CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP014634	Corynebacterium simulans strain PES1 chromosome, complete genome	2 crisprs	WYL,cas4,DEDDh,cas3,csa3,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,DinG	4	13	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014634_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014634_1

1536901-1538758

TypeI-E

I-C,I-E,II-B

Consensus_repeat	Method
GGAAATACCTCCGCGTGCGCGGAGAAGAG	CRISPRCasFinder
GGAAATACCTCCGCGTGCGCGGAGAAGAG	CRT
GGAAATACCTCCGCGTGCGCGGAGAAGAG	PILER-CR

30 spacers

cas2,cas1,cas3,cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of NZ_CP014634_1

>merge|NZ_CP014634|1|1536901-1538758|CRISPRCasFinder,CRT,PILER-CR
CTTCATACCTCCGCGTGCGCGGAGAAGAGCCCGTAGTCGTGGAGGCTATGCACTATGGCCCGGAAATACCTCCGCGTGCGCGGAGAAGAGCGCTACAGCTTACAGGCTTCACCACCCGTATTGGAAATACCTCCGCGTGCGCGGAGAAGAGACACGGCCCCATCTTCCGAGCGGCGGGCCGTGGGAAATACCTCCGCGTGCGCGGAGAAGAGAGTCGGCCATGGTGACCCTAACGCTGGTTGTGGGAAATACCTCCGCGTGCGCGGAGAAGAGTTGTCCAATCTATTGGTTCCCCATGCCATTTAGGAAATACCTCCGCGTGCGCGGAGAAGAGGCGCCTGGAGTTAAACACCTTGGACCGTAATGGGAAATACCTCCGCGTGCGCGGAGAAGAGCGGCTCGTGGCCTACGTCTTCGATGATGAGGGGGAAATACCTCCGCGTGCGCGGAGAAGAGAACATCATCAACGGCCTGATTAATGGCATTAAGGAAATACCTCCGCGTGCGCGGAGAAGAGGGTGCCCGCGTGCTAGGCATGAAGGTGCCGGCGGAAATACCTCCGCGTGCGCGGAGAAGAGTGTTCTTCCGCCAGGCAGAAGACAACAAGGGTGGAAATACCTCCGCGTGCGCGGAGAAGAGTGGTACTGGGAGCACATGCCGGGCGGCGAGCCGGAAATACCTCCGCGTGCGCGGAGAAGAGGTATCCGCCACGGTGCGCGGCTATTCAACCCCGGAAATACCTCCGCGTGCGCGGAGAAGAGAAGCGCGGGGGCCGGTAGTCAGCTTCCTGGTAGGAAATACCTCCGCGTGCGCGGAGAAGAGCACGAACAAACATCAAAGGGGTGAAAAAGCCGGGAAATACCTCCGCGTGCGCGGAGAAGAGCTTCGTCGAAAGCTATGACCGAGGATTCATAGGAAATACCTCCGCGTGCGCGGAGAAGAGAAACACCAGGCCTATCACCTGATACAAAGATAGGAAATACCTCCGCGTGCGCGGAGAAGAGCCACGCTGGTTAACCGCCTGACCGTGGATGGTGGAAATACCTCCGCGTGCGCGGAGAAGAGGGTTGCGCGGTGGTGAGCGTGTGGCGCAGCTTGGAAATACCTCCGCGTGCGCGGAGAAGAGCGTGGGTGTAGGTGGTCTACCTGAAAGGCGGTGGAAATACCTCCGCGTGCGCGGAGAAGAGGAGTGATGGTGTTACAGCCGGGCGCATTTGCTGGAAATACCTCCGCGTGCGCGGAGAAGAGGCACACGCCTTACCGCCACCCCTCACACCCATGGAAATACCTCCGCGTGCGCGGAGAAGAGCACTTCATGATGATGTTCGCGGCGCGAGTCTGGGAAATACCTCCGCGTGCGCGGAGAAGAGATGGTGATAAGTGGCGTGTAGCCCATGGGCTAGGAAATACCTCCGCGTGCGCGGAGAAGAGGCAGCGATGTGCGCTAGAGCGCGGTGAAGCTTGGAAATACCTCCGCGTGCGCGGAGAAGAGGGTGGGCTGCCTTAAACGCCTTCGAGTTGAACGGAAATACCTCCGCGTGCGCGGAGAAGAGACGCTTAGGCGTGGTCTGGGTGGACATTCCTGGGAAATACCTCCGCGTGCGCGGAGAAGAGGCCTTCTTAGCAAAGTGCACCTTCACCAAGCCGGAAATACCTCCGCGTGCGCGGAGAAGAGAGCTCCATGAGGTAGGCGGATTCCGGTATCTCGGAAATACCTCCGCGTGCGCGGAGAAGAGGCCATGTAGTCGGCTAGGGCTGTGGTGAGCTCGGAAATACCTCCGCGTGCGCGGAGAAGAGCCCTTCTTGTGGACACGATTCCCGCTCTACCGAGAAATACCTCCGCGTGCGCGGAGAAGAG

>NZ_CP014634|1|1|1536901-1538758|CRISPRCasFinder
CTTCATACCTCCGCGTGCGCGGAGAAGAG	CCCGTAGTCGTGGAGGCTATGCACTATGGCCC
GGAAATACCTCCGCGTGCGCGGAGAAGAG	CGCTACAGCTTACAGGCTTCACCACCCGTATT
GGAAATACCTCCGCGTGCGCGGAGAAGAG	ACACGGCCCCATCTTCCGAGCGGCGGGCCGTG
GGAAATACCTCCGCGTGCGCGGAGAAGAG	AGTCGGCCATGGTGACCCTAACGCTGGTTGTG
GGAAATACCTCCGCGTGCGCGGAGAAGAG	TTGTCCAATCTATTGGTTCCCCATGCCATTTA
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GCGCCTGGAGTTAAACACCTTGGACCGTAATG
GGAAATACCTCCGCGTGCGCGGAGAAGAG	CGGCTCGTGGCCTACGTCTTCGATGATGAGGG
GGAAATACCTCCGCGTGCGCGGAGAAGAG	AACATCATCAACGGCCTGATTAATGGCATTAA
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GGTGCCCGCGTGCTAGGCATGAAGGTGCCGGC
GGAAATACCTCCGCGTGCGCGGAGAAGAG	TGTTCTTCCGCCAGGCAGAAGACAACAAGGGT
GGAAATACCTCCGCGTGCGCGGAGAAGAG	TGGTACTGGGAGCACATGCCGGGCGGCGAGCC
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GTATCCGCCACGGTGCGCGGCTATTCAACCCC
GGAAATACCTCCGCGTGCGCGGAGAAGAG	AAGCGCGGGGGCCGGTAGTCAGCTTCCTGGTA
GGAAATACCTCCGCGTGCGCGGAGAAGAG	CACGAACAAACATCAAAGGGGTGAAAAAGCCG
GGAAATACCTCCGCGTGCGCGGAGAAGAG	CTTCGTCGAAAGCTATGACCGAGGATTCATA
GGAAATACCTCCGCGTGCGCGGAGAAGAG	AAACACCAGGCCTATCACCTGATACAAAGATA
GGAAATACCTCCGCGTGCGCGGAGAAGAG	CCACGCTGGTTAACCGCCTGACCGTGGATGGT
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GGTTGCGCGGTGGTGAGCGTGTGGCGCAGCTT
GGAAATACCTCCGCGTGCGCGGAGAAGAG	CGTGGGTGTAGGTGGTCTACCTGAAAGGCGGT
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GAGTGATGGTGTTACAGCCGGGCGCATTTGCT
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GCACACGCCTTACCGCCACCCCTCACACCCAT
GGAAATACCTCCGCGTGCGCGGAGAAGAG	CACTTCATGATGATGTTCGCGGCGCGAGTCTG
GGAAATACCTCCGCGTGCGCGGAGAAGAG	ATGGTGATAAGTGGCGTGTAGCCCATGGGCTA
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GCAGCGATGTGCGCTAGAGCGCGGTGAAGCTT
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GGTGGGCTGCCTTAAACGCCTTCGAGTTGAAC
GGAAATACCTCCGCGTGCGCGGAGAAGAG	ACGCTTAGGCGTGGTCTGGGTGGACATTCCTG
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GCCTTCTTAGCAAAGTGCACCTTCACCAAGCC
GGAAATACCTCCGCGTGCGCGGAGAAGAG	AGCTCCATGAGGTAGGCGGATTCCGGTATCTC
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GCCATGTAGTCGGCTAGGGCTGTGGTGAGCTC
GGAAATACCTCCGCGTGCGCGGAGAAGAG	CCCTTCTTGTGGACACGATTCCCGCTCTACCG
AGAAATACCTCCGCGTGCGCGGAGAAGAG

>NZ_CP014634|1|1|1536901-1538758|CRT
CTTCATACCTCCGCGTGCGCGGAGAAGAG	CCCGTAGTCGTGGAGGCTATGCACTATGGCCC
GGAAATACCTCCGCGTGCGCGGAGAAGAG	CGCTACAGCTTACAGGCTTCACCACCCGTATT
GGAAATACCTCCGCGTGCGCGGAGAAGAG	ACACGGCCCCATCTTCCGAGCGGCGGGCCGTG
GGAAATACCTCCGCGTGCGCGGAGAAGAG	AGTCGGCCATGGTGACCCTAACGCTGGTTGTG
GGAAATACCTCCGCGTGCGCGGAGAAGAG	TTGTCCAATCTATTGGTTCCCCATGCCATTTA
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GCGCCTGGAGTTAAACACCTTGGACCGTAATG
GGAAATACCTCCGCGTGCGCGGAGAAGAG	CGGCTCGTGGCCTACGTCTTCGATGATGAGGG
GGAAATACCTCCGCGTGCGCGGAGAAGAG	AACATCATCAACGGCCTGATTAATGGCATTAA
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GGTGCCCGCGTGCTAGGCATGAAGGTGCCGGC
GGAAATACCTCCGCGTGCGCGGAGAAGAG	TGTTCTTCCGCCAGGCAGAAGACAACAAGGGT
GGAAATACCTCCGCGTGCGCGGAGAAGAG	TGGTACTGGGAGCACATGCCGGGCGGCGAGCC
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GTATCCGCCACGGTGCGCGGCTATTCAACCCC
GGAAATACCTCCGCGTGCGCGGAGAAGAG	AAGCGCGGGGGCCGGTAGTCAGCTTCCTGGTA
GGAAATACCTCCGCGTGCGCGGAGAAGAG	CACGAACAAACATCAAAGGGGTGAAAAAGCCG
GGAAATACCTCCGCGTGCGCGGAGAAGAG	CTTCGTCGAAAGCTATGACCGAGGATTCATA
GGAAATACCTCCGCGTGCGCGGAGAAGAG	AAACACCAGGCCTATCACCTGATACAAAGATA
GGAAATACCTCCGCGTGCGCGGAGAAGAG	CCACGCTGGTTAACCGCCTGACCGTGGATGGT
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GGTTGCGCGGTGGTGAGCGTGTGGCGCAGCTT
GGAAATACCTCCGCGTGCGCGGAGAAGAG	CGTGGGTGTAGGTGGTCTACCTGAAAGGCGGT
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GAGTGATGGTGTTACAGCCGGGCGCATTTGCT
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GCACACGCCTTACCGCCACCCCTCACACCCAT
GGAAATACCTCCGCGTGCGCGGAGAAGAG	CACTTCATGATGATGTTCGCGGCGCGAGTCTG
GGAAATACCTCCGCGTGCGCGGAGAAGAG	ATGGTGATAAGTGGCGTGTAGCCCATGGGCTA
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GCAGCGATGTGCGCTAGAGCGCGGTGAAGCTT
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GGTGGGCTGCCTTAAACGCCTTCGAGTTGAAC
GGAAATACCTCCGCGTGCGCGGAGAAGAG	ACGCTTAGGCGTGGTCTGGGTGGACATTCCTG
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GCCTTCTTAGCAAAGTGCACCTTCACCAAGCC
GGAAATACCTCCGCGTGCGCGGAGAAGAG	AGCTCCATGAGGTAGGCGGATTCCGGTATCTC
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GCCATGTAGTCGGCTAGGGCTGTGGTGAGCTC
GGAAATACCTCCGCGTGCGCGGAGAAGAG	CCCTTCTTGTGGACACGATTCCCGCTCTACCG
AGAAATACCTCCGCGTGCGCGGAGAAGAG

>NZ_CP014634|1|1|1536962-1538758|PILER-CR
GGAAATACCTCCGCGTGCGCGGAGAAGAG	CGCTACAGCTTACAGGCTTCACCACCCGTATT
GGAAATACCTCCGCGTGCGCGGAGAAGAG	ACACGGCCCCATCTTCCGAGCGGCGGGCCGTG
GGAAATACCTCCGCGTGCGCGGAGAAGAG	AGTCGGCCATGGTGACCCTAACGCTGGTTGTG
GGAAATACCTCCGCGTGCGCGGAGAAGAG	TTGTCCAATCTATTGGTTCCCCATGCCATTTA
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GCGCCTGGAGTTAAACACCTTGGACCGTAATG
GGAAATACCTCCGCGTGCGCGGAGAAGAG	CGGCTCGTGGCCTACGTCTTCGATGATGAGGG
GGAAATACCTCCGCGTGCGCGGAGAAGAG	AACATCATCAACGGCCTGATTAATGGCATTAA
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GGTGCCCGCGTGCTAGGCATGAAGGTGCCGGC
GGAAATACCTCCGCGTGCGCGGAGAAGAG	TGTTCTTCCGCCAGGCAGAAGACAACAAGGGT
GGAAATACCTCCGCGTGCGCGGAGAAGAG	TGGTACTGGGAGCACATGCCGGGCGGCGAGCC
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GTATCCGCCACGGTGCGCGGCTATTCAACCCC
GGAAATACCTCCGCGTGCGCGGAGAAGAG	AAGCGCGGGGGCCGGTAGTCAGCTTCCTGGTA
GGAAATACCTCCGCGTGCGCGGAGAAGAG	CACGAACAAACATCAAAGGGGTGAAAAAGCCG
GGAAATACCTCCGCGTGCGCGGAGAAGAG	CTTCGTCGAAAGCTATGACCGAGGATTCATA
GGAAATACCTCCGCGTGCGCGGAGAAGAG	AAACACCAGGCCTATCACCTGATACAAAGATA
GGAAATACCTCCGCGTGCGCGGAGAAGAG	CCACGCTGGTTAACCGCCTGACCGTGGATGGT
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GGTTGCGCGGTGGTGAGCGTGTGGCGCAGCTT
GGAAATACCTCCGCGTGCGCGGAGAAGAG	CGTGGGTGTAGGTGGTCTACCTGAAAGGCGGT
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GAGTGATGGTGTTACAGCCGGGCGCATTTGCT
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GCACACGCCTTACCGCCACCCCTCACACCCAT
GGAAATACCTCCGCGTGCGCGGAGAAGAG	CACTTCATGATGATGTTCGCGGCGCGAGTCTG
GGAAATACCTCCGCGTGCGCGGAGAAGAG	ATGGTGATAAGTGGCGTGTAGCCCATGGGCTA
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GCAGCGATGTGCGCTAGAGCGCGGTGAAGCTT
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GGTGGGCTGCCTTAAACGCCTTCGAGTTGAAC
GGAAATACCTCCGCGTGCGCGGAGAAGAG	ACGCTTAGGCGTGGTCTGGGTGGACATTCCTG
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GCCTTCTTAGCAAAGTGCACCTTCACCAAGCC
GGAAATACCTCCGCGTGCGCGGAGAAGAG	AGCTCCATGAGGTAGGCGGATTCCGGTATCTC
GGAAATACCTCCGCGTGCGCGGAGAAGAG	GCCATGTAGTCGGCTAGGGCTGTGGTGAGCTC
GGAAATACCTCCGCGTGCGCGGAGAAGAG	CCCTTCTTGTGGACACGATTCCCGCTCTACCG
AGAAATACCTCCGCGTGCGCGGAGAAGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014634.1\|WP_062036601.1\|1526919_1528479_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225420
NZ_CP014634.1\|WP_049147286.1\|1543749_1544064_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
NZ_CP014634.1\|WP_141740985.1\|1532636_1532753_-\|HAD-hydrolase-like-protein	unknown	unknown	gnl\|CDD\|379086
NZ_CP014634.1\|WP_062036611.1\|1534227_1534860_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014634.1\|WP_082787652.1\|1552892_1554476_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224699
NZ_CP014634.1\|WP_062036621.1\|1544996_1547624_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP014634.1\|WP_062036617.1\|1541071_1542127_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|366166
NZ_CP014634.1\|WP_062036603.1\|1528453_1529104_-\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|225167
NZ_CP014634.1\|WP_062036609.1\|1533276_1533930_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014634.1\|WP_062036605.1\|1529133_1531650_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014634.1\|WP_082787718.1\|1525258_1525807_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377662
NZ_CP014634.1\|WP_141740984.1\|1532920_1533271_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014634.1\|WP_158510268.1\|1550875_1552390_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cls000721_cas8e_CAS-I-E	gnl\|CDD\|378189
NZ_CP014634.1\|WP_061925339.1\|1548459_1549164_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP014634.1\|WP_062036613.1\|1535239_1535575_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014634.1\|WP_062039272.1\|1532338_1532596_+\|plasmid-replication-protein	unknown	unknown	gnl\|CDD\|153418
NZ_CP014634.1\|WP_061925336.1\|1549156_1550221_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP014634.1\|WP_061925333.1\|1550248_1550860_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0096_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP014634.1\|WP_062036619.1\|1544064_1544997_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP014634.1\|WP_082787651.1\|1547631_1548315_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|187858

Protein	Function_ID	Function_description	E-value
NZ_CP014634.1\|WP_062036601.1\|1526919_1528479_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	2.20114e-51
NZ_CP014634.1\|WP_141740985.1\|1532636_1532753_-\|HAD-hydrolase-like-protein	gnl\|CDD\|379086	pfam13242, Hydrolase_like, HAD-hyrolase-like.	0.00894568
NZ_CP014634.1\|WP_062036621.1\|1544996_1547624_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.12523e-55
NZ_CP014634.1\|WP_082787652.1\|1552892_1554476_-\|hypothetical-protein	gnl\|CDD\|224699	COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and metabolism].	1.04478e-76
NZ_CP014634.1\|WP_062036619.1\|1544064_1544997_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.65196e-71
NZ_CP014634.1\|WP_061925333.1\|1550248_1550860_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	5.41678e-09
NZ_CP014634.1\|WP_062036617.1\|1541071_1542127_-\|alpha/beta-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	1.326e-17
NZ_CP014634.1\|WP_062036603.1\|1528453_1529104_-\|MOSC-domain-containing-protein	gnl\|CDD\|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	8.61167e-57
NZ_CP014634.1\|WP_061925336.1\|1549156_1550221_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.0085e-93
NZ_CP014634.1\|WP_082787718.1\|1525258_1525807_-\|hypothetical-protein	gnl\|CDD\|377662	pfam06475, Glycolipid_bind, Putative glycolipid-binding. This family has a novel fold known as a spiral beta-roll, consisting of a 15-stranded beta sheet wrapped around a single alpha helix. It forms dimers. It has some structural similarity to the E. coli lipoprotein localization factors LolA and LolB. Its structure suggests that it may have a role in glycolipid binding. Its genomic context supports a role in glycolipid metabolism.	1.03379e-35
NZ_CP014634.1\|WP_049147286.1\|1543749_1544064_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	1.68075e-31
NZ_CP014634.1\|WP_158510268.1\|1550875_1552390_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	4.86472e-13
NZ_CP014634.1\|WP_062039272.1\|1532338_1532596_+\|plasmid-replication-protein	gnl\|CDD\|153418	cd07377, WHTH_GntR, Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is presumed to result in a conformational change that regulates the DNA-binding affinity of the repressor. The GntR-like proteins bind as dimers, where each monomer recognizes a half-site of 2-fold symmetric DNA sequences.	0.0011996
NZ_CP014634.1\|WP_061925339.1\|1548459_1549164_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.27213e-26
NZ_CP014634.1\|WP_082787651.1\|1547631_1548315_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	1.3952e-35

>NZ_CP014634.1|WP_062036613.1|1535239_1535575_+|hypothetical-protein
MNGRFVEFDPAAELHAAHSEFLDSLALLDTPIERGLAYFCSAKRSQFHFDGNKRTARLMPSGMLMFAGYSGLNIPNARHREFKIALDELFSTDDATALMDFPYDCLEESSG
>NZ_CP014634.1|WP_062036611.1|1534227_1534860_-|hypothetical-protein
MDTQIQRRSLIAFYFGTKVATANVTSEQAIHGVARRAYADLQRTLRGFGTHQSRSELKRSTIASIQSFVDNLATIDSQASFDAQHDHWCRTTCDKFAHHEHGSRPFSFHYGQAQKWLNMTLKYLAVLDHPDVQRLYPYLHVPVDQYVYKEAASAGVTRPVAPNAWSTLTSEKYIDYQHRLRQMVESTGKYTCPLDWEAAVWIDRTSTTTP
>NZ_CP014634.1|WP_062036609.1|1533276_1533930_-|hypothetical-protein
MNRVTLLTVASLITAGIAPAASAETVEQAEKTPVWSEEQFDRSLKEITPEEKKQLELISSVGEHIDYDEEGNLKSDLNDDQLRSDYGFEDKDVSFFHSVLAEDESIVQHQENEPKIVTTYDHKLGHISNNDLKVGAAATLTAAAMEGPAALEAAFFAWGAVTGGPIGAAIAAAAGVLGAAYFIDLAAKITGAVVQGKGITWYSKWGFPPITAEIEDD
>NZ_CP014634.1|WP_141740984.1|1532920_1533271_-|hypothetical-protein
MDKDPKFIRFPESLWAFVTIFPSDIIEKHGVEHFFNSGYLWIYSILGAILFGISMIMGEKAVSPWMHRVRSIFLFAATIAITAFFPSLVGRIVVAFLAICYFFWPNNHIAFRRAAA
>NZ_CP014634.1|WP_141740985.1|1532636_1532753_-|HAD-hydrolase-like-protein
MIEDSIVIGDNVDTDGALARAIGADFLLFHARQDGKWA
>NZ_CP014634.1|WP_062039272.1|1532338_1532596_+|plasmid-replication-protein
MGRRGGKKAEERWKTDPEGEYVQVRRTALEETNIKRATGGRATARQIANYFDDTLLQTGKYPSIPDTMREFGVSRPTVKRALKNA
>NZ_CP014634.1|WP_062036605.1|1529133_1531650_-|hypothetical-protein
MNAETLCLETTAIEQSSYLEQAPRLSLDPKTRILDIALPDLMEHELKQPQWRVESHFIDRPHSVRVFEAGERLRVGIPGPFKSIQVTLMDGEEPLAPEFNFTGISSDAPFIIHDQSTLLAPQGTLEDATPLAIWAGWEFGPLPQRVEVPQREPVDIDKQVFFEWDFSVKTLTNAQGLDGEPIYTHSPKVTLHQEGEWRLDLVYAPVDGEQEEISEQTLGTGVAEAFPSDLYEDPWVGRYEVSLYHEDTLVDVRFISMAEGLHMRAKNEGPRGTDFRFIDALGKHSAFGYLLASPPKKPIVLDKKARTFQETEVSRREVVASEAGYELEFDVIPEALFTRVKRIGLEPTIHYEKPVILAGQLDQDAQFSVHSPRPLPLAKFVTIDSRQKIKELARTSRTTQPVRNLSVPNGALVSAVRKQASCELFLMWSTLSYEDYLAELPEKERAAHLSRSMERRVLEYEASASSSLIYAALATVRKSPLASRGLIGEGIEIEQNLEEPVDLVGWAWPLANPTVAPTRLEPNEAGFEAPELEGTLLVDVRELQASSNLAAPARPSSASLVVGTDAAEPALASKEWTPLELWDAFRSLHVLSQRSPNPRLQAMFDSIIDNLRLDPAAAVQALGQSGVSVNQQARSLVRTRLFHMDVASDNPATDNYPGLLGAVASDAALPEKLATARTSGVDSLTRPMLLAAATTPSPSPEVDDLTSEAARIVALRECFANNGPLDALGTVEKLRKDATALTSIVQEAGVDMSVSHTLIALSAFGSGNTADELNAAAWMPYISYAFALASRAVAHGAIPENALLKEDMPMLADVMPLAPRLFFYDLVTAEALFRDRDM
>NZ_CP014634.1|WP_062036603.1|1528453_1529104_-|MOSC-domain-containing-protein
MKVISTNVAVRRPEPHGRHEYTGIDKQPRPFLDLEIPGPNYGDGSGVVGDSIGDHAHHGGAEKAVYAYAREELDYWEGTLNRVLRDGYFGENLTTEGISWPNMLINQQIQVGECVLEVSIPRTPCATFSGWMDEPGWLKSFTERGDCGSYLRIIEPGRITSGDEITLIGRPDHDITMGMAFAAKMGDKELARRVVDAGCLAAVHHDQLVKRLQPRG
>NZ_CP014634.1|WP_062036601.1|1526919_1528479_+|helix-turn-helix-domain-containing-protein
MNNWSENQLRELLAELELRGGDSTTVEVKTAQGGIPDSLPQTLCAFANMPSGGLIILGVNEKEGFIVTGIENPSEMEAALASQARHAITPPVTVHTDSVAIDGTHVVIAEVTGLPIIDKPAIYRGEAYLRMADGDYRMSASELRMMDVAKLHAEEAVSYDTTIVEGTSLADLDSDVVQDFLVQARKKNRRLSGLTQDEDVLRALAVTTATGELTLAGLYALGFYPQGHFPSLAVTVAQRLPNGSKHGRVLGLETFEGPVPVLLNSVMGWVRQRLAAVRRYREDGSMVEVPELPLPAIREAVANALVHRDLGPNTLGAGKSIDVRLLPDKMVISSPGGLRDLTVEQLKSRDLARQEINQRLYRLCRYLKADDGSFVIEGEGGGVQLMLDAAREQGLPEPDLIDSGVQFTVKMWRPDTRGEARIWEPLRKEESGTGPERRVDAPVTLERLGVNAPRVAEALRTAAQPLSIGEIETATNLTRAQVRYALKSLVKARFVRMDGTRGSQATTYEWLANRGAAGA
>NZ_CP014634.1|WP_082787718.1|1525258_1525807_-|hypothetical-protein
MRNEAAVHFLGAGLTASGVQYGDGYEATWELRAAENWVTERVSVNVEGDGWGRSLELFRSEQGVWSAETNEEGAQPEDLPSPGIVQSADLKAALDCDLGLCPLTNTMPIRRLTLLETQVPKTQLIMAWIDMPSLQVIASDQYYSSVDAETVRYKSGTRGVDVELEVDGDGVVVHYPDLARRV
>NZ_CP014634.1|WP_062036617.1|1541071_1542127_-|alpha/beta-hydrolase
MALVGKRVLKVAGLIVTAIVALAAAGAGGWAWYTTTYHSRLVRSLEKAGYQEHRVSVDHVKLNVGVSEPRDGSPIVLIHGQASGWRQYGYALRDLSKDRQVYAIDVPGHGKSERLESYRAVEVADVLSRYIETIGQPVVLSGHSSGGQLAALIAARHPELVSFLVLEDPPLFATELPEARNTWNYQDLAVSTHEFLSSGETDWQAYQWRSQKMWQYFGDSAQGFIGDGLAYHSRHPGAPIALWTMPPEMNEAQVYIMDYDPAFGDAFFTGLWNEGFDQEATLAAIQAPVTYIHCQARYDGEILQAAASDEDAARAMDSLPAGAVKVEADSGHNFHVEKRKEFVEILLAGVG
>NZ_CP014634.1|WP_049147286.1|1543749_1544064_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MFLVITTTSLPDHMHGYLSRFLSEVDTGVYVGNVSRRVRDNLWRRLSNAIADGSLTMINEDRTREQGFAVNTMGPRRRTIIDMDGLLLACTFSREHTQNRTETN
>NZ_CP014634.1|WP_062036619.1|1544064_1544997_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MAYSEDAITFSTIPADHQVRLEDRVSFAYVERAAIRQDRTGVVAYSVVDNSELEQRIQLPVGGLAVLMLGPGTSISAAAATSCTRSGTTIMFTGGGGVPAYTHATPLTSSARWAIAQAALVSNEAHQRKAAIKLYQRQLGIEEIADAPSISIMRGLEGRVMKQTYQTQAKKHRIKNFRRNTANDDPVNQGLNLANSMLYGCAASACAAIGVNPALGIIHRGNARSLLFDLADLYKPTISIPLAFACANEEDPLPALRKQLRREIHRKNLLVDMLEVLTEVLTPHLPSRDDDRLVSGRGDEVAGHTQYGRR
>NZ_CP014634.1|WP_062036621.1|1544996_1547624_-|CRISPR-associated-helicase/endonuclease-Cas3
MPATHSTFSSVWAKQHSLEESYPLLAHMCDAASMAGQLFDHWLRPGLQGYLREELGPHAREIVMWLVGTHDIGKANPFFQGQLLTHARQRPEERKIWSSVRNRIVENEELGFKLPPRALRGLHDVAAFRRHEQASASYLLGSLTVDASATQAWRCIPAMGHHGRFDTPNFGGDRTGTKEALWNTALASNGWNTAQKVLDHALREACGVTVFPDEVPTSAMILISGLTVVADRLVSAHEWVKQSQARCQTAELDLTQPKEWILTQAEPALARIREQLGIYSDWPSAEDALEAILQGYEPRPAQREAMTDPDGLFTIMSATGSGKTEAAILRHAQRKERMLFLLPTMATSNALMKRVQRIFSSTQNTAALAHGMATIEDFYSRPVTTFRDSNPLEDVGGLVPAEFVRSGMERMLASITVGTVDQALKAALPMKWTHVILLALANAHVIIDEVHTLDPYQAQLLKPLMQWLGTVRARVTLLSATLSQEQCNSLACTYTGYPLETNIDFPSILSHNSSSYTATPLDSTPYTLTYDITIANPSQIDAHVNWVRRMRAEYPIARIGVICNRVDWAQEISRRLNEAGEDVLLLHAAMTAGHRQAAADTLLRTIGPHGNGEGICVVGTQAIEASLDIDLDLLSTDLCPSASLIQRAGRVWRRRDPQRKHRLPGRDHMHLHIVAHQNYEHRENLPYMEALLNRTQRWLNSHNGRIEFPVECQDFVNTTSITLTNINDDQDIDAFAQDSRKHMAASNIQSNLEAVLKEDVRLSELTKLTEGTTALEDLRTRYVEGETVRALVLDDAGTIPGAITSIDLELTKPTQEDLKRILRSSINLRQGSFPPEDPRFLSNPWETSLLQYFRIVDLSDNYDPALGLIYGKAHS
>NZ_CP014634.1|WP_082787651.1|1547631_1548315_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MKNMITTRYLTKAPAHALLSVAANSARRVSPASLNSPTFRHRAVMGLFPAFDDANPRSAAEILFRLETPAGQAPYFLIQSATEPTVSSCPDIVTKQVELQAPPTGTSVSFRISLNAIRRETFTNASGKRSYKVKPIPLDHEDTERTTFGPWLAQKLSPALDAVEVTNHRRAVLKDPKAEKGRMTLQIDAVDGIAVVRDTAALVSILTTGIGREKAYGCGLLSIRALS
>NZ_CP014634.1|WP_061925339.1|1548459_1549164_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MPSSTYIRLAGPLQSWAGLAVSGNFVRTEPRPTLSALRGLLAASLGAKRGQWPTWIDDVHFTLREDKTPKYVDDFHTIGDREDEFTFRRRLAIMQQMKATSVKQLKFTPAVGATSISRRTYLAESEFIVRATLEGHTEEIDQAFASPVFSVYLGRKAFPATFPFYLGTGPAEMLSLIPALAPNASSKATVRIFEPSLGSGVSPESMSVPAVATRTDWLKGIKELSLHRHSTIQR
>NZ_CP014634.1|WP_061925336.1|1549156_1550221_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSRHLTINILSSIPFSNLNRDDTGVPKRTMHGGVLRALHSSQSIKRGVRLRYEDASGNISIRSGKLADEIVTKAVELNPELDQKAALKEAKKIIGTLTKATASEGESDRSTWLSGEELLTAATKIAGNQESEDSGFINGTKTGSLAIAAFGRMFANAPTSNTEAAISVSPAITTHAATIDTDYFSTVDDIRERNNDSGATFLGVSQYTSGIFYRTVTIDKVQLKESWTGFDSEDAAQNLSELLRAIVYGQPRGKENSTAPYTLPAVVFAEEQRARVAYDFEQPVTPQGDGGFLVPSIEALAEQYQQARFFDPANFGPVEVLSGTHKDLDGKLGHLSPVSLDDFIIQVVEWILDA
>NZ_CP014634.1|WP_061925333.1|1550248_1550860_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MNHTQSTPEWQPLLTWLTQSVRNYHDKPTSHSGSEWRRTRAFLRRGNSQSTEHYAYPFIFPLLPADASPTTRTVALRLAALVAEFDAVPHIDSQETGFRSLGQWCNLISRKLAPEQETLDPRHPDAVASRLVSLHTQNVDEAITTIRRIAALAGNTKDTPPLPVYDLFRIFFRWGNGFTESSQRVRRSVLQNYYSGFSTSASS
>NZ_CP014634.1|WP_158510268.1|1550875_1552390_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MRDALLRAHKHDFDITSSQPGFHFSSQVRLLAGITAVVLRHEAKTPAELLNLGLSEAAVDKALEELSAGAYLHDAQFPFMQRPAVNTSNPKDKATYVGPGTHPVKKLSPAMPPNESEDFANLLTANQERLSLEDAVMWLVTYHHLSVAGNNAYCGDKCVSGSPAMRFVGTENSATEVLWHGQSLLETLLMAIPQSWVKGTGLPAWADRTCAYSRHDGIVHPLWSATWTSNSPATAWEASELVGVRTGGVPPEWFLTEMGSKDQQKDWWTLRNQKDPFYLYINNGKELKLQRLDLGKDATALAINWAAQNKTAEFEKASSSHILPPTAEARLVFIRHRMEGTASSPNIRASDIFFPRDEEWAHDTNPGVQADIRLGANCIDKLHSTVIRPFRRENANERAGGKVPLVLDFLESSRGDVSEAFWRNMSHNFSLLLKECRSAKSEFIASPELRTGLHTASMAAFDSVTQPHFGQEPARIAHVRAGVEYWVKRHIKDFVAEDPDDPTT
>NZ_CP014634.1|WP_082787652.1|1552892_1554476_-|hypothetical-protein
MRNFSRALRVSVAAVATTALTTGLVAPAHAAASGPKNIIYMIGDGMGYGHIASNNLYESGQSKYLVEGAFGPDTAKELEGESVQAFEDFNRLSMTTFPHGGSYDPAKAWSDHEYIKQGPTDSAAAGTAMATGSKVDNGTLGVSSYGHEMENLSERAIREGKSAGVVTSVPFDHATPAAFAAHNKNRNNYLEIGDSMINSDLSVIMGAGHPKYNDDAQKVAAGSEDYSYISKENLAALRDGSKGWEFTDNTAGFESLAAGNAEEGKKYFGLAPVATTLQQNRSGDAEAKEPGTDPKNDVVDLPTMTNGALNALGQDEDGFSLMIEGGAIDWSGHANQTGRDIEEVQDFNAAVDAAIDWVEKNSSWEETLLIVTADHETGYLSGKDETDAWKPQTGTKGTAPTHEWYSTNHTNQVVPFFFKGAGSEDIQAKVSGTDPVRGEYIDNTTVAKLALDEWWFNTAEDDTNNPGDTDNKPSNDGSSDGSSSAGAGLAGAGVMALIFGIITAAAQALGLVKFDFKALQDLIKQFA

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Crispr_ID: NZ_CP014634_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014634_2

2266965-2267053

Orphan

Consensus_repeat	Method
TTTGTTGCGGCGCCGTCGGCAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014634_2

>merge|NZ_CP014634|2|2266965-2267053|CRISPRCasFinder
TTTGTTGCGGCGCCGTCGGCAGCCGGCGCGGTTGCGGTGGTGCCGGTGGTGGTGGCGGCAGCCGGGTTTGTTACGGCGCCGTCGGCAGC

>NZ_CP014634|2|2|2266965-2267053|CRISPRCasFinder
TTTGTTGCGGCGCCGTCGGCAGC	CGGCGCGGTTGCGGTGGTGCCGGTGGTGGTGGCGGCAGCCGGG
TTTGTTACGGCGCCGTCGGCAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014634.1\|WP_062038055.1\|2264851_2265250_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP014634.1\|WP_062039420.1\|2254811_2255237_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014634.1\|WP_061923817.1\|2272047_2272695_+\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234784
NZ_CP014634.1\|WP_158510276.1\|2265310_2266303_+\|DUF3039-domain-containing-protein	unknown	unknown	gnl\|CDD\|378609
NZ_CP014634.1\|WP_061923808.1\|2275724_2276861_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225415
NZ_CP014634.1\|WP_062038052.1\|2264487_2264790_-\|YrhK-family-protein	unknown	unknown	gnl\|CDD\|372928
NZ_CP014634.1\|WP_062038043.1\|2260416_2261889_-\|DUF3375-domain-containing-protein	unknown	unknown	gnl\|CDD\|371764
NZ_CP014634.1\|WP_062038040.1\|2259769_2260420_-\|DUF4194-domain-containing-protein	unknown	unknown	gnl\|CDD\|372745
NZ_CP014634.1\|WP_062038073.1\|2270627_2272037_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP014634.1\|WP_062038046.1\|2262031_2262451_-\|organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649
NZ_CP014634.1\|WP_062038037.1\|2256408_2259777_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|227250
NZ_CP014634.1\|WP_062038076.1\|2278638_2280252_+\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|223740
NZ_CP014634.1\|WP_062038067.1\|2268817_2269753_+\|sugar-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225263
NZ_CP014634.1\|WP_062038064.1\|2267242_2268598_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|367570
NZ_CP014634.1\|WP_070456102.1\|2276993_2278580_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173853
NZ_CP014634.1\|WP_061923810.1\|2274626_2275553_+\|PRC-and-DUF2382-domain-containing-protein	unknown	unknown	gnl\|CDD\|378207
NZ_CP014634.1\|WP_062038049.1\|2262634_2263873_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014634.1\|WP_141748351.1\|2269896_2270607_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|350157
NZ_CP014634.1\|WP_062038033.1\|2255285_2256422_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227261
NZ_CP014634.1\|WP_061923814.1\|2272722_2274300_+\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092

Protein	Function_ID	Function_description	E-value
NZ_CP014634.1\|WP_062038055.1\|2264851_2265250_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	6.78813e-11
NZ_CP014634.1\|WP_141748351.1\|2269896_2270607_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|350157	cd09006, PNP_EcPNPI-like, purine nucleoside phosphorylases similar to Escherichia coli PNP-I (DeoD) and Trichomonas vaginalis PNP. Escherichia coli purine nucleoside phosphorylase (PNP)-I (or DeoD) accepts both 6-oxo and 6-amino purine nucleosides as substrates. Trichomonas vaginalis PNP has broad substrate specificity, having phosphorolytic catalytic activity with adenosine, inosine, and guanosine (with adenosine as the preferred substrate). This subfamily belongs to the nucleoside phosphorylase-I (NP-I) family, whose members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	7.18038e-140
NZ_CP014634.1\|WP_061923817.1\|2272047_2272695_+\|deoxyribose-phosphate-aldolase	gnl\|CDD\|234784	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional.	2.00508e-105
NZ_CP014634.1\|WP_158510276.1\|2265310_2266303_+\|DUF3039-domain-containing-protein	gnl\|CDD\|378609	pfam11238, DUF3039, Protein of unknown function (DUF3039). This family of proteins with unknown function appears to be restricted to Actinobacteria.	2.71664e-10
NZ_CP014634.1\|WP_061923808.1\|2275724_2276861_+\|hypothetical-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	6.36607e-49
NZ_CP014634.1\|WP_062038052.1\|2264487_2264790_-\|YrhK-family-protein	gnl\|CDD\|372928	pfam14145, YrhK, YrhK-like protein. The YrhK-like protein family includes the B. subtilis YrhK protein, which is functionally uncharacterized. Its expression is under the control of the motility sigma factor sigma-D. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 60 amino acids in length.	1.18089e-13
NZ_CP014634.1\|WP_062038043.1\|2260416_2261889_-\|DUF3375-domain-containing-protein	gnl\|CDD\|371764	pfam11855, DUF3375, Protein of unknown function (DUF3375). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.	6.74394e-146
NZ_CP014634.1\|WP_062038040.1\|2259769_2260420_-\|DUF4194-domain-containing-protein	gnl\|CDD\|372745	pfam13835, DUF4194, Domain of unknown function (DUF4194).	3.78815e-35
NZ_CP014634.1\|WP_062038073.1\|2270627_2272037_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.3497e-14
NZ_CP014634.1\|WP_062038046.1\|2262031_2262451_-\|organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	1.63677e-63
NZ_CP014634.1\|WP_062038037.1\|2256408_2259777_-\|AAA-family-ATPase	gnl\|CDD\|227250	COG4913, COG4913, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP014634.1\|WP_062038076.1\|2278638_2280252_+\|mechanosensitive-ion-channel	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	4.32475e-36
NZ_CP014634.1\|WP_062038067.1\|2268817_2269753_+\|sugar-binding-transcriptional-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	2.50206e-95
NZ_CP014634.1\|WP_062038064.1\|2267242_2268598_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|367570	pfam03583, LIP, Secretory lipase. These lipases are expressed and secreted during the infection cycle of these pathogens. In particular, C. albicans has a large number of different lipases, possibly reflecting broad lipolytic activity, which may contribute to the persistence and virulence of C. albicans in human tissue.	2.06007e-41
NZ_CP014634.1\|WP_070456102.1\|2276993_2278580_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173853	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel/dipeptide/oligopeptide transport systems, which function in the import of nickel and peptides, and other closely related proteins. The oligopeptide-binding protein OppA is a periplasmic component of an ATP-binding cassette (ABC) transport system OppABCDEF consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Similar to the ABC-type dipeptide and oligopeptide import systems, nickel transporter is comprised of five subunits NikABCDE: the two pore-forming integral inner membrane proteins NikB and NikC; the two inner membrane-associated proteins with ATPase activity NikD and NikE; and the periplasmic nickel binding NikA, which is the initial nickel receptor that controls the chemotactic response away from nickel. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand binding domains of ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	2.30401e-109
NZ_CP014634.1\|WP_061923810.1\|2274626_2275553_+\|PRC-and-DUF2382-domain-containing-protein	gnl\|CDD\|378207	pfam09557, DUF2382, Domain of unknown function (DUF2382). This entry describes an uncharacterized domain, sometimes found in association with a PRC-barrel domain pfam05239 which is also found in rRNA processing protein RimM and in a photosynthetic reaction centre complex protein). This domain is found in proteins from Bacillus subtilis, Deinococcus radiodurans, Nostoc sp. PCC 7120, Myxococcus xanthus, and several other species. The function is not known.	2.61231e-36
NZ_CP014634.1\|WP_062038033.1\|2255285_2256422_-\|hypothetical-protein	gnl\|CDD\|227261	COG4924, COG4924, Uncharacterized protein conserved in bacteria [Function unknown].	1.10598e-59
NZ_CP014634.1\|WP_061923814.1\|2272722_2274300_+\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0

>NZ_CP014634.1|WP_158510276.1|2265310_2266303_+|DUF3039-domain-containing-protein
MLKEDLRDGWQEPFVMRAVGDERYEDLLPLSELAHPIVRKTADSFTDTAAADNYVGAIGSAVSIRLLEIKQSQWRGGVWTDPETGVRWLVAAGLAKGGHEDNDDFYKFVEREEHNGTITRLLPTEDDKRLLKLETAARIRTEWELNIQREVLAALQEIRGGGAARFDVNHPLARLGRFATIELYVELVRGEDRIATDEVIVEFFPQRGVNFSEELYWQLIVRVLASVYPPAQGWDRAGDEFHQMEESGSLDKRISELETHDVKRTLAEVELGAVAHFTHREHLASKIIDGTGVRSLCGVYFVPAQDADSLPTCPQCDVLYAALPKLPLGD
>NZ_CP014634.1|WP_062038055.1|2264851_2265250_+|helix-turn-helix-domain-containing-protein
MRILQDEKLTPQQLEEFDALAKASESPVVRTLMQNIAEVLRNGGNLLSAEEDAALSPNEAAKQLGMSRTFLNRLLDQGKIPYFKVGTHRRIRVVDLALFEQQRDSDRIELAQRLARQQQTTRAVDATIADLL
>NZ_CP014634.1|WP_062038052.1|2264487_2264790_-|YrhK-family-protein
MTLPVRWESVKQSDATPHHNEFVIRNRFETASIAVDVSISVVFIAGSLLFLFSLTKVGTVFFLLDSLAMAARAAIRLHRRMYLQKIGADREVTNEEGSYY
>NZ_CP014634.1|WP_062038049.1|2262634_2263873_-|hypothetical-protein
MSDSPSSALPQNPGASDAELQVILHGDSLMFLGSESALTRLDESSPQEKLARVAPKVAHNLSKSARTLSQFQENSGRYLKLSKDSAQFLKENKVAAEKIRAGVLRVGDLPGAKGNAGSIVKHLKFENTALLATPAAPLAVAAILEESAAQAQMDQVLDYLEEVSENVQKLIQQRKTEVNGDINGFTEAIEEAFSLLQKTGEVGAVTWSKVDDLDVDLKRLQGQIIGELDEVAKEIAKKATNPKKAYQAFTEAEENATYWIFQLARVMVLQNQLNILELNRVAASEPDHLEQHRQGIAEAKAKREERIINALNAIADKANDSATFKDLQLVLRLGGNTKAAEAGNRLVHQLNEFATVAGIDAYTRESIESTGWSDAIKRTAERAGDGVVDTYNEALGKIPWRIRIERTTPRSN
>NZ_CP014634.1|WP_062038046.1|2262031_2262451_-|organic-hydroperoxide-resistance-protein
MDAVYSTEALSTGAGRDGRAVVKDSDLDFTMTAPKEMGGSGEGANPEQLFAAGYAACYHSALKAVAKDKGVDAENSTVGARVNLGKNDEGFYLGVDLEVTIPGVEDAKAQELADAAHQMCPYSKATRGNIEVNVGVAQD
>NZ_CP014634.1|WP_062038043.1|2260416_2261889_-|DUF3375-domain-containing-protein
MSVEARALSLRRLMHDSAAIRLLAADNAPVILALIAEYFPRGTRARPAAEVYELMVTDFEVIASEFPMPRTPQNYCNDWVKAGWLVRKSGRSSRGETLEPSEEALSALEAIERWEQPVTTVTASRVESISSALQRLARDTNEDIASRVASLEAERARIDREIEKAQLGQFERLTAAETEERVQDVLNMAMAVPSDFARVRHDLEALNHQLRRQLLDPEGYRGDVLEEIFNGVDHIAESDAGRSFQGFYSLLMDRERSVWLDQWIEQVLDSEAGQDVAPERRRQLRRLFRDMEETSFEVNQTMTGLARSLRHYVSSEQFAEDRRMIELLREARGMAIDAAQGSELKAFHRMDTPLQRIGMSIHSVSRIRLANPGREVVEEAPVAYQPGEDDAHALYELVRESEIDFEELHEAIRQTVSDSGPCTIAQVLQAHPPTQGLASVVGLVHIADQHPLPAVRESQEKITWTEEDGAVRAAQIPTMYFDHTTVEELQ
>NZ_CP014634.1|WP_062038040.1|2259769_2260420_-|DUF4194-domain-containing-protein
MTTANSPRVDSTHEPPLWEHDKGTLTYHSRRALVQLLQGPLIRVQKEPVLWSAIISDEENLRARLHEVFLELVIDETEGFAFTRMVEEDSLSIPQVLRTDKLKHIDTAILLNLRQELGLALPGERVIVDVEDLRESIGYVRAVDNRDEAGFTKRFNAAIKRIQNDYSLLSTTETEGRLEVSPVLRQLFDASTVTAIRDEYARLARAEDTEEDTSDD
>NZ_CP014634.1|WP_062038037.1|2256408_2259777_-|AAA-family-ATPase
MTKHTELYPGQYRISRIQLINWGTFHGYFSIPVARKGFLITGGSGSGKSTLLDAMSAVLVPQNHVKFNAASQQDLGRHNGRNLVSYVRGAWRQQENTQTGEITPEYLRESATNSVVALTYDNGQGKQHTLIAIFRLNGGENSVGQIKKLYGLVPGDEDIDKLSPLLTRSLDSRKIRALYKGPGAFFTPTYATFADRFRKRLGIKNVEGQLLLHRTQSAKSLSSLDQLFRDYMLDVPDTFTRADEAVEQFEDLRQAYLRVEDVKAQIDTLGPLPQLHSQRSSAEADKEKAEAMSEALPAVRARLVTEELDFRIRALTAQLSEAQSQSETLNAEVAHLDDAERLAAVAVTQLSAGELDALSAKIETADKEIEHRTKEFQRLAAAAGAWTDDYEFSPHGFAELQATAKLRIADFKVDFANLINEQQEAGVAARDAATACAALDSELRSFSSRRTNIDKALVELRAQLARDTGYGESELPFAGELIDISPQQAEWEPVIQKLLHGFAATLLVPEAARDTINQWVNSRNVGTRLEYRTIPEFASPQASAHSPRQLIHKLEFQDHAMAHWIRQHISRRFNYECVDSVAELDHVTTTPAVTRDGLESRPKDKDGSTRFIKDDRKRFSGTTWYRVGSTNTAKIELLRAQLTQAKATARATAKQVQNLNRKMDVLRSQRDKAQQVLETSFPDIDTASAEAHRQDLQEQYDSLASSPEAQALAAAHEQAKAKLKAARARLNAAQKNLGNVEGELERSTERRRSIGIVPAIEDQDIAKAVEDALHKGKRKLTIDDIDARRDEVQASLQNTARTATRRIEDANAKIVSVLHTYLAQWPAEAADLEPQASFAGEGIEKLKFLRADRLADFRARFLELLNGSTVRNLSHLTTDLRRARSDIERRMEFINKSLERSPFNGERTLRIDVKDARGQVVQDFQRDLDAATSHSLGEFGSDDTEAALARYHALDKILSRLGSSQPEDLRWRNVVLDTRRHVSFIGRELYPDGTTANTYQDSASLSGGQAQKLVFFCLAAALRFRLAEPDQDVPTYGSIILDEAFDRADPTFTRTAMSVFTSFGFHMILATPFKLIQTLSPYVDGTIVVKYDEPIINGRPRARTGYSLIDASTYQDPDYAQP
>NZ_CP014634.1|WP_062038033.1|2255285_2256422_-|hypothetical-protein
MRSPKDLQAHASKYLRNHFAEALADPDSVRVDWPLHPPTATAAARDIDATQGFIRAWQRWPHQEDVIYESRNWSRAGLGTNNIPARITINGAERIATAAGLNLEYARARERAHSIAAVFPDSPDFAHTVRRSYTQWKDLSAYDLKCLEPCLTWLRANPDSGEWERAVPVKGVDGKWIGTHRRLLLTLLAPFGITDLGLRRSDARIRLRYLNHAPALSDIEIPLAHAATLFPHTPPRVLIVENKQTFLALPTLPDTSPPTVALLGAGTAAHQLHALDWLNLIDITYWGDLDAAGFAILNAVRAHFPHTTSLLMDTATVTEFQHLAVPDPGDGSATLTHLTTEEQRAYRLLFTAGRLRIEQERIPFAHVNAVIHATLAAA
>NZ_CP014634.1|WP_062039420.1|2254811_2255237_+|hypothetical-protein
MDGDVTVLLVCAGLVLVMVLYWTYYIRCVRRQPRSEKWYDDVDFVGAESDGVLFIYPYCSLIMGAGGAMGLVASANPPEFVYTVLKVPLVAAFVVGVIGFTGAVGVPLPWPFVPRWVVDIRKAKRARRRERRQARKREKEE
>NZ_CP014634.1|WP_062038064.1|2267242_2268598_-|alpha/beta-fold-hydrolase
MQKSLRTYLPLLASACLTFSICPAAVAADAPNTELPESALIEKALEDPVADESPAEASDIATDAKELDDAAPSTEAPSDNNVGDEYKAFYHDPVELEGSEPGQLFRSDAVRNPANTLGITNVGPYKAQRILYSSTNRKGEKIPVSGIVIEPKAEWTGNGPRPLIAFAPGTQGVADRCAPSRKIADGVGDYEQLFFEQYLKKGYAVVVTDYEGLGTPGMHTYMDRVSQAHAVLDSARAARQLEGWDINADNPVIINGYSQGGGAAAAAAELYDDYAPELNVKLATVGAAPADLTLLPPALDGTLYFLFESFALLGLSSSYDEDLYSHLNEEGKTVLQNATNSCTLGLTSFAGKKIEDVSIDGKNVDEFIAEAPYDKILADQHIGYDAPSIPVVITHGRGDDVIPFSTAEQLAKEWSERGGNVTFIPNDAGSHVAGTIPHIKESLKAIESALQ
>NZ_CP014634.1|WP_062038067.1|2268817_2269753_+|sugar-binding-transcriptional-regulator
MIDARDSQALDVAKLYYNSHLSQAEVAQCLGISRPTVSKLLQHAHDQGFVVISINDPRERSDELVRELKEHFALADARVVTTPRGGNLMQDLGAAGAALLEELVHDGSSVGVSWGQTMSAVAEHLRQLPLEGVKVVQLKGGHSHTRRSTKDFATLQGFARAFNAETFMLPLPVIFDSAETKQWVEKDRHIAHIVEMGSHVDVAVFTVGAAARESLALNLGYLSEEETQLILERAVGDVCSRFFDTEGRVAVPEVDARTVSITFDALAARPARVLVAGGPEKAGAIRVVLEQGLATHLVIDHNTAQRVLTGE
>NZ_CP014634.1|WP_141748351.1|2269896_2270607_+|purine-nucleoside-phosphorylase
MATPHINPKGAEIAETILLPGDPLRAKFIADTFLEDVVQFNEVRNILGFTGTYQGHRVSVMGTGMGMPSIGIYSWELIHNYGVKNLIRVGSIGALQEDIDLHDVIVASAASTDSNFLSQYNLPGQYSPTASWKLLKGLVDEAEKQDAHIHVGNVLSSDVFYNFDQTVNDRWAHMGVLGVEMESAALYATAAEAGVNALGLFTVSDNIAADTHLSAEERQTAFHTMMKLALPLAGLD
>NZ_CP014634.1|WP_062038073.1|2270627_2272037_+|MFS-transporter
MSKATNAKPSGVVKRGVDAALNPKAAVPVLLFCFVFSLVVDNGFKTMTMPIAQGLGIDDNTASLQASLAGVIIGIGAVVYAALADSVSIRKLMITGVLLVAVGSIIGFVGSGSWPIVLAARLIQTTGLAAAETLYVIYVTKHLSEADQKTYLGFSTAAFQAGLLIGALTSGFISTYISWTAMFLVPLILVLCIPAIHKMVPEDEAVESNLDVLGLILVGLFATALTMFMQAFNWKWLLLAVVAVIGFTLHIRSAKAPVVRPEFFTNGRYVWAITLVFFIYSTQLGYIFLLPFAANELHGMSIDRASLLMIPGYICAILVGVFSGKIGKVLNSRQTIYTAIVMIVGSLAVAALFVQEHVAVLAVTIVTFASGFALMYAPLVNTALQNIPAAKSGIAIGFYNLTINIAIPLGIAYTAKLIDVSDGFNLALGVLTAVGACGAVLYVVADRIMARKARDVSRAKSVDASETLA
>NZ_CP014634.1|WP_061923817.1|2272047_2272695_+|deoxyribose-phosphate-aldolase
MSSNVASMIDHTLLKPEATAQDVAALIEEAQRLGTYSVCISPSQLPVEVPEGLHVATVVGFPSGAVKPEIKAAEAGLAVDNGAEEIDMVINIALAIEGRFDALEEEIRTVRSACQGKVLKVIIESAALSDDAIVAACRAAEAASADFVKTSTGFHPAGGASVHAVKLMADTVGGRLGVKASGGIRTGADAQAMIDAGATRLGLSSSAAVLADLEN
>NZ_CP014634.1|WP_061923814.1|2272722_2274300_+|phospho-sugar-mutase
MSLVEYARTWAEHDPDPLTRDEVLGWIEAGDEAALSGAFAGPLAFGTAGLRAAVGAGESRMNRAVVIRTTYGLVSWLKQQVENPVVVIGCDARYGSADFYQDAAEVISAAGGRALVLPKQNPTPLTAYSVRELGADAGIMVTASHNPPADNGYKVYLGGRVATGDANGVQLVSPADAEISAAIAAAPFANEVPRSTDNIEEVDTRAQYLERAAKLVGESTSAKIALTAMHGVGAKLGTALLEKVGFEVSLVPEQAEPDPDFPTVSFPNPEEPGALDLGKAHAEKIGADILIAYDPDADRCAAAIPTHGAQGGVVWRQLTGDETGALLGDYLARRGVGGTFANSLVSSRLLGRIAAHYGLPHEETLTGFKWIARTHDLSFGYEEAIGFCPDPQAVRDKDGVATSVVLASLASECKDAGITLQDRLAEIYSTVGRLATAPLTFRVEDLSLITRGMEKITSTPPTQLAGSEIAKAEKFAQGMKLYTVDDDRVIVRPSGTEPKLKCYLESPDPARLDAIAEDLRVFFDM
>NZ_CP014634.1|WP_061923810.1|2274626_2275553_+|PRC-and-DUF2382-domain-containing-protein
MTNQNARDIKDLFNKTAYDVNGDKLGSVKEVFVDDNSGQPTFVEVSHGLFGMSESIVPMRGHKFAGEDDLILAFDKERIKDAPSVDTDKALSANDQNEIFRHYGVDTMKDEQAYTGGRHDVSDKNKAGLAAGAGAGAGVGAAAGAEHAAGAEHKEHAHKDHVAGTEAADHTKNAGHTHADVDGRDSLVRSEEQLDVNKERVETGEVRLRKYVVTETENVEVPVTREEVRVERTPISEEEAASLRGKNNLTDDEASVTLHEERVRVEKDTVPVEKVELNKKQVTDTERVSEDLRKERIETEGVDGKTTK
>NZ_CP014634.1|WP_061923808.1|2275724_2276861_+|hypothetical-protein
MNVEVDPLIEALYYWSDVSGVLLMGIIGGTLARQRGYDIVGFFFIAMFSALGGGMIRDVLINRGTVAAMSQPEYLYLAFAGALIARFFYFKGRTWDYIQSHGDAIVSALWAATGTVKALTYGLPLIPCVMMGVFTATGGSMIRDISMGREPAVFGDNQPTVIPAVACAAVVLVADSFDHLATGMLVGPVVSFILTLFGIWAGWRIPARQEWAPLNDTAAQVMLLARKAENKGRAVGRRLEPTKVRSWRHQQMEKALQRRIEKQVQNGRLRAAATSDATELLESFTDTMEQLHGEAIPATDSDSAAKNEEALSQESKGILQEIGVDLSGDSYEDYDEDEPLLDPEMLKEQRENLDIVLSDEKLTDELVEHLVQRYKKQN
>NZ_CP014634.1|WP_070456102.1|2276993_2278580_+|ABC-transporter-substrate-binding-protein
MLKRVLSVSAAATLVLALSACVPPDQTPDISGVDFITTDGAEPQNPLLPADINDVPAATIVNLIYSGLVYLNEEGEAEYDVAQKITQTSPTEYDVVLREDAKFSDGSSVRARDFVDSWNAAVQNNMLSSYFFKPILGFGEGEPTMRGLKVTGDRTFHIELAEPTANFVKRLGHSVFFPMHPSAEKGYDAYGMNPIGNGPYRLARWDRDEKINLIPNAEYVGPRKSRNEGLEFRFYETEEESYAALQRGELDLVTDVPITHIHRFEEELDGRSFNETSAMFSFITIPANDPMFRGEAGALRRRAISMSFDRTRIAHEVLDDTVTPVTCFATQKYCPEMGMIPGQEVLVYNPEKARELWAKADAISPWTGPFLLGYNADGGHAEWVDAVTKQVSETLGIEAYGRAFSTFKKYRQAVTDRQMRGSFRSSWQAAYPSEVNFLEPVFASSSLLNESGFNNPEFDRLLKEANSELDKKVQEQKLLAAQSILLHDLPALPLWESNVVGGYDTDIARPHFSWKGKPFYFELTRDKG
>NZ_CP014634.1|WP_062038076.1|2278638_2280252_+|mechanosensitive-ion-channel
MNLVGYFFYRMWQVGIDHVLPLVALLLLGMLVPRLGRLAIRVLESRLEEGEESTKARLALGGALVYVLQAVAYFLLVLAALSNVGVPALGAAIPATVVSAALGFGAQKIIGDFLAGFFILSEKQFGVGDYVSFEGTTGVEGTVVALTLRTTKVRTPTGEVVMVPNGSAGVITNFSQDWSRAVVDLSVPLHEGETLEEITSQVRTISQQAIKDPAIAGDVAGELEILSATGIVEPTVAGQPWQVKYRVLVQVNPSRQWAVERAIRSALLSAFWDHYNLPSNATGVFPAGPSSSVEKPGIERTPETAAEKGLGAAVAASASTDGVAARASAHNADNDDTALEEVAKAKDHGPGKPASADVEKEEKPATGIWRADTPSSKFQYVWTAGGRVRSSTTTLLAALAITGLLIFASWNPEDAGTGWLNPAYWSQRDAATSEAPAPVAPGEEADSSAETPPAPGTTTPTEAAEPTTSAESSADYGSSEDGSSEDGSRADSRSGSSGADSDAATTVPAETATQSAVPSAEPTAAEESAAAGGSDGA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP014634_1	1.12\|1537601\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1537601-1537632	32	NZ_CP014634.1	2085716-2085747	0	1.0
NZ_CP014634_1	1.18\|1537966\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1537966-1537997	32	NZ_CP014634.1	2091032-2091063	0	1.0
NZ_CP014634_1	1.29\|1538637\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1538637-1538668	32	NZ_CP014634.1	2097319-2097350	0	1.0
NZ_CP014634_1	1.28\|1538576\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1538576-1538607	32	NZ_CP014634.1	2097733-2097764	1	0.969

1. spacer 1.12|1537601|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to position: 2085716-2085747, mismatch: 0, identity: 1.0

gtatccgccacggtgcgcggctattcaacccc	CRISPR spacer
gtatccgccacggtgcgcggctattcaacccc	Protospacer
********************************

2. spacer 1.18|1537966|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to position: 2091032-2091063, mismatch: 0, identity: 1.0

ggttgcgcggtggtgagcgtgtggcgcagctt	CRISPR spacer
ggttgcgcggtggtgagcgtgtggcgcagctt	Protospacer
********************************

3. spacer 1.29|1538637|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to position: 2097319-2097350, mismatch: 0, identity: 1.0

gccatgtagtcggctagggctgtggtgagctc	CRISPR spacer
gccatgtagtcggctagggctgtggtgagctc	Protospacer
********************************

4. spacer 1.28|1538576|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to position: 2097733-2097764, mismatch: 1, identity: 0.969

agctccatgaggtaggcggattccggtatctc	CRISPR spacer
agctccatgaggtatgcggattccggtatctc	Protospacer
************** *****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014634_1	1.11\|1537540\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1537540-1537571	32	NC_048789	Corynebacterium phage Stiles, complete genome	20472-20503	2	0.938
NZ_CP014634_1	1.18\|1537966\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1537966-1537997	32	NC_019959	Mycobacterium sp. JS623 plasmid pMYCSM03, complete sequence	101798-101829	5	0.844
NZ_CP014634_1	1.3\|1537052\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1537052-1537083	32	NC_013856	Azospirillum sp. B510 plasmid pAB510b, complete sequence	42401-42432	7	0.781
NZ_CP014634_1	1.18\|1537966\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1537966-1537997	32	MT498037	Streptomyces phage Dryad, complete genome	32668-32699	7	0.781
NZ_CP014634_1	1.1\|1536930\|32\|NZ_CP014634\|CRISPRCasFinder,CRT	1536930-1536961	32	MK359354	Mycobacterium phage PinkPlastic, complete genome	6501-6532	8	0.75
NZ_CP014634_1	1.1\|1536930\|32\|NZ_CP014634\|CRISPRCasFinder,CRT	1536930-1536961	32	KT626047	Mycobacterium phage Dynamix, complete genome	6743-6774	8	0.75
NZ_CP014634_1	1.1\|1536930\|32\|NZ_CP014634\|CRISPRCasFinder,CRT	1536930-1536961	32	MK359331	Mycobacterium phage Rajelicia, complete genome	6641-6672	8	0.75
NZ_CP014634_1	1.1\|1536930\|32\|NZ_CP014634\|CRISPRCasFinder,CRT	1536930-1536961	32	MH744414	Mycobacterium phage Arcanine, complete genome	6612-6643	8	0.75
NZ_CP014634_1	1.1\|1536930\|32\|NZ_CP014634\|CRISPRCasFinder,CRT	1536930-1536961	32	MN119379	Mycobacterium phage Anglerfish, complete genome	6646-6677	8	0.75
NZ_CP014634_1	1.1\|1536930\|32\|NZ_CP014634\|CRISPRCasFinder,CRT	1536930-1536961	32	MG962372	Mycobacterium phage McGuire, complete genome	6739-6770	8	0.75
NZ_CP014634_1	1.1\|1536930\|32\|NZ_CP014634\|CRISPRCasFinder,CRT	1536930-1536961	32	MN444869	Mycobacterium phage DreamCatcher, complete genome	7386-7417	8	0.75
NZ_CP014634_1	1.1\|1536930\|32\|NZ_CP014634\|CRISPRCasFinder,CRT	1536930-1536961	32	MT310897	Mycobacterium phage Manatee, complete genome	6694-6725	8	0.75
NZ_CP014634_1	1.8\|1537357\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1537357-1537388	32	MT334653	Buttiauxella phage vB_ButM_GuL6, complete genome	67401-67432	8	0.75
NZ_CP014634_1	1.22\|1538210\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1538210-1538241	32	NZ_CP039965	Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence	346211-346242	8	0.75
NZ_CP014634_1	1.28\|1538576\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1538576-1538607	32	NZ_CP044330	Methylocystis rosea strain BRCS1 plasmid unnamed2, complete sequence	91749-91780	8	0.75
NZ_CP014634_1	1.28\|1538576\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1538576-1538607	32	NZ_CP034088	Methylocystis rosea strain GW6 plasmid pGW6_2, complete sequence	89409-89440	8	0.75
NZ_CP014634_1	1.4\|1537113\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1537113-1537144	32	NZ_CP029209	Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence	183915-183946	9	0.719
NZ_CP014634_1	1.7\|1537296\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1537296-1537327	32	NC_010811	Ralstonia phage RSL1, complete genome	23417-23448	9	0.719
NZ_CP014634_1	1.7\|1537296\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1537296-1537327	32	AB366653	Ralstonia phage RSL1 DNA, complete genome	23417-23448	9	0.719
NZ_CP014634_1	1.7\|1537296\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1537296-1537327	32	MT708548	Streptomyces phage Salutena, complete genome	17669-17700	9	0.719
NZ_CP014634_1	1.9\|1537418\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1537418-1537449	32	NZ_CP022370	Bosea sp. AS-1 plasmid unnamed1, complete sequence	141422-141453	9	0.719
NZ_CP014634_1	1.9\|1537418\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1537418-1537449	32	NZ_CP022371	Bosea sp. AS-1 plasmid unnamed2, complete sequence	57867-57898	9	0.719
NZ_CP014634_1	1.11\|1537540\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1537540-1537571	32	NZ_CP022992	Paraburkholderia aromaticivorans strain BN5 plasmid pBN2, complete sequence	56311-56342	9	0.719
NZ_CP014634_1	1.11\|1537540\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1537540-1537571	32	NZ_CP050104	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence	592710-592741	9	0.719
NZ_CP014634_1	1.11\|1537540\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1537540-1537571	32	NZ_CP025507	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence	293321-293352	9	0.719
NZ_CP014634_1	1.11\|1537540\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1537540-1537571	32	NZ_CP050109	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence	592710-592741	9	0.719
NZ_CP014634_1	1.11\|1537540\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1537540-1537571	32	NC_020062	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence	209090-209121	9	0.719
NZ_CP014634_1	1.11\|1537540\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1537540-1537571	32	NZ_CP030761	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence	1195927-1195958	9	0.719
NZ_CP014634_1	1.11\|1537540\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1537540-1537571	32	NZ_CP022666	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence	1031596-1031627	9	0.719
NZ_CP014634_1	1.11\|1537540\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1537540-1537571	32	NZ_CP050086	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence	628732-628763	9	0.719
NZ_CP014634_1	1.18\|1537966\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1537966-1537997	32	NZ_CP053574	Citrobacter sp. TSA-1 plasmid unnamed1, complete sequence	108021-108052	9	0.719
NZ_CP014634_1	1.20\|1538088\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1538088-1538119	32	NZ_CP021914	Sagittula sp. P11 plasmid unnamed1, complete sequence	24807-24838	9	0.719
NZ_CP014634_1	1.22\|1538210\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1538210-1538241	32	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1435145-1435176	9	0.719
NZ_CP014634_1	1.22\|1538210\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1538210-1538241	32	NZ_LR134456	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence	401536-401567	9	0.719
NZ_CP014634_1	1.22\|1538210\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1538210-1538241	32	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	1174625-1174656	9	0.719
NZ_CP014634_1	1.22\|1538210\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1538210-1538241	32	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	668286-668317	9	0.719
NZ_CP014634_1	1.22\|1538210\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1538210-1538241	32	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1435152-1435183	9	0.719
NZ_CP014634_1	1.22\|1538210\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1538210-1538241	32	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	1014554-1014585	9	0.719
NZ_CP014634_1	1.22\|1538210\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1538210-1538241	32	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1014500-1014531	9	0.719
NZ_CP014634_1	1.22\|1538210\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1538210-1538241	32	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	1352903-1352934	9	0.719
NZ_CP014634_1	1.22\|1538210\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1538210-1538241	32	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	1164533-1164564	9	0.719
NZ_CP014634_1	1.22\|1538210\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1538210-1538241	32	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	1298173-1298204	9	0.719
NZ_CP014634_1	1.27\|1538515\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1538515-1538546	32	MT939492	Xanthomonas phage Xoo-sp14, complete genome	204304-204335	9	0.719
NZ_CP014634_1	1.11\|1537540\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1537540-1537571	32	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	327368-327399	10	0.688
NZ_CP014634_1	1.11\|1537540\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1537540-1537571	32	NZ_CP053440	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence	290719-290750	10	0.688
NZ_CP014634_1	1.11\|1537540\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1537540-1537571	32	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	255216-255247	10	0.688
NZ_CP014634_1	1.11\|1537540\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1537540-1537571	32	NZ_CP048281	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence	345838-345869	10	0.688
NZ_CP014634_1	1.25\|1538393\|32\|NZ_CP014634\|CRISPRCasFinder,CRT,PILER-CR	1538393-1538424	32	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	726913-726944	10	0.688

1. spacer 1.11|1537540|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NC_048789 (Corynebacterium phage Stiles, complete genome) position: , mismatch: 2, identity: 0.938

tggtactgggagcacatgccgggcggcgagcc	CRISPR spacer
tggtactgggagcacatgcccggcggcgaacc	Protospacer
******************** ********.**

2. spacer 1.18|1537966|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NC_019959 (Mycobacterium sp. JS623 plasmid pMYCSM03, complete sequence) position: , mismatch: 5, identity: 0.844

ggttg--cgcggtggtgagcgtgtggcgcagctt	CRISPR spacer
--ttggtcgcggtggtgaggctgtggcgcagcgt	Protospacer
  ***  ************  *********** *

3. spacer 1.3|1537052|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 7, identity: 0.781

acacggccccatcttccgagcggcgggccgtg	CRISPR spacer
tgccggccccgtcttccgaccggcgggcctcg	Protospacer
   *******.******** ********* .*

4. spacer 1.18|1537966|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to MT498037 (Streptomyces phage Dryad, complete genome) position: , mismatch: 7, identity: 0.781

ggttgcgcggtggtgagcgtgtggcgcagctt	CRISPR spacer
ggacatccggttgtgagcgtgtggcgcagcgt	Protospacer
** ... **** ****************** *

5. spacer 1.1|1536930|32|NZ_CP014634|CRISPRCasFinder,CRT matches to MK359354 (Mycobacterium phage PinkPlastic, complete genome) position: , mismatch: 8, identity: 0.75

cccgtagtcgtggaggctatgcactatggccc	CRISPR spacer
cccgtagtcatcgaggctatgcatctggtgcc	Protospacer
*********.* ***********..  *  **

6. spacer 1.1|1536930|32|NZ_CP014634|CRISPRCasFinder,CRT matches to KT626047 (Mycobacterium phage Dynamix, complete genome) position: , mismatch: 8, identity: 0.75

cccgtagtcgtggaggctatgcactatggccc	CRISPR spacer
cccgtagtcatcgaggctatgcatctggtgcc	Protospacer
*********.* ***********..  *  **

7. spacer 1.1|1536930|32|NZ_CP014634|CRISPRCasFinder,CRT matches to MK359331 (Mycobacterium phage Rajelicia, complete genome) position: , mismatch: 8, identity: 0.75

cccgtagtcgtggaggctatgcactatggccc	CRISPR spacer
cccgtagtcatcgaggctatgcatctggtgcc	Protospacer
*********.* ***********..  *  **

8. spacer 1.1|1536930|32|NZ_CP014634|CRISPRCasFinder,CRT matches to MH744414 (Mycobacterium phage Arcanine, complete genome) position: , mismatch: 8, identity: 0.75

cccgtagtcgtggaggctatgcactatggccc	CRISPR spacer
cccgtagtcatcgaggctatgcatctggtgcc	Protospacer
*********.* ***********..  *  **

9. spacer 1.1|1536930|32|NZ_CP014634|CRISPRCasFinder,CRT matches to MN119379 (Mycobacterium phage Anglerfish, complete genome) position: , mismatch: 8, identity: 0.75

cccgtagtcgtggaggctatgcactatggccc	CRISPR spacer
cccgtagtcatcgaggctatgcatctggtgcc	Protospacer
*********.* ***********..  *  **

10. spacer 1.1|1536930|32|NZ_CP014634|CRISPRCasFinder,CRT matches to MG962372 (Mycobacterium phage McGuire, complete genome) position: , mismatch: 8, identity: 0.75

cccgtagtcgtggaggctatgcactatggccc	CRISPR spacer
cccgtagtcatcgaggctatgcatctggtgcc	Protospacer
*********.* ***********..  *  **

11. spacer 1.1|1536930|32|NZ_CP014634|CRISPRCasFinder,CRT matches to MN444869 (Mycobacterium phage DreamCatcher, complete genome) position: , mismatch: 8, identity: 0.75

cccgtagtcgtggaggctatgcactatggccc	CRISPR spacer
cccgtagtcatcgaggctatgcatctggtgcc	Protospacer
*********.* ***********..  *  **

12. spacer 1.1|1536930|32|NZ_CP014634|CRISPRCasFinder,CRT matches to MT310897 (Mycobacterium phage Manatee, complete genome) position: , mismatch: 8, identity: 0.75

cccgtagtcgtggaggctatgcactatggccc	CRISPR spacer
cccgtagtcatcgaggctatgcatctggtgcc	Protospacer
*********.* ***********..  *  **

13. spacer 1.8|1537357|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to MT334653 (Buttiauxella phage vB_ButM_GuL6, complete genome) position: , mismatch: 8, identity: 0.75

aacatcatcaacggcctgattaatggcattaa	CRISPR spacer
tatatcatcaaccgcctgattaaaggtttgca	Protospacer
 *.********* ********** **. *  *

14. spacer 1.22|1538210|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039965 (Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cacttcatgatgatgttcgcggcgcgagtctg-	CRISPR spacer
accttcatcatgatgatcgcggcgc-tgtcgac	Protospacer
  ****** ****** *********  *** .

15. spacer 1.28|1538576|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044330 (Methylocystis rosea strain BRCS1 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

agctccatgaggtaggcggattccggtatctc	CRISPR spacer
cttttcttgaggtatgccgattccggtatcgc	Protospacer
  .*.* ******* ** ************ *

16. spacer 1.28|1538576|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034088 (Methylocystis rosea strain GW6 plasmid pGW6_2, complete sequence) position: , mismatch: 8, identity: 0.75

agctccatgaggtaggcggattccggtatctc	CRISPR spacer
cttttcttgaggtatgccgattccggtatcgc	Protospacer
  .*.* ******* ** ************ *

17. spacer 1.4|1537113|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029209 (Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcggccatggtgaccctaacgctggttgtg	CRISPR spacer
cgtcggcaatggtgaccttaacgcccttggcc	Protospacer
 ****** *********.******.  * *.

18. spacer 1.7|1537296|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NC_010811 (Ralstonia phage RSL1, complete genome) position: , mismatch: 9, identity: 0.719

cggctcgtggcctacgtcttcgatgatgaggg	CRISPR spacer
actctcgtggcctacgtcttcgctgagagtga	Protospacer
   ******************* *** .. *.

19. spacer 1.7|1537296|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to AB366653 (Ralstonia phage RSL1 DNA, complete genome) position: , mismatch: 9, identity: 0.719

cggctcgtggcctacgtcttcgatgatgaggg	CRISPR spacer
actctcgtggcctacgtcttcgctgagagtga	Protospacer
   ******************* *** .. *.

20. spacer 1.7|1537296|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to MT708548 (Streptomyces phage Salutena, complete genome) position: , mismatch: 9, identity: 0.719

cggctcgtggcctacgtcttcgatgatgaggg	CRISPR spacer
ggagtacgggccgacgtcttcgatgacgaggc	Protospacer
 *. *   **** *************.****

21. spacer 1.9|1537418|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022370 (Bosea sp. AS-1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ggtgcccgcgtgctaggcatgaaggtgccggc	CRISPR spacer
atcccgcgcgtgcttggcatgaaggagcctgt	Protospacer
. . * ******** ********** *** *.

22. spacer 1.9|1537418|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022371 (Bosea sp. AS-1 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

ggtgcccgcgtgctaggcatgaaggtgccggc	CRISPR spacer
atcccgcgcgtgcttggcatgaaggagcctgt	Protospacer
. . * ******** ********** *** *.

23. spacer 1.11|1537540|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022992 (Paraburkholderia aromaticivorans strain BN5 plasmid pBN2, complete sequence) position: , mismatch: 9, identity: 0.719

tggtactgggagcacatgccgggcggcgagcc	CRISPR spacer
gtggagcaagagcccatgccgggctgcgagcc	Protospacer
  * * ...**** ********** *******

24. spacer 1.11|1537540|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050104 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence) position: , mismatch: 9, identity: 0.719

tggtactgggagcacatgccgggcggcgagcc	CRISPR spacer
cactgcgtcgagcccatgccggccggcgagcc	Protospacer
.. *.*   **** ******** *********

25. spacer 1.11|1537540|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025507 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence) position: , mismatch: 9, identity: 0.719

tggtactgggagcacatgccgggcggcgagcc	CRISPR spacer
cactgcgtcgagcccatgccggccggcgagcc	Protospacer
.. *.*   **** ******** *********

26. spacer 1.11|1537540|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050109 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence) position: , mismatch: 9, identity: 0.719

tggtactgggagcacatgccgggcggcgagcc	CRISPR spacer
cactgcgtcgagcccatgccggccggcgagcc	Protospacer
.. *.*   **** ******** *********

27. spacer 1.11|1537540|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NC_020062 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence) position: , mismatch: 9, identity: 0.719

tggtactgggagcacatgccgggcggcgagcc	CRISPR spacer
gcctatccggagcaaatgtcgggcggcgagca	Protospacer
   **.. ****** ***.************

28. spacer 1.11|1537540|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030761 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tggtactgggagcacatgccgggcggcgagcc	CRISPR spacer
cactgcgtcgagcccatgccggccggcgagcc	Protospacer
.. *.*   **** ******** *********

29. spacer 1.11|1537540|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022666 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence) position: , mismatch: 9, identity: 0.719

tggtactgggagcacatgccgggcggcgagcc	CRISPR spacer
cactgcgtcgagcccatgccggccggcgagcc	Protospacer
.. *.*   **** ******** *********

30. spacer 1.11|1537540|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050086 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence) position: , mismatch: 9, identity: 0.719

tggtactgggagcacatgccgggcggcgagcc	CRISPR spacer
cactgcgtcgagcccatgccggccggcgagcc	Protospacer
.. *.*   **** ******** *********

31. spacer 1.18|1537966|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053574 (Citrobacter sp. TSA-1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ggttgcgcggtggtgagcgtgtggcgcagctt	CRISPR spacer
ggttgcgcggtactgagcgtgtgatggcgaaa	Protospacer
***********. **********..*  *

32. spacer 1.20|1538088|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021914 (Sagittula sp. P11 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gagtgatggtgttacagccgggcgcatttgct	CRISPR spacer
ccagaaaggtgtgacagccgcgcgcatttgcc	Protospacer
  . .* ***** ******* **********.

33. spacer 1.22|1538210|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

----cacttcatgatgatgttcgcggcgcgagtctg	CRISPR spacer
gcggcat----tgatgatgttcgaggcgcgcgtcga	Protospacer
    **.    ************ ****** *** .

34. spacer 1.22|1538210|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134456 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence) position: , mismatch: 9, identity: 0.719

cacttcatgatgatgttcgcggcgcgagtctg	CRISPR spacer
agctgcatgatgatgttcgcgacgccgctcgt	Protospacer
 .** ****************.*** . **

35. spacer 1.22|1538210|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

----cacttcatgatgatgttcgcggcgcgagtctg	CRISPR spacer
gcggcat----tgatgatgttcgaggcgcgcgtcga	Protospacer
    **.    ************ ****** *** .

36. spacer 1.22|1538210|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

----cacttcatgatgatgttcgcggcgcgagtctg	CRISPR spacer
gcggcat----tgatgatgttcgaggcgcgcgtcga	Protospacer
    **.    ************ ****** *** .

37. spacer 1.22|1538210|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

----cacttcatgatgatgttcgcggcgcgagtctg	CRISPR spacer
gcggcat----tgatgatgttcgaggcgcgcgtcga	Protospacer
    **.    ************ ****** *** .

38. spacer 1.22|1538210|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

----cacttcatgatgatgttcgcggcgcgagtctg	CRISPR spacer
gcggcat----tgatgatgttcgaggcgcgcgtcga	Protospacer
    **.    ************ ****** *** .

39. spacer 1.22|1538210|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

----cacttcatgatgatgttcgcggcgcgagtctg	CRISPR spacer
gcggcat----tgatgatgttcgaggcgcgcgtcga	Protospacer
    **.    ************ ****** *** .

40. spacer 1.22|1538210|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

----cacttcatgatgatgttcgcggcgcgagtctg	CRISPR spacer
gcggcat----tgatgatgttcgaggcgcgcgtcga	Protospacer
    **.    ************ ****** *** .

41. spacer 1.22|1538210|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

----cacttcatgatgatgttcgcggcgcgagtctg	CRISPR spacer
gcggcat----tgatgatgttcgaggcgcgcgtcga	Protospacer
    **.    ************ ****** *** .

42. spacer 1.22|1538210|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

----cacttcatgatgatgttcgcggcgcgagtctg	CRISPR spacer
gcggcat----tgatgatgttcgaggcgcgcgtcga	Protospacer
    **.    ************ ****** *** .

43. spacer 1.27|1538515|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to MT939492 (Xanthomonas phage Xoo-sp14, complete genome) position: , mismatch: 9, identity: 0.719

gccttcttagcaaagtgcaccttcaccaagcc	CRISPR spacer
tgcatgcaggcaaagtccaccttctccaagcc	Protospacer
  * * . .******* ******* *******

44. spacer 1.11|1537540|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 10, identity: 0.688

tggtactgggagcacatgccgggcggcgagcc	CRISPR spacer
caccgcgtcgagcccatgccggccggcgagcc	Protospacer
.. ..*   **** ******** *********

45. spacer 1.11|1537540|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053440 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence) position: , mismatch: 10, identity: 0.688

tggtactgggagcacatgccgggcggcgagcc	CRISPR spacer
caccgcgtcgagcccatgccggccggcgagcc	Protospacer
.. ..*   **** ******** *********

46. spacer 1.11|1537540|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tggtactgggagcacatgccgggcggcgagcc	CRISPR spacer
caccgcgtcgagcccatgccggccggcgagcc	Protospacer
.. ..*   **** ******** *********

47. spacer 1.11|1537540|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048281 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence) position: , mismatch: 10, identity: 0.688

tggtactgggagcacatgccgggcggcgagcc	CRISPR spacer
caccgcgtcgagcccatgccggccggcgagcc	Protospacer
.. ..*   **** ******** *********

48. spacer 1.25|1538393|32|NZ_CP014634|CRISPRCasFinder,CRT,PILER-CR matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 10, identity: 0.688

ggtgggctgccttaaacgccttcgagttgaac	CRISPR spacer
ctgcggcggccttgaacgccttcgagtcatag	Protospacer
    *** *****.*************.. *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

597281 : 670007

Shigella_phage(23.53%)

protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_145915029.1\|597281_598474_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.9e-25	31.1
WP_145915030.1\|598778_599237_-	hypothetical protein	NA	NA	NA	NA
WP_062035611.1\|599283_599862_-	hypothetical protein	NA	NA	NA	NA
WP_062035612.1\|600144_602079_+	SAM-dependent DNA methyltransferase	A0A220A2U5	Liberibacter_phage	2.1e-28	24.8
WP_096337133.1\|602573_603203_+	type I restriction endonuclease subunit S	NA	NA	NA	NA
WP_062035614.1\|603195_606285_+	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_062035615.1\|606405_606834_+	OsmC family protein	NA	NA	NA	NA
WP_062035616.1\|606947_607940_+	DUF1906 domain-containing protein	A0A2P1JXS5	Rhodococcus_phage	2.3e-31	38.4
WP_062035617.1\|607917_609000_-	hypothetical protein	NA	NA	NA	NA
WP_062035618.1\|609067_610720_-	cation acetate symporter	NA	NA	NA	NA
WP_062035619.1\|610723_611068_-	DUF485 domain-containing protein	NA	NA	NA	NA
WP_062035620.1\|611412_612255_-	aldo/keto reductase	NA	NA	NA	NA
WP_061921152.1\|612385_612742_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_082787620.1\|612955_614251_-	citrate synthase	NA	NA	NA	NA
WP_062035621.1\|614405_615536_+	phosphoserine transaminase	NA	NA	NA	NA
WP_062035622.1\|615745_617014_+	DUF3071 domain-containing protein	NA	NA	NA	NA
WP_062035623.1\|617062_617890_+	hypothetical protein	NA	NA	NA	NA
WP_061921143.1\|617850_618663_-	RNA methyltransferase	NA	NA	NA	NA
WP_062035624.1\|618668_620072_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	8.0e-30	26.6
WP_062035625.1\|620169_620820_-	DUF3027 domain-containing protein	NA	NA	NA	NA
WP_082778564.1\|620834_621698_+	glutamine cyclotransferase	NA	NA	NA	NA
WP_062035626.1\|621709_622315_+	DUF2771 domain-containing protein	NA	NA	NA	NA
WP_061921135.1\|622398_622779_-	cold shock domain-containing protein	Q9AZD3	Lactococcus_phage	7.5e-07	39.7
WP_062035627.1\|623152_623767_+	DUF3235 domain-containing protein	A0A1I9SA30	Rhodococcus_phage	3.0e-29	66.7
WP_061921131.1\|623964_624150_-	hypothetical protein	NA	NA	NA	NA
WP_062035628.1\|624216_626301_+	helicase-associated domain-containing protein	NA	NA	NA	NA
WP_062035629.1\|626372_628004_+	DEAD/DEAH box helicase	B2CRJ8	Acidianus_filamentous_virus	1.1e-17	24.2
WP_061921125.1\|628008_628647_+	DUF3239 domain-containing protein	NA	NA	NA	NA
WP_062035630.1\|628646_629771_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_062035631.1\|629751_630111_-	DUF2200 domain-containing protein	NA	NA	NA	NA
WP_101504640.1\|630194_631387_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.9e-25	31.1
WP_062035632.1\|637840_638596_-	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.8e-15	28.7
WP_062035633.1\|638592_639636_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_082787621.1\|639625_640633_-	iron chelate uptake ABC transporter family permease subunit	A0A2H4IY97	uncultured_Caudovirales_phage	2.7e-59	35.2
WP_062035635.1\|640699_641713_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_062035636.1\|641896_643282_-	M20 family metallopeptidase	NA	NA	NA	NA
WP_062035637.1\|643283_644933_-	AbgT family transporter	NA	NA	NA	NA
WP_062035638.1\|645148_646486_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_062035639.1\|647204_647561_-	DUF488 family protein	NA	NA	NA	NA
WP_061921111.1\|647589_648090_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.6e-36	51.3
WP_062035640.1\|648114_649017_-	ABC transporter permease	NA	NA	NA	NA
WP_062035641.1\|649017_649707_-	cell division ATP-binding protein FtsE	G9BWD6	Planktothrix_phage	7.9e-31	36.5
WP_062035642.1\|649751_650864_-	peptide chain release factor 2	NA	NA	NA	NA
WP_062035643.1\|650932_651760_+	inositol monophosphatase family protein	NA	NA	NA	NA
WP_062035644.1\|651752_652538_+	histidinol-phosphatase	NA	NA	NA	NA
WP_062035645.1\|652611_653811_-	hypothetical protein	NA	NA	NA	NA
WP_061921099.1\|654559_654901_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_062035646.1\|654973_656041_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_061921094.1\|656593_657550_+	DUF418 domain-containing protein	NA	NA	NA	NA
WP_061921092.1\|657552_658611_+\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_061925833.1\|660227_661793_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.0e-113	50.6
WP_061925830.1\|661962_662367_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_145915031.1\|663943_665136_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.9e-25	31.1
WP_005328806.1\|665474_666365_+	cation transporter	A0A1V0SED0	Indivirus	6.9e-11	33.6
WP_005324624.1\|666395_666578_+	hypothetical protein	NA	NA	NA	NA
WP_141740993.1\|666764_667064_-	hypothetical protein	NA	NA	NA	NA
WP_062035649.1\|667158_668502_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.3e-32	34.8
WP_145915029.1\|668815_670007_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.9e-25	31.1

DBSCAN-SWA_2

1299855 : 1424119

107

Planktothrix_phage(13.64%)

integrase,holin,transposase,protease,tRNA

attL 1367466:1367525|attR 1372478:1373800

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062036299.1\|1299855_1300704_+\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_062036301.1\|1300708_1301005_-	cysteine methyltransferase	NA	NA	NA	NA
WP_062036303.1\|1301005_1301800_-	VOC family protein	NA	NA	NA	NA
WP_062036305.1\|1301799_1302087_-	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
WP_145915040.1\|1302097_1303021_-	esterase	NA	NA	NA	NA
WP_062036309.1\|1303025_1303352_-	YbjQ family protein	NA	NA	NA	NA
WP_062036311.1\|1303362_1303716_-	DUF2218 domain-containing protein	NA	NA	NA	NA
WP_062036314.1\|1303741_1304452_-	LysE family translocator	NA	NA	NA	NA
WP_062036316.1\|1304473_1306249_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	4.5e-62	29.5
WP_062036318.1\|1306582_1308832_+\|holin	choline BCCT transporter BetT	A0A2I7QNT1	Vibrio_phage	3.0e-18	27.8
WP_062036320.1\|1308877_1310455_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_061919953.1\|1310581_1311127_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_062039233.1\|1311158_1311848_-	alpha-ketoglutarate-dependent dioxygenase AlkB	NA	NA	NA	NA
WP_062036322.1\|1311915_1312548_+	sugar O-acetyltransferase	NA	NA	NA	NA
WP_062036324.1\|1312548_1314783_+	ATP-dependent RNA helicase	A0A1V0SDF7	Indivirus	1.2e-27	27.8
WP_062039236.1\|1314766_1315552_-	TSUP family transporter	NA	NA	NA	NA
WP_062036326.1\|1315559_1316630_+	ammonia monooxygenase	NA	NA	NA	NA
WP_062036328.1\|1316684_1318346_-	DUF885 domain-containing protein	NA	NA	NA	NA
WP_062039239.1\|1318415_1318985_-	TIGR00730 family Rossman fold protein	A0A1G5S9X4	Enterococcus_phage	2.5e-14	35.3
WP_062036330.1\|1319081_1320143_+	ROK family transcriptional regulator	NA	NA	NA	NA
WP_062036332.1\|1320139_1320625_-	ferritin	NA	NA	NA	NA
WP_062036334.1\|1320873_1321692_-	HtaA domain-containing protein	NA	NA	NA	NA
WP_061919937.1\|1321795_1322443_-	biliverdin-producing heme oxygenase	Q58M64	Prochlorococcus_phage	8.8e-24	33.5
WP_082778529.1\|1322545_1324021_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	2.9e-107	50.5
WP_061919934.1\|1324041_1324557_-	phosphoribosyltransferase	NA	NA	NA	NA
WP_062036336.1\|1324600_1326004_-	AMP nucleosidase	NA	NA	NA	NA
WP_082787640.1\|1326323_1327301_+	triacylglycerol lipase	NA	NA	NA	NA
WP_061919930.1\|1327297_1327546_-	hypothetical protein	NA	NA	NA	NA
WP_062036338.1\|1327590_1328400_-	heme ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.8e-16	32.1
WP_061919926.1\|1328396_1329461_-	iron ABC transporter permease	NA	NA	NA	NA
WP_061919924.1\|1329444_1330497_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_061919922.1\|1330526_1332314_-	HtaA domain-containing protein	NA	NA	NA	NA
WP_145915041.1\|1332441_1332957_+	hypothetical protein	NA	NA	NA	NA
WP_062036340.1\|1332856_1333780_-	NAD-dependent protein deacetylase	A0A068EPD4	Bacillus_phage	6.7e-09	23.7
WP_061919918.1\|1333809_1334052_-	hypothetical protein	NA	NA	NA	NA
WP_062036342.1\|1334051_1335032_-	biotin synthase BioB	NA	NA	NA	NA
WP_062036344.1\|1335109_1336417_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_062036346.1\|1337676_1338198_+	hypothetical protein	NA	NA	NA	NA
WP_049062476.1\|1338449_1338674_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_062036348.1\|1338676_1339498_-	ABC transporter permease	NA	NA	NA	NA
WP_062036350.1\|1339497_1340349_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.1e-17	30.9
WP_049151471.1\|1340442_1340838_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_062036352.1\|1340935_1341424_+	hypothetical protein	NA	NA	NA	NA
WP_049192692.1\|1341521_1342352_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_062036354.1\|1342433_1343840_-	DUF5129 domain-containing protein	NA	NA	NA	NA
WP_005530578.1\|1343836_1344478_-	response regulator transcription factor	NA	NA	NA	NA
WP_062036356.1\|1344474_1345509_-	sensor histidine kinase	NA	NA	NA	NA
WP_062036358.1\|1345620_1346217_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	4.0e-23	38.5
WP_062036360.1\|1346200_1347412_+	ABC transporter permease	NA	NA	NA	NA
WP_062036362.1\|1347380_1348076_-	hypothetical protein	NA	NA	NA	NA
WP_062036364.1\|1348215_1349457_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	NA	NA	NA
WP_062036366.1\|1349453_1350101_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_082778677.1\|1350806_1351151_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_062036373.1\|1351147_1351894_+	hypothetical protein	NA	NA	NA	NA
WP_062039245.1\|1352453_1353122_-	response regulator transcription factor	NA	NA	NA	NA
WP_062036375.1\|1353639_1355214_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_062036377.1\|1355214_1355907_+	ATP-binding protein	NA	NA	NA	NA
WP_062036379.1\|1355954_1356284_+\|transposase	transposase	A0A2P1JR43	Mycobacterium_phage	3.7e-10	44.3
WP_141740971.1\|1356425_1356629_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_158510263.1\|1356693_1356876_+	hypothetical protein	NA	NA	NA	NA
WP_158510264.1\|1356886_1357438_+\|transposase	transposase	Q6H9S3	Enterobacteria_phage	1.1e-19	52.4
WP_141740970.1\|1357539_1357857_-	hypothetical protein	NA	NA	NA	NA
WP_141740969.1\|1357853_1358519_-	hypothetical protein	NA	NA	NA	NA
WP_062036381.1\|1358952_1360458_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_145915042.1\|1360458_1360863_-	hypothetical protein	NA	NA	NA	NA
WP_070497053.1\|1361401_1362514_-	hypothetical protein	NA	NA	NA	NA
WP_141740967.1\|1362506_1363673_-	hypothetical protein	NA	NA	NA	NA
WP_141740966.1\|1363716_1364499_-	hypothetical protein	NA	NA	NA	NA
WP_062036393.1\|1364560_1365214_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.7e-22	31.8
1367466:1367525	attL	NA	NA	NA	NA
WP_115021451.1\|1367525_1368741_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.3e-33	35.5
WP_062036397.1\|1368762_1369101_+	hypothetical protein	NA	NA	NA	NA
WP_062036399.1\|1369149_1370280_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	K4I413	Acidithiobacillus_phage	1.0e-38	32.9
WP_062034988.1\|1370286_1371054_+	ATP-binding protein	NA	NA	NA	NA
WP_158510265.1\|1371805_1372447_-	hypothetical protein	NA	NA	NA	NA
WP_115021451.1\|1372537_1373753_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.3e-33	35.5
WP_062036403.1\|1373910_1374480_-	hypothetical protein	NA	NA	NA	NA
1372478:1373800	attR	NA	NA	NA	NA
WP_082787644.1\|1375023_1375338_+	TIGR02391 family protein	NA	NA	NA	NA
WP_062039251.1\|1375671_1376052_-	hypothetical protein	NA	NA	NA	NA
WP_062036407.1\|1376648_1377482_-	hypothetical protein	NA	NA	NA	NA
WP_062036411.1\|1378018_1378483_-	hypothetical protein	NA	NA	NA	NA
WP_062036413.1\|1378587_1378989_-	hypothetical protein	NA	NA	NA	NA
WP_143339262.1\|1379979_1381710_-	hypothetical protein	NA	NA	NA	NA
WP_062036419.1\|1381739_1382816_-	hypothetical protein	NA	NA	NA	NA
WP_143339260.1\|1383846_1385040_+	AAA family ATPase	A0A1S5V1G7	Saudi_moumouvirus	1.7e-20	30.9
WP_062036428.1\|1386994_1387657_+	hypothetical protein	NA	NA	NA	NA
WP_062036429.1\|1388919_1389579_-	hypothetical protein	NA	NA	NA	NA
WP_049146586.1\|1389761_1390343_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_049146588.1\|1390339_1390723_+	cupin domain-containing protein	NA	NA	NA	NA
WP_049146591.1\|1390722_1391280_+	DUF4865 family protein	NA	NA	NA	NA
WP_034986964.1\|1392669_1393068_-	30S ribosomal protein S8	NA	NA	NA	NA
WP_005325331.1\|1393592_1394711_+	iron ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	2.0e-15	24.4
WP_005325330.1\|1394710_1395805_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_005291888.1\|1395801_1396638_+	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	6.9e-13	26.7
WP_005291889.1\|1396648_1397269_-	DedA family protein	NA	NA	NA	NA
WP_005291893.1\|1397460_1398477_-	iron-siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005325328.1\|1398542_1399487_-\|tRNA	methionyl-tRNA formyltransferase	NA	NA	NA	NA
WP_005325324.1\|1399546_1400551_+	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA
WP_062036431.1\|1400553_1411410_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	1.6e-45	25.4
WP_011274124.1\|1411510_1412929_-	lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein	NA	NA	NA	NA
WP_062036433.1\|1413008_1414757_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_005291902.1\|1414728_1416453_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_005291903.1\|1416546_1416777_-	MbtH family protein	NA	NA	NA	NA
WP_115021451.1\|1417526_1418742_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.3e-33	35.5
WP_034966322.1\|1419719_1420418_+	hypothetical protein	NA	NA	NA	NA
WP_080719550.1\|1420650_1421703_-\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	4.6e-30	37.1
WP_062036437.1\|1421894_1422206_-	hypothetical protein	NA	NA	NA	NA
WP_049152104.1\|1422910_1424119_+\|transposase	IS110 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP014634

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection