CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP014158	Pseudomonas citronellolis strain P3B5 chromosome, complete genome	3 crisprs	DEDDh,DinG,cas3,csa3,PD-DExK,WYL	0	3	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014158_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014158_1

219152-219361

Orphan

I-F

Consensus_repeat	Method
CTTTTCTTAGCTGCCTACACGGCAGTGAAG	CRISPRCasFinder
CTTTTCTTAGCTGCCTACACGGCAGTGAAG	CRT
CTTTTCTTAGCTGCCTACACGGCAGTGAAG	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP014158_1

>merge|NZ_CP014158|1|219152-219361|CRISPRCasFinder,CRT,PILER-CR
TGCTTTTTAGCTGCCTACACGGCAGTGAAGCACGAGATCAACCGGGCCTACTGCGCCTCGCTTTTCTTAGCTGCCTACACGGCAGTGAAGCTGCTGGAAATGCCCGAGCAGACCCAGCGTCTTTTCTTAGCTGCCTACACGGCAGTGAAGGTGCTGCTCACCGACGGATCCCTGGCGTTCCTTTTCTTAGCTGCCTACACGGCAGTGAAG

>NZ_CP014158|1|1|219152-219361|CRISPRCasFinder
TGCTTTTTAGCTGCCTACACGGCAGTGAAG	CACGAGATCAACCGGGCCTACTGCGCCTCG
CTTTTCTTAGCTGCCTACACGGCAGTGAAG	CTGCTGGAAATGCCCGAGCAGACCCAGCGT
CTTTTCTTAGCTGCCTACACGGCAGTGAAG	GTGCTGCTCACCGACGGATCCCTGGCGTTC
CTTTTCTTAGCTGCCTACACGGCAGTGAAG

>NZ_CP014158|1|1|219152-219361|CRT
TGCTTTTTAGCTGCCTACACGGCAGTGAAG	CACGAGATCAACCGGGCCTACTGCGCCTCG
CTTTTCTTAGCTGCCTACACGGCAGTGAAG	CTGCTGGAAATGCCCGAGCAGACCCAGCGT
CTTTTCTTAGCTGCCTACACGGCAGTGAAG	GTGCTGCTCACCGACGGATCCCTGGCGTTC
CTTTTCTTAGCTGCCTACACGGCAGTGAAG

>NZ_CP014158|1|1|219212-219361|PILER-CR
CTTTTCTTAGCTGCCTACACGGCAGTGAAG	CTGCTGGAAATGCCCGAGCAGACCCAGCGT
CTTTTCTTAGCTGCCTACACGGCAGTGAAG	GTGCTGCTCACCGACGGATCCCTGGCGTTC
CTTTTCTTAGCTGCCTACACGGCAGTGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014158.1\|WP_061560347.1\|228824_229763_+\|choline-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|188316
NZ_CP014158.1\|WP_061560343.1\|219575_220226_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|319798
NZ_CP014158.1\|WP_061560340.1\|213349_215863_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|183097
NZ_CP014158.1\|WP_061560342.1\|218524_219067_+\|gamma-carbonic-anhydrase-family-protein	unknown	unknown	gnl\|CDD\|100051
NZ_CP014158.1\|WP_061560339.1\|209084_209801_-\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|238449
NZ_CP014158.1\|WP_061560341.1\|216400_218446_-\|oligopeptidase-A	unknown	unknown	gnl\|CDD\|341051
NZ_CP014158.1\|WP_009614790.1\|224501_225605_-\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
NZ_CP014158.1\|WP_043269901.1\|216134_216401_-\|YheV-family-putative-metal-binding-protein	unknown	unknown	gnl\|CDD\|312883
NZ_CP014158.1\|WP_043318482.1\|211458_213084_-\|inorganic-phosphate-transporter	unknown	unknown	gnl\|CDD\|223383
NZ_CP014158.1\|WP_009614795.1\|229804_230644_+\|choline-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|188318
NZ_CP014158.1\|WP_009614787.1\|222442_222985_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014158.1\|WP_009614763.1\|206040_206256_-\|DUF3079-domain-containing-protein	unknown	unknown	gnl\|CDD\|337966
NZ_CP014158.1\|WP_043318484.1\|210048_211110_-\|PA0069-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|275263
NZ_CP014158.1\|WP_061560337.1\|206444_207026_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|369095
NZ_CP014158.1\|WP_061560344.1\|220438_222433_+\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|225118
NZ_CP014158.1\|WP_061560338.1\|207363_208908_-\|SulP-family-inorganic-anion-transporter	unknown	unknown	gnl\|CDD\|223732
NZ_CP014158.1\|WP_061560346.1\|225969_227346_-\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|273233
NZ_CP014158.1\|WP_009614792.1\|227677_228604_+\|choline-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|188316
NZ_CP014158.1\|WP_009614788.1\|223010_223391_+\|DUF1987-domain-containing-protein	unknown	unknown	gnl\|CDD\|378154
NZ_CP014158.1\|WP_134163490.1\|223560_224193_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635

Protein	Function_ID	Function_description	E-value
NZ_CP014158.1\|WP_061560347.1\|228824_229763_+\|choline-ABC-transporter-substrate-binding-protein	gnl\|CDD\|188316	TIGR03414, ABC_choline_bnd, choline ABC transporter, periplasmic binding protein. Partial phylogenetic profiling () vs. the genome property of glycine betaine biosynthesis from choline consistently reveals a member of this ABC transporter periplasmic binding protein as the best match, save for the betaine biosynthesis enzymes themselves. Genomes often carry several paralogs, one encoded together with the permease and ATP-binding components and another encoded next to a choline-sulfatase gene, suggesting that different members of this protein family interact with shared components and give some flexibility in substrate. Of two members from Sinorhizobium meliloti 1021, one designated ChoX has been shown experimentally to bind choline (though not various related compounds such as betaine) and to be required for about 60 % of choline uptake. Members of this protein have an invariant Cys residue near the N-terminus and likely are lipoproteins. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP014158.1\|WP_061560343.1\|219575_220226_+\|HAD-family-hydrolase	gnl\|CDD\|319798	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065. 5'-nucleotidases dephosphorylate nucleoside 5'-monophosphates to nucleosides and inorganic phosphate. Purified Pseudomonas aeruginosa PA0065 displayed high activity toward 5'-UMP and 5'-IMP, significant activity against 5'-XMP and 5'-TMP, and low activity against 5'-CMP. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.7258e-98
NZ_CP014158.1\|WP_061560340.1\|213349_215863_+\|EAL-domain-containing-protein	gnl\|CDD\|183097	PRK11359, PRK11359, cyclic-di-GMP phosphodiesterase; Provisional.	0
NZ_CP014158.1\|WP_061560342.1\|218524_219067_+\|gamma-carbonic-anhydrase-family-protein	gnl\|CDD\|100051	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.	2.17087e-80
NZ_CP014158.1\|WP_061560339.1\|209084_209801_-\|carbonic-anhydrase	gnl\|CDD\|238449	cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	8.92997e-100
NZ_CP014158.1\|WP_061560341.1\|216400_218446_-\|oligopeptidase-A	gnl\|CDD\|341051	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP). Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70). DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from Escherichia coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). OpdA may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala. This family also includes Arabidopsis thaliana organellar oligopeptidase OOP (At5g65620), which plays a role in targeting peptide degradation in mitochondria and chloroplasts; it degrades peptide substrates that are between 8 to 23 amino acid residues, and shows a weak preference for hydrophobic residues (F/L) at the P1 position.	0
NZ_CP014158.1\|WP_009614790.1\|224501_225605_-\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	3.83512e-146
NZ_CP014158.1\|WP_043269901.1\|216134_216401_-\|YheV-family-putative-metal-binding-protein	gnl\|CDD\|312883	pfam09526, DUF2387, Probable metal-binding protein (DUF2387). Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.	1.79922e-39
NZ_CP014158.1\|WP_043318482.1\|211458_213084_-\|inorganic-phosphate-transporter	gnl\|CDD\|223383	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism].	3.20126e-53
NZ_CP014158.1\|WP_009614795.1\|229804_230644_+\|choline-ABC-transporter-permease-subunit	gnl\|CDD\|188318	TIGR03416, ABC_choXWV_perm, choline ABC transporter, permease protein.	1.97976e-142
NZ_CP014158.1\|WP_061560346.1\|225969_227346_-\|L-serine-ammonia-lyase	gnl\|CDD\|273233	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form. This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein. [Energy metabolism, Amino acids and amines, Energy metabolism, Glycolysis/gluconeogenesis].	0
NZ_CP014158.1\|WP_009614763.1\|206040_206256_-\|DUF3079-domain-containing-protein	gnl\|CDD\|337966	pfam11278, DUF3079, Protein of unknown function (DUF3079). This family of proteins with unknown function appears to be restricted to Proteobacteria.	7.53754e-32
NZ_CP014158.1\|WP_043318484.1\|210048_211110_-\|PA0069-family-radical-SAM-protein	gnl\|CDD\|275263	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B. Members of this family are the downstream member (B) of a pair of tandem-encoded radical SAM enzymes. Most of these radical SAM gene pairs have an additional upstream regulatory gene in the MarR family. Examples of high sequence identity (over 96 percent) from cassettes in several Treponema species of the oral cavity to those in multiple Firmicutes in the gut microbiome suggest recent lateral gene transfer, as might be expected for antibiotic resistance genes. The function is unknown.	2.06417e-23
NZ_CP014158.1\|WP_061560337.1\|206444_207026_+\|alpha/beta-hydrolase	gnl\|CDD\|369095	pfam06821, Ser_hydrolase, Serine hydrolase. Members of this family have serine hydrolase activity. They contain a conserved serine hydrolase motif, GXSXG/A, where the serine is a putative nucleophile. This family has an alpha-beta hydrolase fold. Eukaryotic members of this family have a conserved LXCXE motif, which binds to retinoblastomas. This motif is absent from prokaryotic members of this family.	2.3275e-73
NZ_CP014158.1\|WP_061560344.1\|220438_222433_+\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|225118	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription].	4.35074e-45
NZ_CP014158.1\|WP_061560338.1\|207363_208908_-\|SulP-family-inorganic-anion-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	1.96508e-110
NZ_CP014158.1\|WP_009614792.1\|227677_228604_+\|choline-ABC-transporter-substrate-binding-protein	gnl\|CDD\|188316	TIGR03414, ABC_choline_bnd, choline ABC transporter, periplasmic binding protein. Partial phylogenetic profiling () vs. the genome property of glycine betaine biosynthesis from choline consistently reveals a member of this ABC transporter periplasmic binding protein as the best match, save for the betaine biosynthesis enzymes themselves. Genomes often carry several paralogs, one encoded together with the permease and ATP-binding components and another encoded next to a choline-sulfatase gene, suggesting that different members of this protein family interact with shared components and give some flexibility in substrate. Of two members from Sinorhizobium meliloti 1021, one designated ChoX has been shown experimentally to bind choline (though not various related compounds such as betaine) and to be required for about 60 % of choline uptake. Members of this protein have an invariant Cys residue near the N-terminus and likely are lipoproteins. [Transport and binding proteins, Amino acids, peptides and amines].	3.12362e-173
NZ_CP014158.1\|WP_009614788.1\|223010_223391_+\|DUF1987-domain-containing-protein	gnl\|CDD\|378154	pfam09345, DUF1987, Domain of unknown function (DUF1987). This family of proteins are functionally uncharacterized.	1.61727e-53
NZ_CP014158.1\|WP_134163490.1\|223560_224193_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.03605e-63

>NZ_CP014158.1|WP_061560342.1|218524_219067_+|gamma-carbonic-anhydrase-family-protein
MAIRSYQGKTPQLGERVFVDPSAVLIGDIEIGADSSVWPQVTIRGDMHRIRIGSRTSIQDGSVLHITHAGPYNPDGFPLTIGDEVTVGHKVLLHGCSVGNRVLVGMGCIVMDGAVIEDEVILGAGSLVPPGKVLESGFLYVGSPAKKARPLSDKERSFFAYTAGNYVKLKDQHIAEGYAE
>NZ_CP014158.1|WP_061560341.1|216400_218446_-|oligopeptidase-A
MSANPLLQSYDLPPFSAIRPEHVKPAIEQILADNRAAIARILAEQGANPSWDGLVLAMDELHARLGAAWSPVSHLNAVCNSAELREAYEGCLPLLSAYWTELGQNRELFKAYEALAASPAAANFDVAQKTILEHALRDFRLSGIDLPAEQQKRYAEIQARLSELGSRFSNQLLDATQAWTKHVTDEAALAGLTDSAKAQMQQAAQAKGLDGWLISLEFPSYFAVMTYADDRALREEVYAAYCTRASDQGPNAGQNDNGPVMQEILDLRQELARLLGYANFSALSLATKMAESPEQVLHFLRDLAVRSKPYAQQDLDQLKAYAAEQGCAQLQSWDSGYYGEKLREARYSVSQEALRAYFPVDKVLSGLFAIVQKLYGIQIRELHDFERWHPDVRLFEIEENGQHVGRFYFDLYARANKRGGAWMDGARDRRRDAAGQLIAPVAYLVCNFTPAVNGKPALLTHDEVTTLFHEFGHGLHHLLTRVEHAGASGINGVAWDAVELPSQFMENWCWEPEGLALISGHYESGAPLPQDILEKMLAAKNFQSGLMMVRQLEFSLFDFELHTSHGDGRSVLDVLNGVRDEVAVMRPPAYNRFANSFAHIFAGGYAAGYYSYKWAEVLSADAFSRFEEEGVFNPQTGAAFREAILAKGGSQEPMALFVAFRGREPSIDALLRHSGLTGEAA
>NZ_CP014158.1|WP_043269901.1|216134_216401_-|YheV-family-putative-metal-binding-protein
MAEVKKRFIAGAVCPACSEQDKILMWDEDGVPHRECVACGYADTLNAQGQSVPKELATRVNASALKKPADPKVQGVQFFPNPKLKKKD
>NZ_CP014158.1|WP_061560340.1|213349_215863_+|EAL-domain-containing-protein
MPYDQLPDVFAQILEQAIDGVVVLDEHNRVLLFNAAAERLWGYSREAVLGQDVGLLLPREVRPRLDASLDTEGIVGSRSEVPMRCRDGSRLWGSMSISHIEFDGKRLLAAFVKDCTLQRRQREQMDVLSLAANETDNAVIVTGREGRILYVNAGFSRMFGWNAEQAQGRYPSELLQVPQASVRRWRQAGAGLFRSEELVRDLIGRPLWCSVVANPILDARGQPVNSVMLLTDITHTKLHEVLQNKVLDALVRERPLVDVMDLVCREVERIAPEVKASILRVDAQGRMHPLAAPSLPEAFSQSIEGARMGPHAGSCGTAAYRGKAVMVSDIASDPLWDDYRQLALPLGLKACWSSPIKNSEGRVIGTFAFYYEQCRGPDELHLRLVDVSLPLCALALEREEARAHIRQLAFYDTLTGLPNRSLLLAEAEQAMTRIENDEAEMAVLFIDLDRFKQINDSLGHPAGDELLRLVAARLQEVVREQGLVGRLSGDEFVVVLPYCGGLLASQIAERILARLALAHRVGGVSLITLASIGISLFPSNGRDMETLLHRADIAMYQAKNGGRGSYRFFSEEMNQRAQERLALESALREAVQRQALSLHYQPQVRLDDGRVHAVEALARWRHPQLGAVAPNRFIPLAEECGIIGELSQWVLREACRQLADWRRRGIHIPAVAVNLSPADFRDPDLPVRLQDLLQRNGLAGTDLVVEITEGMLLDNHPATLDILRAVHGLGVRLSMDDFGTGYSSLGYLHRLPISELKLDRSFVAELNAGAAAQALTDAVMNIGRSLELMVVAEGVEDEAQLELLRQQGYPVAQGYLFSRPLPAAALEEWLVRRGREG
>NZ_CP014158.1|WP_043318482.1|211458_213084_-|inorganic-phosphate-transporter
MLDRYHLLQSLRATRVSRMPVNPVLQEVATPTGQVLFFLLLGGGLVYTFGNLALDILAQGGQLRPSGTLLVLALALLIALGFEFINGFHDTANAVATVIYTNALPPQLAVGWSGLWNLLGVLFSSGAVAFGIVTLLPLDLLLRVDSAAGLAMIFALLGASILWNLGTWWLGLPVSSSHTLIGSIVGVSLAHGVLSGELGIDGSAWEQLQKVGYALLLSPLLGFLGAGLLLLGMRAVARRKTLFSAPQGRQPPPLGIRALLVLTCTGVSFAHGSNDGQKGIGLIMLILAALMPLSFAVDRGQAPAQVQQLRELAHRAELQLRRLAPEDIPTAPRRVLLDYQSEQRLTPEVLPALAAQLHNIGARLRGHDDLSGLPDDEVLALHNELYLSVETIRQLDRTEQVFDVDTWSTLQALRDRSLDTVQFIPPWVKVAVALALGLGTLVGWRRIVTTVGEGIGKQPLTYAQGASAQLTAMLTIGAADIYGLPVSTTQVLSSGVAGTMTANGSGLQWQTIRNMLLAWVLTLPAAICLAALLYWSLRALI
>NZ_CP014158.1|WP_043318484.1|210048_211110_-|PA0069-family-radical-SAM-protein
MSSPLPPRGRGTASNPHNRFAPTRSEAEDDGWYQDEAPPCRATEVRMEQAKTVISRNQSPDVGFDRSINPYRGCEHGCIYCFARPSHAYWDLSPGIDFETRLIAKTNLAERLEAELSKPGYVPRPIALGINTDAYQPLEREQRLTRQALEILLRFRHPLHIITKGSLILRDLDLLGELASLNLVSVAFSLTTLDNELKRIMEPRTASPGARLRAMRTLHEHGVPVSAVLAPMIPMVNDMELERLLEAAHDNGARSAGYILLRLPLEISELFQQWLQAHFPDRAEHVMSLIRQSRGGKDYDSRFGTRMRGEGVFAELLAKRFQLAARRLGLDRRDYGGLDCSLFQVPRAQMSLF
>NZ_CP014158.1|WP_061560339.1|209084_209801_-|carbonic-anhydrase
MNDKSHGEEHITENADEALRRIVEGFRQFRQEVFPQQEALFKKLAHAQNPRAMFITCADSRIVPELITQSSPGDLFVTRNVGNVVPPYGQMNGGVSTAIEFAVMALGVQHIIICGHSDCGAMKAVLDPQTLERMPTVKAWLRHAEVAKTVVEQNCGCASHDTLDILTEENVVAQLDHLKTHPSVAARLASGQLFIHGWVYDIETSQIKAYDAEVGHFRPLDGEGPMPMATPRPRYSQS
>NZ_CP014158.1|WP_061560338.1|207363_208908_-|SulP-family-inorganic-anion-transporter
MPVPQPLHAPLRALKDNLPRDLLASVVVFLVALPLCMGIAIASGMPPAKGMLTGIVGGLVVGLLAGSPLQVSGPAAGLAVLVFELVRSHGMAMLGPILLLAGLIQLVAGRLRLGCWFRVTAPAVVYGMLAGIGILIVLSQVHVMLDLQPQASGLDNLLAFPGALAASLGNGPQALALGLGTMALMWGWERFRPARLRFLPGALLGVSAATLASLALPMDVLRVEVPEQLSQAIDWVRPADLLRLAEPELLLAALAVAFIASAETLLSAAAVDRIHQGPRSDMDRELSAQGVGNLICGLLGALPMTGVIVRSSANVQAGARSRLSAILHGLWLLAFVALLGGLLRQIPIAGLAGVLVYTGLKLADPKALTGLLRYGRMPALVYLATALGIVLTDLLTGVLVGFALTLLKLALKAARLKASLHYNGAGDEAELRLVGAATFLRVPQLARLLDQVKPGTTLHVPLQHLRYIDHACMELLEDWGRAAAAKGCRLSLESHGLRRRLEGRARREAGAAGS
>NZ_CP014158.1|WP_061560337.1|206444_207026_+|alpha/beta-hydrolase
MRSERVRYVLVPGWHGSEDEHWQSHWQRALPNASRVEQRDWVTPRHVDWVAELDREIRRQPGRVVLIAHSLGCVTVASWARRAGPRALAQVAGALLVAPADVERETCHAALRNFAPIALDALPFPSVLVGSDNDAACSPQRALQLGRAWGAETLILPDAGHINVKSGHGAWEAGYRHLFRLQYLIDQRERRRA
>NZ_CP014158.1|WP_009614763.1|206040_206256_-|DUF3079-domain-containing-protein
MAKKFPLHPAHPERICWGCDRYCPASAMGCGNGSSRTQHPIETFGEDWADGSDWGLDETPAQPIEVRQPTP
>NZ_CP014158.1|WP_061560343.1|219575_220226_+|HAD-family-hydrolase
MHYQNILFDLDGTLTDPREGITRSIQYALAQLGIDESDLRRLEHFIGPPLLQCFMSTYGFDEARAWEAVNHYRMRFKDTGLYENRVFDGVGELLALLGGQGRTLFIATSKPTVFAAEIARHFDFARHFKVIYGSELDGTRTNKVELIEHLLRLEGLDPAQTLMIGDRKHDLIGAHRNGLSAAGVGYGFGSREELLAESPAHYFANLGELHAAFAAG
>NZ_CP014158.1|WP_061560344.1|220438_222433_+|SpoIIE-family-protein-phosphatase
MAARWGLRGKSVVALLLACVLALVPAVLLGWKAMEDIRTHFGLAYAKNFTLLNQQKILAPVIRELSLSRRLAESVVTQDWLLDESSSERRTRFFREADGYRGDQGEYSYFVIVDSSLHYYFNDSTSPLSNAPRYTLSRDDPQDAWYFATMASDSPYNINVNYDAKLRATKVWFNVQVIAGNHKVGLAGGGLDLTAFLDQFISRREPGVTPMIVDADGAIQAHPDRKLIALSSGAGTAENAGHRVFDLLASDEERKGLRQVLDDAQAHPGEVRTFWATLDGKRQLLATAYIPELRWHVLSAVDLHAAQVLDSRWIWPLAGTLLGLLALLLIGFAYTVELLLLKPLRGLRQSAKAIAAGQYDNPLPKSRGDEIGELSDAFASMANQVRRHTEDLEDKVRQRTQALEQANREMAAAQKKIGDSIDYASLIQRAILPDRQLQSSLGQHHFVLWKPRDVVGGDFYIYREGSEDSLIGVVDCAGHGVPGALMTMLALAAIDHAIDSVQSHDPASILRETDQVMRGMIGQERVTQALATNMDAGFVRVDHGRRLLHFSGAKISLFASNGDEVREYKGGRRAIGDKRQGEYENIQLPLEPGWTFYLCTDGFLDQAGGEHGFGFGNSRFAELLRRHSRLPLAEQARVFAATLADYQGERPQRDDITILSFRFE
>NZ_CP014158.1|WP_009614787.1|222442_222985_+|hypothetical-protein
METLDLLAMRESYTRQRILLCFNGPISRSLIEEIGHALRNYMQAEQAHPSEAMDVFAVYIEMTQNIRHYATQRGYGDQDASATVAIARDDDGHYVVSAGNLVELADGRELVRNIEAIAGLDKAQLKAAYKEQLRRPRDSGVSSGAGLGLLDIARKSSMPLQTSLTEQPDGRAFFSLRAVI
>NZ_CP014158.1|WP_009614788.1|223010_223391_+|DUF1987-domain-containing-protein
MSDLHISGTQSTPSIHGDWEAGVLAMQGDSYPENSYELFGQVIEWVERFLAGEQRPLALDLRLLYLNTSSIKAMMDIFDLLEEAHRNGRQTQVSWHYDRRNERVAELAEEFREDCSFPFVIQPYDE
>NZ_CP014158.1|WP_134163490.1|223560_224193_+|GGDEF-domain-containing-protein
MARAQNSTLSERYHKQLRQLEKVARISDRYQNMMRDLNVALREASTHDPLTGIGNRRLLMERLREESERAQRSGKPYVLVILDIDHFKQVNDTWGHEVGDRVLVEIGCTMQAALRQYDLCGRWGGEEFLLLLPETAMADADQVIDRVRQDIRSLAVRVGTEALSVTASFGVAEYRLGESYSQTLSRADAALLEAKRSGRDKCVASAVASG
>NZ_CP014158.1|WP_009614790.1|224501_225605_-|GlxA-family-transcriptional-regulator
MNAFNPGVPPQNRAPQSIGFLLLDNFTLISLASAVEPLRMANQLSGRELYRWHTLTLDGRQVWASDGLQITPDASTDGAPPMDSLIVVGGVGIQRSVTREHVSFLQTQARLGRRLGAVCTGSWALARAGLLDGYDCSVHWECLAAMQEAFPRVAMSTRLFSIDRNRYTSSGGTAPMDMMLHLIGREHGRELSAAISEMFIYERIRNEQDHQRVPLKHMLGTNQPKLQEIVALMEANLEEPIDLDELAVYVNVSRRQLERLFQKYLHCSPSRYYLKLRLIRARQLLKQTSMSIIEVASVCGFVSTPHFSKCYREYFGIPPRDERQGQPIGQPVMVMPIPQDLALMPHSSAISALSQAQGESTFASVRV
>NZ_CP014158.1|WP_061560346.1|225969_227346_-|L-serine-ammonia-lyase
MAISVFDLFKIGIGPSSSHTVGPMRAAALFVGALRERQLLPRVSRVEVKLYGSLSATGVGHGTDRAVIMGLMGEWPDRIDPSQIAPRMADLLGSGELLLAGERRIAFDWVRDMRLLEENLPYHPNAMSLVAYEGDAELYADTYYSIGGGFVVDAEQAATGSLDQDATRLPYDFNSAAELLQLCRRHNLRVSQLMLANERMWRSDTDTRDGLMRIWHAMQDCVNNGLKAEGILPGGLNVQRRAARLHRNLLEIGKPNVIGSTLSAMEWVNLYALAVNEENAAGGRMVTAPTNGAAGIVPAVLHYYMRFNPDASEQDVVDFFLAAAAVGILCKKNASISGAEVGCQGEVGSACAMAAAGLAEVLGASPEQVENAAEIGLEHNLGLTCDPVGGLVQVPCIERNAIAAVKAINAAQMALRGDGQHFISLDQAIRTMRDTGADMHDKYKETSRGGLAVSIIEC
>NZ_CP014158.1|WP_009614792.1|227677_228604_+|choline-ABC-transporter-substrate-binding-protein
MKCFLLSLLALPVLCSGLAQAAEPQSCSLVRFADVGWTDITVTTAVTRLVLSEQGYRTKVERLSVPDTYKAMAEKRIDVFLGNWMPSMAADIKPYADNGQVQTVRANLEGAKYTLAVPQYAYDAGLKSFADIARFKEQLGGKIYGIEPGNDGNQLIRKMIAEKAFGLGDFQLVESSEADMLASVRRAGALKQPIVFLGWEPHPMNTRLQMRYLEGGDAYFGPNYGGATVYTNVRAGYLDECPNVAQLLRNLKFDLAMENRLMDAVLNERSNPRQAAKDWLQANPQVRDAWLKGVQPRAQAQSKAVAQQ
>NZ_CP014158.1|WP_061560347.1|228824_229763_+|choline-ABC-transporter-substrate-binding-protein
MKGCKSLLLAVSLSTPLVVQAAEPESCGTVRFSDVGWTDITVTTATTRQVLESLGYTTKVNMLSVPVTYRSLANKDLDVFLGNWMPSMANDIKPYADNGSVETVRANLEGAKYTLAVTQAAYDGGLKTFADIAKFSDKLGGKIYGIEPGNDGNRLVQGMIDKNQFDLGKFKLVESSEAGMLSQVGRADRRSQWIVFLGWEPHPMNTRFKMQYLQGGDDVFGPNYGGATIYTNVRKGYVQECPNVGKLLTNLTFTLDMENKLMDAVLNEGKKPEDAAKAWLKDHPELLDAWLAGVTTRDGKPALAAAKVAFAK
>NZ_CP014158.1|WP_009614795.1|229804_230644_+|choline-ABC-transporter-permease-subunit
MFLTEHKIPLGEHIAAFVDWLTRHGSAVFDKISDVLEFLIHGVTGGLLWFHPLLLTAIMVGLVHFIQRSIGLTLFALASLLLILNLGYWQETMETLAQVIFATLVCVAIGVPLGILAAHKPWFYTALRPLLDLMQTVPTFVYLIPTLTLFGLGVVPGLISTVIFAIAAPIRLTCLGIQDVPAELMDAGKAFGCSRWQLLTRIELPHAMPSIGAGITQCIMLSLSMVVISALVGADGLGKPVVNALNTADISLGFEAGLAIVLLAILLDRVCKQRSLRGR

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Crispr_ID: NZ_CP014158_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014158_2

4475972-4476101

Orphan

Consensus_repeat	Method
CCCCGTAGGATGGTGTTGAGCGAAGCGATACCCATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014158_2

>merge|NZ_CP014158|2|4475972-4476101|CRISPRCasFinder
CCCCGTAGGATGGTGTTGAGCGAAGCGATACCCATCGCCATGACCGCATGGGTATCGCAAGCTCAACCCATCCTACGAAAAGCACCTCGGTGCAGCCCCGTAGGATGGGTTGAGCGAAGCGATACCCATC

>NZ_CP014158|2|2|4475972-4476101|CRISPRCasFinder
CCCCGTAGGATGGTGTTGAGCGAAGCGATACCCATC	GCCATGACCGCATGGGTATCGCAAGCTCAACCCATCCTACGAAAAGCACCTCGGTGCA
GCCCCGTAGGATGGGTTGAGCGAAGCGATACCCATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014158.1\|WP_043272164.1\|4480138_4480786_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014158.1\|WP_061562164.1\|4468912_4470004_-\|chorismate-synthase	unknown	unknown	gnl\|CDD\|235438
NZ_CP014158.1\|WP_009618627.1\|4475326_4475872_+\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|236472
NZ_CP014158.1\|WP_061562162.1\|4467078_4467705_-\|methylthioribulose-1-phosphate-dehydratase	unknown	unknown	gnl\|CDD\|236415
NZ_CP014158.1\|WP_061562166.1\|4472444_4473356_-\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236988
NZ_CP014158.1\|WP_009618632.1\|4473528_4474125_+\|cysteine-hydrolase	unknown	unknown	gnl\|CDD\|238496
NZ_CP014158.1\|WP_043314279.1\|4477848_4478451_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NZ_CP014158.1\|WP_061562169.1\|4481539_4482733_+\|benzoate/H(+)-symporter-BenE-family-transporter	unknown	unknown	gnl\|CDD\|281578
NZ_CP014158.1\|WP_009618618.1\|4477185_4477647_-\|bacteriohemerythrin	unknown	unknown	gnl\|CDD\|179132
NZ_CP014158.1\|WP_061562171.1\|4485775_4486537_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180440
NZ_CP014158.1\|WP_061562163.1\|4467701_4468853_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|372338
NZ_CP014158.1\|WP_009618612.1\|4479707_4480151_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP014158.1\|WP_043314278.1\|4478460_4479627_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP014158.1\|WP_061562168.1\|4480931_4481543_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_CP014158.1\|WP_061562167.1\|4476251_4477112_-\|calcium-channel-protein	unknown	unknown	gnl\|CDD\|377967
NZ_CP014158.1\|WP_145923990.1\|4470173_4471115_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|378820
NZ_CP014158.1\|WP_061562170.1\|4483039_4485772_+\|HAD-IC-family-P-type-ATPase	unknown	unknown	gnl\|CDD\|319775
NZ_CP014158.1\|WP_009618630.1\|4474294_4474615_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014158.1\|WP_061562165.1\|4471242_4472028_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014158.1\|WP_058072297.1\|4474673_4475231_+\|Smr/MutS-family-protein	unknown	unknown	gnl\|CDD\|225396

Protein	Function_ID	Function_description	E-value
NZ_CP014158.1\|WP_061562164.1\|4468912_4470004_-\|chorismate-synthase	gnl\|CDD\|235438	PRK05382, PRK05382, chorismate synthase; Validated.	0
NZ_CP014158.1\|WP_009618627.1\|4475326_4475872_+\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|236472	PRK09347, folE, GTP cyclohydrolase I; Provisional.	1.53556e-111
NZ_CP014158.1\|WP_061562162.1\|4467078_4467705_-\|methylthioribulose-1-phosphate-dehydratase	gnl\|CDD\|236415	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase.	1.43848e-124
NZ_CP014158.1\|WP_061562166.1\|4472444_4473356_-\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	gnl\|CDD\|236988	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase.	0
NZ_CP014158.1\|WP_009618632.1\|4473528_4474125_+\|cysteine-hydrolase	gnl\|CDD\|238496	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.	9.40853e-61
NZ_CP014158.1\|WP_061562169.1\|4481539_4482733_+\|benzoate/H(+)-symporter-BenE-family-transporter	gnl\|CDD\|281578	pfam03594, BenE, Benzoate membrane transport protein.	1.04017e-160
NZ_CP014158.1\|WP_009618618.1\|4477185_4477647_-\|bacteriohemerythrin	gnl\|CDD\|179132	PRK00808, PRK00808, bacteriohemerythrin.	1.45826e-84
NZ_CP014158.1\|WP_061562171.1\|4485775_4486537_-\|SDR-family-oxidoreductase	gnl\|CDD\|180440	PRK06172, PRK06172, SDR family oxidoreductase.	1.0584e-151
NZ_CP014158.1\|WP_061562163.1\|4467701_4468853_-\|MFS-transporter	gnl\|CDD\|372338	pfam12832, MFS_1_like, MFS_1 like family. This family contains proteins related to the MFS superfamily.	8.40471e-108
NZ_CP014158.1\|WP_009618612.1\|4479707_4480151_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.8083e-14
NZ_CP014158.1\|WP_043314278.1\|4478460_4479627_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	2.36089e-125
NZ_CP014158.1\|WP_061562168.1\|4480931_4481543_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	1.3287e-32
NZ_CP014158.1\|WP_061562167.1\|4476251_4477112_-\|calcium-channel-protein	gnl\|CDD\|377967	pfam08269, dCache_2, Cache domain. Double Cache domain 2 (dCache_2) may be a result of single Cache domain 2 (sCache_2) duplication.	5.37804e-19
NZ_CP014158.1\|WP_145923990.1\|4470173_4471115_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	4.73395e-15
NZ_CP014158.1\|WP_061562170.1\|4483039_4485772_+\|HAD-IC-family-P-type-ATPase	gnl\|CDD\|319775	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp. PCC 6803 PMA1, a putative Ca(2+)-ATPase. This subfamily includes the P-type Na(+)-ATPase of an alkaliphilic bacterium Exiguobacterium aurantiacum Mna and cyanobacterium Synechocystis sp. PCC 6803 PMA1, a cation-transporting ATPase which may translocate calcium. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP014158.1\|WP_043314279.1\|4477848_4478451_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	4.6389e-53
NZ_CP014158.1\|WP_058072297.1\|4474673_4475231_+\|Smr/MutS-family-protein	gnl\|CDD\|225396	COG2840, COG2840, Uncharacterized protein conserved in bacteria [Function unknown].	7.11915e-56

>NZ_CP014158.1|WP_009618627.1|4475326_4475872_+|GTP-cyclohydrolase-I-FolE
MSLEQNYSQILSQLGEDVTREGLLDTPKRAAKAMQYLCRGYQQTLDEIVNGALFSSDNSEMVLVKDIELYSLCEHHLLPFIGKAHVAYIPNGKVLGLSKVARIVDMYARRLQIQENMSRQIAEAVQQVTGALGVAVVIEAKHMCMMMRGVEKQNSSMVTSVMLGEFRENAATRSEFLSLIR
>NZ_CP014158.1|WP_058072297.1|4474673_4475231_+|Smr/MutS-family-protein
MQDDDFSLFANEMRGVKRIQVDQADTGKPKADRQQVRLRQQNATTKVENQRVDGLSDLFVIDVGAEDELYWARDGVQEGQMRKLKAGQIGFEGSLDLHGMNIEKARELLWDFLAEASRLEVRCVRVTHGKAARTDGRRPLLKSHVNTWLRQHPQVLGFTSALPRHGGTGSLYVMLRRTMLEGRDE
>NZ_CP014158.1|WP_009618630.1|4474294_4474615_+|hypothetical-protein
MKMSDSFDPRTLRPKRPGRWRWRFVAAVAALIAAFGVLGALAGGAALLRRQPAAGVMHIEPAAGAVLLVIGLLALWLGVLFWRLARRRARRGDGLSLSPRLMKKRG
>NZ_CP014158.1|WP_009618632.1|4473528_4474125_+|cysteine-hydrolase
MSQPLSMLKISGRGYPPATLRQSTLLIIDAQEEYRSGVLALPGLEPAVAQIRQLLDAARSQGTPIVHVRHLGIHGGLLDPQGPRGQFLPELAPLPGEVVVEKRLPNAFSGTELHDRLQHNGRLDIIVCGFMTHSSISTTVRAAKDYGYRCTLVTAACATRDIPTPDGGVLSARDLHHAEMAALGDNFAAVVGEAQALI
>NZ_CP014158.1|WP_061562166.1|4472444_4473356_-|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase
MTESRLLTLRDHIRWAVSRFHAEGLYFGHGTDNAWDDARLLVLGALHLPWEMADAYLDCRLEDDEREHLRELLRRRIEERVPTAYLLGEAWFCGLPFVVDERVLVPRSPIAELIQQRFEPWLAAEPARILDLCTGSGCIGIACAYEFLQAEVVLADLSFEALEVANVNIERHELGERVYTVQGDGFAGLPGQRFDLIVSNPPYVDAEDFADMPAEYRHEPELGLACGHDGLNLVRRMLAEAADHLTEQGTLIVEVGNSQVHVEALYPEVDFTWLEFRHGGHGVFLLSAAQCREHQALFRSRVN
>NZ_CP014158.1|WP_061562165.1|4471242_4472028_+|hypothetical-protein
MTDADPRSDAAAPAETPAPPHPWAELAPEHFRLLRLAPLPTDRSTGARALRFVQLGRVERHAPEQSLLRLSIQLPGQALRKEQNLFEVWADHRNKEVRFGADSGFALEPINRGLGRFLLAQGIAWARQKWAHYKVEGGVLGVKDAPNEDIRLRRDHFLRAQGFDVEYEDSRLLKARYDAGRVSELYDDWNKDKVQLLPLLDAAAMLEQADQNLASQDNEIRKLQQRIETFRRDDTSLRFIIACLTVFAVFQAGLLIWMATH
>NZ_CP014158.1|WP_145923990.1|4470173_4471115_+|alpha/beta-fold-hydrolase
MTYAASPTILQRPYDLDTGHGVLRGTLLLPQTASPPPLALLVAGSGPTDRDGNNPEGGNNAYLRRLAEALASNGIASLRYDKRGIARSRDAAPDERQLSVDGYVDDLVAWSDRLAADPRFGPQVLVGHSEGALIASLAAPRSKAAALVLIAGSGRPIDKVLREQLSVRLPPPLLEKADAILDRLRGGHQVPEVPAQLNALFRPSVQPYLISLFRHDPARALARVRQPTLILQGTSDIQVDVADAQALQRARPDAELQLISGMNHILRIVPADVKKQLASYNDPGLPLARDLVQRLVGFILRTRPQTPSAEGMS
>NZ_CP014158.1|WP_061562164.1|4468912_4470004_-|chorismate-synthase
MSGNTYGKLFTVTTAGESHGPALVAIVDGCPPGLELSLEDLQRDLDRRKPGTSRHTTQRQEADEVEILSGVFEGKTTGTPIGLLIRNTDQKSKDYSAIKDLFRPAHADYSYHHKYGVRDYRGGGRSSARETAMRVAAGAIAKKYLASLGIRVRGYMSQLGPIEIHFKTWDSVEQNAFFSPDPDKVAELEAYMDQLRRDQDSVGAKITVVAEGVPPGLGEPIFDRLDAELAHALMSINAVKGVEIGAGFASVAQRGTEHRDELRPEGFLSNNAGGILGGISSGQPIVAHLALKPTSSITTPGRSIDVNGNPVDVVTKGRHDPCVGIRATPIAEAMMAIVLMDHLLRHRAQNADVRVNTPVLGQL
>NZ_CP014158.1|WP_061562163.1|4467701_4468853_-|MFS-transporter
MAASFPYWRLSSFYFFYFCLLGGTAPFLALYFHHLGFSAARIGELVAIPMLMRCVAPNLWGWLGDRSGQRLRIVRFGALCTAACFALIFLDHSYAWLALVMAGHAFFWHAVLPQFEVITLAHLGERTASYSRIRLWGSIGFICTVVGLGRLFEAASLDYYPWALLAIMLGIVAASWWVPNAQPAWRHGDAPASGFLAQLRQPGVIAFYLCVCLMQLSHGPYYTFLTLHLEALGYSRGLIGWLWALGVVAEVLLFLAMPRLLGRFSLRQVLAASFLLAALRWLLLGSLADHLGLLLFAQLLHAATFGAFHAAAIHFVQRSFQARQQGQGQALYAALAGTGGALGALYSGYSWASLGPAWTFAIASLAALAAAVIIRTRLKEERP
>NZ_CP014158.1|WP_061562162.1|4467078_4467705_-|methylthioribulose-1-phosphate-dehydratase
MSNNREHLTRQIIEAGRFLYGRGWSPATSSNYSARLAADRALLTVSGKHKGLLGVDDVLETDLAGNSLEAGKKPSAETLLHTQLYAWRAEIGAVLHTHSVNATVLSRLTPADRLELEDYELQKAFAGVTTHEGRVTVPIFDNDQDIARLAGKVQPWLDAHPDCPGYLIRGHGLYTWGPRMEDALRQVEAFEFLFECELKVISLRGGTR
>NZ_CP014158.1|WP_061562167.1|4476251_4477112_-|calcium-channel-protein
MKRLFSALLFCLACLAPLHLPAATSTAADAAQAQRARQLLEKAVGYYRQEDDKAFAAFSRQGEFIDNELYVYVVDSKGVMLASGGPSVVLIGRDVSQLLDPNMRKQFAKALKAPENGKVQETEYRWKNWADGRVERKHTYYQRIGDRFLAVGYYIPRADARQAEAMLDKAAKAVEGAPEATFKRINDLDKAFIEDDLYAFVVDMDTGKFVAHGYNTRMVGTDFASLKDPAGNAIGQAMLALAKSKGEGQFDYQWRNPVTGKVENKHALLRKSGHYLVAVGYYTAGG
>NZ_CP014158.1|WP_009618618.1|4477185_4477647_-|bacteriohemerythrin
MAYLVWQDDLNTGIQVIDNQHKRIVEMINQLHEAQGTLDKARVGEVIEELVDYTQSHFAFEETLLEDSGYQFTRAHKKVHELFIKRVSDYRLRFAAGEDVAEELKGLLGRWLFTHIRNDDANYVESVKASMHELTHDQSHGGWLSRSMKRFFG
>NZ_CP014158.1|WP_043314279.1|4477848_4478451_-|glutathione-S-transferase-family-protein
MYTVYGDRLSGNCYKVKLVLHLLGLPYQWQDVDILKGETQTPEFLAKNPNGKVPVLELEDGSCLWESNAILNFLADGSELLPKEPRLRTQVLQWQFFEQYSHEPYVAVARFIQFYLKMPDERRAEYEDCLKGGYKALDVMEQQLARTPYLVGDSYSIADITLYAYTHVAHQGGFDLSGYPAINAWMARVAAHPRHVDMLD
>NZ_CP014158.1|WP_043314278.1|4478460_4479627_-|PLP-dependent-aminotransferase-family-protein
MAFSERIARLKSSLIREILAAAQRPEVMSFAGGLPAEPMLPKVEWADMPASMGQYGMSEGEPALREAIAAEARALGVPCDASQVLIVSGSQQTLDLASKLFIDPGTEVLLEAPTYLAALQAFQLFGADCVTVPLGAEGPDVAALRQRLERHKPAFAYLIPTFQNPSGVRYSEERRDEVAALLDEFGVTLIEDEPYRELVFDAGSATPLVSRLKKASWIYTGTVSKTLLPGLRVGFLIATPDLFPHLLRLKQSADLHTNRIGQWQALQWFGTEAYRGHLAELRDFYRIRRDAMQAQLEEHFADLAEWNVPQGGLFFWLTLKQPLDTRGLLDKALQQNVAFMPGEPFFTDPDANPGHLRLNFSHVAPERLGEGLRRLAAVIREAQAAQPA
>NZ_CP014158.1|WP_009618612.1|4479707_4480151_+|MarR-family-transcriptional-regulator
MPDLLPSDTWSEAMQAFYFSYRAFTAKPDEILARRGLGRVHHRILFFVARQSGLSVKELLATLGVSKQALNMPLRQLQEMQLIRSEASPADKRKRLLSLTAEGAKLERALRNEQARLLQRAFAEAGEEAVHGWLAVNQALAQPLQET
>NZ_CP014158.1|WP_043272164.1|4480138_4480786_-|hypothetical-protein
MDHNPYAAPKVELIEARTPASLAGGRWSPGHLRLLAWLSLALLLAQSVLFGLSFLGGSGRGDALDSYSLWLGVLCTLLGCYLSWRATQFLVERFGARGMAWPLWLSIGLALVIQAYAVIFDAQLDGTPNAALAGFMALFLPSGLVGLWYGVRVLKIGLPYPSVKVLGWLDVLSGVCMASILLFIPGTVLAAAALLPLALMFLRGARELEGGAQVS
>NZ_CP014158.1|WP_061562168.1|4480931_4481543_+|LysE-family-translocator
MPLELLAAFIGFAFVTSITPGPNNMMLLASGVNFGVRRTVPHMLGISIGFLLLVVAVGLGLDQLFHAFPFTYQALRYLGAAYLLYLAWGIARAGAPQANGRGSGKPFSFLQAAAFQWVNPKAWIMAIGAITTYTPQQGFAGNVLLIAVLFAVVNLPSVGVWTVLGSCLRHWLEQPARRRVFNIGMALLLVASLYPLFVDIAPA
>NZ_CP014158.1|WP_061562169.1|4481539_4482733_+|benzoate/H(+)-symporter-BenE-family-transporter
MTDSTSARLRPFADSSPAAVVAGFVAMLTGYTSSLVLMFQAGQAAGLSNAQISSWIWALSIGMALTTIGLTLRYRTPIVIAWSTPGAALLISSLPGVPYSEAIGAFIVCAALITLCGVTGSFDRLMRQVPGSLASALLAGVLFRICIEICRAAEQQTLLVAAMFLSYLLAKRLSPRYAVFVALLVGVALAGALGLLNFSHFQLELAKPVWTTPSFSLAATISIGIPLFIVAMASQNMPGLAVLRADGYQVPASPLISTTGIASLLLAPFGSHGINLAAISAAICTGPEAHENPHKRYTAALWCGVFYGVAGIFGATLAALFAALPKALVLSIAALALLGSITNGLSNAMAEARQREAAMVTFLVTASGFTLFSVGSAFWGLVAGLVTQLVLNWRRAI
>NZ_CP014158.1|WP_061562170.1|4483039_4485772_+|HAD-IC-family-P-type-ATPase
MSRRRASHSDASATPWHSLAGDEVQARLRSGPGGLDEAEVQSRRQQYGENRLAPPRRRGPLLRLLLQFHNILLYVMLAAALVTALLGHWVDTAVLLGAVLINAVIGFIQEGKAESALDAIRGMLSSTATVVRQGKRQQIDAAALVPGDLVLLASGDRVPADLRLLGGKELRVDEAALTGESLPVEKSAQAVAADAPLGDRYGMAYSGTLVVYGQARGLVVGTGADTELGRINQMLSSVENLTTPLLRQIDRFGRILAMVILGIGALVFLLGTLWLGETPEQMFMMVVALVASAIPEGLPAIMTVTLALGVQRMARQRAIVRRLPAVETLGSVTVICSDKTGTLTCNEMTVQRLVCAERVYEVEGVGYVPEGGFSVDGRAVQPDAQPALLQAIRAGVLCNDAQLREDGGQWSIEGDPTEGALLVLGAKAGLPQEACARDWPRLDSIPFESQHRFMASSHQDAEGRPWILVKGAPERILEMCSTQLTDAGAAPLDPDYWRRMATDTAARGLRLLALAARQAAPQGAQLGFEDVAGGFTLLALVGLIDPPRAEAIAAVAHCQQAGIRIKMITGDHAETARAIGARLGIGVGRPAVTGAEVALMDDAELRRVALEVDVFARASPEHKLRLVQALQEDGQVVAMTGDGVNDAPALKRAEVGVAMGRKGTEAAREAADVVLADDNFASIASAVREGRAVYDNLKKFILFMLPTNGGEALVVIAALFLGLGLPLTPAQVLWINMVTSSTLGLALAFEPAEHDIMRRRPRPPGNALLSGFFVWRVLMVALLMMLGAFGLFLWELQRGTGIESARTMAVNAVVIGEMFYLINSRSIFGSVLNREGLFGNRWVLLAIAACIPLQLAFTYAPWMQDIFGSRGLSPAEWLRALGAGLLVFLGAELEKWVIRRSGLAQRLARH
>NZ_CP014158.1|WP_061562171.1|4485775_4486537_-|SDR-family-oxidoreductase
MSQLLSGQVALVTGAAAGIGRATAQAFAHEGIKVVVSDVDAAGGEATVELIRAAGGDARFIRCDVTRDAEVQALVAATVEAYGRLDYAFNNAGIEIEQGRLAEGKESEFDAIMGVNVKGVWLCMKHQIPVMLAQGGGAIVNTASVAGLGAAPKMSIYAASKHAVIGLTKSAAVEYAKKKVRINAVCPAVIDTDMFRRAYEADPKKAEFAAAMHPVGRVGQVEEIAAAVLYLCSDNAGFTTGIALPVDGGHTAL

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Crispr_ID: NZ_CP014158_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014158_3

4656448-4656563

Orphan

Consensus_repeat	Method
TGAGGGAACCAGGCCACCGGTAACTTCAGCGCCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014158_3

>merge|NZ_CP014158|3|4656448-4656563|CRISPRCasFinder
TGAGGGAACCAGGCCACCGGTAACTTCAGCGCCCCACCTTCTGCCGCACAAGTCCCCTCTCCCTCTGGGAGAGGGCTAGGGTGAGGGAACCAGGCCACCGGTAACTTCGGCGCCCC

>NZ_CP014158|3|3|4656448-4656563|CRISPRCasFinder
TGAGGGAACCAGGCCACCGGTAACTTCAGCGCCCC	ACCTTCTGCCGCACAAGTCCCCTCTCCCTCTGGGAGAGGGCTAGGG
TGAGGGAACCAGGCCACCGGTAACTTCGGCGCCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014158.1\|WP_061562267.1\|4646222_4647218_-\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|237364
NZ_CP014158.1\|WP_145923926.1\|4645607_4646126_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014158.1\|WP_024128603.1\|4659527_4660526_+\|sulfate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224529
NZ_CP014158.1\|WP_061562270.1\|4653624_4654902_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|225254
NZ_CP014158.1\|WP_070065536.1\|4667048_4668221_+\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|372999
NZ_CP014158.1\|WP_058490360.1\|4665373_4666762_+\|adenylate-cyclase	unknown	unknown	gnl\|CDD\|143636
NZ_CP014158.1\|WP_061562268.1\|4648745_4649660_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP014158.1\|WP_058490350.1\|4647399_4648053_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|312013
NZ_CP014158.1\|WP_043270682.1\|4664664_4665243_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|226791
NZ_CP014158.1\|WP_043270666.1\|4651656_4652439_+\|hydroxypyruvate-isomerase	unknown	unknown	gnl\|CDD\|163190
NZ_CP014158.1\|WP_043270670.1\|4654898_4656329_+\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|180487
NZ_CP014158.1\|WP_061562273.1\|4662136_4663501_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP014158.1\|WP_043270686.1\|4668598_4669891_-\|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl\|CDD\|234968
NZ_CP014158.1\|WP_043270674.1\|4658159_4659407_+\|serine/threonine-transporter-SstT	unknown	unknown	gnl\|CDD\|184190
NZ_CP014158.1\|WP_061562269.1\|4649769_4651545_+\|glyoxylate-carboligase	unknown	unknown	gnl\|CDD\|183066
NZ_CP014158.1\|WP_043270680.1\|4663697_4664501_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP014158.1\|WP_061562272.1\|4661018_4662119_-\|P1-family-peptidase	unknown	unknown	gnl\|CDD\|239071
NZ_CP014158.1\|WP_009616974.1\|4652512_4653403_+\|2-hydroxy-3-oxopropionate-reductase	unknown	unknown	gnl\|CDD\|185019
NZ_CP014158.1\|WP_061562271.1\|4657049_4657940_+\|urea-transporter	unknown	unknown	gnl\|CDD\|377010
NZ_CP014158.1\|WP_009616982.1\|4648128_4648560_-\|heme-binding-protein	unknown	unknown	gnl\|CDD\|225734

Protein	Function_ID	Function_description	E-value
NZ_CP014158.1\|WP_061562267.1\|4646222_4647218_-\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|237364	PRK13361, PRK13361, GTP 3',8-cyclase MoaA.	0
NZ_CP014158.1\|WP_043270682.1\|4664664_4665243_+\|HD-domain-containing-protein	gnl\|CDD\|226791	COG4341, COG4341, Predicted HD phosphohydrolase [General function prediction only].	9.82172e-24
NZ_CP014158.1\|WP_024128603.1\|4659527_4660526_+\|sulfate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224529	COG1613, Sbp, ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism].	0
NZ_CP014158.1\|WP_061562270.1\|4653624_4654902_+\|glycerate-kinase	gnl\|CDD\|225254	COG2379, GckA, Putative glycerate kinase [Carbohydrate transport and metabolism].	0
NZ_CP014158.1\|WP_070065536.1\|4667048_4668221_+\|IS4-family-transposase	gnl\|CDD\|372999	pfam14294, DUF4372, Domain of unknown function (DUF4372). This domain family is found in bacteria, and is approximately 80 amino acids in length. The family is found in association with pfam01609. There is a single completely conserved residue G that may be functionally important.	1.68859e-23
NZ_CP014158.1\|WP_058490360.1\|4665373_4666762_+\|adenylate-cyclase	gnl\|CDD\|143636	cd07302, CHD, cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.	4.39328e-64
NZ_CP014158.1\|WP_061562268.1\|4648745_4649660_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.59927e-87
NZ_CP014158.1\|WP_058490350.1\|4647399_4648053_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|312013	pfam08362, TetR_C_3, YcdC-like protein, C-terminal region. This family comprises proteins that belong to the TetR family of transcriptional regulators. They bear particular similarity to YcdC, a putative HTH-containing protein. This family features the C-terminal region of these sequences, which does not include the helix-turn-helix.	7.14497e-78
NZ_CP014158.1\|WP_043270666.1\|4651656_4652439_+\|hydroxypyruvate-isomerase	gnl\|CDD\|163190	TIGR03234, OH-pyruv-isom, hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.	2.15044e-160
NZ_CP014158.1\|WP_043270670.1\|4654898_4656329_+\|pyruvate-kinase	gnl\|CDD\|180487	PRK06247, PRK06247, pyruvate kinase; Provisional.	0
NZ_CP014158.1\|WP_061562273.1\|4662136_4663501_-\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	2.81951e-37
NZ_CP014158.1\|WP_043270686.1\|4668598_4669891_-\|dicarboxylate/amino-acid:cation-symporter	gnl\|CDD\|234968	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed.	0
NZ_CP014158.1\|WP_043270674.1\|4658159_4659407_+\|serine/threonine-transporter-SstT	gnl\|CDD\|184190	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional.	0
NZ_CP014158.1\|WP_061562269.1\|4649769_4651545_+\|glyoxylate-carboligase	gnl\|CDD\|183066	PRK11269, PRK11269, glyoxylate carboligase; Provisional.	0
NZ_CP014158.1\|WP_043270680.1\|4663697_4664501_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	3.54468e-17
NZ_CP014158.1\|WP_061562272.1\|4661018_4662119_-\|P1-family-peptidase	gnl\|CDD\|239071	cd02253, DmpA, L-Aminopeptidase D-amidase/D-esterase (DmpA) family; DmpA catalyzes the release of N-terminal D and L amino acids from peptide susbtrates. DmpA is synthesized as a single polypeptide precursor, which is autocatalytically cleaved to the active heterodimeric form. The cleavage results in two polypeptide chains, with one chain containing an N-terminal nucleophile. This group represents one of the rare aminopeptidases that are not metalloenzymes. DmpA shows similarity in catalytic mechanism to N-terminal nucleophile (Ntn) hydrolases, which are enzymes that catalyze the cleavage of amide bonds through the nucleophilic attack of the side chain of an N-terminal serine, threonine, or cysteine.	3.73083e-165
NZ_CP014158.1\|WP_009616974.1\|4652512_4653403_+\|2-hydroxy-3-oxopropionate-reductase	gnl\|CDD\|185019	PRK15059, PRK15059, 2-hydroxy-3-oxopropionate reductase.	1.55441e-127
NZ_CP014158.1\|WP_061562271.1\|4657049_4657940_+\|urea-transporter	gnl\|CDD\|377010	pfam03253, UT, Urea transporter. Members of this family transport urea across membranes. The family includes a bacterial homolog.	4.76455e-43
NZ_CP014158.1\|WP_009616982.1\|4648128_4648560_-\|heme-binding-protein	gnl\|CDD\|225734	COG3193, GlcG, Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only].	2.8587e-35

>NZ_CP014158.1|WP_043270670.1|4654898_4656329_+|pyruvate-kinase
MNSDKKVKILATLGPAIKGREDIRALVDAGANLFRLNFSHGEYADHSQRYQWVREVEAELGTPIGILMDLQGPKLRVGRFENGAVMLHKGQSFTLDLMDAAGDERRVTLPHPEIIQALEPGMSLLLDDGRIRLQVLNNHGDAIETRVLNSGELSDRKGVNVPEAVLKLSPLTAKDRRDLAFGLELGVDWVALSFVQRPEDIEEARALIGDKAFIMAKIEKPSAVQCIEEIARLADAIMVARGDLGVEVPAQNVPGIQKRIIQVCRQLGRPVVVATQMLESMRFSPAPTRAEVTDVATAVSEGADCVMLSAETASGQYPVEAVEMMAKIIRQVEAEPDYQGQLELNRPEPDATVSDAISCAIRRISRILPVAVLVNYTESGSSTLRASRERPKAPILSLTPNLKAARRLSVAWGVYSVVNEQLAHVDEICATALEIALAQRMAQRGDTVVVTAGLPFGQPGSTNMLRIETVAPALSA
>NZ_CP014158.1|WP_061562270.1|4653624_4654902_+|glycerate-kinase
MSLDPRALLRELFDTAIAAAHPAQTLARHLPRVHGGRTIVIGAGKAAGAMAEVVEAHWKDEQVDGLVVAPYGYGANCQRIEVVEAAHPVPDDAGERVARRVLELVSDLSEDDRVIFLLSGGGSALLALPAEGISLDDKRALNKALLKSGAAIDEMNCVRKHLSAIKGGRLARACWPASVYTYAISDVPGDEATVIASGPTVGDPTTSADALAILKRYAIDTPAHIRAWLEDPRSETVKPGADCLSRSYFTLIATPQQALDAAAAKARAAGLEVLILGDLEGESRDVAKVHAGIARQVRKHGQPLAAPCLVLSGGETTVTVRGKGRGGRNAEFLLSLTAALKGEPGIWALAGDTDGIDGMENNAGALMSPCSYQRALAAGLNPLYELDDNNGYGFFAELDDLVVTGPTRTNVNDFRAILILESDEQ
>NZ_CP014158.1|WP_009616974.1|4652512_4653403_+|2-hydroxy-3-oxopropionate-reductase
MAKIGFIGTGIMGLPMAQNLQKAGHQLFLSSHHDKAPAALVEAGAVALANPKEVAQEAEFIIVMVPDTPQVEDVLFRQDGIAEGVGPNKVVIDMSSISPTATKAFAEKIKATGAQYLDAPVSGGEVGAKAGSLSIMVGGCPNTFERALPLFQAMGKNITRVGGNGDGQTAKVANQIIVALNIQAVAEALLFAARNGADPAKVREALMGGFASSRILEVHGERMVKGTFDPGFRISLHQKDLNLALAGARELGLNLPNTANAQQVFSTCAALGGSNWDHSGLIKGLEHMANFSIRKD
>NZ_CP014158.1|WP_043270666.1|4651656_4652439_+|hydroxypyruvate-isomerase
MPRFCANLSMLFTEVDFLDRFEAAAKAGFSGVEYLFPYDFEAEVIKARLDANGLEQVLFNLPAGDWGKGERGIACHPDRVEEFRAGVDKAIAYAKVLGNKQVNCLAGIRPQGYDCATIENTFLNNLEYAAEKLEAAGIKLVMEMINTIDIPGFYLQTTQQALDVREKVGSPNLFLQYDIYHMQIMEGDLARTMEKNLAAINHIQLADNPGRHEPGTGEINYRFLFGHLDRIGYQGWIGCEYKPATTTEAGLGWLKSHNAV
>NZ_CP014158.1|WP_061562269.1|4649769_4651545_+|glyoxylate-carboligase
MAKMRAIEAAVLVMRREGVDTAFGVPGAAINPMYAAMKKLGGIDHVLARHVEGASHMAEGYTRTSAGNIGVCIGTSGPAGTDMVTGLYSASADSIPILCITGQAPRARLHKEDFQAVDITSIVKPVTKWATTVLEPGQVPYAFQKAFFEMRSGRPGPVLIDLPFDVQMAEIEFDIDAYEPLPVHRPSATRAQAEKALALLNDAERPLLVAGGGIINADASARLVEFAELLGVPVIPTLMGWGTIPDDHPLMAGMCGLQTSHRYGNATLLESDLVFGIGNRWANRHTGSVDVYTAGRKFIHVDIEPTQIGRVFTPDLGIVSDAGAALDAFLEVARQWKAAGKLKDRSAWAEACRERKRTLQRKTHFDNVPVKPQRVYEEMNEFFGKDTCYVSTIGLSQIAGAQFLHVYKPRHWINCGQAGPLGWTIPAALGVVKADPSRQVVALSGDYDFQFMIEELAAGAQFNLPYIHVLVNNSYLGLIRQAQRGFEIDYCVQLAFDNVNAPELNGYGVDHVAVVEGLGCKAIRVFDPNQIGAAFAQARELMQQHRVPVVVEVILERVTNIAMGTEINAINEFEELAQSRDDAPTAISLLD
>NZ_CP014158.1|WP_061562268.1|4648745_4649660_-|LysR-family-transcriptional-regulator
MDRYILIRSFVLVADNGSFASAALSEGVTPVVMGRRLDALEQHLGVKLMHRSTRGLQLTDLGEQYLERARSLLKDFDEADASVARGGNSVRGHLVVSAPAAFGRRHIAPHAPAFLERFPDLKLSFNFTDSLVDLVRQGYDMGIRIGEVTDPNYVAVKLFPNRRVVCGAPSYFELHGVPRTLEDLARHNCLAFNLQGGQQRGWTFLRDGRQVAVRVSGNLDCNDGELLYDWVKQGLGIGWRSTWEIQAELKAGELVTVLDEYEIPAYDIQAVYPQQRYLPAKVRFFIDYLKALYNTPGYWETRHP
>NZ_CP014158.1|WP_009616982.1|4648128_4648560_-|heme-binding-protein
MSEINLDTALAITHGALAAGRELSTAPLTVAVLDAGGHLVALQREDGASLLRPQVAIGKAWGAVALGKSSRALAADAQQRPSFIAAVNTLAQGNVVPAPGGVLIRDTSNRVIGAIGISGDASDIDEQCAIRGIQAAGLVADAG
>NZ_CP014158.1|WP_058490350.1|4647399_4648053_+|TetR/AcrR-family-transcriptional-regulator
MTSIRERNRRLILRAASEEFAEKGFAATKTSDIAARAGLPKPNVYYYFQSKENLYRCVLESVVEPLLQASAPFREDDEPAEALKAYIRSKVRISQELPHASKVFASELMHGAPHLPREYLDELNAQAQRNIACLQSWIDRGLLAPVDPHHLLFTIWAATQTYADFDWQISMVTGKDSLSDADFEAAAETITRLVLRGTAPDAGEPAKASGRMRPLPL
>NZ_CP014158.1|WP_061562267.1|4646222_4647218_-|GTP-3',8-cyclase-MoaA
MSDSQLVDPFGRRITYLRLSVTDRCDFRCTYCMSEDMQFLPRDQVLSLEELYAVADAFIALGVRRIRITGGEPLVRKGLSSLLARLGARPELEDLAITSNGSQLAGRAAELRAAGVRRLNISLDSLRRERFAAFTRSDRLPQVLAGIESARAAGFERIKLNCVVQKGRNDDEVCELVEYALARGLDISFIEEMPLGSISSHDRAQTLCSSDEVRARLAEHWQLTPSLERSGGPSRYYRVDGLPSRIGFISPHSHNFCGDCNRVRVTAEGKLVLCLGHEGALDLRQLLRSHPGDGARLRAALVEALQLKPQRHHFDAAGQVQVLRFMNMTGG
>NZ_CP014158.1|WP_145923926.1|4645607_4646126_-|hypothetical-protein
MSESRLRIPLGDCCLVCEGFRQRVAGRPSLEVDGDLLWALEHSSWQPLAVTLEPLADGARVRPLPLERQAAFDAQRALDWRDDEVRIACLPEVRDPRALLDWCRARWPGADCGAQALDAQAYAWGRLLRLDCRRAGLAVAGHEHFLLPHAYPCVYLGHLALDWRRLRFEPNA
>NZ_CP014158.1|WP_061562271.1|4657049_4657940_+|urea-transporter
MRPLPLLTLWLRGFSQVFLQPSPLFGLLCLALIGACAPGLLPGAVIGATAGPAFAHLLRCRQGDTDTGLYGYNAVLIGLLLPLKFAWSPMLVALALFASLASVLLQRLLLRASRQRHGLPPYTLAFVLLGWTLPALGTLLSLPAAAPIAGLIELPLPTLLEATSRAFGQVIFLDTPLAGALIFLGLLLGAPRAATWALFGAVMVLPVAVFAGIPQGDVHSGLLGMNSALAALALALRGPGPFAPLAGAVLALILQQAMVALGIPFMTAPFIFACLLVLLSERLLRPASRRAPLAGS
>NZ_CP014158.1|WP_043270674.1|4658159_4659407_+|serine/threonine-transporter-SstT
MTLPSPTLFQRIQRSSLVMRIFVGMLAGIALALVAPDAALAVGLLGKLFIAALKAVAPVLVLVLVCASIANHKAGQRTHIRPILALYLLGTFAAAVVAVAASFAFPSTLVLDAPASGNAPPGGIGDVLNGLLFSVASNPVKALLEANFIGILAWAVGLGLALRHARQSTRDLLDDLAGGVTLIVRVVIAFAPLGIFGLVASTFAESGLDALLGYLQLLAVLLGCMLFVALVVNPAIVFWKLRRNPYPLVFTCLRESGVTAFFTRSSAANIPVNLQLCERLGLHEDTYSVSIPLGATINMAGAAVTISVLSLAAAHTLGIAIDLPSALLLCVVSAVCACGASGVAGGSLLMIPLACGLFGISGEVAMQVVAVGFVISILQDSAETALNSSTDVIFTAAACLAEEPAAAEAGLGEKR
>NZ_CP014158.1|WP_024128603.1|4659527_4660526_+|sulfate-ABC-transporter-substrate-binding-protein
MKRLFAASLLAAGMALAGAAQAAPPLLNVSYDVMRDFYKEYNPAFQKHWEAEKGEKITIQMSHGGSSKQARSVIDGLPADVITMNQATDIDALADNGGLVPKDWATRLPNNSAPFTSATVFIVRKGNPKGLHDWPDLLKDGVQVVVPNPKTSGNGRYTYLSAWGYSLKHGGDEAKAKEFVGQLFKHVPVLDTGGRAATTTFMQNQIGDVLVTFENEAEMIAREFGRGGFEVVYPSVSAEAEPPVAVVDKVVEKKGTREQAEAYLKYLWSDEGQTIAADNYLRPRNPAILAKYADRFPKVDFFSVEKTFGDWRTVQKTHFADGGVFDQIYSGN
>NZ_CP014158.1|WP_061562272.1|4661018_4662119_-|P1-family-peptidase
MRARQLGITLGLGTPGAFNAITDVPGVRVGHSTLIAERDGKQVCTGVTIVQPRAGEARLQPCFAGVHVLNGNGDATGLEWIREAGLLTTPIAITNTHSVGVVRDALVAAERDALGDPAVYWCMPVVMETYDGLLNDIWGQHVGPEQVRQALAGAESGPVTEGPVGGGTGMICHEFKGGIGSASRKLPAEQGGWTVGVLVQANHGQRRELRVDGYPVGRVLGDIPSPFAEKGEPGMGSIVVIIATDAPLLPHQCQRLAQRASIGIARTGGGTEDSSGDIFLAFATGNRDLPPADYGRKGLPQSTPLQMLNNEHISPLFAAAAEAVEEAIVNAILAGREMSSADGTLVPALGGERLLEALREVGWRPR
>NZ_CP014158.1|WP_061562273.1|4662136_4663501_-|APC-family-permease
MSSPAAPDGALKPSLGVFDVVAITVSAVTPASSVFVIAPFAIQQAGSGAFLAFVMAAALALMFAWCYAELGRAHSSAGGEYVYAKRVFGGMAGYATFLAVLVSLLFIPPVLATGAATYLNGALGTQFDTQTVALVIVAASYVLGILNIRVNAWVTGVFLLCEVAALLVIVVLGFGHASQPLSVLLQPQTLSGGALAAAPWALVIGAVGTAVFSYNGFGGAVLLAEDMKDGGRSVHRAVLWSLVLVVVIELVPLTALLIGAPSLKDMLASPDPIGYLLTAHGNATLSRLVSAGIFLSVFNAIVAIVIQVGRVIFSSGRDALWTPTLNRAFTRIHPRWESPWLATLFLGVPSAALSFSSNLEELTSFTVLLLVLIYLVVALCALFSRVLRRDREHPYRMPLWPLPALLAVVGAGYLLLNLLLEASARDVMTIIGILAVSVILYGTYGKLSPAFQKL
>NZ_CP014158.1|WP_043270680.1|4663697_4664501_+|helix-turn-helix-transcriptional-regulator
MHNLFREVGMHANLGRAIEQIGQPRFWKQLILLLHQWLPFDNALAAFYPANATPVALEEYDADPQAVSAAMPAYLSGLYQLDPFYQACREGLPSGLYRLEEVAPDQFRQSEYFLNYFHDNVLEDEVQFILQLPGQGALSLSLGMRKPFDAAQCGLLAMLCPWVLALMQQHWQQRSQRLLPANPEGVATQVRDALSHFGAGVLSERELEIARLILRGYSSKAMAERLAISPETIKVHRRHLYAKLDISSQPELFSLFLQSLGHDPENP
>NZ_CP014158.1|WP_043270682.1|4664664_4665243_+|HD-domain-containing-protein
MNARAKFTHMEDGSVEDWSIIAQDFAAYATQLPDRILAHLRLLDGDFGGFPVDRLSHSLQTATLAHRDGRDEEYVVCALLHDIGDTLGSYNHADIAAAILKPFVSPENHWMIEKHAIFQGYYFFHHLGLDRHLREQFKDHPQFEQTIEFCARYDAAAFDPEGETLPLEFFEPMLRRVFAKPRQSIYMARDAD
>NZ_CP014158.1|WP_058490360.1|4665373_4666762_+|adenylate-cyclase
MKPNRSETPSRPGAAPLREYHSRVLAYLAVAATVSAGTFSQYFGYDALWMVPYALLYPHLAQNLSRRYKHSHPQQTRLVLQALDALHTGAGAALLGFSAVPALMLVLILAFSSLVVGGLRTLGLALLMALSAAVLTGALAGPGFKGNAPLLVNLVSVLFCAFYICVTAYFTHQQGLRLAQVRGEIAREQEKAARLAHNLAKYLSPQVWESIFSGKRSVRLETQRKKLTVFFSDIKGFTELSEELEAETLTDMLNNYLNEMSKIALKYGGTIDKFVGDCVMVFFGDPATQGAKKDAVAAVSMAVAMRKHMKVMRQQWRAQGITKPLEVRMGINTGYCTVGNFGAETRMDYTIIGREVNLASRLESAAEAGEILLSHETYSLVKDVIMCRDKGQISVKGFSKPVQIYQAVDFRRDLGANPSFIEHELPGFSMYLDTNNVQNFDKDRVIQALQQAVEKLKDKIIL
>NZ_CP014158.1|WP_070065536.1|4667048_4668221_+|IS4-family-transposase
MFRISRFHDVLKALPRGVFDRLVAEHGADKHSKRFGSWDHLVAMVYAQLAGVSSLRALETSFNSHPHQHYHLGTGPIRRSTLADANERRNTEVFAQVAHYLMAGVCRQLRRDGKELLYLLDSTTNTLKGPGFDEWTLSNRTRSQGLKVHVLYAEQAAAPVHCSFSAANVNDIDEGRTLGIEPQATYVFDKGYYDFNWWASLDAQKARFVTRFKSNVQLKVLAQREVPQQDRETILRDEEVSFSNRNPGGRRRNHYTQPLRRILVNRPGDEPPLSLATNDLSSPAAEIAERYRDRWRIELFFKWIKQHLKVRRFLGRSENAVRIQILCALISYLLLNLYQRRTGTRQSLWMLMVEVQATLFQRPGLEAERYRRRQERIREINLRQGQLLIA
>NZ_CP014158.1|WP_043270686.1|4668598_4669891_-|dicarboxylate/amino-acid:cation-symporter
MTKQPFYKSLYVQVLIAIAIGIALGHYYPQTAVLMKPLGDGFVKLIKMAIAPIIFCTVVTGIAGMQSMKAVGKTGGMALLYFEIVSTIALIIGLVVVNVVQPGAGMHVDPASLDTSKIAAYAAAGAKQSTVDFLMNIIPNTVVGAFANGDILQVLFFSVLFGYALHRLGSYGQPIFQFIERFTQVMFNIINVIMKVAPIGAFGAMAFTIGAYGVGSLVQLGQLMACFYITCLLFVLIVLGGIARAHGFNILKFIKYIREELLIVLGTSSSESALPRMIAKMEKLGCDKSVVGLVIPTGYSFNLDGTSIYLTMAAVFIAQATDTPMDITHQLTLLLVLLIASKGAAGVTGSGFIVLAATLSAVGHLPVAGLALILGIDRFMSEARALTNLVGNGVATVVVAKWCKQLDSAQLDRELAAGPSALEAKEAQAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014158_1	1.1\|219182\|30\|NZ_CP014158\|CRISPRCasFinder,CRT	219182-219211	30	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	1615717-1615746	6	0.8
NZ_CP014158_1	1.2\|219242\|30\|NZ_CP014158\|CRISPRCasFinder,CRT,PILER-CR	219242-219271	30	NZ_CP027299	Streptomyces sp. SGAir0924 plasmid unnamed_5	263828-263857	6	0.8
NZ_CP014158_1	1.3\|219302\|30\|NZ_CP014158\|CRISPRCasFinder,CRT,PILER-CR	219302-219331	30	NZ_AP018520	Sphingobium sp. YG1 plasmid pYGP1, complete sequence	84760-84789	6	0.8
NZ_CP014158_1	1.3\|219302\|30\|NZ_CP014158\|CRISPRCasFinder,CRT,PILER-CR	219302-219331	30	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	156662-156691	6	0.8
NZ_CP014158_1	1.3\|219302\|30\|NZ_CP014158\|CRISPRCasFinder,CRT,PILER-CR	219302-219331	30	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	381852-381881	6	0.8
NZ_CP014158_1	1.3\|219302\|30\|NZ_CP014158\|CRISPRCasFinder,CRT,PILER-CR	219302-219331	30	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	7281-7310	6	0.8
NZ_CP014158_1	1.3\|219302\|30\|NZ_CP014158\|CRISPRCasFinder,CRT,PILER-CR	219302-219331	30	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	949845-949874	6	0.8

1. spacer 1.1|219182|30|NZ_CP014158|CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 6, identity: 0.8

----cacgagatcaaccgggcctactgcgcctcg	CRISPR spacer
gcgccac----tcaacggggcgtactgcgcctcg	Protospacer
    ***    ***** **** ************

2. spacer 1.2|219242|30|NZ_CP014158|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027299 (Streptomyces sp. SGAir0924 plasmid unnamed_5) position: , mismatch: 6, identity: 0.8

ctgctggaaatgcccgagcagacccagcgt-	CRISPR spacer
gtgctggaagtgcccgagcag-cccggcccg	Protospacer
 ********.*********** ***.** .

3. spacer 1.3|219302|30|NZ_CP014158|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018520 (Sphingobium sp. YG1 plasmid pYGP1, complete sequence) position: , mismatch: 6, identity: 0.8

gtgctgctcaccgacggatccctggcgttc	CRISPR spacer
atgatgctgaccgacggatccctggcgacg	Protospacer
.** **** ****************** .

4. spacer 1.3|219302|30|NZ_CP014158|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 6, identity: 0.8

gtgctgctcaccgacggatccctggcgttc	CRISPR spacer
gtgctgctcaccgccggatcgctgctgccc	Protospacer
************* ****** *** .*..*

5. spacer 1.3|219302|30|NZ_CP014158|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

gtgctgctcaccgacggatccctggcgttc	CRISPR spacer
gtgtacggcaccgacggatccctgacgttc	Protospacer
***.    ****************.*****

6. spacer 1.3|219302|30|NZ_CP014158|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 6, identity: 0.8

gtgctgctcaccgacggatccctggcgttc	CRISPR spacer
gtgctgctcaccgccggatcgctgctgccc	Protospacer
************* ****** *** .*..*

7. spacer 1.3|219302|30|NZ_CP014158|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 6, identity: 0.8

gtgctgctcaccgacggatccctggcgttc	CRISPR spacer
gtgctgctcaccgccggatcgctgctgccc	Protospacer
************* ****** *** .*..*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

330890 : 363230

Pseudomonas_phage(54.55%)

tail,transposase,integrase,protease

attL 321890:321915|attR 369679:369704

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
321890:321915	attL	NA	NA	NA	NA
WP_009614960.1\|330890_331796_-	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	1.8e-38	32.3
WP_161788534.1\|331792_332236_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_009614968.1\|332387_332783_+	ribosome-associated heat shock protein Hsp15	NA	NA	NA	NA
WP_061560381.1\|333431_333656_-	hypothetical protein	NA	NA	NA	NA
WP_061560382.1\|333667_334327_-	helix-turn-helix transcriptional regulator	A0A0A1IWY4	Pseudomonas_phage	8.6e-75	61.5
WP_061563187.1\|334558_334897_+	nucleotide excision repair protein	A0A2H4J3B6	uncultured_Caudovirales_phage	3.3e-22	51.0
WP_061560383.1\|334899_335346_+	hypothetical protein	L7P804	Pseudomonas_phage	7.4e-46	68.7
WP_061560384.1\|335342_335537_+	hypothetical protein	A0A076FRH8	Pseudomonas_phage	5.0e-15	76.8
WP_061560385.1\|335529_337587_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2H4JEQ4	uncultured_Caudovirales_phage	2.3e-195	51.9
WP_061560386.1\|337604_338324_+	ATP-binding protein	A0A2H4J809	uncultured_Caudovirales_phage	6.2e-87	65.3
WP_061560387.1\|339328_339712_+	hypothetical protein	A0A0A1IWY8	Pseudomonas_phage	5.8e-31	57.5
WP_061560388.1\|339695_340025_+	hypothetical protein	A0A125RN98	Pseudomonas_phage	2.5e-27	63.8
WP_061560389.1\|340042_340675_+	DUF3164 family protein	J9SHK0	Pseudomonas_phage	3.0e-32	37.4
WP_145923839.1\|340677_340869_+	hypothetical protein	NA	NA	NA	NA
WP_061560391.1\|340871_341180_+	hypothetical protein	A0A0A1IUY5	Pseudomonas_phage	7.7e-18	51.4
WP_145923840.1\|341181_341397_+	hypothetical protein	NA	NA	NA	NA
WP_061560393.1\|341396_341648_+	hypothetical protein	NA	NA	NA	NA
WP_061560394.1\|341647_342097_+	hypothetical protein	A0A076FRH0	Pseudomonas_phage	6.9e-60	79.2
WP_061560395.1\|342105_342357_+	hypothetical protein	NA	NA	NA	NA
WP_061560396.1\|342433_343108_+	DUF2786 domain-containing protein	L7P7W8	Pseudomonas_phage	2.6e-95	79.0
WP_061560397.1\|343117_343396_+	hypothetical protein	NA	NA	NA	NA
WP_061560398.1\|343392_343647_+	hypothetical protein	A0A125RNA7	Pseudomonas_phage	2.3e-12	53.4
WP_061560399.1\|343643_344048_+	regulatory protein GemA	A0A0A7DJY7	Pseudomonas_phage	1.1e-35	63.7
WP_061560400.1\|344050_344485_+	hypothetical protein	NA	NA	NA	NA
WP_061560401.1\|344564_344909_+	hypothetical protein	L7P853	Pseudomonas_phage	2.1e-24	56.6
WP_061560402.1\|344898_345402_+	lysozyme	A0A0U4JP67	Pseudomonas_phage	2.1e-33	51.6
WP_061560403.1\|345398_346028_+	hypothetical protein	Q5ZQY9	Pseudomonas_phage	2.1e-09	40.9
WP_061560404.1\|346027_346402_+	hypothetical protein	Q6QIC4	Burkholderia_phage	3.7e-14	43.2
WP_061560405.1\|346394_346706_+	hypothetical protein	A0A2H4JGU5	uncultured_Caudovirales_phage	3.6e-39	75.0
WP_061560406.1\|346708_347221_+	DUF3486 family protein	A0A2H4JD50	uncultured_Caudovirales_phage	2.0e-63	77.8
WP_145923965.1\|347393_348881_+	hypothetical protein	A0A2H4JF57	uncultured_Caudovirales_phage	2.8e-214	73.9
WP_061560408.1\|348877_350461_+	DUF935 domain-containing protein	A0A2P9JZI9	Alteromonadaceae_phage	8.5e-153	52.6
WP_082816435.1\|350523_351285_+	hypothetical protein	M4M9M5	Vibrio_phage	4.6e-72	53.4
WP_145923841.1\|351374_351863_+	hypothetical protein	A0A2H4J7V6	uncultured_Caudovirales_phage	2.5e-23	43.1
WP_061560410.1\|351917_352931_+	hypothetical protein	A0A2H4J9A2	uncultured_Caudovirales_phage	2.9e-53	43.3
WP_061560411.1\|352933_353851_+	hypothetical protein	A0A1C6ZDN1	Pseudomonas_phage	6.8e-86	56.3
WP_061560412.1\|353863_354304_+	hypothetical protein	NA	NA	NA	NA
WP_061560413.1\|354309_354717_+	DUF1320 domain-containing protein	A0A2P9JZJ4	Alteromonadaceae_phage	1.5e-24	50.5
WP_061560414.1\|354713_355157_+	phage virion morphogenesis protein	A0A2H4PAM9	Aphanizomenon_phage	7.4e-06	28.9
WP_061560415.1\|355149_355617_+	hypothetical protein	NA	NA	NA	NA
WP_061560416.1\|355625_355817_+	hypothetical protein	NA	NA	NA	NA
WP_061560417.1\|355819_356557_+	hypothetical protein	NA	NA	NA	NA
WP_061560418.1\|356608_356959_+	hypothetical protein	A0A1B0YZV7	Pseudomonas_phage	3.8e-13	39.2
WP_160336924.1\|357154_357319_-	hypothetical protein	NA	NA	NA	NA
WP_082816242.1\|357317_360587_+\|tail	phage tail tape measure protein	A0A2K9VGI5	Pontimonas_phage	3.8e-14	27.9
WP_061560420.1\|360579_361107_+	hypothetical protein	NA	NA	NA	NA
WP_082816243.1\|361106_362873_+	hypothetical protein	A0A1W6JTA3	Pseudomonas_phage	3.7e-149	50.2
WP_061560421.1\|362876_363230_+	hypothetical protein	A0A1B0YZV1	Pseudomonas_phage	1.3e-24	65.6
369679:369704	attR	NA	NA	NA	NA

DBSCAN-SWA_2

715116 : 779264

uncultured_Caudovirales_phage(29.03%)

plate,tRNA,tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061560561.1\|715116_715605_-	Bro-N domain-containing protein	A0A290FZK7	Caldibacillus_phage	5.1e-08	27.6
WP_009615522.1\|716063_716246_+	addiction module toxin, HicA family	A0A0R6PJD4	Moraxella_phage	2.5e-16	60.0
WP_043319209.1\|716278_716683_+	type II toxin-antitoxin system HicB family antitoxin	A0A0U4ISP5	Pseudomonas_phage	8.1e-60	84.8
WP_061560562.1\|716725_717910_-	Fic family protein	A0A1V0E025	Clostridioides_phage	1.5e-08	28.7
WP_061560563.1\|718212_721947_-	bifunctional diguanylate cyclase/phosphodiesterase	A0A127AWB9	Bacillus_phage	2.5e-17	33.9
WP_009615539.1\|722065_723916_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	3.4e-36	32.6
WP_058073278.1\|723994_726013_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.1e-75	40.3
WP_003085057.1\|726202_726418_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_061560564.1\|726621_727647_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.7e-107	57.6
WP_058487631.1\|727740_728310_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_043269307.1\|728392_728746_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_061560565.1\|728736_729273_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_061560566.1\|729498_730725_-	multifunctional CCA addition/repair protein	A0A076G5T8	Escherichia_phage	4.1e-78	42.6
WP_061560567.1\|731067_731577_-	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_009615572.1\|731635_733189_-	SpoVR family protein	NA	NA	NA	NA
WP_043269296.1\|733185_734457_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	1.6e-08	36.3
WP_009615576.1\|734573_736496_-	PrkA family serine protein kinase	NA	NA	NA	NA
WP_043269294.1\|736771_737101_-	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_043269293.1\|737123_737948_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	A0A2H4J0P0	uncultured_Caudovirales_phage	7.3e-07	31.4
WP_009615581.1\|737947_738328_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_058073272.1\|738356_739166_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_061560568.1\|739336_740335_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_145923845.1\|740467_741760_-	peptidylprolyl isomerase SurA	NA	NA	NA	NA
WP_061560570.1\|741740_744545_-	LPS-assembly protein LptD	NA	NA	NA	NA
WP_061560571.1\|744672_745689_+	phosphotransferase	NA	NA	NA	NA
WP_061560572.1\|745685_746360_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_009615593.1\|746360_747119_+	DnaJ domain-containing protein	NA	NA	NA	NA
WP_061560573.1\|747133_748174_-	DUF3530 family protein	NA	NA	NA	NA
WP_145923846.1\|748317_750741_+	PAS domain S-box protein	NA	NA	NA	NA
WP_009615596.1\|750780_751410_+	response regulator transcription factor	NA	NA	NA	NA
WP_145923968.1\|751552_752590_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_009615598.1\|752935_754045_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.1e-29	34.9
WP_009615599.1\|754086_755145_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009615600.1\|755319_756567_+	ABC transporter permease	NA	NA	NA	NA
WP_058073262.1\|756580_757408_+	ABC transporter permease	NA	NA	NA	NA
WP_043269271.1\|757638_758313_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_009615605.1\|758312_759137_+	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_043269267.1\|759207_760695_+	anthranilate synthase component I	NA	NA	NA	NA
WP_043319249.1\|760866_761175_-	transcriptional regulator	NA	NA	NA	NA
WP_043269263.1\|761304_762063_-	helix-turn-helix transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	8.6e-71	57.5
WP_061560576.1\|762458_762668_+	conjugal transfer protein TraR	NA	NA	NA	NA
WP_009615611.1\|762685_763045_+	hypothetical protein	NA	NA	NA	NA
WP_082816247.1\|763102_763594_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_058073259.1\|763874_764207_+\|holin	holin	B5TK61	Pseudomonas_phage	1.8e-20	49.5
WP_058073258.1\|764235_764754_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	7.6e-26	40.3
WP_061560577.1\|764750_765314_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	2.6e-48	67.6
WP_043269256.1\|765414_765741_+\|plate	phage baseplate protein	A0A2H4JA09	uncultured_Caudovirales_phage	7.1e-30	60.2
WP_061560578.1\|765737_766628_+\|plate	baseplate assembly protein	A0A0M4REB7	Salmonella_phage	2.3e-91	61.9
WP_061560579.1\|766620_767235_+\|tail	phage tail protein I	A0A2H4JDH5	uncultured_Caudovirales_phage	1.3e-61	59.1
WP_082816248.1\|767225_768776_+	hypothetical protein	A0A077K818	Ralstonia_phage	1.9e-80	54.8
WP_061560580.1\|769039_770197_+\|tail	phage tail sheath family protein	Q38068	Phage_PS17	4.0e-176	79.2
WP_043269248.1\|770209_770713_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	6.3e-62	69.1
WP_061560581.1\|770723_771035_+\|tail	phage tail assembly protein	A0A2H4J873	uncultured_Caudovirales_phage	5.9e-18	54.9
WP_061560582.1\|771193_773116_+	hypothetical protein	NA	NA	NA	NA
WP_061560583.1\|773144_773981_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	4.9e-67	48.6
WP_009615647.1\|773964_774171_+	hypothetical protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	4.3e-17	64.2
WP_061560584.1\|774217_775234_+	phage late control D family protein	A0A2H4JBF6	uncultured_Caudovirales_phage	8.5e-106	57.0
WP_061560585.1\|775245_775863_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	1.2e-65	64.9
WP_061560586.1\|775859_776219_+	hypothetical protein	NA	NA	NA	NA
WP_061560587.1\|776215_776476_+	hypothetical protein	B5WZU5	Pseudomonas_phage	4.3e-14	52.3
WP_061560588.1\|776788_777385_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.3e-71	61.6
WP_043269234.1\|777381_778431_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.3e-109	56.9
WP_061560589.1\|778427_779264_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	4.0e-69	53.5

DBSCAN-SWA_3

2211355 : 2287147

Acanthamoeba_polyphaga_mimivirus(10.0%)

tRNA,transposase,coat,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061561166.1\|2211355_2212741_+\|tRNA	cysteine--tRNA ligase	A0A2L2DK39	Acanthamoeba_polyphaga_mimivirus	5.1e-45	35.7
WP_061561167.1\|2213103_2213958_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	8.6e-27	32.2
WP_061561168.1\|2214683_2215994_+	trigger factor	NA	NA	NA	NA
WP_009623460.1\|2216085_2216724_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	9.2e-58	58.0
WP_009623458.1\|2216831_2218112_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.4e-137	59.3
WP_009623456.1\|2218246_2220643_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	9.3e-220	52.7
WP_003087931.1\|2220779_2221052_+	DNA-binding protein HU-beta	A4JWM7	Burkholderia_virus	2.5e-20	60.7
WP_061561169.1\|2221281_2223159_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_058488992.1\|2223575_2224346_-	dioxygenase	NA	NA	NA	NA
WP_009623417.1\|2224685_2224877_+	hypothetical protein	NA	NA	NA	NA
WP_061561170.1\|2224975_2225629_+	thiopurine S-methyltransferase	NA	NA	NA	NA
WP_061561171.1\|2225683_2226994_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_009623413.1\|2227103_2227991_-\|protease	protease HtpX	NA	NA	NA	NA
WP_009623411.1\|2228135_2228582_-	hypothetical protein	NA	NA	NA	NA
WP_009623409.1\|2228584_2229796_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_009623407.1\|2230098_2230500_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_043267143.1\|2230610_2231096_+	glutathione peroxidase	Q6VZR0	Canarypox_virus	6.8e-21	38.3
WP_061561172.1\|2231092_2231560_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_061561173.1\|2231573_2233898_-	response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	8.6e-45	30.6
WP_009623402.1\|2234039_2234933_+	ATP-binding protein	NA	NA	NA	NA
WP_043267136.1\|2234929_2235412_+	GAF domain-containing protein	NA	NA	NA	NA
WP_058489000.1\|2236515_2237193_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_009618909.1\|2237203_2237971_-	hypothetical protein	NA	NA	NA	NA
WP_009618910.1\|2238544_2239141_-	hypothetical protein	NA	NA	NA	NA
WP_061563233.1\|2239350_2240766_-	NCS1 family nucleobase:cation symporter-1	NA	NA	NA	NA
WP_051878413.1\|2240983_2241931_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_061561174.1\|2242094_2243030_-	carbamate kinase	NA	NA	NA	NA
WP_009618914.1\|2243046_2244405_-	allantoinase AllB	NA	NA	NA	NA
WP_051878517.1\|2244417_2245857_-	YfcC family protein	NA	NA	NA	NA
WP_009618916.1\|2245859_2246888_-	aspartate carbamoyltransferase catalytic subunit	NA	NA	NA	NA
WP_009618917.1\|2246974_2247751_-	hypothetical protein	NA	NA	NA	NA
WP_145923869.1\|2248081_2249443_+	OmpA family protein	NA	NA	NA	NA
WP_061561176.1\|2249470_2250517_-	ornithine cyclodeaminase	A0A1V0SL93	Klosneuvirus	8.2e-96	52.9
WP_061561177.1\|2250654_2251149_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_043267118.1\|2251442_2251853_-	hypothetical protein	NA	NA	NA	NA
WP_043315061.1\|2251931_2252348_-	hypothetical protein	NA	NA	NA	NA
WP_061561178.1\|2252491_2254930_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_061561179.1\|2255076_2255748_+	transglutaminase family protein	NA	NA	NA	NA
WP_061561180.1\|2255863_2256484_+	glutathione S-transferase	NA	NA	NA	NA
WP_061561181.1\|2256577_2257510_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.6e-24	33.8
WP_009618941.1\|2257506_2258283_+	ABC transporter permease	NA	NA	NA	NA
WP_061561182.1\|2258619_2260665_-	TonB-dependent receptor	NA	NA	NA	NA
WP_009618943.1\|2261287_2262805_+	sodium/proline symporter PutP	NA	NA	NA	NA
WP_061561183.1\|2262856_2264047_-	sugar transporter	NA	NA	NA	NA
WP_009618945.1\|2264281_2264506_+	DUF2132 domain-containing protein	NA	NA	NA	NA
WP_061561184.1\|2265255_2268615_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_145923870.1\|2268759_2271867_-	glycosyl transferase family 51	NA	NA	NA	NA
WP_061561185.1\|2272075_2272306_+	hypothetical protein	NA	NA	NA	NA
WP_061561186.1\|2272692_2273370_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_061561187.1\|2273646_2275029_+	amino acid permease	NA	NA	NA	NA
WP_061561188.1\|2275240_2277199_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_061561189.1\|2277214_2277811_-	LemA family protein	NA	NA	NA	NA
WP_145923871.1\|2278253_2280203_+	TonB-dependent receptor	NA	NA	NA	NA
WP_061561190.1\|2280210_2280918_+	(2Fe-2S) ferredoxin domain-containing protein	NA	NA	NA	NA
WP_061561191.1\|2280914_2281820_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_061561192.1\|2281826_2282852_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_061561193.1\|2282867_2285249_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_058070116.1\|2285252_2285999_-	molecular chaperone	NA	NA	NA	NA
WP_061561194.1\|2286018_2286564_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_009618970.1\|2286613_2287147_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_4

4248128 : 4251864

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058071766.1\|4248128_4248365_+	hypothetical protein	A0A2H4JDJ8	uncultured_Caudovirales_phage	1.6e-12	51.3
WP_061562078.1\|4248702_4249368_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.0e-83	75.3
WP_061562079.1\|4249483_4249876_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	6.1e-52	77.5
WP_061562080.1\|4249875_4250235_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	8.0e-35	64.2
WP_061562081.1\|4250234_4250534_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	3.2e-21	58.8
WP_043272060.1\|4250530_4250866_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	2.9e-39	71.2
WP_061562082.1\|4250862_4251864_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	3.4e-139	73.7

DBSCAN-SWA_5

4526168 : 4630535

103

Pseudomonas_phage(55.56%)

transposase,portal,protease,terminase,integrase

attL 4585509:4585555|attR 4629732:4629778

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061560270.1\|4526168_4527341_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_145923920.1\|4533921_4534194_+	hypothetical protein	NA	NA	NA	NA
WP_061562191.1\|4534317_4535127_-	hypothetical protein	NA	NA	NA	NA
WP_061563304.1\|4535196_4535499_+	hypothetical protein	NA	NA	NA	NA
WP_061562192.1\|4535523_4538862_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_061562193.1\|4538861_4541831_-	site-specific DNA-methyltransferase	A0A023MI13	Escherichia_phage	5.2e-10	41.4
WP_061562194.1\|4542168_4542711_-	flavin reductase family protein	NA	NA	NA	NA
WP_082816361.1\|4542775_4544347_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	A0A1V0SKB7	Klosneuvirus	9.7e-16	25.2
WP_061562195.1\|4545919_4547263_+\|integrase	site-specific integrase	A0A2H4IYX8	uncultured_Caudovirales_phage	9.3e-169	67.9
WP_145923921.1\|4547330_4548422_-	hypothetical protein	NA	NA	NA	NA
WP_145923991.1\|4548888_4549218_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_082816363.1\|4549282_4550701_+	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_034040907.1\|4550828_4551158_+	hypothetical protein	NA	NA	NA	NA
WP_061562196.1\|4551265_4552234_+	DUF932 domain-containing protein	A0A0H4INH5	Stenotrophomonas_phage	1.5e-59	42.7
WP_061562197.1\|4552387_4552789_+	hypothetical protein	NA	NA	NA	NA
WP_061562198.1\|4552911_4553916_+	alkaline phosphatase	A6XMH8	Bacillus_virus	7.2e-49	38.3
WP_061562199.1\|4553994_4554915_+	hypothetical protein	NA	NA	NA	NA
WP_061562200.1\|4554958_4555141_+	hypothetical protein	NA	NA	NA	NA
WP_061562201.1\|4555225_4555561_+	hypothetical protein	NA	NA	NA	NA
WP_061562202.1\|4555590_4555938_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_061562203.1\|4556076_4556523_+	hypothetical protein	NA	NA	NA	NA
WP_061562204.1\|4556720_4559300_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_014820685.1\|4559998_4560979_+\|transposase	IS5-like element ISPst5 family transposase	A0A077K814	Ralstonia_phage	2.5e-94	57.3
WP_037005584.1\|4562141_4563179_-\|transposase	IS630-like element ISPa47 family transposase	NA	NA	NA	NA
WP_082816364.1\|4563208_4564144_+	WYL domain-containing protein	NA	NA	NA	NA
WP_082816365.1\|4564223_4565336_+	DUF697 domain-containing protein	NA	NA	NA	NA
WP_071535784.1\|4565391_4565730_+	hypothetical protein	NA	NA	NA	NA
WP_061562206.1\|4565829_4566531_-	inovirus Gp2 family protein	NA	NA	NA	NA
WP_025981557.1\|4567082_4567298_-	AlpA family phage regulatory protein	A0A1V0E8E5	Vibrio_phage	8.2e-11	52.5
WP_019726434.1\|4567538_4568048_+	hypothetical protein	NA	NA	NA	NA
WP_082816366.1\|4568044_4569418_+	hypothetical protein	NA	NA	NA	NA
WP_023123593.1\|4569414_4570584_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_082816367.1\|4570558_4571188_+	hypothetical protein	NA	NA	NA	NA
WP_160336936.1\|4571232_4572342_+	hypothetical protein	NA	NA	NA	NA
WP_082816368.1\|4572435_4574232_-	TIGR04141 family sporadically distributed protein	NA	NA	NA	NA
WP_061562207.1\|4574416_4576267_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_061562208.1\|4576309_4579378_-	DEAD/DEAH box helicase family protein	A0A2K5B2C2	Erysipelothrix_phage	3.4e-126	31.7
WP_061562209.1\|4579388_4581260_-	site-specific DNA-methyltransferase	A0A2K5B2C1	Erysipelothrix_phage	1.6e-110	38.2
WP_061562210.1\|4581303_4581978_-	DUF4391 domain-containing protein	NA	NA	NA	NA
WP_061563305.1\|4581974_4585265_-	helicase	A0A2K5B253	Erysipelothrix_phage	7.7e-241	43.1
4585509:4585555	attL	NA	NA	NA	NA
WP_058487177.1\|4585698_4585959_-	hypothetical protein	H2BDA2	Pseudomonas_phage	1.9e-14	52.9
WP_061563306.1\|4585994_4586258_-	hypothetical protein	A0A125RNP3	Pseudomonas_phage	4.7e-32	83.7
WP_061562211.1\|4586317_4586692_-	hypothetical protein	J7HXL1	Pseudomonas_phage	8.4e-35	69.5
WP_061562212.1\|4586701_4587115_-	cell wall hydrolase	A0A2D1GNI1	Pseudomonas_phage	8.6e-49	66.4
WP_061562213.1\|4587181_4587418_-	hypothetical protein	NA	NA	NA	NA
WP_145923992.1\|4587417_4588674_-	hypothetical protein	A0A0M4UKC5	Ralstonia_phage	3.2e-46	34.1
WP_145923922.1\|4589180_4589927_-	hypothetical protein	NA	NA	NA	NA
WP_061562216.1\|4589953_4590919_-	hypothetical protein	NA	NA	NA	NA
WP_061562217.1\|4590918_4594491_-	hypothetical protein	A0A0M4U447	Ralstonia_phage	3.5e-178	35.7
WP_061562218.1\|4594557_4594863_-	hypothetical protein	NA	NA	NA	NA
WP_061562219.1\|4594876_4595278_-	hypothetical protein	NA	NA	NA	NA
WP_061562220.1\|4595277_4598994_-	tape measure protein	A0A2I7S9D9	Vibrio_phage	8.6e-47	42.3
WP_145923923.1\|4599211_4599559_+	hypothetical protein	NA	NA	NA	NA
WP_061562223.1\|4599581_4600328_-	hypothetical protein	NA	NA	NA	NA
WP_061562224.1\|4600357_4600573_-	hypothetical protein	NA	NA	NA	NA
WP_061562225.1\|4600623_4601061_-	hypothetical protein	NA	NA	NA	NA
WP_145923924.1\|4601060_4601381_-	hypothetical protein	NA	NA	NA	NA
WP_061562226.1\|4601380_4601698_-	DUF2190 family protein	A0A1W6JT93	Pseudomonas_phage	1.7e-44	91.4
WP_061562227.1\|4601764_4603855_-\|protease	Clp protease ClpP	A0A1W6JT88	Pseudomonas_phage	0.0e+00	94.2
WP_061562228.1\|4603826_4605473_-\|portal	phage portal protein	A0A1W6JTB6	Pseudomonas_phage	1.7e-305	95.1
WP_061562229.1\|4605472_4605688_-	hypothetical protein	A0A0A0YRQ0	Pseudomonas_phage	2.3e-29	98.6
WP_061562230.1\|4605678_4607643_-\|terminase	phage terminase large subunit family protein	A0A1B0Z2K0	Pseudomonas_phage	0.0e+00	94.6
WP_061562231.1\|4607614_4608160_-	DNA-packaging protein	A0A1B0Z033	Pseudomonas_phage	3.9e-81	85.1
WP_061562232.1\|4608331_4609120_-	hypothetical protein	A0A1B0Z000	Pseudomonas_phage	4.2e-44	43.6
WP_061562233.1\|4609130_4609502_-	hypothetical protein	W6MYB2	Pseudomonas_phage	6.4e-27	55.1
WP_061562234.1\|4609718_4610108_-	antitermination protein Q	A0A1W6JTD2	Pseudomonas_phage	5.8e-47	64.3
WP_061562235.1\|4610110_4610410_-	hypothetical protein	A0A2D1GNG3	Pseudomonas_phage	5.9e-15	42.9
WP_061562236.1\|4610387_4610807_-	hypothetical protein	NA	NA	NA	NA
WP_061562237.1\|4610806_4611238_-	VRR-NUC domain-containing protein	A0A2D1GNH3	Pseudomonas_phage	1.9e-38	54.2
WP_061562238.1\|4611234_4611606_-	recombinase	NA	NA	NA	NA
WP_061563308.1\|4611602_4611818_-	hypothetical protein	NA	NA	NA	NA
WP_061562239.1\|4611828_4612509_-	hypothetical protein	A0A1B0YZY6	Pseudomonas_phage	3.9e-38	46.6
WP_061562240.1\|4612505_4613240_-	hypothetical protein	A0A1W6JTD5	Pseudomonas_phage	6.9e-41	53.3
WP_082816369.1\|4613251_4613992_-	DNA-binding protein	A0A1B0YZY9	Pseudomonas_phage	3.1e-49	48.5
WP_061562241.1\|4614053_4614674_-	hypothetical protein	NA	NA	NA	NA
WP_058490330.1\|4614941_4615304_-	hypothetical protein	NA	NA	NA	NA
WP_061562242.1\|4615307_4615721_-	hypothetical protein	NA	NA	NA	NA
WP_074980421.1\|4615733_4615955_-	helix-turn-helix domain-containing protein	A0A2D1GND2	Pseudomonas_phage	3.4e-20	61.6
WP_061562243.1\|4616050_4616755_+	hypothetical protein	A0A2H4J6Q0	uncultured_Caudovirales_phage	4.6e-26	45.4
WP_061562244.1\|4616758_4616995_+	hypothetical protein	NA	NA	NA	NA
WP_061562245.1\|4617051_4617507_+	hypothetical protein	NA	NA	NA	NA
WP_070065508.1\|4617496_4618252_+	DUF1828 domain-containing protein	A4JX42	Burkholderia_virus	8.1e-53	43.4
WP_061562247.1\|4618687_4618945_-	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_058145433.1\|4619513_4619726_+	hypothetical protein	NA	NA	NA	NA
WP_061562248.1\|4619729_4619993_+	hypothetical protein	NA	NA	NA	NA
WP_145923925.1\|4620077_4620323_+	hypothetical protein	NA	NA	NA	NA
WP_061562250.1\|4620366_4620573_+	hypothetical protein	NA	NA	NA	NA
WP_081884633.1\|4620742_4620925_+	hypothetical protein	A0A1B0VN94	Pseudomonas_phage	2.4e-19	69.8
WP_061562251.1\|4620962_4621169_+	hypothetical protein	NA	NA	NA	NA
WP_082816370.1\|4621205_4622063_+	pentapeptide repeat-containing protein	A0A221SAP8	Ralstonia_phage	2.4e-21	62.7
WP_061562252.1\|4622407_4622671_+	hypothetical protein	A0A0U3TGX2	Pseudomonas_phage	4.1e-12	58.8
WP_061562253.1\|4622670_4622985_+	hypothetical protein	NA	NA	NA	NA
WP_061562254.1\|4623187_4623568_+	hypothetical protein	A0A2H4J2C6	uncultured_Caudovirales_phage	8.8e-24	44.6
WP_061563311.1\|4623734_4624097_+	hypothetical protein	A0A0U1UNQ6	Pseudomonas_phage	3.3e-36	65.0
WP_061562255.1\|4624093_4625851_+	DEAD/DEAH box helicase	A0A2K8IBK8	Pseudomonas_phage	3.3e-299	85.0
WP_061562256.1\|4625908_4626340_+	hypothetical protein	NA	NA	NA	NA
WP_061562257.1\|4626336_4626660_+	DUF4406 domain-containing protein	L7TKQ2	Pseudomonas_virus	5.4e-30	63.2
WP_061562258.1\|4626748_4626946_+	hypothetical protein	H2BD39	Pseudomonas_phage	1.6e-05	46.0
WP_061562259.1\|4627765_4628281_+	hypothetical protein	H2BDI1	Pseudomonas_virus	4.3e-21	38.1
WP_043270643.1\|4628321_4628534_+	hypothetical protein	NA	NA	NA	NA
WP_061562260.1\|4628533_4629646_+\|integrase	tyrosine-type recombinase/integrase	A0A0U4JIT5	Pseudomonas_phage	9.8e-39	33.4
WP_009617038.1\|4629895_4630252_-	MerR family transcriptional regulator	NA	NA	NA	NA
4629732:4629778	attR	NA	NA	NA	NA
WP_003090661.1\|4630232_4630535_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	1.0e-11	38.9

DBSCAN-SWA_6

5127833 : 5194389

Pseudomonas_phage(52.63%)

tail,portal,protease,terminase,head,integrase,capsid,holin

attL 5131032:5131091|attR 5192703:5192766

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043315592.1\|5127833_5128883_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.3e-18	36.8
WP_043271102.1\|5129176_5130013_+	5'-nucleotidase, lipoprotein e(P4) family	NA	NA	NA	NA
WP_043271104.1\|5130199_5130898_-	hypothetical protein	NA	NA	NA	NA
5131032:5131091	attL	NA	NA	NA	NA
WP_061562416.1\|5131248_5131509_-	hypothetical protein	H2BDA2	Pseudomonas_phage	3.9e-15	52.9
WP_061562417.1\|5131539_5132049_-	DUF2514 domain-containing protein	NA	NA	NA	NA
WP_061562418.1\|5132045_5132372_-	hypothetical protein	A0A1B2IBL3	Erwinia_phage	1.2e-24	48.2
WP_061562419.1\|5132368_5132863_-	glycoside hydrolase family 104 protein	Q9MC90	Pseudomonas_phage	1.9e-47	61.2
WP_160336941.1\|5133030_5134038_+	acyltransferase	W6MVL2	Pseudomonas_phage	4.4e-30	33.9
WP_145923938.1\|5134012_5136031_-	hypothetical protein	A0A292GL42	Xanthomonas_phage	1.6e-92	35.3
WP_082816392.1\|5136030_5137083_-	DUF2793 domain-containing protein	F5B3P3	Synechococcus_phage	4.6e-22	60.2
WP_082816393.1\|5136758_5139914_-	hypothetical protein	Q5DN19	Alphaproteobacteria_virus	6.0e-65	29.4
WP_061562423.1\|5139906_5140341_-	hypothetical protein	NA	NA	NA	NA
WP_061562424.1\|5140337_5141225_-	DUF2163 domain-containing protein	NA	NA	NA	NA
WP_061562425.1\|5141604_5142480_-	hypothetical protein	NA	NA	NA	NA
WP_082816395.1\|5142479_5145068_-\|tail	phage tail tape measure protein	D4FUM0	Pseudomonas_phage	5.4e-165	58.6
WP_082816396.1\|5145338_5145596_-	hypothetical protein	A0A0U4J8S9	Pseudomonas_phage	1.3e-31	75.0
WP_061562428.1\|5145619_5145979_-\|tail	phage tail protein	Q9MCA4	Pseudomonas_phage	2.5e-52	88.2
WP_061562429.1\|5145982_5146480_-\|tail	phage tail protein	H2BDC0	Pseudomonas_virus	4.7e-57	66.1
WP_061562430.1\|5147233_5147596_-	DUF3168 domain-containing protein	Q9MCA6	Pseudomonas_phage	7.3e-36	61.2
WP_061562431.1\|5147595_5148078_-	hypothetical protein	A0A286S249	Klebsiella_phage	8.6e-32	46.2
WP_082816397.1\|5148078_5148723_-	methyltransferase domain-containing protein	A0A0U4IIB3	Pseudomonas_phage	2.1e-89	75.2
WP_061562432.1\|5148673_5149486_-	hypothetical protein	D4FUL8	Pseudomonas_phage	4.1e-151	90.7
WP_145923939.1\|5149596_5150100_-	hypothetical protein	NA	NA	NA	NA
WP_061562433.1\|5150280_5150637_-\|head	phage head closure protein	Q9XJT0	Pseudomonas_phage	1.4e-58	90.7
WP_061562434.1\|5150845_5151166_-\|head,tail	phage gp6-like head-tail connector protein	H2BDB3	Pseudomonas_virus	3.9e-49	89.6
WP_070065510.1\|5151146_5151743_-	hypothetical protein	H2BDB2	Pseudomonas_virus	2.9e-98	84.8
WP_061562435.1\|5151906_5153094_-\|capsid	phage major capsid protein	H2BDB0	Pseudomonas_virus	3.9e-203	93.7
WP_061562436.1\|5153090_5153981_-\|protease	Clp protease ClpP	A0A0U4B0F3	Pseudomonas_phage	1.8e-160	94.9
WP_061562437.1\|5154112_5155378_-\|portal	phage portal protein	A0A0U4IIV7	Pseudomonas_phage	5.5e-203	84.6
WP_061562438.1\|5155531_5157223_-\|terminase	terminase large subunit	A0A0U4B0C7	Pseudomonas_phage	0.0e+00	96.1
WP_061562439.1\|5157224_5157605_-	hypothetical protein	A0A0U4JIP6	Pseudomonas_phage	7.9e-65	96.8
WP_061562440.1\|5157818_5158133_-	HNH endonuclease	H2BDK0	Pseudomonas_virus	2.3e-49	87.5
WP_061562441.1\|5158125_5158365_-	hypothetical protein	H2BDJ8	Pseudomonas_virus	3.5e-18	55.1
WP_061562442.1\|5158609_5158912_-	hypothetical protein	H2BDJ7	Pseudomonas_virus	5.6e-21	51.5
WP_061562443.1\|5158953_5159154_-	hypothetical protein	NA	NA	NA	NA
WP_061562444.1\|5159146_5159401_-	hypothetical protein	NA	NA	NA	NA
WP_061562445.1\|5159397_5159598_-	hypothetical protein	NA	NA	NA	NA
WP_160336942.1\|5159597_5159765_-	hypothetical protein	NA	NA	NA	NA
WP_061562446.1\|5160062_5160308_-	hypothetical protein	NA	NA	NA	NA
WP_061562447.1\|5160304_5160631_-\|holin	phage holin family protein	Q9MC42	Pseudomonas_phage	9.6e-27	62.4
WP_061562448.1\|5160623_5161004_-	hypothetical protein	H2BDJ3	Pseudomonas_virus	4.1e-29	59.7
WP_160336943.1\|5161174_5161324_-	hypothetical protein	NA	NA	NA	NA
WP_061562449.1\|5162032_5162635_-	hypothetical protein	A0A0S2SYA9	Pseudomonas_phage	1.6e-48	48.7
WP_061562450.1\|5162705_5162948_-	hypothetical protein	NA	NA	NA	NA
WP_061562451.1\|5162947_5163589_-	hypothetical protein	Q9MC46	Pseudomonas_phage	4.7e-110	92.5
WP_061562452.1\|5163585_5164314_-	serine/threonine protein phosphatase	A0A2H4J0P0	uncultured_Caudovirales_phage	1.4e-102	71.0
WP_061562453.1\|5164310_5164781_-	hypothetical protein	A0A2H4J106	uncultured_Caudovirales_phage	5.9e-62	72.4
WP_061562454.1\|5164773_5165124_-	hypothetical protein	NA	NA	NA	NA
WP_061562455.1\|5165123_5165369_-	hypothetical protein	NA	NA	NA	NA
WP_061562456.1\|5165368_5165878_-	hypothetical protein	H2BDI1	Pseudomonas_virus	1.9e-69	80.5
WP_061562457.1\|5165987_5167817_-	AAA family ATPase	A0A0U4B0G9	Pseudomonas_phage	0.0e+00	90.5
WP_061562458.1\|5167813_5168731_-	YdaU family protein	A8HP60	Thalassomonas_phage	7.9e-18	46.7
WP_061562459.1\|5168727_5168916_-	hypothetical protein	A0A0U4IIX2	Pseudomonas_phage	2.8e-23	83.9
WP_061562460.1\|5168897_5169107_-	hypothetical protein	A0A0S2SYE2	Pseudomonas_phage	2.0e-06	68.6
WP_061562461.1\|5169108_5169543_-	hypothetical protein	NA	NA	NA	NA
WP_061562462.1\|5169630_5169837_+	hypothetical protein	NA	NA	NA	NA
WP_145923940.1\|5169912_5170248_+	hypothetical protein	NA	NA	NA	NA
WP_061562464.1\|5170509_5170743_-	hypothetical protein	NA	NA	NA	NA
WP_082816459.1\|5171191_5171536_+	S24 family peptidase	A0A1W6JNY2	Morganella_phage	2.2e-26	49.5
WP_082816402.1\|5171562_5172159_+	hypothetical protein	NA	NA	NA	NA
WP_061562467.1\|5172162_5172474_+	hypothetical protein	NA	NA	NA	NA
WP_061562468.1\|5172504_5172984_+	hypothetical protein	J7HXI2	Pseudomonas_phage	2.8e-11	38.6
WP_061562469.1\|5173044_5173263_+	hypothetical protein	NA	NA	NA	NA
WP_058071193.1\|5173608_5173845_+	hypothetical protein	NA	NA	NA	NA
WP_061562471.1\|5173947_5174871_+	hypothetical protein	A0A1R3Y6Z6	Salmonella_virus	6.6e-49	39.4
WP_061562472.1\|5175047_5175263_+	hypothetical protein	NA	NA	NA	NA
WP_061562473.1\|5175280_5175691_-	hypothetical protein	NA	NA	NA	NA
WP_061562474.1\|5175687_5176152_-	ImmA/IrrE family metallo-endopeptidase	Q332A2	Clostridium_botulinum_C_phage	2.7e-06	30.5
WP_061563328.1\|5176263_5176497_-	hypothetical protein	NA	NA	NA	NA
WP_061562475.1\|5176541_5176778_-	hypothetical protein	NA	NA	NA	NA
WP_145923941.1\|5176927_5177437_+	hypothetical protein	A0A1B0VMC8	Pseudomonas_phage	4.8e-49	62.7
WP_061562476.1\|5178146_5178359_+	hypothetical protein	NA	NA	NA	NA
WP_061562477.1\|5178362_5178626_+	hypothetical protein	NA	NA	NA	NA
WP_061562478.1\|5178898_5179093_+	hypothetical protein	A0A1B0VME6	Pseudomonas_phage	2.2e-07	50.0
WP_082656981.1\|5179283_5179775_+	hypothetical protein	Q7Y5K0	Xanthomonas_virus	5.7e-31	43.7
WP_061563329.1\|5179767_5180874_+	hypothetical protein	A0A0U4B0I3	Pseudomonas_phage	3.8e-35	63.6
WP_082816403.1\|5180873_5181365_+	HNH endonuclease	A0A172JFU7	Citrobacter_phage	2.3e-24	46.8
WP_061562479.1\|5181461_5181788_+	hypothetical protein	NA	NA	NA	NA
WP_061562480.1\|5181784_5181976_+	hypothetical protein	NA	NA	NA	NA
WP_162493535.1\|5182263_5182407_+	hypothetical protein	NA	NA	NA	NA
WP_061562481.1\|5182569_5183628_+	hypothetical protein	Q9MC69	Pseudomonas_phage	2.7e-46	79.4
WP_061562482.1\|5183636_5184557_+	DNA recombinase	F1C5B8	Cronobacter_phage	1.4e-62	50.4
WP_061562483.1\|5184553_5185198_+	recombinase	A0A2I7RQG4	Vibrio_phage	1.1e-13	30.2
WP_061562484.1\|5185194_5185647_+	hypothetical protein	NA	NA	NA	NA
WP_061562485.1\|5185643_5186108_+	hypothetical protein	A0A2H4J101	uncultured_Caudovirales_phage	2.6e-54	64.9
WP_061562486.1\|5186104_5186353_+	hypothetical protein	NA	NA	NA	NA
WP_061562488.1\|5186920_5187145_+	hypothetical protein	NA	NA	NA	NA
WP_061562489.1\|5187141_5188143_+	hypothetical protein	X5I3A6	Pseudomonas_phage	1.9e-09	76.9
WP_061562490.1\|5188621_5188984_+	hypothetical protein	NA	NA	NA	NA
WP_061562491.1\|5188976_5189468_+	hypothetical protein	NA	NA	NA	NA
WP_061562492.1\|5189854_5190193_+	hypothetical protein	Q9MC61	Pseudomonas_phage	1.6e-05	41.3
WP_061562494.1\|5190525_5190843_+	hypothetical protein	NA	NA	NA	NA
WP_061562495.1\|5190839_5191169_+	hypothetical protein	W6MWX0	Pseudomonas_phage	6.7e-12	43.9
WP_057380215.1\|5191377_5191623_+	hypothetical protein	B5WZU8	Pseudomonas_phage	8.2e-39	93.7
WP_061562496.1\|5191619_5192594_-\|integrase	site-specific integrase	W6MYA3	Pseudomonas_phage	1.6e-165	91.0
WP_009620599.1\|5192888_5193599_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA
5192703:5192766	attR	NA	NA	NA	NA
WP_043271106.1\|5193630_5194389_-	MBL fold metallo-hydrolase	A0A0C5AFC1	Paenibacillus_phage	3.0e-31	36.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP014158

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection