CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP014616	Sporosarcina psychrophila strain DSM 6497, complete genome	3 crisprs	csa3,cas3,DEDDh,WYL,RT,DinG,cas14j	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014616_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014616_1

146502-146612

Orphan

Consensus_repeat	Method
ATTGCTAGACCAATCATATATTTAGCCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014616_1

>merge|NZ_CP014616|1|146502-146612|CRISPRCasFinder
CATGCTAAACCAATCATATCCATTGCTAGACCAATCATATATTTAGCCAATCAATCATATCTGGCCCTAACCGATCATATCTATTGCTAGACCAATCATAAATTTAGCCAA

>NZ_CP014616|1|1|146502-146612|CRISPRCasFinder
CATGCTAAACCAATCATATCCATTGCTAG	ACCAATCATATATTTAGCCAATCAATCATATCTGGCCCTAACCGATCATATCT
ATTGCTAGACCAATCATAAATTTAGCCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014616.1\|WP_067204369.1\|148621_149281_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
NZ_CP014616.1\|WP_082786781.1\|153157_154207_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP014616.1\|WP_067204333.1\|139046_139997_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014616.1\|WP_067204348.1\|143132_143501_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
NZ_CP014616.1\|WP_067204357.1\|145251_146193_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224196
NZ_CP014616.1\|WP_067204329.1\|138376_138856_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014616.1\|WP_067204381.1\|154422_155475_+\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|239584
NZ_CP014616.1\|WP_067204351.1\|143493_144192_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP014616.1\|WP_082786447.1\|150012_151626_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|223153
NZ_CP014616.1\|WP_067204339.1\|140701_141436_+\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|182593
NZ_CP014616.1\|WP_067204345.1\|142359_143130_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014616.1\|WP_067204377.1\|152216_152957_+\|3-oxoacyl-ACP-reductase-FabG	unknown	unknown	gnl\|CDD\|187594
NZ_CP014616.1\|WP_067204342.1\|141571_142354_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014616.1\|WP_067204366.1\|147833_148331_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014616.1\|WP_067204363.1\|147389_147719_-\|MGMT-family-protein	unknown	unknown	gnl\|CDD\|226219
NZ_CP014616.1\|WP_067204374.1\|151645_151975_+\|bacillithiol-system-redox-active-protein-YtxJ	unknown	unknown	gnl\|CDD\|378538
NZ_CP014616.1\|WP_067204336.1\|140160_140529_-\|glyoxalase	unknown	unknown	gnl\|CDD\|319909
NZ_CP014616.1\|WP_067204354.1\|144350_145274_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP014616.1\|WP_067204371.1\|149435_150008_+\|glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|234691
NZ_CP014616.1\|WP_067204360.1\|146813_147200_-\|large-conductance-mechanosensitive-channel-protein-MscL	unknown	unknown	gnl\|CDD\|234795

Protein	Function_ID	Function_description	E-value
NZ_CP014616.1\|WP_067204381.1\|154422_155475_+\|fatty-acid-desaturase	gnl\|CDD\|239584	cd03507, Delta12-FADS-like, The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which catalyzes the hydroxylation of oleate to ricinoleate. Plastid-bound desaturases (Arabidopsis delta-12 desaturase (FAD6), omega-3 desaturase (FAD8), omega-6 desaturase (FAD6)), as well as, the cyanobacterial thylakoid-bound FADSs require oxygen, ferredoxin, and ferredoxin oxidoreductase for activity. As in higher plants, the cyanobacteria delta-12 (DesA) and omega-3 (DesB) FADSs desaturate oleate (18:1) to linoleate (18:2) and linoleate (18:2) to linolenate (18:3), respectively. Omega-3 (DesB/FAD8) and omega-6 (DesD/FAD6) desaturases catalyze reactions that introduce a double bond between carbons three and four, and carbons six and seven, respectively, from the methyl end of fatty acids. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within the homologue, stearoyl CoA desaturase. Mutation of any one of four of these histidines in the Synechocystis delta-12 acyl-lipid desaturase resulted in complete inactivity.	4.49501e-69
NZ_CP014616.1\|WP_082786781.1\|153157_154207_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	4.48134e-38
NZ_CP014616.1\|WP_067204351.1\|143493_144192_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	6.44195e-65
NZ_CP014616.1\|WP_067204348.1\|143132_143501_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	1.16959e-35
NZ_CP014616.1\|WP_067204357.1\|145251_146193_+\|ABC-transporter-permease	gnl\|CDD\|224196	COG1277, NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only].	2.39621e-14
NZ_CP014616.1\|WP_067204377.1\|152216_152957_+\|3-oxoacyl-ACP-reductase-FabG	gnl\|CDD\|187594	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs. This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	1.35092e-111
NZ_CP014616.1\|WP_067204369.1\|148621_149281_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	1.98551e-49
NZ_CP014616.1\|WP_082786447.1\|150012_151626_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|223153	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism].	5.55025e-59
NZ_CP014616.1\|WP_067204339.1\|140701_141436_+\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|182593	PRK10621, PRK10621, hypothetical protein; Provisional.	1.77189e-20
NZ_CP014616.1\|WP_067204363.1\|147389_147719_-\|MGMT-family-protein	gnl\|CDD\|226219	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	3.8307e-34
NZ_CP014616.1\|WP_067204374.1\|151645_151975_+\|bacillithiol-system-redox-active-protein-YtxJ	gnl\|CDD\|378538	pfam11009, DUF2847, Protein of unknown function (DUF2847). Some members in this bacterial family of proteins with unknown function are annotated as YtxJ, a putative general stress protein. This cannot be confirmed.	2.53454e-41
NZ_CP014616.1\|WP_067204336.1\|140160_140529_-\|glyoxalase	gnl\|CDD\|319909	cd07245, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	6.71742e-30
NZ_CP014616.1\|WP_067204354.1\|144350_145274_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	3.16627e-95
NZ_CP014616.1\|WP_067204371.1\|149435_150008_+\|glycerol-3-phosphate-acyltransferase	gnl\|CDD\|234691	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY.	1.91993e-49
NZ_CP014616.1\|WP_067204360.1\|146813_147200_-\|large-conductance-mechanosensitive-channel-protein-MscL	gnl\|CDD\|234795	PRK00567, mscL, large-conductance mechanosensitive channel protein MscL.	3.11316e-53

>NZ_CP014616.1|WP_067204357.1|145251_146193_+|ABC-transporter-permease
MLKLIQNEWMKLWSKKATWIMTGLLVVAILGMLGLTKWIDTMSNYDEPDWKTSVQGELTITKEQLGTTTLVDSERERLEDKEKVLEYRLANSIEPLNGNSRESMIMNSSGIGSIAVLLTVIVAAGIVASEFTQGTIKMLLSRPVKRWKILTSKYVTVILFGILLMLIGFIVSILGAYLFFQSGQGQELVWNGKEVVEVSVWGKGLYILLLSFGNVFVTATFAFMIGSVFRSSSLAIGLSLFIYFMGSTLVMLLAKYEVVKYIVFTHMDLTIYETDFRIVEGITMSFSLAVLAVYIVIFLIISYTTFIKRDITA
>NZ_CP014616.1|WP_067204354.1|144350_145274_+|ABC-transporter-ATP-binding-protein
MEMKPIVELKNLSKTIGKKKIIDNLSLSLYPGQITGFLGPNGAGKTTTIRMMVGLMEATGGDIIIDGKLLADDFEEGLSKVGVIVENPEMYKFMSGYKNLLHFARMHDGVTKARIEEVINQVGMQNRIHEKVSTYSLGMRQRLGLAQALLHRPKFLILDEPTNGLDPAGIREFRTYLKMIAEEEGVSVFVSSHMLSEIELMCDRIAVIQNGKLIDIRDMTEEQESHYYIEAFPAETAESMLKAEGFNVEAHKEGFIINAEKTQIPGLIQQIAAHEMQLFAVQPHRKTLEDQFLEMTGGGQIAEAHTK
>NZ_CP014616.1|WP_067204351.1|143493_144192_+|ABC-transporter-ATP-binding-protein
MIELKNITKKYGRRKALEDLTLSLPQGKIIGLVGENGSGKTTLLKLISGLVTPDSGRATFSGSRITRKVASNIAYMPDADLFYPYFTVGQLIEFYESQFVDFNTAKAKEIAQFLNLSLDSKIKNLSKGNRGRVKIAVTLGREADYYLLDEPFSGLDPMVRDDIAKGLIRFTDPERQTVLLSTHELKEVEPLLDEIVVLRGGRIIAHEAVDIIRDTYGKDATSWMVSLFRREV
>NZ_CP014616.1|WP_067204348.1|143132_143501_+|GntR-family-transcriptional-regulator
MGIDFLPDKPIYQQLIDLITGDIIRGTLNPGEKLPSVRDYAVEAGVNANTMQRVYKELEQMEITDTKRGQGSFVTEDELKIAMLRNEMKEQLVTSFIQSVEALGFTTTEMLQHLQERGGKDD
>NZ_CP014616.1|WP_067204345.1|142359_143130_+|hypothetical-protein
MKKWKGLLRKEWAQMKWRLVIFVLITSVIQYLGVNRIAYGLPEDFYASIQPMIALCFMLHLIMAVSLFFDSLGKEMGRLDIWLHSPASIRQLVYAKFSLIVLTVGCSLLLCGTIAAISNYARDGAVPLVDDLFLYLSVGVVILLNAIYVMAIVFFFWSIYQVFRSHIGLFSIIVIIALVNIWIIGWGYVWFTEILQLVMEMGPMHGPIKTVDILMFNNYIVPSGSILTIGSLILYGLLTALYFVAGAMLFEKKVRL
>NZ_CP014616.1|WP_067204342.1|141571_142354_+|hypothetical-protein
MKQWNGLLKKEWVTLKWPLLVSALLGIIVMSFVPHLIANIFGLEVHVFEVVLVICFIWAGASVLAPVIALFIMLEREIKRPDVWFHSTASIFKLVGAKAFFASLIGAVGLLIPTLVLAVQHVLFSSTMATFDDLFFFGSIFIVMIFAVSIIFMSIGFFFWVIDRLMKPYLKGFSIVATIIIFLVASRLYSLFVLSELYEKLILIGPIDLMKIKNPKINVDFIYLEHAETFFYTGEIIFDIFFTFIMFIIAAVLFEKKVRL
>NZ_CP014616.1|WP_067204339.1|140701_141436_+|sulfite-exporter-TauE/SafE-family-protein
MDYILIFFIGMAAMTLGTLAGGGGLITVPAMLLMGIPIHSVLGAGKISTTVSSFSTFITVLLKKQVTFKESFWIIPISLFGGFTGGFIATRLTESTMYIIAVILLIIAFLTSFLSKVDFSGEESLRPTKVAIPGLLGIGIYDGMFGPGQGTLLLYLFGHLRIAYIRAIGFGRLATFSSGFGAAISYIAMGKIIWPIAFVLMAGSLSGAQIGVRLAERLNPDHVKILLRIITIALIIQLIVNSFL
>NZ_CP014616.1|WP_067204336.1|140160_140529_-|glyoxalase
MSKFLTGIDHIQIAAPPESEDKARKFYGELLGMEEIPKPENLKGRGGCWFLCGSQEVHIGIQQDFMPAKKAHPGFTVNALEQLKLRLEEANYPFSEELPIEGRSRFFTHDPFGNRIEFLEFE
>NZ_CP014616.1|WP_067204333.1|139046_139997_+|hypothetical-protein
MRQEIQERQMELTMIRTERNRVKRRLEGAEVKLKDAIIQRDNLHEKLTKEQQDVVKLGKFSFMNKISEWTGKWDEKVEKEISEAADAELHYNEAEKVVTDLEAEAIRLREEIKNPDFDYIEEEWADFLKEKETWIRFNDTIANGTLQKIADDRVRLRSMLREIDEACDAGNKANRALDAALEKLGAAEGLSVWDTFLGGGLLVSALKYSEINSSDDLVHRAQRALRHFETELMDVQNAATESFTVNKNDIFTFTDLFFDNIFSDWMVHSRITDAKSKLNDVLQDVRKVQDRLARKRDELLHELERLDVQEREIIEA
>NZ_CP014616.1|WP_067204329.1|138376_138856_-|hypothetical-protein
MHKLLSIAIVLILPLSACGKEPAVSTLPDPVPDQEMFSSEEGLSLVLDEDSFVGSPPIIKTLVRNNSTSDYQLGEFYHIEVNKDGKWYIITYSDAVFLKNPSFKDYGNVLSAGSEARQTFSVDALGVTLIPGEYRLVKTFISTGEPMHELSVAVPFSVE
>NZ_CP014616.1|WP_067204360.1|146813_147200_-|large-conductance-mechanosensitive-channel-protein-MscL
MLKDFKEFALKGNVIDLAVAVVIGAAFGKIVSSLVENIITPLIGLLSGGVDFSGLSYTFLKAEIKYGVFIQSVFDFIIVAFAIFMAIRLMMKFKRKEDPVVEEALPEVEPKEALLIEIRDLLKEGKTL
>NZ_CP014616.1|WP_067204363.1|147389_147719_-|MGMT-family-protein
MNLFTERVIRIIQGIPAGHVMTYGQVAAAAGSPRGARQVVRVLHSMSKKYELPWHRIINVQGAISSPANAESKGYDQRGLLEMEGIKFNEDGKVDLTVYRWFPLDGEEG
>NZ_CP014616.1|WP_067204366.1|147833_148331_+|hypothetical-protein
MSELFAKRTGIGFALKGVGLAVIAWGIIQGFIFIMTFGGVFSNGIGLGSFLYPIFTYSICGILIIGFGEVIDLLQKIHDQNDPKAQALQSIEDNSVAIANASIPLSIAQEIKDYYSTKNIWADSISPTKTSNVFIIKINGRTEYIELGGLTPKILSEEETTRYFG
>NZ_CP014616.1|WP_067204369.1|148621_149281_-|phosphatase-PAP2-family-protein
MRELSFRLLVAFVLCIFFGIAFGYIAAAVGNESIVHFDTAVIGFVQGLEAPWLTSIMKVFTWIGSGYVVAPIALIGFIVLYFVLRYRHQAFLLIAVIAGTVLLNGALKIYFKRERPEIHRIMDANGFSFPSGHSMMAFALYAIIAYIAWRNVKTTTSRVVLVLFTAVMIVMIGTSRIYLGVHYPSDIVGGYAVSALWVTIAISVYAYFQNKLKKTVSRR
>NZ_CP014616.1|WP_067204371.1|149435_150008_+|glycerol-3-phosphate-acyltransferase
MTLILLVVGSYILGNVLTGSIISNFFFKKNIRIEGSGNPGARNAGRVLGKKAFVATFIGDALKGALAIFVAKWLGFGVAVELCALFAVTLGHVYPLFLKFRGGMGVSTFIGGMLAFNPLLFAVFVGLFFVFYPFLKSFTLAGLTAVLLMPILVLAFSYGIPVFIAACLLSLLLLFTHRADLKQKLMPEKG
>NZ_CP014616.1|WP_082786447.1|150012_151626_+|aminotransferase-class-V-fold-PLP-dependent-enzyme
MSFIYKIAETALEFEQIHELNYRTFAEEIPQHDQNESRKLVDKFHDENTYIICKKDNRVVGMIAIRSERPFSLDGKIGPVEHHLPFQSKNPVEIRLLAIEQDYRNGRAFLGLTQALVQYCLKAGYDAALISGTVREQKLYGQLGFLPFAQLTGTAEAAFQPMYLTKETFKAGVAGRISKPLVNFLPGPATISEDVRKAVMAEPFSHRSSEFESVLQRVKDKLTALTGAKYVQLLQGTGTLANDVVAAQLSMHSGKGLILVNGEFGFRLTDHAQRFGMGFDTMEIEWGTPFDADEIEAALCSGRYSWLWVVHCETSTGVLNDLNSFKKFCSQFGITLAVDCVSAIGTTAVDLTGVAYATGVSGKGLLSYTGLSFVFHNEEIPANDNLPRYLDLGTYAAARGIPYTQSSNLVSALDTALLRFEQLAEVFAAISNRARKVRNAVEQAGLTILASEKYAADAIVTIALPKDLSAMQLGDNLFLNGFNVHYESAYLRERNWLQISCMNNVAEKELNRMLELLSWLTSVDEQVFTTNSNGKTY
>NZ_CP014616.1|WP_067204374.1|151645_151975_+|bacillithiol-system-redox-active-protein-YtxJ
MKELRTVNEWYDVLEQSKENPLFVLKHSTTCPVSAAAYNAFETSAEEVPKYFLKVQESRPVSNEIESNLHVEHQSPQLFLLKDGQAVWQATHYSISGPQIKKAVENYGN
>NZ_CP014616.1|WP_067204377.1|152216_152957_+|3-oxoacyl-ACP-reductase-FabG
MRLQYKTVVITGGANGIGAVAAKLFGKNGAQIAIVDFDKKAGEAKAQQLHELGIEAAFFQADVSDSENVKEMATKVIEQFGKVDILINNAGITKDAMMLKLEVDDFKRVIDVNLTGVFNCTQAFLPTMLSQGKGKIINTSSIAGTGGNVGQTNYAAAKAGVIGMTRTWAKEFGRQGINVNAVAPGFIETDMIDTIPEKILGQIKMMTPYTRLGTPEDVANAYLFLASDESDFINGTVLEVDGGMLK
>NZ_CP014616.1|WP_082786781.1|153157_154207_+|GGDEF-domain-containing-protein
MEYGISYGLAFVLFAGPYGVFLYQIVYRSSVYLLRKIKNEKRSDSVIDTMYNIGAFTLSNVAGYYLFYAFIPYFTPFPFGFWLLILLLNGITMYISDLTLLSLLYLEKSIQTRQAAWAFLKDRSILDLWKTGFTNALLFVFLIEGRWESLIALFMLNYIVSRSFVLKSQNMQDKLERNQFEEMAYTDFLTGARNRAFMDKQMGQPKLYDAPFGVVVCDIDQFKKVNDTFNHAVGDTVIIHFAKLLQGHLEKDDCLFRTGGEEFTLFIRNRNYDGVKELVESLRLEVERSFVKAEFKGEPQYISYTASFGLFYKRFTDHTSIEKGHTYADDLLFDSKRTGRNRVTAEDGS
>NZ_CP014616.1|WP_067204381.1|154422_155475_+|fatty-acid-desaturase
MSKEKTKQLHKDVAPFAKSDKKKSIMQLINTVIPFIVLWFLAYQSLSVSIWLTLGLCVIAAGFVIRTFIIFHDCTHGSFFKNKKTNDIVGTITGVLTLFAYEKWKREHSIHHATSSNLDKRGTGDIWVMTVEEYVEASKWQRFAYRLYRNPIVMFGFGPLFLVLISSRFNRKDARKKERNNTYLTNAILVALYTGMILLIGWQAFVLIQGTTMFVAGALGIWLFYIQHTFEDSYFEEESEWDYVKAAIDGSSYYKLPRVLQWATGNIGFHHVHHLSPRVPNYNLEIAHESTPPLHQATTITIKESLSSIRYRLYDPEKKRFIAFKDVKHMLKSASSSIDLKPKRTSLDAE

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Crispr_ID: NZ_CP014616_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014616_2

686965-687092

Orphan

Consensus_repeat	Method
CGTAAACTAAACAACAAAGTTGAGAAAGTATGCAACGTATCAAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014616_2

>merge|NZ_CP014616|2|686965-687092|CRISPRCasFinder
CGTAAACTAAACAACAAAGTTGAGAAAGTATGCAACGTATCAAGAATTATGCAACGTATCTCCAGAAGTAAACAACACACCGCGTAAACTAAACAACAAAGTTGAGAAAGCATGCAACGTATCAAGAA

>NZ_CP014616|2|2|686965-687092|CRISPRCasFinder
CGTAAACTAAACAACAAAGTTGAGAAAGTATGCAACGTATCAAGAA	TTATGCAACGTATCTCCAGAAGTAAACAACACACCG
CGTAAACTAAACAACAAAGTTGAGAAAGCATGCAACGTATCAAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014616.1\|WP_067205618.1\|693546_695559_+\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_CP014616.1\|WP_067205586.1\|676912_678334_+\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181061
NZ_CP014616.1\|WP_067205584.1\|674717_676937_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	unknown	unknown	gnl\|CDD\|234921
NZ_CP014616.1\|WP_067205607.1\|686162_686855_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369778
NZ_CP014616.1\|WP_067205622.1\|695566_696694_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377863
NZ_CP014616.1\|WP_067205631.1\|698546_699977_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	unknown	unknown	gnl\|CDD\|235489
NZ_CP014616.1\|WP_067205613.1\|690112_690433_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226893
NZ_CP014616.1\|WP_067205592.1\|679404_679977_+\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|187714
NZ_CP014616.1\|WP_067205589.1\|678349_679408_+\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP014616.1\|WP_067205604.1\|685316_686027_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP014616.1\|WP_067205595.1\|680080_681616_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NZ_CP014616.1\|WP_067213822.1\|689032_690085_+\|DUF3048-domain-containing-protein	unknown	unknown	gnl\|CDD\|378618
NZ_CP014616.1\|WP_067205610.1\|687292_689011_+\|adenine-deaminase	unknown	unknown	gnl\|CDD\|223933
NZ_CP014616.1\|WP_067205615.1\|690540_691233_+\|heptaprenylglyceryl-phosphate-synthase	unknown	unknown	gnl\|CDD\|235237
NZ_CP014616.1\|WP_067205626.1\|697080_698544_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572
NZ_CP014616.1\|WP_067205624.1\|696767_697055_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NZ_CP014616.1\|WP_067205581.1\|674047_674734_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurQ	unknown	unknown	gnl\|CDD\|235140
NZ_CP014616.1\|WP_067205617.1\|691285_693523_+\|DNA-helicase-PcrA	unknown	unknown	gnl\|CDD\|273429
NZ_CP014616.1\|WP_067205601.1\|683314_684352_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|335768
NZ_CP014616.1\|WP_067205598.1\|681629_682889_+\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|234856

Protein	Function_ID	Function_description	E-value
NZ_CP014616.1\|WP_067205618.1\|693546_695559_+\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_CP014616.1\|WP_067205586.1\|676912_678334_+\|amidophosphoribosyltransferase	gnl\|CDD\|181061	PRK07631, PRK07631, amidophosphoribosyltransferase; Provisional.	0
NZ_CP014616.1\|WP_067205584.1\|674717_676937_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	gnl\|CDD\|234921	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL.	0
NZ_CP014616.1\|WP_067205607.1\|686162_686855_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369778	pfam08242, Methyltransf_12, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	2.22452e-15
NZ_CP014616.1\|WP_067205622.1\|695566_696694_+\|hypothetical-protein	gnl\|CDD\|377863	pfam07537, CamS, CamS sex pheromone cAM373 precursor. This family includes CamS, from which Staphylococcus aureus sex pheromone staph-cAM373 is processed.	2.16823e-130
NZ_CP014616.1\|WP_067205631.1\|698546_699977_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
NZ_CP014616.1\|WP_067205613.1\|690112_690433_+\|hypothetical-protein	gnl\|CDD\|226893	COG4496, COG4496, Uncharacterized protein conserved in bacteria [Function unknown].	2.11663e-42
NZ_CP014616.1\|WP_067205592.1\|679404_679977_+\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|187714	cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART). Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities.	6.16617e-85
NZ_CP014616.1\|WP_067205589.1\|678349_679408_+\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP014616.1\|WP_067205604.1\|685316_686027_+\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	5.96969e-07
NZ_CP014616.1\|WP_067205595.1\|680080_681616_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NZ_CP014616.1\|WP_067213822.1\|689032_690085_+\|DUF3048-domain-containing-protein	gnl\|CDD\|378618	pfam11258, DUF3048, Protein of unknown function (DUF3048) N-terminal domain. Some members in this bacterial family of proteins are annotated as YerB. However currently no function is known. This entry represents the N-terminal domain.	6.37862e-57
NZ_CP014616.1\|WP_067205610.1\|687292_689011_+\|adenine-deaminase	gnl\|CDD\|223933	COG1001, AdeC, Adenine deaminase [Nucleotide transport and metabolism].	1.8363e-149
NZ_CP014616.1\|WP_067205615.1\|690540_691233_+\|heptaprenylglyceryl-phosphate-synthase	gnl\|CDD\|235237	PRK04169, PRK04169, heptaprenylglyceryl phosphate synthase.	7.17333e-97
NZ_CP014616.1\|WP_067205626.1\|697080_698544_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
NZ_CP014616.1\|WP_067205624.1\|696767_697055_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	2.21934e-28
NZ_CP014616.1\|WP_067205581.1\|674047_674734_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurQ	gnl\|CDD\|235140	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ.	7.56356e-127
NZ_CP014616.1\|WP_067205617.1\|691285_693523_+\|DNA-helicase-PcrA	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP014616.1\|WP_067205601.1\|683314_684352_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|335768	pfam04397, LytTR, LytTr DNA-binding domain. This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.	2.39627e-26
NZ_CP014616.1\|WP_067205598.1\|681629_682889_+\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|234856	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional.	0

>NZ_CP014616.1|WP_067205607.1|686162_686855_-|class-I-SAM-dependent-methyltransferase
MTDKMQFDKEMAAEYDRGVRRTLPTYDSMFKLVQAYLRANITQQESVLIIGAGGGNELATLGPTNPAWTFTAVDPAPPMLDFARMKAIDLKIDDRVEFIEGTVDDVTEEKLFGAATCMLVLHFIEDIDEKRILLKKIRHHLSPGAPFVMASMYGNPSDPSFNELFALWKAYWLDSTNLTETEVNEMEKTVRKLSFIPEEEIVLLLREAGFGNIAKFFTTNMFGGWICKAE
>NZ_CP014616.1|WP_067205604.1|685316_686027_+|ABC-transporter-permease
MTFSMKRVNAIFQKDFKDISRNSSVSVTVPIPLVLAFFLGEMSDDISIVAHYMIINFSMVIVGAFVQCCLIAEEKEKNTLRGLMLSPASTLEILSGKSLLSLIATMMIIIIGAMLSGYKSDNVVIIASAILLTSLFFIGLGTLLGLLAKSVMEASVIILPFMLVFGFGSMATMFADKYPILKAMGYTPNAQLTDIAVKVESGIGFGGVWLNFGIIALWILGIFVLTIIVFKKKRID
>NZ_CP014616.1|WP_067205601.1|683314_684352_+|ATP-binding-cassette-domain-containing-protein
MGLQFTGVEKRLNDSLIFPEFNLHSGSNQVTAIYSSLNVRNTLLQMLTKEIPILNGEIYINDVEISKVTLSDIGFSFLNEGLYERLTVAEQINFYRKLYSADISTATILRKVHLEEKRNVRIKKLSYSEQRRIQFAKLLIQNPEQFIFEEPDQNIDIETQRVLIIMLEELRDKGKSVLILTGNMESAVNLADKVFKLDENGLHEIQIARELEEDIPSILEASAEIDKTEIQPVRFEKIPTKVNEKIVLFDPPEIDYIESNDGQSSLHINGEAFPTMFTMNELEERLQHFGFFRCHRSYIVNLQKVREVITWTRNSYSLILDDEKKSNIPLSKTKMAELKVMLVLK
>NZ_CP014616.1|WP_067205598.1|681629_682889_+|phosphoribosylamine--glycine-ligase
MNILVIGSGGREHAIARQFNVSPSVNKIFVAPGNDGMKNDAECVQIDALDFEALASFAQKNQVDLTFVGPEQPLGEGIVDYFTERGLTAFGPTKAAALIEGSKSFAKELMTKYAIPTAAYGTFTDAEEAKAFIRENGAPIVVKADGLAAGKGVIVAMTLEDALEAVDDMIGNQKFGESSSRVVIEEFLDGEEFSYMSFVHDGQIYPMVVAQDHKRAYDGDRGPNTGGMGAYSPVPQISDAVVKEAYDKVVVPTVEAMAAEGTPFTGILYAGLILTDKGPKVIEFNARFGDPETQVVLPRMASDFGEFMAALMAGKPYDLKWDDKAMLGVVIAADRYPGDVVKGAVLPDLDVLSARDLEVFHAGTKSNGEGFVGNGGRVLLITAKADSLKEAQVEVYKGLSQLEWNGFFYRQDIGWRTFE
>NZ_CP014616.1|WP_067205595.1|680080_681616_+|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MKKRALLSVSDKNGILEFAKELESLGYELLSTGGTMKHLADNGVAVTAVDAVTGFPEIMEGRVKTLNPMIHGGLLAKQDNPSHILQMEEHGIQPIDVVCVNLYPFKETISKPDVTNDDAIENVDIGGPAMLRASAKNHAYVTVIVDATDYDQVLTEIKADGKTTLETRRRLAAKVFRHTAAYDALIAGFLTDLTGEEFPEQVTYTYELKQPLRYGENPHQKAAFYSRPLGSDFSIAYAKQLHGKELSYNNIQDANAAIQIIKEFDKAAAVAVKHMNPCGVGTGKTIFEAFNKAYEADSTSIFGGIIALNREVDAATAEKLSGIFLEIIIAPAFTEEAVEILTKKKNIRLMTISFDQNKKDKWNTVSVEGGLLMQEPDAYGFADADIRVATDRQPTEAEWEAMKLGWAVVKHVKSNAIVVTDDNMTLGVGAGQMNRVGAANIALTQAGERAKGAALASDAFFPMDDTVEAAAKAGITAIIQPGGSVKDEDSIKKANEYGITMVFTGVRHFKH
>NZ_CP014616.1|WP_067205592.1|679404_679977_+|phosphoribosylglycinamide-formyltransferase
MNRKVKIAVFASGSGSNFAAIEQACSADELNAEIVLMVTNKPEAFVVERADKVSIPVAAIRPKDFETKDAYEEAILHALRESGAEWLVLAGYMRLVGPVLLMAYPSRIVNIHPSLLPSFPGKDAIGQAVAHGVKVTGVTVHLVDEGMDTGQILAQCAVDVVSGDEDKTAEAIHAVEHGLYKDTLNELFSR
>NZ_CP014616.1|WP_067205589.1|678349_679408_+|phosphoribosylformylglycinamidine-cyclo-ligase
MSKAYENAGVNIEAGYESVERMKSHVARTARKGVTGTFGGFGGMFDLSALNYKEPVLISGTDGVGTKLKLAFMADKHDTIGIDCVAMCVNDIVAQGAEPLYFLDYIALGKAVPEKVEAIVKGIADGCVQSGAALIGGETAEMPGLYEVDEYDLAGFAVGACEKSKVVTGEKVVAGDVLVGIASSGIHSNGYSLVRKIVIEDQGCEIDGLIAGYEDLGTVGNALLTPTKIYAKPVLQMHNELDVHSMGHITGGGFYENLPRMLVDGFGAEIDLGSWPVLPVFKMLKEKGELLDKDLYSVFNMGIGFVVALPEEQANAALKIAAEHGEEAFIIGRVIEGDGVTFTGTHDGSLAE
>NZ_CP014616.1|WP_067205586.1|676912_678334_+|amidophosphoribosyltransferase
MLAELRGLNEECGVFGIWGHEDAAQISYYGLHALQHRGQEGAGIVTKEGKKFHVIKGEGLVNEVFSGNEINDLKGNSAIGQVRYSTENGRGIENVQPLVFRSTTGSLSVAHNGNIVNAVELREHLERQGSIFQTNSDTEVLAHLIKKSSGSLTQRDRVKKALSMLKGAFAFVILTDDGLMVAQDPNGLRPLSLGKLGDAWVVASETCAFDLIGAEWVRSVEPGELIIINDKGLQSDRFAKAADSAMCSMEYVYFARPDSDIDGINIHSARKRCGKRLAREVHIEADVVTGVPDSSISAAIGFSEESGIPYELGLIKSRYVGRTFIQPTQEMRERGVKMKLSPVRQVVNGKRVVMVDDSIVRGTTSKRIVNLLKEAGATEVHVVIASPPLVSPCFYGVDISTDSELIATNRTVDEIRELIGADSLTFLSAEGMVEAIGRPDKTKNCGQCLACFTGEYPTEIYSDTVLPHKKEIV
>NZ_CP014616.1|WP_067205584.1|674717_676937_+|phosphoribosylformylglycinamidine-synthase-subunit-PurL
MSAKHEPNAQQIKDEQLYRQMGMTDEEFERATEMLGRLPNYTETGLFSALWSEHCSYKSSKPVLRKFPTDGPRVLQGPGEGAGIVDIGDNQAAVFKMESHNSPSAIEPFIGAATGAGGVLRDVFSMGARPVALVNSLRFGDLTDERDRYLFEEAVAGIASYGNAIGIPTIAGEVQFDNCYSKRPLVNAMAVGLLNHEDIQKGIASGIGNSVMYAGATTGRDGIHGATMSSSEVKDGELPVMQAGDPFLEKLVMEACLELVKSDALIGIQDMGAAGLTSSAAEMASKAGYGVELNLDLVPQREEGMTAYEMMLSESQERMLIVVKKGREQEVTDLFAKYNVEAVTIGKVTDDKMLRLLHKGEVVAEVSADALAEDAPVYHKKSEEPAYFREFQAMEMTEPVVTDLNETLKDLLQRPTIASKEWVYNQFDTQARSNTVVAPGSSAGVIRVTGTNKGLAMTSDCNSRFVYLDPETGGKIAVAEAARNLICSGAEPIAITDCLNFGSADKPEVFWQLEKSADGISDACRKLNAPVISGNVSLSNEVNGVPIYPTPTIGMVGLVHDLSQVTTTEFKNAGDVIYVIGEASLDFGGSELQQMTEGKIFGQAPAIDLEVEAARQKELLTAIQAGLVQSATDLSEGGFAVALCEKAFGTEGLGAGVTVSGSAVTALFSETQSRFLVTVKEEKASDFEKAVADAIKIGVVTDSNRIVINGEDGTLIDGTVDELRSAWKGAIQCLLNSEA
>NZ_CP014616.1|WP_067205581.1|674047_674734_+|phosphoribosylformylglycinamidine-synthase-subunit-PurQ
MKFAILVFPGSGCDIDMYHAVNTVLGNKAEYIWHTEANLDGYDAVLIPSGASYGDYLRAGALAQSSPAIESLKAFAATGKPVLGVGNGFQILAEAGLLPGAFLRNKGLKFRSGKTNLTVLNTDSIFTADYDNGQEITIPFAHEFGNYYVDEKTVAELKSTNRIVFTYADGNADGSTADIAGVLNEKGNVLGMMPLPERAVEEIIGGTDGLPLFNSILKRWSENNVSQA
>NZ_CP014616.1|WP_067205610.1|687292_689011_+|adenine-deaminase
MWEPKEIKDQLHMIDGKKAPDLIITNAEYLHSIYKKWVTGNIWIAGDRIVYAGKEMPVMTEGAEIFDATGKKIVPGYIEPHVHPFQLYNPRTFADYASRLGTTTFISDNLILFMSLDNETSFGLLDELNKLPFSFYWWARFDSQTILQKEAELFNLASIKEWIERPEVLVGGELTGWPRLMTGEPNMVASVNAAKIGGKKIEGHFPGASERTLARMRLLGTDGDHEAMTIEEVEARLLHGYGVTLRYSSIRPDLPHLLKDIVAKELNVFDHLMMTTDGSTPSFHLDGVMDKCIRAALEAGVPPIDAYQMASYNVARYYDMTDLHGFIATGRFATLNILEDEYNPVPTDVLSKGKWLKRENESTEPFPTIDWSFVEAFAPNFELDESDFIFDNPVGIEMLNDVITKPYNVTIDTKVDKLADDHDESFLMLLDRNGKWHVNTIIKGFATGIQGFASSYSNTGDIILIGKDKKEMHNAFKEIKRIGGGMVLSENGGIVATLPLAIGGGLSAEPVQKLIEQEIELKKALADRGYTKGDAVYTLLFLQSTHLPYIRITQMGLYDVMKKEMIVPVTGR
>NZ_CP014616.1|WP_067213822.1|689032_690085_+|DUF3048-domain-containing-protein
MRGWLLYIAILMLLLAACSKEEKAEDVVPEPIEEEEEVIVEEEPVQGPTLYKEPFTGVLSEEESTRRAVLMTINNHPLARPQSGISDADIVYELAAEGNITRLLALFQSELPEEIGPIRSARDYFVQISKGLDAFYVAHGYSPDAKQMLQNRFVDNINGMQYDGTLFNRSKERRAPHNSYITKDNVLAGMEKTNSSIELSVIPAFSFLDSIEGAKIGDIASMLVVRYGTDPDFTSTYSYDAEKGTYNRMVKGILTVDKSNEKPVELSNILIFETAHRTIDNVGRQSVDIESGGRGMMFHAGIEKEIEWENIDGILTPMENGVPAKLVPGKTWIHIVSTQPGMETSVTYTP
>NZ_CP014616.1|WP_067205613.1|690112_690433_+|hypothetical-protein
MQIDKIRGHQTDQLFKAMLELKDLDECYEFFDDLVTISELQSLAQRLEVAQMLMMKKTYDKIQGETGASTATISRVRRCVDYGSGGYGKVLGRLYPQVNEEEAETK
>NZ_CP014616.1|WP_067205615.1|690540_691233_+|heptaprenylglyceryl-phosphate-synthase
MDFTTWRHAFKLDPEKTVTDEQLELLAESGTDGIIVGGTDGVTLDNVLDLLVRIRRYSVSVALEISTVDSVTPGFDYYFIPTVLNSTKVEWINGLHHSALREYGHMMDWDEIQPEGYCIMNPDCKAAKLTGVTEVPNEEDVVAYARMAEHLFKLPIFYLEYSGMYGDPKIVEAASRVLEKTRLFYGGGIRNGEDAKKMAEIADTIIVGNVIYEDFKAALGTVDAVKSVSR
>NZ_CP014616.1|WP_067205617.1|691285_693523_+|DNA-helicase-PcrA
MNKIAEDLLIGMNPEQARAVKKTEGALLIMAGAGSGKTRVLTHRIAYLVVEKNIYPSNILAITFTNKAAREMRDRIDGLLGAGTGERMWVSTFHSMCVRILRRNVDRIGISTSFSILDSADQLSVIKSVLKTLNLDAKQYEPRSMLNAISSAKNECIDAEMYRAQINPHNPYEKTIADVYDGYAKRLRKNQSFDFDDLIMMTLVLFERVPDVLEFYQNKFQYIHVDEYQDTNNAQYRLVNMLAAKFKNLCVVGDSDQSIYRWRGADIGNILSFEKDYKNAEMIMLEQNYRSTQRILQAANDVITNNKSRYDKKLRTDNEEGDSIYVYKASDEKDESQFVVGKVIELQEQEKLKLDQFAVLYRTNAQSRVIEEYLVKSNLDYTIVGGTKFYERKEIKDLLAYLKLVSNNDDDLALARIINEPKRSIGATSFDKMARFAIEHDRSIFDALQEVDFMGITSRAANEVAKFRELIAGFTRMQEYLSVTELVEQILDKSGYREMLHREKTIESESRLENIEEFLSVTEAFEKRAEEDTGDKSLVAFLTDLALIADIDSLDKEENKSTEKIVLMTMHAAKGLEFPVVFIIGMEENVFPHSRSMGDDEEMEEERRLAYVGITRAEQKLYLTSASYRTLYGRASYNSPSRFIAEISDDITEIVSRDSGFSIGGGSKARNEAPVRSAVKKPVYNTSGGDKMGWSPGDKAVHKKWGTGMIVSVKGTGEEVELDIAFPNPVGVKRLLAKFAPIEKA
>NZ_CP014616.1|WP_067205618.1|693546_695559_+|NAD-dependent-DNA-ligase-LigA
MDRLELEKRVEELNNLLHQYGHAYYSLDKPLTSDAIYDQYMQELLSIEAENPDLIYPDSPSQRVGGEILKGFGKVVHEFPMLSLSNAFNEEDLREFDRRVKAAAGHDVSYICELKIDGLAISLRYVDGKFVQGSTRGDGTVGEDITASLKTIRTIPLRLKESVAIEVRGEAYMPKQSFVKLNAMRDEAGDEPFANPRNAAAGSLRQLDPKIAASRNLAIFVYGIGGDGSLFGQDSHSDSLDYLAALGFETNKERKRCATIEEVIDYVGEWGESRSALDYEIDGIVVKVDNFEDQEQLGFTAKSPKWATAYKFPAEEVVTTLLDIELSVGRTGVVTPTAILQPVLVAGSTVGRASLHNEDLIKEKDVRIGDTVIIRKAGDIIPEVVAAIVEKRTGDEVPFEMPTNCPVCDSELVRIEEEVAIRCVNPQCPAQMKEAIIHFVSRNAMNIEGIGERVVDLLYKADLVHDVSDLYTLTREQLIELERMGEKSVSNLLTAIEASKENSLEKMLFGLGIRHVGEKAAAILAEEFGTLADLMVADAERLVTIHEIGDKVADSITTYFSNEKVLEVLRKLEAYGLNTAYKGRRRQDVPTDGLFSGKTVVLTGKLSILTRGEAKEKIEAFGGKVSGSVSKKTDLVIAGEDAGSKLAKAEELEITVWNEAELIEALGEKE
>NZ_CP014616.1|WP_067205622.1|695566_696694_+|hypothetical-protein
MRKIGILPGLAAILLLGGCLPSFGTEKEEAVQENDESIEETVMIPDVQLKEEFYKTPISFKKSASRGLIVNNIYTKYDMQEAEEGLLRLSNQHFNPKNHYFQEGQHIDKETAQAWLSRSSANKAGLNPPIEEGMSEETASEVAPNYLAHIVEQNYLVMTDDKKLHLAGISVGLALNSTSYSRSGKETKITDKVLEKQGMKMAEEVVKRLRTQEGLSDIPIVVGLFKQESRNSIVPGTYFATAIAGKGQSAPTGWKVVNEKYVVFPASSANGEYREMNTTFDSFKQDIDAYFPSFVNVIGTGFYKDNNLKSLEIKVPIQFFGTSETIGFTQYMTSLVNQHFPNVHTEVSITSVNGPEALIVKEADNDKPFVHIYGY
>NZ_CP014616.1|WP_067205624.1|696767_697055_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MTQLTIDEVKRHAGLARIAMTDAEAEMFAEQLEDMIGFSIKLEEVDTEQIAPMTHPLPLFNVLRKDIPTDALDREEMLKSVKEHEDGQIKVPTII
>NZ_CP014616.1|WP_067205626.1|697080_698544_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MTLFEKTATELQSLLHNREVSVKELTEESLARIEKMDGKVQAFLSTNGEQALAKAEELDNQPLEGRGPLFGLPIGLKDNIVTKGIVTTAASKMLEGFVPVYDATVVDKINEAGMVTIGKLNMDEFAMGSTTERSAFQTTHNPWNLDYVPGGSSGGSAAAVAAGEVAFALGSDTGGSVRQPAAFCGVVGMKPTYGRVSRSGLVAFASSLDQIGPITRNVEDNALLLSAIAGLDAKDSSTSPQAVPDFRAALTGDIKGLKIGVPAEYLGEGVSEEAKNAVLEALKVLESLGAEWEEVSLPHSKYASEVYYVISSSEASSNLARFDGIRYGYRAEGVKDLEELYARTRSEAFGNEVKKRILFGMYSLGAAQHGGLYVKSQKVRTLIAQDFATLFEKYDVIIGPSSATTAYKIGEKLEDPLTLYANDILTVPINLAGVPAISVPCGFSNGLPLGLQIIGKHYDEATLYKVAHAYEQATDFHTQTPVIWEGK
>NZ_CP014616.1|WP_067205631.1|698546_699977_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB
MNFETVVGLEVHVELKTNSKIMSPAHAHFGAEPNMNIHVIDLAYPGVLPVMNEQAVDFGMKAAMALNCEIAPITNFDRKHYFYPDNPKAYQISQDDRPIGANGWVEIEVDGKKKKIRIERVHLEEDAGKLTHTDEGHSLVDLNRQGVPLIEIVTEADVRSPEEAYAFLEKLKAIIQYTGVSDVRMEEGSLRCDANISIRPFGQEEFGTKTELKNLNSFNFVRRGIAYEVDRQEEVLLSGGKIEQQTRRYDEATGKTILMRVKGPANDYRFIPEPDLTDIHIDEAWMARVRAEIPELPDARKDRYINDLDLPAYDAMVLTLTKDMSDFFEATVSAGADAKLASNWLMGEVSAYLNAEAKELDATALTPEGLASMIKLITDGTISSKIAKKVFKELIDNGGNAADIVKEKGLVQISDEGTLRTIVTETLDANEQSIEDYKNGKERAVGFLVGQIMKATKGQANPPLVNKILLEEIAKR

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Crispr_ID: NZ_CP014616_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014616_3

2829889-2829992

Orphan

Consensus_repeat	Method
GAACGAGCATATAACCTTGCAACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014616_3

>merge|NZ_CP014616|3|2829889-2829992|CRISPRCasFinder
GAACGAGCATATAACCTTGCAACCAATCATAAACGACACACAAACGAGCATAACCTTGCAACCGATCATAATCGGCGTACGAACGAGCATATAACCTTGCCAAC

>NZ_CP014616|3|3|2829889-2829992|CRISPRCasFinder
GAACGAGCATATAACCTTGCAACC	AATCATAAACGACACACAAACGAGCATAACCTTGCAACCGATCATAATCGGCGTAC
GAACGAGCATATAACCTTGCCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014616.1\|WP_067210420.1\|2819454_2820240_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|277331
NZ_CP014616.1\|WP_067210448.1\|2828942_2829662_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP014616.1\|WP_067213974.1\|2837853_2838216_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP014616.1\|WP_067210443.1\|2826556_2827120_-\|RNA-polymerase-sigma-factor-SigX	unknown	unknown	gnl\|CDD\|236602
NZ_CP014616.1\|WP_082786605.1\|2835932_2836553_-\|SMC-Scp-complex-subunit-ScpB	unknown	unknown	gnl\|CDD\|234657
NZ_CP014616.1\|WP_067210457.1\|2833090_2833621_-\|thiol-disulfide-oxidoreductase-ResA	unknown	unknown	gnl\|CDD\|179545
NZ_CP014616.1\|WP_067210423.1\|2820462_2821125_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|212030
NZ_CP014616.1\|WP_067210470.1\|2837340_2837853_+\|DUF309-domain-containing-protein	unknown	unknown	gnl\|CDD\|377120
NZ_CP014616.1\|WP_067210425.1\|2821318_2822755_-\|ATP-dependent-DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|223588
NZ_CP014616.1\|WP_067210446.1\|2827165_2828950_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|380161
NZ_CP014616.1\|WP_067210454.1\|2831423_2833073_-\|cytochrome-c-biogenesis-protein-ResB	unknown	unknown	gnl\|CDD\|224252
NZ_CP014616.1\|WP_067210462.1\|2834934_2835936_-\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NZ_CP014616.1\|WP_067210473.1\|2838723_2840052_-\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|273415
NZ_CP014616.1\|WP_067210440.1\|2825358_2826591_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014616.1\|WP_067210459.1\|2833880_2834612_-\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP014616.1\|WP_067210467.1\|2836545_2837295_-\|segregation/condensation-protein-A	unknown	unknown	gnl\|CDD\|234635
NZ_CP014616.1\|WP_067210434.1\|2824359_2824941_-\|ECF-transporter-S-component	unknown	unknown	gnl\|CDD\|226129
NZ_CP014616.1\|WP_067210428.1\|2822754_2823795_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227291
NZ_CP014616.1\|WP_067210431.1\|2823904_2824156_+\|ferredoxin	unknown	unknown	gnl\|CDD\|224064
NZ_CP014616.1\|WP_067210451.1\|2830239_2831424_-\|c-type-cytochrome-biogenesis-protein-CcsB	unknown	unknown	gnl\|CDD\|274447

Protein	Function_ID	Function_description	E-value
NZ_CP014616.1\|WP_067210420.1\|2819454_2820240_-\|hypothetical-protein	gnl\|CDD\|277331	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	9.22056e-34
NZ_CP014616.1\|WP_067210448.1\|2828942_2829662_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.14679e-88
NZ_CP014616.1\|WP_067210443.1\|2826556_2827120_-\|RNA-polymerase-sigma-factor-SigX	gnl\|CDD\|236602	PRK09639, PRK09639, RNA polymerase sigma factor SigX; Provisional.	1.92501e-58
NZ_CP014616.1\|WP_082786605.1\|2835932_2836553_-\|SMC-Scp-complex-subunit-ScpB	gnl\|CDD\|234657	PRK00135, scpB, segregation and condensation protein B; Reviewed.	1.83417e-63
NZ_CP014616.1\|WP_067210457.1\|2833090_2833621_-\|thiol-disulfide-oxidoreductase-ResA	gnl\|CDD\|179545	PRK03147, PRK03147, thiol-disulfide oxidoreductase ResA.	3.41007e-84
NZ_CP014616.1\|WP_067210423.1\|2820462_2821125_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|212030	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.	1.45379e-08
NZ_CP014616.1\|WP_067210470.1\|2837340_2837853_+\|DUF309-domain-containing-protein	gnl\|CDD\|377120	pfam03745, DUF309, Domain of unknown function (DUF309). This domain is found in eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.	2.55652e-19
NZ_CP014616.1\|WP_067210425.1\|2821318_2822755_-\|ATP-dependent-DNA-helicase-RecQ	gnl\|CDD\|223588	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair].	4.6032e-144
NZ_CP014616.1\|WP_067210446.1\|2827165_2828950_-\|HAMP-domain-containing-protein	gnl\|CDD\|380161	NF033092, HK_WalK, cell wall metabolism sensor histidine kinase WalK. This model describes WalK as found in Staphylococcus aureus (sp\|Q2G2U4.1\|WALK_STAA8). A shorter version, as found in Streptococcus pneumoniae, called WalK(Spn) or VicK, is not included. WalK is part of a two-component system and works with partner protein WalR.	4.48173e-111
NZ_CP014616.1\|WP_067210454.1\|2831423_2833073_-\|cytochrome-c-biogenesis-protein-ResB	gnl\|CDD\|224252	COG1333, ResB, ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones].	2.09671e-104
NZ_CP014616.1\|WP_067210462.1\|2834934_2835936_-\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	2.26497e-64
NZ_CP014616.1\|WP_067210473.1\|2838723_2840052_-\|diaminopimelate-decarboxylase	gnl\|CDD\|273415	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis. [Amino acid biosynthesis, Aspartate family].	8.44425e-169
NZ_CP014616.1\|WP_067213974.1\|2837853_2838216_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	0.000239244
NZ_CP014616.1\|WP_067210459.1\|2833880_2834612_-\|rRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	1.40832e-96
NZ_CP014616.1\|WP_067210467.1\|2836545_2837295_-\|segregation/condensation-protein-A	gnl\|CDD\|234635	PRK00104, scpA, segregation and condensation protein A; Reviewed.	4.73923e-88
NZ_CP014616.1\|WP_067210434.1\|2824359_2824941_-\|ECF-transporter-S-component	gnl\|CDD\|226129	COG3601, COG3601, Predicted membrane protein [Function unknown].	4.00975e-43
NZ_CP014616.1\|WP_067210428.1\|2822754_2823795_-\|hypothetical-protein	gnl\|CDD\|227291	COG4955, COG4955, Uncharacterized protein conserved in bacteria [Function unknown].	1.55863e-61
NZ_CP014616.1\|WP_067210431.1\|2823904_2824156_+\|ferredoxin	gnl\|CDD\|224064	COG1141, Fer, Ferredoxin [Energy production and conversion].	3.72342e-22
NZ_CP014616.1\|WP_067210451.1\|2830239_2831424_-\|c-type-cytochrome-biogenesis-protein-CcsB	gnl\|CDD\|274447	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction. [Energy metabolism, Electron transport, Protein fate, Protein modification and repair].	6.36944e-47

>NZ_CP014616.1|WP_067210448.1|2828942_2829662_-|response-regulator-transcription-factor
MEEKVTLLVVDDEERIRRLLNMYLTREGYEVEEAVDGADALEKALVNNYDCILLDLMMPEKDGLEVLEELREKKIMTPVMMLTAKGEESDRVTGFESGADDYIVKPFSPREVVLRVKAILRRSVTFPGAASSSTSKDLVVFPQLTIDHDAHRVTAEGEEVGLTPKEYELLYFLAKSPDKVFDREQLLKEVWHYEFFGDLRTVDTHVKRLREKLSRVSEQAAKMIVTVWGVGYKFEIPNE
>NZ_CP014616.1|WP_067210446.1|2827165_2828950_-|HAMP-domain-containing-protein
MNRIWNSIVGKLWATILLLVSFVLFIVTALLLEFLDDFHTQQAEESLRREATTIGKIVNDHESQTSMNLIIDDILDDETNAMIVDTNGEVTHSFHKGLNKDRIENKVLYESMFYAAEKNNKQVVKEMILPSINEENVMEQYLVLSYPLEKGEQLGSSVIIYQSLEAVHRTTESTTRIVFLSAFIAFILTTFFAFFLSTRITSPLRGLRQAAFELSKGNFDTRLPVMQNDEIGQLATAFNQMGRQLKYHVELINQDKEQLSSILTSMTDAVITFNRDYTILLSNPQAEQLLQNWYFKNGAQEGNHHIPPAIFHMLEHVITFAEEVEDELELGGQFYGISISPLYSGNSIRGAVAVLRDMTDQHKLEKLRSDFIANVSHELRTPISMLQGYSEAIIDGVITSDEERDEMVQIIHDESKRMGRLVTDLLDLARMESGHMRLYKDDLSMIPFLDRIVNKFMQVAREANVDLTFEFLEDTVLISNVDEDRMEQVLTNLIDNAIRHTPDGGSVKLGIQKQVDMIEITVTDTGVGIPQEDLPYIFERFYKADKARTRGKGGTGLGLAIAKSIIDSHGGKIAATKGDTEGTIFSCILPLKKM
>NZ_CP014616.1|WP_067210443.1|2826556_2827120_-|RNA-polymerase-sigma-factor-SigX
MDDSVFHRLYEQYHQDVFKFLIYLTRDRDHAEDLMHEVYVRVLRAYAGFEGKSSEKTWLFSIAKNVAIDHFRKNTVRKKHLFDKFDWEKSELVSTGILPEEIVALSEEMQELLQALNTCTGDQKMVIIMRYFQDLSIAETAEILSWTEGKVKTTQHRAIKALQKKLNALPTEGGKLDDPQRLERQQD
>NZ_CP014616.1|WP_067210440.1|2825358_2826591_-|hypothetical-protein
MTHKDWNDNKIEKLLGDVPDISDNRQMSEILARLKQDERLNTPHRKKSKKWMPALVAVAALLVIGLLVPSMFGENELSMKDQSTDHKMMQSEDAEPSARGASLENESITDEEAEMGTMDGFSTRMASETGRTHHFAVYSEDVTDSTLFHLGLAGDQALSIAVTFIIPNSQINEDIGFLEPSSYDLYKKYADRLDESALGFQEYHPYKGNIAAEDHVIIHQLPQRHGYDIGSGSMEVYLDSLQDTFYGYQEVRFENEDGTATMFSEVGQPSTPLILKSGRNHLNYYMFEQQDGQQFLTSNFSQPQPSLNEALQQMKVKPNDVFKPVIPSTLNFEVKADDKLTTIKFTQPLDLDAMEPEKAMQMVEGMLLTAADFGEQLQFENVVQEEWNGFNFSQPLPVPVGSNPLPLILK
>NZ_CP014616.1|WP_067210434.1|2824359_2824941_-|ECF-transporter-S-component
MNNKKLRKMILIAMLGSIATVLMQFNFPLPALPGFLKIDFSEIPAVLAIMTMGPVAGIAVELLKNIMHWFMSGSPTGVPVGEIANFATGVLFIMPIYFIFNKFKTSIGLAGGLIAGTVSMAIGMSVLNYLLFLPMYTYFMNFPAMAGNELATFIVLGVLPFNLIKGIMLMIISMLLFKSMKKWIAQQRTQLTS
>NZ_CP014616.1|WP_067210431.1|2823904_2824156_+|ferredoxin
MPKYTIVDQDTCIACGACGAAAPDIYDYDDEGIAYVILDDNMGTAEVPEELMEDLEDAFDGCPTDSIKTADAPFDGDALKYED
>NZ_CP014616.1|WP_067210428.1|2822754_2823795_-|hypothetical-protein
MKLSSILLTIIGRIDGERTIYAGLHLLRGKRSGQTLQDVEYYGLKEFFGIVPKLTAERFDEAAKQLSDRGFISTMDDSFVKLTEQGRVEVGKLPSYRFNGWDYRGREMIFFGRLSLVVQTVSNFKAKEKSFMPAQKDRDIQTFVKMLLHNQRISDPVFAKGVSEEIRLCITRSEMDERQKTIITHRLSGFGLTGWTWDQLADNLKLNPFDIRLLFIEGLHMMLAVIILSPDLPFLRKIAESVKVSTYLTDSSVKTKQLFDRGFSLEEIAMARNLKQSTIEDHFVEMSINDTEFPLTQFVSEEDAEAVAGKVKEIGTRRLRLLKSEFETLSYFQLRLILGARTGGGN
>NZ_CP014616.1|WP_067210425.1|2821318_2822755_-|ATP-dependent-DNA-helicase-RecQ
MAIHKLLKERFGFDQFRAGQEDVIRDVIAGKDTIAILPTGIGKSLCYQLPAYVLEGTVLIVSPLVALMEDQVAIMKRNGEKRVVALNSFLSYSEKNRIMGELGSYKFIFISPEMLLQKNVTAHFRNIQLSLIVVDEAHCISQWGFDFRPEYLRLGEFFEGLNRPGILALTATADDKVKADICRYLQLQMPAIHQHSLDRPNISYSIVKVDNGMMKTEWIKNRIVTTAGPGIIYVASRKRADELSQLLQLEGVSVASYHAGKEQEDRAFIQEQFITGEISWICATNAFGMGIHKDDIRQVIHEHVPQAIASYIQEVGRAGRDGDLAAATLLFSSDDEGRTRFIIQDDLPQEWEIKHYKSLLVENYPPAEAAELARISETGKRVIDYYIERMPIEDVIIRMSELIREKEAQLQTMLRLVHSERCIREEILGFFGEACGMKPKFCCSVCGTADGLKLDVQKTIVLDKRMVDWEERLTGLLG
>NZ_CP014616.1|WP_067210423.1|2820462_2821125_-|LysM-peptidoglycan-binding-domain-containing-protein
MKNDDYKTDFEEHRKEIGLDDGHEVSKLPSRSELHRKGRKPKKKSSHTMINVILGLFTLIPVLILVYIISDFYTPGDRTSAKGGETGTLFEMNSEKPVEKTADADKDDEKKATSNEDEKSAVKTEAEAKVEEKPVSKPVVNVNPTPEKKPEVKVETKPEKKPEVKPESKPVAKTHTVGSNENLYRISLKYYGNGGGVEKIKSANGLTSNEIGVGQRLVIP
>NZ_CP014616.1|WP_067210420.1|2819454_2820240_-|hypothetical-protein
MITVNKMIWSSVSLMIGFLIYMFMSARRRNVIYHNMNVASDSQADKKMSVFFISDIHRRKIDDKLLAKVQSAHDIDIVIIGGDLAERGVPLVRIAENIRKLAQLGPLFYVWGNNDREVGEEEMREIITRYGGKILDNESSVIPGHPRWGIAGTDDPSSRNVDIDSTLRVVSQYDNVILVTHTPSLFRKVEQLYEPRLMLAGHTHGGQIRIGKYGLQEKGSFRLKKGRAKLISNGYGTSTLPLRLGAAPECHVIVINYGEVY
>NZ_CP014616.1|WP_067210451.1|2830239_2831424_-|c-type-cytochrome-biogenesis-protein-CcsB
MGLASLSANLLLVSFIAYLVATLFFGGAVKGAKSEASYKNNRWGKIAITITVIGFITHVGYFITRWIASGHAPVSNMFEFTTAFGMMLVGAFILLYYLYRTPSLGLFALPIAIIIIGYASMFPKEITPLIPALKSYWLTVHVITAALGESILAISAVAGLIYLLKNIDLTKKSKQRFWLEAVIFTLILVVGFVLSSSTFKLTGYEAHFTYIDKNEQAAKIEYNYPPLFGMSGYESLTPDAMTPWAEMPPIVNAKTLTTFVWSIASGIILYLILRLIFRRPIAALLQPFAKKANSQLMDEIGYRAVMIGFPIFTLGALIFAMIWAHEAWSRFWGWDPKEVWALITWLFYAAFLHVRLSRGWDGEKSAWLAVIGFVIIMFNLIAVNLIIAGLHSYA
>NZ_CP014616.1|WP_067210454.1|2831423_2833073_-|cytochrome-c-biogenesis-protein-ResB
MSKIKCQCGHDNPFGTVLCERCGRPQTEEAKESKLVDMRYEGAARRSQTYKRSIIDKIWNFFSSVKIGISIIVAVLATAAIGTIFPQKLYVAASTEAEYAAYYERLYGLAGTIYYKLGFHDMYNSWWFITLVGMLGTSIIIASVDRVIPLYKSLKRQRTKRHPSFMKKQRVYGEGPSEDPEAALIKAEGKLKELRYNVKIEDGALLAEKNRFSRWGPYVNHLGLIIFLFGILLRGIPGFYVDETMWIREGETRSIPGAEGYYLESKNFIMENYTKEEADEVFGDALERVGMIAKNYQTDVALYQTPEGGLPGSDEMDFVKEYSIIVNKPLKFDGFNVFQMDFRLDELKSMTFQLTEKATESSLGEFTVDLTNPEREYELDNGARVILSDYYPDYDGIEDGEPKSKSPVPNNPAFIFKMVTPAKPDGEMSFVAIKQTLETEVNDYKVKFVSAETRDISGLTVRKDKTLYLLLLGGIIFMIGVSQGSYWNHRRIWIQKGPNGELLVAGHTNKNWFSLKKELDQVKDVANLPSYEDRQDKESILRDKEVDKV
>NZ_CP014616.1|WP_067210457.1|2833090_2833621_-|thiol-disulfide-oxidoreductase-ResA
MAKADQKKTRLIIRTIVLLLLVSAVVYTIASKDKVKVLAVGDKAPDFELVDLEGNKQRLSDYKGEGVFLNFWGTWCGPCKKEMPYMENQHKAFEEKGVNILAINIAESNLKVETFRDQYGLSFPIAIDKDKSVKEVYNIVPLPTTFLINKDGKIEQIITREMSENEIISLMESIQP
>NZ_CP014616.1|WP_067210459.1|2833880_2834612_-|rRNA-pseudouridine-synthase
MERLQKVLAQAGVASRRKSETLIVAGKVKVNGVVVTELGTKVSSSDRVEVEGVQLVKETYVYFLLYKPRGIISTVDDEKGRKTVLDLFPQIEQRIFPVGRLDYDTSGVIIMTNDGDFSYLMTHPKFGIKKKYIAKVKGIPSREALRKLETGIDLEDGKTAPAHIKMQSVDKKTETALIEITIHEGRNRQVRRMFDAIGCPVQKLRRESFGNVTTHGMNAGEARELTKHEVKQLRVLAETGKIG
>NZ_CP014616.1|WP_067210462.1|2834934_2835936_-|D-alanyl-D-alanine-carboxypeptidase
MKRAIIVVLFFTLLVGGGLKEVAASGQAWAVIDADTGRLLEGHNENVRLPIASLTKIWTAFTFLESVTEPGDVIISPQAASAEGSSLYLPQGMKIEADALLTGLMLRSGNDAARALAEHAGGSMDGFVDLMNDKALLYGLNDTVFSNPSGLHDERHLSTAYETALMLHYAMENDQFRTIATTKNFSYQGEVQAYSWRNKHRLLHSESTAIAGKTGFTKAAGRTLATYFEKDGKNIIVVTLNDGDDWNTHKSLANNVFSSFKLVTVAKKGVYDILPGVEAELSKPIRLLLKKGEKSKLSNVIIIPRGKNEKSTGHWTVSLSNEPLITTEVLIKQ
>NZ_CP014616.1|WP_082786605.1|2835932_2836553_-|SMC-Scp-complex-subunit-ScpB
MSEMEFKDRLPGMIESFLFIVGDEGLTIKQLTSLAERKESEVTEAIDWLRMSYEERKESGIMLKQFGGAYRLVTKADFAEDIKRLLENPSPKSMTQASLEVLAIIAYRQPVTRVEIDDLRGVKSEGPINTLIAKGLIMEKGRSEGSGRAILFGTTDLFLDRFGLASLNGLPPLSQEEEGETVETDLFMTKFQEAFAMENDGGGSIS
>NZ_CP014616.1|WP_067210467.1|2836545_2837295_-|segregation/condensation-protein-A
MTYQVKLEAFEGPLDLLLHLINRLEIDIYDIPMAELTAQYIEHLQAMRVLQLDELSEYLVLAATLIEIKSKMLLPVHEGDEFDDDFDFDMEDDPRDELVARLIEYKKYKDAAISLKESADERSGHFTKPPEDLTEFGEIVASESDESLNVFDLIGAFQKMLNRKRLKAPMIASISKTEVSISEKMDEIMAILEKGGGKCDFYSLFDKGETTDLVVTFLSLLELMKRRDIIVNQEGNFDDLTVSYRREDE
>NZ_CP014616.1|WP_067210470.1|2837340_2837853_+|DUF309-domain-containing-protein
MHPYHHPLFVNFIVYFNGNQDYFECHEVLEEYWKSIPDSDKDHPLTAYILLATGMYHWRRGNKPGASRTLNKAMTKFPTFLANYPKYTEEIDFDQLVYDVTKAVNRLEQDLPFESFPITILSANVTDLASKLEQSMTLLPFGSDAVIHKHMLRDRSDILREREEKKKGRR
>NZ_CP014616.1|WP_067213974.1|2837853_2838216_-|GNAT-family-N-acetyltransferase
MLLRYKKTYEKIAMGLLSYMPGDKTVKKLQEWIQRYETDDSWQLYLLKKDEDFIGLIGIELGEEDYTLQHLSVNPSFRGEGIGQEMVMKLQALFPDKTCIGTEETDLFIQKCKPKEEGSD
>NZ_CP014616.1|WP_067210473.1|2838723_2840052_-|diaminopimelate-decarboxylase
MHLYGTQSVNERGHLTIGGTDTVDLAHTYGTPLNVYDIALFRERASAFKKTFESMGIHAQVAYASKAFSSIAIYEIAEQQGLSLDVVSGGELFTAVSANFPRNRIHFHGNNKSFTELQYAFDEKIGCIVIDNFSEIELVKEIAESRKESMNVLIRVTPGVEASTHDYITTGQEDSKFGFDLKNGQTDEAFLQLYNHPYINLLGMHCHIGSQIFETDAFRLAAEALMNKMVAWRDNYEFICTVLNLGGGFGIRYTEEDKPLEPSVYVEEMATVVLSMTRSHNYPLPEIWIEPGRSLVGDAGTTLYTAGSSKEVPGIRKYVAVDGGMSDNIRPALYGAKYTAVSANRMNEPHVDKVTIAGKCCESGDKLIEEAQLADPTEGDIIAVFCTGAYGYSMASNYNRLPKPAVVFSENGQHQLVVRRETYEDIVRLDIPLQLVRREERI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1116924 : 1126014

Staphylococcus_phage(85.71%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_067206494.1\|1116924_1118370_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	7.4e-71	33.7
WP_067206496.1\|1118714_1119692_-	zinc ABC transporter solute-binding protein	NA	NA	NA	NA
WP_067206498.1\|1119852_1120083_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	3.5e-23	66.7
WP_067206501.1\|1120184_1120634_+	DNA starvation/stationary phase protection protein	A0A0A7RTZ1	Clostridium_phage	1.5e-43	56.8
WP_067206503.1\|1120697_1120880_+	putative motility protein	NA	NA	NA	NA
WP_067206506.1\|1120914_1121277_+\|transposase	transposase	NA	NA	NA	NA
WP_067206508.1\|1121323_1121785_+	NUDIX domain-containing protein	A0A2H4PQM4	Staphylococcus_phage	1.3e-13	33.6
WP_067206511.1\|1121774_1122566_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	2.3e-34	40.4
WP_067206514.1\|1122741_1124328_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	5.4e-192	63.4
WP_067206517.1\|1124817_1126014_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	2.8e-164	73.9

DBSCAN-SWA_2

1154354 : 1163519

Bacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_067206611.1\|1154354_1156511_+	ATP-dependent helicase	A0A1P8CWU5	Bacillus_phage	1.0e-36	26.6
WP_067206613.1\|1156507_1156885_+	CrcB family protein	NA	NA	NA	NA
WP_067206616.1\|1156881_1157244_+	CrcB family protein	A0A2H4PQR0	Staphylococcus_phage	2.4e-10	37.1
WP_067206619.1\|1157303_1159358_+	catalase	A0A2K9L572	Tupanvirus	2.4e-147	50.4
WP_067206622.1\|1159470_1160211_+	thermonuclease	A0A1P8CWK6	Bacillus_phage	1.1e-54	49.6
WP_067206625.1\|1160517_1161378_+	metallophosphoesterase	NA	NA	NA	NA
WP_067206628.1\|1161508_1162156_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.6e-36	35.7
WP_067206631.1\|1162151_1163519_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	5.5e-15	26.3

DBSCAN-SWA_3

2663381 : 2684495

Bacillus_phage(68.42%)

terminase,portal,tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_067210001.1\|2663381_2668001_-	hypothetical protein	Q5YA57	Bacillus_phage	5.6e-112	40.3
WP_067210004.1\|2668003_2668732_-\|tail	phage tail family protein	Q8LTK1	Lactococcus_phage	2.1e-05	23.2
WP_067210007.1\|2668728_2673345_-	tape measure protein	Q5YA61	Bacillus_phage	1.2e-133	38.4
WP_067210010.1\|2673403_2673958_-	hypothetical protein	Q5YA62	Bacillus_phage	4.9e-55	58.4
WP_067210012.1\|2673959_2674418_-	hypothetical protein	Q5YA63	Bacillus_phage	1.2e-51	67.1
WP_067210014.1\|2674500_2674956_-\|tail	phage tail protein	Q5YA64	Bacillus_phage	1.5e-54	73.1
WP_067210017.1\|2674957_2675356_-\|capsid	capsid protein	Q5YA65	Bacillus_phage	4.7e-44	64.1
WP_067210023.1\|2675355_2675682_-\|capsid	capsid protein	Q5YA66	Bacillus_phage	3.3e-27	50.9
WP_082786822.1\|2675681_2676017_-\|capsid	minor capsid protein	Q5YA67	Bacillus_phage	1.7e-47	79.3
WP_067210028.1\|2676016_2676421_-	hypothetical protein	Q5YA68	Bacillus_phage	1.1e-37	61.2
WP_067210031.1\|2676433_2676682_-	hypothetical protein	B5LPR5	Bacillus_virus	4.4e-16	53.2
WP_067210034.1\|2676734_2677625_-\|capsid	capsid protein	A0A1B1P885	Bacillus_phage	1.8e-115	67.1
WP_067210037.1\|2677651_2678302_-	hypothetical protein	B3GW02	Streptococcus_phage	4.9e-30	46.1
WP_067210038.1\|2678405_2678615_-	hypothetical protein	A0A0K2CZA1	Paenibacillus_phage	2.6e-25	84.8
WP_067213963.1\|2678614_2678866_-	DUF2829 domain-containing protein	K4N0H8	Escherichia_phage	3.5e-13	44.4
WP_067210040.1\|2679254_2679461_-	hypothetical protein	NA	NA	NA	NA
WP_067210042.1\|2679476_2680601_-	hypothetical protein	Q5YA73	Bacillus_phage	5.8e-71	38.9
WP_067210045.1\|2680605_2680827_-	hypothetical protein	NA	NA	NA	NA
WP_067210047.1\|2680831_2682325_-\|portal	phage portal protein	A0A1B1P863	Bacillus_phage	5.0e-163	62.0
WP_067210050.1\|2682337_2683648_-\|terminase	PBSX family phage terminase large subunit	B5LPR0	Bacillus_virus	4.8e-186	70.3
WP_067210052.1\|2683628_2684495_-\|terminase	terminase	Q5YA77	Bacillus_phage	2.8e-65	55.9

DBSCAN-SWA_4

2691767 : 2710262

Bacillus_phage(26.67%)

integrase

attL 2692597:2692609|attR 2712653:2712665

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_067210097.1\|2691767_2692250_-	DUF1064 domain-containing protein	A0A1B1P859	Bacillus_phage	2.3e-13	32.9
WP_082786823.1\|2692365_2692563_-	hypothetical protein	A0A0S2SXU6	Bacillus_phage	7.8e-08	68.0
2692597:2692609	attL	NA	NA	NA	NA
WP_067210101.1\|2692673_2692931_-	hypothetical protein	NA	NA	NA	NA
WP_067210102.1\|2692981_2693380_-	hypothetical protein	A0A0S2MVF6	Bacillus_phage	4.7e-36	59.8
WP_067210105.1\|2693424_2693895_-	single-stranded DNA-binding protein	A0A059T5E0	Listeria_phage	1.5e-44	56.9
WP_067210107.1\|2693895_2694726_-	hypothetical protein	A0A2K9V4F4	Staphylococcus_phage	2.2e-43	45.6
WP_156476050.1\|2694747_2694894_-	hypothetical protein	NA	NA	NA	NA
WP_067210109.1\|2695102_2695297_-	hypothetical protein	NA	NA	NA	NA
WP_067210111.1\|2695289_2695874_-	hypothetical protein	NA	NA	NA	NA
WP_082786599.1\|2695886_2696693_-	hypothetical protein	A0A059T7P1	Staphylococcus_phage	2.4e-39	40.7
WP_067210117.1\|2697565_2698264_-	MBL fold metallo-hydrolase	A0A1L2JY21	Aeribacillus_phage	5.0e-81	61.4
WP_067210123.1\|2698722_2699619_-	recombinase RecT	D7RWF9	Brochothrix_phage	1.3e-86	64.2
WP_067210126.1\|2699611_2699812_-	hypothetical protein	NA	NA	NA	NA
WP_067210129.1\|2699808_2701788_-	AAA family ATPase	A0A1L2K2K3	Aeribacillus_phage	3.5e-156	44.9
WP_067210131.1\|2701884_2702070_-	hypothetical protein	NA	NA	NA	NA
WP_067210137.1\|2702337_2702520_-	hypothetical protein	NA	NA	NA	NA
WP_082786600.1\|2702530_2702860_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_067210141.1\|2703005_2703689_-	antirepressor	A5GZ67	Lactococcus_phage	2.9e-33	36.4
WP_067210144.1\|2703763_2703994_+	DUF2188 domain-containing protein	E8ZD70	Streptococcus_phage	1.7e-14	56.2
WP_156476051.1\|2703990_2704140_-	hypothetical protein	NA	NA	NA	NA
WP_156476052.1\|2704159_2704450_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_156476166.1\|2704597_2704795_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_067210152.1\|2705006_2705456_+	helix-turn-helix domain-containing protein	A0A2P1JU09	Anoxybacillus_phage	4.0e-31	48.3
WP_067210154.1\|2705480_2705918_+	ImmA/IrrE family metallo-endopeptidase	D2XR38	Bacillus_phage	5.9e-40	57.1
WP_067210156.1\|2705981_2706746_+	hypothetical protein	X5JB37	Clostridium_phage	2.1e-32	51.0
WP_156476167.1\|2706846_2707491_+	hypothetical protein	NA	NA	NA	NA
WP_067210161.1\|2707687_2708170_+	hypothetical protein	NA	NA	NA	NA
WP_067210164.1\|2708190_2708961_+	DUF1829 domain-containing protein	NA	NA	NA	NA
WP_067210166.1\|2709105_2709324_+	hypothetical protein	NA	NA	NA	NA
WP_082786601.1\|2709644_2710262_+\|integrase	site-specific integrase	S6C485	Thermus_phage	1.4e-18	32.6
2712653:2712665	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP014616

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection