-91	50.3
WP_082793018.1\|4313300_4315652_-	TonB-dependent receptor	NA	NA	NA	NA
WP_061942949.1\|4315938_4316685_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_061942951.1\|4316772_4317231_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA
WP_061942953.1\|4317454_4318156_+	protein TolQ	NA	NA	NA	NA
WP_061942954.1\|4318155_4318587_+	ExbD/TolR family protein	NA	NA	NA	NA
WP_061942956.1\|4318597_4319533_+	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_061942958.1\|4319536_4320820_+	Tol-Pal system protein TolB	NA	NA	NA	NA
WP_061942959.1\|4320879_4321401_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA
WP_099047223.1\|4321400_4322150_+	tol-pal system protein YbgF	NA	NA	NA	NA
WP_082793020.1\|4322450_4322723_-	fucose-binding lectin protein	NA	NA	NA	NA
WP_061942963.1\|4323201_4323903_+	pirin family protein	NA	NA	NA	NA
WP_061942965.1\|4324065_4324998_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_061942967.1\|4325040_4325964_-	sulfurtransferase	NA	NA	NA	NA
WP_061942969.1\|4326042_4326750_-	DUF1275 domain-containing protein	NA	NA	NA	NA
WP_061946429.1\|4326772_4328620_-	amidohydrolase	NA	NA	NA	NA
WP_061942971.1\|4328862_4330332_-	GGDEF domain-containing protein	G3MA91	Bacillus_virus	1.9e-13	34.9
WP_061942973.1\|4331637_4332942_-	cytochrome c	NA	NA	NA	NA
WP_082793023.1\|4332953_4333712_-	c-type cytochrome	NA	NA	NA	NA
WP_061942976.1\|4333823_4334015_-	hypothetical protein	NA	NA	NA	NA
WP_061942978.1\|4334179_4334605_-	hypothetical protein	NA	NA	NA	NA
WP_061942980.1\|4334803_4336102_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_061942982.1\|4336442_4336883_+	universal stress protein	NA	NA	NA	NA
WP_061942984.1\|4336940_4339061_-	PAS domain-containing protein	NA	NA	NA	NA
WP_061942986.1\|4339166_4339595_-	response regulator	NA	NA	NA	NA
WP_061942987.1\|4339727_4340360_-	response regulator transcription factor	NA	NA	NA	NA
WP_061942989.1\|4340572_4341124_-	hypothetical protein	NA	NA	NA	NA
WP_061942991.1\|4341382_4342996_+	FMN-binding glutamate synthase family protein	NA	NA	NA	NA
WP_061942993.1\|4343048_4343711_-	maleylacetoacetate isomerase	NA	NA	NA	NA
WP_061942995.1\|4343721_4344417_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_061942997.1\|4344465_4345656_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_061942999.1\|4345970_4346444_-	transcription antitermination factor NusB	NA	NA	NA	NA
WP_061943001.1\|4346596_4347082_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2I2L4Y7	Orpheovirus	1.4e-13	35.0
WP_061943003.1\|4347237_4348350_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.2e-47	34.2
WP_061946431.1\|4348592_4349606_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_061943005.1\|4349717_4350749_+\|integrase	site-specific integrase	A0A248XD46	Klebsiella_phage	2.1e-64	40.1
WP_061943008.1\|4350760_4350967_+	hypothetical protein	NA	NA	NA	NA
WP_061943011.1\|4351689_4352277_+	PAAR domain-containing protein	R4JMI1	Burkholderia_phage	4.2e-33	41.9
WP_061943013.1\|4352286_4352928_+	hypothetical protein	R4JJZ3	Burkholderia_phage	8.7e-56	54.2
WP_082793507.1\|4354005_4355190_+	methyltransferase	NA	NA	NA	NA
WP_061943017.1\|4355189_4357436_+	sensor histidine kinase	A0A1B5FPD5	Escherichia_phage	9.0e-07	31.3
WP_150119753.1\|4357438_4358794_+	hypothetical protein	NA	NA	NA	NA
WP_061943021.1\|4359101_4359311_-	DUF2116 family Zn-ribbon domain-containing protein	A0A2I7R756	Vibrio_phage	5.4e-07	40.3
WP_061943023.1\|4359307_4360360_-\|portal	phage portal protein	A4JWV0	Burkholderia_virus	1.7e-133	65.1
WP_082793026.1\|4360356_4362192_-\|terminase	terminase ATPase subunit family protein	E5FFI8	Burkholderia_phage	9.9e-230	65.9
WP_061943025.1\|4362329_4363148_+\|capsid	GPO family capsid scaffolding protein	E5FFI7	Burkholderia_phage	4.6e-62	50.4
WP_061943027.1\|4363207_4364215_+\|capsid	phage major capsid protein, P2 family	A4JWP9	Burkholderia_virus	4.2e-121	64.3
WP_061943029.1\|4364216_4364930_+\|integrase	integrase	E5FFI5	Burkholderia_phage	5.3e-38	44.8
WP_061943031.1\|4365026_4365518_+\|head	head completion/stabilization protein	A0A1S5NNA6	Burkholderia_phage	1.6e-33	48.5
WP_061943032.1\|4365517_4365727_+\|tail	phage tail protein	A0A1S6KZY4	Salmonella_phage	2.0e-17	62.3
WP_061943034.1\|4365741_4366098_+	hypothetical protein	E5FFI2	Burkholderia_phage	2.9e-29	62.3
WP_061943036.1\|4366090_4366360_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_061943039.1\|4366356_4366821_+	hypothetical protein	C7BGD8	Burkholderia_phage	1.1e-36	58.1
WP_061943041.1\|4366811_4367234_+	hypothetical protein	NA	NA	NA	NA
WP_061946435.1\|4367332_4367821_+\|tail	phage tail protein	Q9ZXL3	Pseudomonas_virus	1.3e-30	46.3
WP_061943043.1\|4367817_4368285_+	phage virion morphogenesis protein	A0A2H4J927	uncultured_Caudovirales_phage	3.5e-38	57.9
WP_167595194.1\|4368288_4368777_-	YcxB family protein	NA	NA	NA	NA
WP_061943047.1\|4368837_4369605_-	DNA adenine methylase	Q5ZQW7	Pseudomonas_phage	9.6e-94	63.3
WP_082793029.1\|4369576_4369789_-	Com family DNA-binding transcriptional regulator	A0A1S5NPS9	Burkholderia_phage	3.5e-14	75.0
WP_061943050.1\|4370045_4370711_+\|plate	phage baseplate assembly protein V	E5E3V6	Burkholderia_phage	7.9e-28	36.7
WP_061943051.1\|4370710_4371046_+	oxidoreductase	Q9ZXK9	Pseudomonas_virus	6.0e-24	54.0
WP_061943053.1\|4371042_4371933_+\|plate	baseplate assembly protein	R4JDM0	Burkholderia_phage	6.6e-78	54.0
WP_167595235.1\|4371944_4372490_+\|tail	phage tail protein I	E5FFH2	Burkholderia_phage	4.2e-51	54.5
WP_061943057.1\|4372496_4374605_+	hypothetical protein	V9IQX0	Stenotrophomonas_phage	3.2e-30	43.6
WP_061943059.1\|4374604_4375192_+	hypothetical protein	A0A2H4J9Z7	uncultured_Caudovirales_phage	4.3e-09	36.6
WP_061943061.1\|4375219_4376392_+\|tail	phage tail sheath protein	E5FFG9	Burkholderia_phage	8.2e-161	70.6
WP_061943063.1\|4376419_4376929_+\|tail	phage major tail tube protein	E5E3U9	Burkholderia_phage	9.3e-53	58.6
4376973:4376994	attL	NA	NA	NA	NA
WP_061943065.1\|4376985_4377309_+\|tail	phage tail assembly protein	A4PE51	Ralstonia_virus	3.2e-22	57.7
WP_082793033.1\|4377317_4377434_+\|tail	GpE family phage tail protein	Q9ZXK1	Pseudomonas_virus	3.9e-07	67.6
WP_061943067.1\|4377446_4380167_+	hypothetical protein	A4PE52	Ralstonia_virus	2.1e-220	50.0
WP_061943069.1\|4380178_4380706_+\|tail	phage tail protein	A0A2H4JG54	uncultured_Caudovirales_phage	3.3e-37	57.1
WP_061943070.1\|4380705_4381968_+	phage late control D family protein	A0A2H4JAV0	uncultured_Caudovirales_phage	9.9e-88	44.7
WP_061943072.1\|4382214_4382643_-	hypothetical protein	NA	NA	NA	NA
WP_167595195.1\|4383516_4384320_-	DUF91 domain-containing protein	NA	NA	NA	NA
WP_167595196.1\|4384961_4385441_-	helix-turn-helix domain-containing protein	K4NXA8	Burkholderia_phage	5.0e-24	45.1
WP_150119755.1\|4385513_4385711_+	hypothetical protein	NA	NA	NA	NA
WP_082793037.1\|4385722_4385974_+	ogr/Delta-like zinc finger family protein	K4PAZ0	Burkholderia_phage	1.4e-14	48.1
WP_150119756.1\|4386104_4386323_+	hypothetical protein	NA	NA	NA	NA
WP_061943082.1\|4386430_4386769_+	hypothetical protein	NA	NA	NA	NA
WP_061943084.1\|4386765_4388733_+	replication endonuclease	A4JWW0	Burkholderia_virus	5.9e-79	36.0
WP_061943086.1\|4388729_4388918_+	hypothetical protein	NA	NA	NA	NA
WP_061943089.1\|4388910_4389198_+	hypothetical protein	NA	NA	NA	NA
WP_099047224.1\|4389188_4390121_+	DNA cytosine methyltransferase	Q6J1P4	Burkholderia_virus	3.0e-97	56.3
WP_082793509.1\|4390123_4390360_+	hypothetical protein	NA	NA	NA	NA
WP_150119757.1\|4390431_4391055_-	hypothetical protein	NA	NA	NA	NA
WP_099047312.1\|4391512_4392403_+\|integrase	site-specific integrase	A0A2D1GMX8	Marinobacter_phage	1.5e-45	34.4
WP_150119758.1\|4392357_4392921_-	hypothetical protein	NA	NA	NA	NA
WP_061943096.1\|4392930_4393161_-	hypothetical protein	NA	NA	NA	NA
WP_061942182.1\|4394168_4395626_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.2e-147	54.9
WP_150119759.1\|4396317_4397307_+	hypothetical protein	NA	NA	NA	NA
WP_061943021.1\|4398242_4398452_-	DUF2116 family Zn-ribbon domain-containing protein	A0A2I7R756	Vibrio_phage	5.4e-07	40.3
WP_082793511.1\|4398448_4400185_-\|portal	phage portal protein	E5E3X1	Burkholderia_phage	1.1e-132	69.1
WP_061943102.1\|4400245_4400581_-	hypothetical protein	NA	NA	NA	NA
4400246:4400267	attR	NA	NA	NA	NA
WP_150119760.1\|4400539_4401577_+	hypothetical protein	A4PE52	Ralstonia_virus	5.4e-108	58.4
WP_082793042.1\|4402739_4406045_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_061943106.1\|4406610_4407174_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_061943108.1\|4407279_4408371_-	peptidase	NA	NA	NA	NA
WP_061943110.1\|4408662_4410009_+	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_061943112.1\|4410236_4412072_-	translational GTPase TypA	NA	NA	NA	NA
WP_061943114.1\|4412340_4413294_-\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013234

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection