CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP012536	Psychrobacter sp. P11G5 plasmid pPspP11G5c, complete sequence	0 crisprs	NA	0	0
NZ_CP012539	Psychrobacter sp. P11G5 plasmid pPspP11G5f, complete sequence	0 crisprs	NA	0	0
NZ_CP012534	Psychrobacter sp. P11G5 plasmid pPspP11G5a, complete sequence	0 crisprs	NA	0	0
NZ_CP012540	Psychrobacter sp. P11G5 plasmid pPspP11G5g, complete sequence	0 crisprs	NA	0	0
NZ_CP012537	Psychrobacter sp. P11G5 plasmid pPspP11G5d, complete sequence	0 crisprs	NA	0	0
NZ_CP012538	Psychrobacter sp. P11G5 plasmid pPspP11G5e, complete sequence	0 crisprs	NA	0	0
NZ_CP012533	Psychrobacter sp. P11G5 chromosome, complete genome	2 crisprs	DEDDh,csa3,cas3,WYL,RT	3	2
NZ_CP012535	Psychrobacter sp. P11G5 plasmid pPspP11G5b, complete sequence	0 crisprs	NA	0	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012533_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012533_1

2743687-2744194

Orphan

Consensus_repeat	Method
CTTCATCACCGCATAGGTGACTTAGAAA	CRISPRCasFinder
CTTCATCACCGCATAGGTGACTTAGAAA	CRT
CTTCATCACCGCATAGGTGACTTAGAAA	PILER-CR

8 spacers

The CRISPR arrays of NZ_CP012533_1

>merge|NZ_CP012533|1|2743687-2744194|CRISPRCasFinder,CRT,PILER-CR
TAGATATAACGCATAGGTGACTTAGAAAATCACGGTCAATGCGAATTAAGCCACGATAACCTTCATCACCGCATAGGTGACTTAGAAACACCAAATTAATGATGGGCTAAACATAGCTAGCTTCATCACCGCATAGGTGACTTAGAAAATCGTGCTAACAATGCCTTGCGCTTGCTTATCCTTCATCACCGCATAGGTGACTTAGAAAAACCGAATCAAACGGATTAAAACCAGCTAATGCTTCATCACCGCATAGGTGACTTAGAAAATAAAGTATTAACGAATGGCTATGCCCATCACCTTCATCACCGCATAGGTGACTTAGAAATCGTGTAAATCGAGTGGGATAAAATCAAGCATCTTCATCACCGCATAGGTGACTTAGAAAATCAAGAAATATCCAATTTAACACCTGAACAGCTTCATCACCGCATAGGTGACTTAGAAATAGAGTGAAGTTTACACCCGCTGGCGTGGCTACTTCATCACCGCATAGGTGACTTAGAAG

>NZ_CP012533|1|1|2743687-2744194|CRISPRCasFinder
TAGATATAACGCATAGGTGACTTAGAAA	ATCACGGTCAATGCGAATTAAGCCACGATAAC
CTTCATCACCGCATAGGTGACTTAGAAA	CACCAAATTAATGATGGGCTAAACATAGCTAG
CTTCATCACCGCATAGGTGACTTAGAAA	ATCGTGCTAACAATGCCTTGCGCTTGCTTATC
CTTCATCACCGCATAGGTGACTTAGAAA	AACCGAATCAAACGGATTAAAACCAGCTAATG
CTTCATCACCGCATAGGTGACTTAGAAA	ATAAAGTATTAACGAATGGCTATGCCCATCAC
CTTCATCACCGCATAGGTGACTTAGAAA	TCGTGTAAATCGAGTGGGATAAAATCAAGCAT
CTTCATCACCGCATAGGTGACTTAGAAA	ATCAAGAAATATCCAATTTAACACCTGAACAG
CTTCATCACCGCATAGGTGACTTAGAAA	TAGAGTGAAGTTTACACCCGCTGGCGTGGCTA
CTTCATCACCGCATAGGTGACTTAGAAG

>NZ_CP012533|1|1|2743687-2744194|CRT
TAGATATAACGCATAGGTGACTTAGAAA	ATCACGGTCAATGCGAATTAAGCCACGATAAC
CTTCATCACCGCATAGGTGACTTAGAAA	CACCAAATTAATGATGGGCTAAACATAGCTAG
CTTCATCACCGCATAGGTGACTTAGAAA	ATCGTGCTAACAATGCCTTGCGCTTGCTTATC
CTTCATCACCGCATAGGTGACTTAGAAA	AACCGAATCAAACGGATTAAAACCAGCTAATG
CTTCATCACCGCATAGGTGACTTAGAAA	ATAAAGTATTAACGAATGGCTATGCCCATCAC
CTTCATCACCGCATAGGTGACTTAGAAA	TCGTGTAAATCGAGTGGGATAAAATCAAGCAT
CTTCATCACCGCATAGGTGACTTAGAAA	ATCAAGAAATATCCAATTTAACACCTGAACAG
CTTCATCACCGCATAGGTGACTTAGAAA	TAGAGTGAAGTTTACACCCGCTGGCGTGGCTA
CTTCATCACCGCATAGGTGACTTAGAAG

>NZ_CP012533|1|1|2743747-2744194|PILER-CR
CTTCATCACCGCATAGGTGACTTAGAAA	CACCAAATTAATGATGGGCTAAACATAGCTAG
CTTCATCACCGCATAGGTGACTTAGAAA	ATCGTGCTAACAATGCCTTGCGCTTGCTTATC
CTTCATCACCGCATAGGTGACTTAGAAA	AACCGAATCAAACGGATTAAAACCAGCTAATG
CTTCATCACCGCATAGGTGACTTAGAAA	ATAAAGTATTAACGAATGGCTATGCCCATCAC
CTTCATCACCGCATAGGTGACTTAGAAA	TCGTGTAAATCGAGTGGGATAAAATCAAGCAT
CTTCATCACCGCATAGGTGACTTAGAAA	ATCAAGAAATATCCAATTTAACACCTGAACAG
CTTCATCACCGCATAGGTGACTTAGAAA	TAGAGTGAAGTTTACACCCGCTGGCGTGGCTA
CTTCATCACCGCATAGGTGACTTAGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012533.1\|WP_020444588.1\|2741473_2742733_+\|ferredoxin-reductase-family-protein	unknown	unknown	gnl\|CDD\|99795
NZ_CP012533.1\|WP_011959966.1\|2744636_2744927_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012533.1\|WP_068037383.1\|2747194_2749447_-\|DUF3488-domain-containing-transglutaminase-family-protein	unknown	unknown	gnl\|CDD\|378784
NZ_CP012533.1\|WP_082787241.1\|2740547_2741153_-\|cytochrome-B	unknown	unknown	gnl\|CDD\|226184
NZ_CP012533.1\|WP_082787242.1\|2751814_2752360_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|226005
NZ_CP012533.1\|WP_011959968.1\|2743116_2743383_-\|Serine-protease-inhibitor-like-protein	unknown	unknown	gnl\|CDD\|381043
NZ_CP012533.1\|WP_020444568.1\|2739853_2740528_-\|response-regulator	unknown	unknown	gnl\|CDD\|182387
NZ_CP012533.1\|WP_068039369.1\|2749443_2750472_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224635
NZ_CP012533.1\|WP_068037385.1\|2750590_2751631_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|285027
NZ_CP012533.1\|WP_011959977.1\|2734660_2735362_-\|VIT-family-protein	unknown	unknown	gnl\|CDD\|153123
NZ_CP012533.1\|WP_068037382.1\|2746496_2746721_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379188
NZ_CP012533.1\|WP_068037386.1\|2752582_2754667_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|376350
NZ_CP012533.1\|WP_011959973.1\|2737635_2738226_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377032
NZ_CP012533.1\|WP_020444569.1\|2737328_2737643_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012533.1\|WP_011959964.1\|2746131_2746347_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012533.1\|WP_011959976.1\|2735443_2736127_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226582
NZ_CP012533.1\|WP_068037380.1\|2744302_2744623_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012533.1\|WP_011959972.1\|2738325_2739789_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|182388
NZ_CP012533.1\|WP_011959975.1\|2736190_2737273_-\|FAD:protein-FMN-transferase	unknown	unknown	gnl\|CDD\|224394
NZ_CP012533.1\|WP_041773283.1\|2744929_2746120_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189

Protein	Function_ID	Function_description	E-value
NZ_CP012533.1\|WP_020444588.1\|2741473_2742733_+\|ferredoxin-reductase-family-protein	gnl\|CDD\|99795	cd06198, FNR_like_3, NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.	3.38801e-63
NZ_CP012533.1\|WP_068037383.1\|2747194_2749447_-\|DUF3488-domain-containing-transglutaminase-family-protein	gnl\|CDD\|378784	pfam11992, DUF3488, Domain of unknown function (DUF3488). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with pfam01841. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.	6.12457e-98
NZ_CP012533.1\|WP_082787241.1\|2740547_2741153_-\|cytochrome-B	gnl\|CDD\|226184	COG3658, COG3658, Cytochrome b [Energy production and conversion].	4.47383e-49
NZ_CP012533.1\|WP_082787242.1\|2751814_2752360_-\|c-type-cytochrome	gnl\|CDD\|226005	COG3474, COG3474, Cytochrome c2 [Energy production and conversion].	4.42653e-24
NZ_CP012533.1\|WP_011959968.1\|2743116_2743383_-\|Serine-protease-inhibitor-like-protein	gnl\|CDD\|381043	cd19577, serpinJ_IRS-2-like, serpin family J, Ixodes ricinus serpin-2 (IRS-2). The serpin family J clade contains serpins from the Chelicerates. This model includes serpins from the Japanese horseshoe crab, mites, ticks, and spiders. The Limulus intracellular coagulation inhibitor, designated LICI, was isolated from hemocytes of the Japanese horseshoe crab. It blocks the amidolytic activities of Limulus lipopolysaccharide-sensitive serine protease, factor C and also inhibits human alpha-thrombin, rat salivary kallikrein, bovine plasmin, and trypsin but not Limulus clotting enzyme, Limulus factor B, bovine factor Xa, human factor XIa, human tissue plasminogen activator, human urokinase, chymotrypsin, elastase, and papain. Glycosaminoglycans such as heparin and heparan sulfate had no effect on the inhibitory activity. The castor bean tick, Ixodes ricinus serpin-2 (IRS-2) whose structure has been solved, unlike that of the LICI, is found in the saliva of the tick and primarily targets 2 proinflammatory serine proteases: cathepsin G and mast cell chymase, and in higher molar excess, thrombin. It also blocks cathepsin G- and thrombin-induced platelet aggregation. Thus it has a dual role and can interfere with both inflammation and wound healing during tick feeding. In general, SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants have been associated with blood clotting disorders, emphysema, cirrhosis, and dementia. A classification based on evolutionary relatedness has resulted in the assignment of serpins to 16 clades designated A-P along with some orphans.	6.65815e-36
NZ_CP012533.1\|WP_011959976.1\|2735443_2736127_-\|hypothetical-protein	gnl\|CDD\|226582	COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport and metabolism].	1.67971e-11
NZ_CP012533.1\|WP_068039369.1\|2749443_2750472_-\|hypothetical-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	2.9928e-08
NZ_CP012533.1\|WP_068037385.1\|2750590_2751631_-\|AAA-family-ATPase	gnl\|CDD\|285027	pfam07726, AAA_3, ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.	5.81758e-83
NZ_CP012533.1\|WP_011959977.1\|2734660_2735362_-\|VIT-family-protein	gnl\|CDD\|153123	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter. .	6.66566e-98
NZ_CP012533.1\|WP_011959975.1\|2736190_2737273_-\|FAD:protein-FMN-transferase	gnl\|CDD\|224394	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism].	1.7678e-48
NZ_CP012533.1\|WP_011959973.1\|2737635_2738226_-\|hypothetical-protein	gnl\|CDD\|377032	pfam03413, PepSY, Peptidase propeptide and YPEB domain. This region is likely to have an protease inhibitory function (personal obs:C Yeats). This model is likely to miss some members of this family as the separation from signal to noise is not clear. The name is derived from Peptidase & Bacillus subtilis YPEB.	0.00235304
NZ_CP012533.1\|WP_068037386.1\|2752582_2754667_-\|EAL-domain-containing-protein	gnl\|CDD\|376350	pfam00563, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site.	3.89452e-36
NZ_CP012533.1\|WP_020444568.1\|2739853_2740528_-\|response-regulator	gnl\|CDD\|182387	PRK10336, PRK10336, two-component system response regulator QseB.	1.94819e-81
NZ_CP012533.1\|WP_011959972.1\|2738325_2739789_-\|histidine-kinase	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	5.96523e-111
NZ_CP012533.1\|WP_068037382.1\|2746496_2746721_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	1.56936e-20
NZ_CP012533.1\|WP_041773283.1\|2744929_2746120_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.20276e-34

>NZ_CP012533.1|WP_011959968.1|2743116_2743383_-|Serine-protease-inhibitor-like-protein
MGMPIAFDSRANYSLFNDKLPLKVDSVIHKAVVEVDEKGTVAAAATGIGVQLVMATHKAEITADHPFMFMIKDNKTDAILFLGQVNKL
>NZ_CP012533.1|WP_020444588.1|2741473_2742733_+|ferredoxin-reductase-family-protein
MALKSWQVIGSVVLITSITVLMQISSETWITSATVSLIMGASALACMASSCILASRWHGIERLFGGLDRVYEAHKWIAIWALIFAVYHFVFKAKLDAWDLAPILELSKYWTRLMRQLSLVALGLIILLALNRKIPYGNWRWLHKFSGPLFLIVILHWLSFESPITLTSPAGIWLALLCSVGVIAALYKMILYPFIAKAGEYKLVAISQGKAAVHLEFEPVRKGFQFKAGQFAFISLKEPGLHEPHPFTIANAPSDTGHIHFVIRALGDYTKKLNEQAKVGMLADIYAPHGNFKRISNAEREIWIGAGVGISPFISWQEDKTIGHFERATLIYCFDPARVFPSVERMQEMTEQSGVDFVANPSGSNAMAETIRQVASEVNPKQIQISFCGPKGLLGKVQELMKENGIPAKNIHYEFFDFR
>NZ_CP012533.1|WP_082787241.1|2740547_2741153_-|cytochrome-B
MSQKDIINWDNSSAHVPNMPKARQVKVWDLLVRVTHWTVAAGIIANLFFTEDGGEWHEYVGYTVLGLVVIRLLWGLVGTRYARFTGFFPTPKRLKRHVSDLSVRRVDEQNLGHNPLAALMMLSLWAVTIGLGLTGYLMEAGLFGDKEVLEEIHELLANSLYLLVPLHIIAAIAMSYWQRQNLIKSMITGKKTVTDKPTTMK
>NZ_CP012533.1|WP_020444568.1|2739853_2740528_-|response-regulator
MARILLIEDDSTIADGIVLGLKSHGMMVDWFGDAKQGEMALQDGMFDAVLLDLTLPKGDGMTVLKNWREKHIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVIARLQALMRRSQGRCQPEVRYGEVAYQPQNQQVSYQGKMVELTIKEVAILEQMLTHPKQIHSRASLEDKLYGWQQDIESNAIEVHIHHLRKKLGNDFILTKRGIGYYLNPVHNHH
>NZ_CP012533.1|WP_011959972.1|2738325_2739789_-|histidine-kinase
MKSIQQRLLTSLLIGLPLLWVLTSSFIAWKLWHEINEMNDTQITQVARYLIGVAPKEEDDKDHHRQRDDNKKHTPKIYALKSKQLSGDLGEAEDDYMGFAIWDKKGRLLMADENGQSFAFLPDQHGFLEEHDSAYQRLNPFSKRWRLFYVHDDHDYEGRVIAVGQNLKSRREMITDAMSVQVLPMLIGLFAFMGLVVWLIRRGFMPLTQISSALEQRQPQDDSPITADVPKEIQPLVSALNVLFVKVADTLAREQRFTADASHELRSPLAALKLQADLLQQQILQLSGVEDDNQLFYHAQNISNGIERATHLVDQLLILAKIEPQQQLPPEQLESPDWLMLTDIVLSDVNRLAREKHMQLKRTVNCDNPADILPILINPILFKLLIRNLLDNAIRYCPEGALIELQLDTNAIRVVDNGSGVEPEQLTRLSERFYRPAGQSQLGSGLGLSIANRIAELHGLTLEFANRSQPETGFIVTIRHKKAISSI
>NZ_CP012533.1|WP_011959973.1|2737635_2738226_-|hypothetical-protein
MSLPLLKPLLLTVGATSLVFFGGVIALSVQSPSADDALSAANAMSQNTDITSISSDLSSFKAVANPLTQSPFANPSPLAALTATQATALAQQDAPNSVLQASPELVNYNGTVAYEVLLDSGATYIDASVGTVLNPVATNDYRAERFDDDDYEDKHHDDDKRKEDKHRKAHDKKYYKENDRLIAMSYQQHDEEEYDD
>NZ_CP012533.1|WP_020444569.1|2737328_2737643_-|hypothetical-protein
MTNTKSHSTPAVKKTAKKADPFAALKSSIMMVSIAGTMAGWLVLLNQEQKTAPVSTAIISTAVAESDERAVTPTPIADINQLRQVNAVAPVEVIRVVARTRSSQ
>NZ_CP012533.1|WP_011959975.1|2736190_2737273_-|FAD:protein-FMN-transferase
MHTNMSNQTTPQLATIKLFAMGCHIQISLNTTRLSAQPSQMRIDQQVAFLTNDIQQRLADWEHIFSRFDDSSELMRLNNRGDQWSEVSSELFEVLQRAIHFVSKTQGLVTPTLLHPLWDAGYKHSFETLPKMSVPSLPVTSVSTPTNVQDTTSANHANQQIEGIQLRQLADRQHQVYLPAGMALDLNGYVKGWCAMQLAENISRVHDWHIPCLVDMGGDIAIGVPKNPTDKPVSWGVAVAKPYFANSEHVHNDEDVAILKLSSGAVATSGQDYRRWLHDGRWQHHLIHPHDLRPVTSDVLTATVLAKDAMTAEVYAKYCVLLGVKAAVAWLNKHHIAALLIDRDNKVMVTSAMRPNLLAS
>NZ_CP012533.1|WP_011959976.1|2735443_2736127_-|hypothetical-protein
MHTDHPTSSHTASNTNVLTQALWVGLTLSIAIGVGGYASLTWGETVSQLLTSTDKHFWYLSRASGVIAYTLFWLAVIFGLLLSTRLGKRFNAARVFVLHQYLSLIAVGFAAFHAGILLADNFLNLNLWQVLMPFGFQTERVGVALGQLGFWFLFICAFSFYIKQYIGQSAWRWLHFLTFMAYMFISIHVFMVGSDSRALPLLLFYAGSQTIVFLLITYRIIALKQAR
>NZ_CP012533.1|WP_011959977.1|2734660_2735362_-|VIT-family-protein
MHHSIHDEAHLSNRNHWLRAAVLGANDGLISTASLLVGVAAASANSQTLLLTGMAALTAGALSMAAGEYISVSSQADTEKADLDKELHELTHNAERELFELTKIYEKRGLDHVLAHQVAIALTEHDALEAHARDEIGLTDLSQAKPIHASVASGLSFIAGAILPIIGILLLPAQTLVWSLATLTIVGLALLGIISARLGGAPVIPATSRVVIWGVLAMVATSLIGRLFGVAAL
>NZ_CP012533.1|WP_068037380.1|2744302_2744623_-|hypothetical-protein
MSVNFVFDSSLDDVAKRLCYQYWSYVSPNDYIAHLKILCYDYNIRSDELFATLAKCQVYLGDIHCEYCGRPYQLDVPADIPHARQHKSWFCDGCISFSGGQLTVSR
>NZ_CP012533.1|WP_011959966.1|2744636_2744927_-|hypothetical-protein
MKIIDYDKLFAEFKPNGYVSEDAHTIANMLIYDLCIQPGYNLARFLEIKPCFDNHMAIRIWVQKRLDASLGYLVDDMYVQLQSEIYELLPPSGYGY
>NZ_CP012533.1|WP_041773283.1|2744929_2746120_-|site-specific-integrase
MASIRSRNKRLIVDFYYMGKRCRETTNLIDTPANRKKLESIILNMEAEIRLGIFNYAKYFPKSDKAAEMVALNDRKECINTNVPSFKQFATLWFSEKEIEWRDTYKRKIQEIIDMYLLPEFGTKPIHLIKKTDVLAFRSSLGKVTYGKANKHLSAARINSIMVPLGMILKEAAKRYKFDNPYYDIKALKQPKTDIQPLTLEEVWTFINGVREDYRHYYLVRFFTGMRTSEIDGLTWDNVDFNRREIVIKQALVKGKIVPPKTQESYRAIQMSPWVYDALKEQKEISYRRSDYVFCSHTGEPLDYNNVNKRIWHPTLKVLRLKKRNAYQTRHTAATLWLAAGESPEWIASQMGHSTTKMLFNTYSRYVPNMTRQDGSAFEALVNRSQMAQLSTDKET
>NZ_CP012533.1|WP_011959964.1|2746131_2746347_-|hypothetical-protein
MSHTYLTTQELSERIKYNPRTIRNELKDSVLIEGIHYIRPFGGRKILYVWEEIEKDMRTGITGSINAMALQ
>NZ_CP012533.1|WP_068037382.1|2746496_2746721_+|helix-turn-helix-transcriptional-regulator
MIVSNLPVLLAERRMKVADLIRMTGISKSTMHKIYNEQTSRIDFETMDKICEALDVGVGELFTYIPNEASEEVK
>NZ_CP012533.1|WP_068037383.1|2747194_2749447_-|DUF3488-domain-containing-transglutaminase-family-protein
MIDSKRARNPSSNISLPNSSAFAAVTSPASFENLALGNTANNSYNPNRKWYRKLLALPAYYWVLLTQVIVILPHAAHLPLWLMVFALITIIAQLPYIKAKFKQRFKQLRHLKRMYQSMQMLGFLLGLVGLWLTYNTSFGLDMGVAFLVLCLISKLWELYKRRDAYVVLNLSLFVLAALFLMNQGLVTTLEVIIGTIVILLAFIALNDDGNIRGDGRLRTLGILGVGALPLLVVLFLFFPRLPPLWSVQLSGQQATTGVSDSMSPGDFANLSQSTALAFRVEFADETPPQHELYWRGLVFSDFDGVTWRPNRSTQQQWQPTKQIPVWIEQALATVPDEVQLAPNNYEVILEPTQQNWLFGLDYPFTQRTDVSITSEFTLLKDLPVTQQLRYNVLRFAPMRIDPVLDKSSRRINLALPNDGNPQARALAQQLFAQSGSDPVRYMQALERWINQTEFRYTLSPPRLNDNRIDEFLFDTKAGFCEHYSSSFTFMMRAAGVPARVVAGYQGGELSRGGNVWEVRQMDAHAWTEVWLDGQGWVRVDPTAFVAPERVEQGMDALTQTQGAALFGDGAGAQISYQQYQMLQTLRRLSDQASYYWQKDVVGYDQDKQAGSLLKWFNISSFMQQIVWLTASAIVVISVLVLIIWQRRRKRWHPADLPLAKLSKRISKNDKLLARDESEGQLAWLDRLADSLAAPDNILMADNLTFTRQHIDNIKQDYRQLRYGRLSTLDASNAKYQRALKQLKENVCRLL
>NZ_CP012533.1|WP_068039369.1|2749443_2750472_-|hypothetical-protein
MARWFAKRAPKSDSATLNLRNVYIFFRREGLLFAVLLMITFIAGINYGNNLVLGLCFYLISIWLISFHMTFLHISGLQVQLLEVTMAEVGAPVWVTLQVRSESRQPRRQLMFRFEQHQLDKQENNEHDHKRNSKRSRKLLNNDPKLQVLLPRVQGEQIIRLPIITYKRGQLELPRLTVSTVYPLGIMRAWSYVYFARTAWVYPKPSAFDWQTQYVTASLDDLPTGGQYSQHIQGQDDFERLDSYIEGESLARVSWAHVARGQGMLTKHFADPVGVEQVLDYADMPAAHHEQKLAQLAHGAITLGSLGVPFTMQLPNESHTESAIGHGEAFAQVCLLRLAQSS
>NZ_CP012533.1|WP_068037385.1|2750590_2751631_-|AAA-family-ATPase
MHQNHAYDLSSHKNTVSQLESDFGLEHSSNTTANYLANQRQVAQLLVQLNQVVLDKPQVVKLALSCVLAGGHLLLQDLPGMGKTTLAQGLAQLLGLSFNRVQFTNDMLPADILGMSIYNQTTQSFEFRKGPIFTQLLLADEINRSSPKTQSALLEAMEEHQVTQDGQTYRLPKPFFVIATQNPMQQAGAYPLPESQLDRFLMCLSLGYPSPTAERALLRGQDRRELLASLDAMLATDAVLLARQGVQQVYVADVVLDYLQRLVAKTRISQEYHGLSPRGVLSLQRAAQAHAYVSGHQEVSPEDIQAVFTAVTDHRLGQRFVPSHVVGGQAPQTIAQRIINEVTVIV
>NZ_CP012533.1|WP_082787242.1|2751814_2752360_-|c-type-cytochrome
MPINVNIALGGILIATFSLTACERTPPDYRDPVTLPVYSVGDADNGAIIYEEACGQCHQLNPGSNKKGPQLMNIYGAPAAELEDYDYGTALTSSGWVWDAETLDPYIADAQKAMPDSKMLSDPMPDADERADIIAYLSTLRMTAPIVDSDGNQVVKAKHTQMNNEAVEIPAGAENKPAASY
>NZ_CP012533.1|WP_068037386.1|2752582_2754667_-|EAL-domain-containing-protein
MRTKSILNLLVIDEDQLYAERLVSLLSAYYDEVNLGFLDDKEELLKSLRHQWDVLVFGRAYDLSFTDVVGIVQEQNLDLPIIGLMSDEMAGTGRNDDGLPAVIDGVMVKALLAEKEVQVVMAICLQHANLRSLRQLNTLRYVLSEAEQRANILIKNSKSAVAYIDQGIHIFANDPYLQLFNFESMDDIIGLPVIDFIAGKDNVKGFKEFLRQFDKGNREQVEFNFESKRMDGSTFEAKLQLAAATLDGEPVTQIIIQQNNNNSAEIAKRLAVAERQDSLTGLNNRRGFEERFEALHQSVLEGKVRAGLLYIQLDNIGKISSSLGLQGVDATVQQVARMLEQTVADGHISRFSDTAFTVLVEGLSSQALIELAESVRQHISDMLIEVDERTTNTTVSIGIVKMDANAAEPQILLERAIDAINHIRIETANHGNAYHLYDPSEHANSDDSALAEYLVSAITHNRFELFFQPIYDINQDRSDFFEVYLRLPLADADNTVLTPDKFMTVAKTHHLREKIDRWILINACKQLNEVRKTHPEARILVQLTSASLIDKKLPSVASQLIKAVGGVSGALTLQFNEQDVANHLTIAKSQFAALSDISCQVGIHNFGTSAKSIEIAEFVQPDMTRLAREYVNEISKPDNLDAIKSLIVRTNELNIDVLMPYIEEAATMSVSWSVGARYLQGYYLEMPNKTMNVV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP012533_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012533_2

3301472-3301613

Unclear

Consensus_repeat	Method
CTAGTATGATAGATAATTACTAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP012533_2

>merge|NZ_CP012533|2|3301472-3301613|PILER-CR
AGTATGATAGCTAATTACTAAATATTAAGCTCAATAAGTAAGATTAACTAAACTAGTATGATAGGTAATTATTATTAGCCATTTACAGCTTCTATATTTATCAAGGATTTAGAACATTTCTAGTATGATAGATAATTACTCA

>NZ_CP012533|2|2|3301472-3301613|PILER-CR
AGTATGATAGCTAATTACTAAAT	ATTAAGCTCAATAAGTAAGATTAACTAAACT
AGTATGATAGGTAATTATTATTA	GCCATTTACAGCTTCTATATTTATCAAGGATTTAGAACATTTCTAGTA
TGATAGATAATTACTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012533.1\|WP_149031865.1\|3303233_3303602_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012533.1\|WP_068038552.1\|3295016_3295802_-\|crotonobetainyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|179599
NZ_CP012533.1\|WP_068038526.1\|3288067_3288649_+\|phosphatidylglycerophosphatase-A	unknown	unknown	gnl\|CDD\|133477
NZ_CP012533.1\|WP_068038574.1\|3304821_3305349_-\|flavin-reductase	unknown	unknown	gnl\|CDD\|132654
NZ_CP012533.1\|WP_068038530.1\|3288805_3290188_+\|UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224128
NZ_CP012533.1\|WP_068038541.1\|3292615_3293572_+\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
NZ_CP012533.1\|WP_068038533.1\|3290368_3292213_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_CP012533.1\|WP_068038577.1\|3305513_3306542_-\|methionine-synthase	unknown	unknown	gnl\|CDD\|181659
NZ_CP012533.1\|WP_068038580.1\|3306595_3307633_-\|DUF1852-domain-containing-protein	unknown	unknown	gnl\|CDD\|370181
NZ_CP012533.1\|WP_068038591.1\|3310570_3313681_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP012533.1\|WP_068038583.1\|3308534_3309629_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379596
NZ_CP012533.1\|WP_068038561.1\|3299569_3301198_+\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|376718
NZ_CP012533.1\|WP_068038570.1\|3303770_3304604_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_CP012533.1\|WP_068038545.1\|3293613_3294204_-\|carnitine-operon-protein-CaiE	unknown	unknown	gnl\|CDD\|184189
NZ_CP012533.1\|WP_068038588.1\|3309704_3310427_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012533.1\|WP_068038555.1\|3296083_3297250_+\|acyl-CoA/acyl-ACP-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
NZ_CP012533.1\|WP_082787297.1\|3302018_3302777_+\|tRNA-pseudouridine(65)-synthase-TruC	unknown	unknown	gnl\|CDD\|211333
NZ_CP012533.1\|WP_068038593.1\|3313677_3314961_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP012533.1\|WP_068038549.1\|3294220_3295003_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187627
NZ_CP012533.1\|WP_068038559.1\|3297312_3299406_+\|acetate--CoA-ligase-family-protein	unknown	unknown	gnl\|CDD\|223972

Protein	Function_ID	Function_description	E-value
NZ_CP012533.1\|WP_068038593.1\|3313677_3314961_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	7.35338e-50
NZ_CP012533.1\|WP_068038552.1\|3295016_3295802_-\|crotonobetainyl-CoA-hydratase	gnl\|CDD\|179599	PRK03580, PRK03580, crotonobetainyl-CoA hydratase.	9.15299e-129
NZ_CP012533.1\|WP_068038526.1\|3288067_3288649_+\|phosphatidylglycerophosphatase-A	gnl\|CDD\|133477	cd06971, PgpA, Phosphatidylglycerophosphatase A; a bacterial membrane-associated enzyme involved in lipid metabolism. Phosphatidylglycerophosphatase A domain represents a family of bacterial membrane-associated enzymes involved in lipid metabolism. The prototype of this CD is a putative Phosphatidylglycerophosphatase A (PGPase A) from Listeria monocytogenes. PGPase A (EC: 3.1.3.27), encoded by the gene pgpA, specifically catalyzes the formation of phosphatidylglycerol from phosphatidyl glycerophosphate (PGP). It requires Mg2+ for activity and is inhibited by sulfhydryl agents and freezing/thawing. PGPase B encoded from pgpB is not included in this family, which also acts on phosphatidic acid (PA) and lysophosphatidic acid (LPA). Aside from PGPase A and B, evidence shows that there is another PGPase existing in E. coli. Thus, PGPase A is not essential for PGPase activity in E. coli.	2.89371e-45
NZ_CP012533.1\|WP_068038574.1\|3304821_3305349_-\|flavin-reductase	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	1.87349e-65
NZ_CP012533.1\|WP_068038530.1\|3288805_3290188_+\|UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase	gnl\|CDD\|224128	COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane].	0
NZ_CP012533.1\|WP_068038541.1\|3292615_3293572_+\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	3.30266e-113
NZ_CP012533.1\|WP_068038533.1\|3290368_3292213_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_CP012533.1\|WP_068038577.1\|3305513_3306542_-\|methionine-synthase	gnl\|CDD\|181659	PRK09121, PRK09121, methionine synthase.	0
NZ_CP012533.1\|WP_068038580.1\|3306595_3307633_-\|DUF1852-domain-containing-protein	gnl\|CDD\|370181	pfam08908, DUF1852, Domain of unknown function (DUF1852). This family of proteins are functionally uncharacterized.	0
NZ_CP012533.1\|WP_068038591.1\|3310570_3313681_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP012533.1\|WP_068038583.1\|3308534_3309629_+\|hypothetical-protein	gnl\|CDD\|379596	pfam14397, ATPgrasp_ST, Sugar-transfer associated ATP-grasp. A member of the ATP-grasp fold predicted to be involved in the biosynthesis of cell surface polysaccharides.	2.39191e-43
NZ_CP012533.1\|WP_068038561.1\|3299569_3301198_+\|BCCT-family-transporter	gnl\|CDD\|376718	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter.	3.80896e-177
NZ_CP012533.1\|WP_068038570.1\|3303770_3304604_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	4.06262e-35
NZ_CP012533.1\|WP_068038545.1\|3293613_3294204_-\|carnitine-operon-protein-CaiE	gnl\|CDD\|184189	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.	9.00521e-131
NZ_CP012533.1\|WP_068038555.1\|3296083_3297250_+\|acyl-CoA/acyl-ACP-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	8.88434e-95
NZ_CP012533.1\|WP_082787297.1\|3302018_3302777_+\|tRNA-pseudouridine(65)-synthase-TruC	gnl\|CDD\|211333	cd02563, PseudoU_synth_TruC, tRNA pseudouridine isomerase C. Pseudouridine synthases catalyze the isomerization of specific uridines in an tRNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. TruC makes psi65 in tRNAs. This psi residue is not universally conserved.	4.24133e-135
NZ_CP012533.1\|WP_068038549.1\|3294220_3295003_-\|SDR-family-oxidoreductase	gnl\|CDD\|187627	cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR. TTER is a peroxisomal protein with a proposed role in fatty acid elongation. Fatty acid synthesis is known to occur in the both endoplasmic reticulum and mitochondria; peroxisomal TER has been proposed as an additional fatty acid elongation system, it reduces the double bond at C-2 as the last step of elongation. This system resembles the mitochondrial system in that acetyl-CoA is used as a carbon donor. TER may also function in phytol metabolism, reducting phytenoyl-CoA to phytanoyl-CoA in peroxisomes. DECR processes double bonds in fatty acids to increase their utility in fatty acid metabolism; it reduces 2,4-dienoyl-CoA to an enoyl-CoA. DECR is active in mitochondria and peroxisomes. This subgroup has the Gly-rich NAD-binding motif of the classical SDR family, but does not display strong identity to the canonical active site tetrad, and lacks the characteristic Tyr at the usual position. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	4.2235e-87
NZ_CP012533.1\|WP_068038559.1\|3297312_3299406_+\|acetate--CoA-ligase-family-protein	gnl\|CDD\|223972	COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion].	3.92086e-124

>NZ_CP012533.1|WP_068038561.1|3299569_3301198_+|BCCT-family-transporter
MNTVQKNNKLTIDPGIFWSSIIAILAASIPLALYPEAGKAAVDGLLSSFTGTFGWLYLLTGIGSFFFMVWLAYGPLGRIKMGAPDEQPEFRTVPWIAMLFCAGIGISICNWAFVEPLYLFSGPPLGIEGGTTEAAEWAAMYPMFHWGVVPWALYLMPALPMAYVLYVRKVNVLRLSEACRGILGKAVDGPIGKLIDVIVIFSIVGGVGTSLGLSVPLVSALFQEMFGLADSFGLQMGILTAWTAMIAWSVYNGLNKGIQTLSNINAALGFLLLFFVLIVGPTIFLLNLWTNSVGLFLDNFFRINFWTDPVAKGGFPESWTIFYWAWWIAYAPMMGLFVARISRGRTIKNIIVNGVVWGTLGCWAFFAIWGGYAIDLQLSGAVDLQTILSSDGIPATVVAILKTLPVAWLVIPLFTLLCFVFLATTVDSSAYMLASICTKELTGYEEPARWNRILWTLMLALVGVGLLSVGGLKAVQTSTILVALPMIPVLIIMSASLVRWAYRDFGAELSPYAIARCQVQGKTVVVQQYDDGKKVTLDDGKE
>NZ_CP012533.1|WP_068038559.1|3297312_3299406_+|acetate--CoA-ligase-family-protein
MTKQENLQRLLSPRSIVFIGGSNLALPIQNTRDIGFDGEIWVVNPKYDEIADIPCFASIDDLPGTPDAAFVSINAKLTVQAVADLNKSGCGGVVCYAAGFAEVGNNGDELQDSLIEAAGDMALVGPNCYGLLNFTNGVALWPDRLCGERTDKGVAIISQSGNVALNLTMHGRSLSITHVISVGNQAVLGAGDYIEPLLEDDRVTAIGFYIEGLKDIETFSRAALKALEKGVPLVVLKAGTSEIGTQLTMSHTSSLAGSDDMYQAMFDRLGILRVHSLSELLETLKIASLCELPKGDRIGVLTCSGGDSAMLADSLDHYKLQLPSLSKVQEQKLGEWLPDFASLSNPLDYNTSIWGNLEACTEVFGIMMEGDCDATVLALDFPKQGIGDDHEWQVAVDSLIAAHANHPKTCAVISNLSELMPENARQRLAKAGIAPLQSLKDGVAALARLVRYGERRRQVAAMDDPEQLLLRGPLLVEGESKMLDEWASKQLVGRYGLQLPGGRCVNKADVVEAADEVGYPVVMKGVSDRLAHKTEAGAVMLNLKDGSAVASAVEVMAGRLAEQGLADARFLIEPMISDFVGELIIGLKRDEQFGLALIVGTGGILVNLLNDSAIMLLPITREAASTAVLSLKSSALLRGFRGHPEGDLEAVVDAIMAVADFAMDHWDSVTELDINPLMVRPKGKGAVAADALVRLQQ
>NZ_CP012533.1|WP_068038555.1|3296083_3297250_+|acyl-CoA/acyl-ACP-dehydrogenase
MDFNLSKEHLELQAKAKEFTETVLFPHEMECEENDGISRETHQKIIDATLAWGFNAPNHSKEDGGQGFSIFEQTILNEQLGKATGAIWDALWYPSYPMRFATQAQKEEYLIPTCQGKRRDAYAITEADAGSDPTQCMTRADKVEGGWKINGEKWFVTIGDIADYILVHAHVDGDSTKPTVFFVEKNLPGVELKRTPLYTHHFAFKHPEYIFNDVIVGEDKILGEIGQGYDMTKDWFVEARLGIAARCVGGAIRAAEEANKFAAERIQFGQPINNFQAIEFMLADMGVEIMAAKSMLYRLSWEIDQTSDRKLNHARAAALKLYCSEMVGRVCDKAVQILGGRGYMREQAVERLWRDTRVDRIWEGTSEIQRVIISGQIKKRGLDIYTGW
>NZ_CP012533.1|WP_068038552.1|3295016_3295802_-|crotonobetainyl-CoA-hydratase
MSVSVHTEHRGSALLITLNRPKANAIDCATSFELYEALAEFEQNPSLQVAIITGAGQRFFSAGWDLKGAAAGEAVDAHHGPGGFAGLTELFSLTKPVIAAVNGMAVGGGFELVLACDLIVAADHAQFFLPEAQIGIVPDSGGVFRLPKRLPRAVAMEMLLTGSRLSAEEALRWGLVNAVVAPDELIATALALAGRVAASAPLAQQAIMELVSAGESISVQQAFELQRSGSLPAYKRMLQSQDAEEGSNAFAEGRPPIWKGC
>NZ_CP012533.1|WP_068038549.1|3294220_3295003_-|SDR-family-oxidoreductase
MENIFRTDLFAGKTVLITGGGSGIGLAIARNFGTLGARVVIAARDQERLIEAGQSLREAGVDAIELAVNIRDSDSVAGLIEQLELQGIGIDVLVNNAGGQFAAPALELSANGFRSVVDLNLTGTFLMCQAFARHCMNRKLPGCIINIVLCQANGLPGMAHAGAAREGVVNLTRTLAWEWSNLGIRVNAVAPGTIKTEALDQYDPVALQDGINKLLIKRMGLPEEVAQSVAYLASPAASFITGTCLALDGGEHLTGASPQR
>NZ_CP012533.1|WP_068038545.1|3293613_3294204_-|carnitine-operon-protein-CaiE
MPCYEFEGLIPVVHPSAYVHPTAVLIGDVIVGPNVYIAPLASLRGDYGRLILEDGSNLQDNCVMHGYCDTDTVVEANGHIGHGAILHGCIVKRNALVGMNAVVMDGAIIGEDSIVAAGSFVKAGFKGAPRQLLVGSPAKVIREVSEQDLHWKGLNTKEYQALVWRSAASMNVVSPLLEMEADRPRLKGVTVVQPKV
>NZ_CP012533.1|WP_068038541.1|3292615_3293572_+|GlxA-family-transcriptional-regulator
MILNPDNDGAFTISFLLLPEYAMVALMSAIEPMRVANRLAGREIFRWQLLSEDGPPVAASNLLALQQTVAIRDAATPLNLFVCSSFNPKDYIRDDTVAWLRKLHRVGSLIGAIDTGCYLLAAAGLLKKHRIALHWEAAPSFQEDHPELELTNELFEVEHNLITCAGGTSAIDMMLYIIQTELGHALAIKVCEQFIKSGIRQKSDKQRIDLSARLKIYHPRLLRVLEKMEANLESPLSTKELAKYAHISVRQMERLFRSFLNDSPSGYYMKLRLERSRQLLKESSLSISEIRIICGFNSAPHFTRSYRKQFARSPSEDR
>NZ_CP012533.1|WP_068038533.1|3290368_3292213_+|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGAVAERNIANILLEGLKRLEYRGYDSAGLTVIRNGELHRERQVGKVLALVNAVADDPANFDGHIGIAHTRWATHGEPAQRNAHPHVSGKIAVVHNGIVENYAELKEDLIAKGYVFTSQTDTEVVAHLVNDIYQETSDLLEAVRAVIPLLHGAFALGIVHVDSPEELIAVRLGSPLVIGVGIGENFIASDQLALLPVTNRFMYLEEGDIANITRDRIRVYADGVEVSRKIHEIDAKQHNADKGEFKHYMLKEIYEQPDAVARTVEMAVDNGETTKLRDDFLQRHETKLAGIQHIQVLACGTSYHAGMVAKYWFENLTRLPCSVEIASEFRYRNPVVVDNSLVVCISQSGETADTLSALREIQKHSPTGLVSLALCNVPTSSLVRETDIFLPTLAGPEIGVASTKAFTTQLVALVLLLLKIGVVQNRIDNERLSSLLENLHKLPGQLHASLKLDAPIKIMSESFEEKKSCLFLGRGLQFPIALEGALKLKEISYIHAEGYAAGELKHGPLALVDKDMPIVVLAPKDSMFDKLKANMQEVHARHGELFVFASEASQMVAEDRLHVVYVPDVCEILAPIVYSVPVQLLSYHVAVMRGTDVDQPRNLAKSVTVE
>NZ_CP012533.1|WP_068038530.1|3288805_3290188_+|UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase
MTNSLSVIILAAGKGTRMQSAKPKVLQTLAGKPLLGHVLDTCDELTVAKTIVVYGFGGDQVQTAMDDKYAHLPITWVAQTEQLGTGHAVKVALEQLPKDGQSLILYGDVPLVSCQTLATLQAANTAGMSMLTLTVDNPFGLGRIKRDASGNIEAIVEQKDASTDEQSIQEINSGIYCVNNALLHKYLPELSNDNAQQEYYLTDIVKMAVADGVTIAAIEPEHTFEIEGVNNRQQLASLERTWQNKLVADLQEAGVQFADPTRVDIRGTLTAGQDVFVDVGVVFEGDCTLGDNVYIEAGCIIKNAQIGNACHLKPYCVIDRAEVGAGVDIGPFANLRPETVLSDNSKVGNFVEIKKSTIGHGSKINHLSYVGDATVGADVNVGAGVITCNYDGVNKSQTIIKDNAFIGSNASLVAPVTIGDTATIAAGSVITNDVDSNALGLGRARQVQKADFQRPTKKSK
>NZ_CP012533.1|WP_068038526.1|3288067_3288649_+|phosphatidylglycerophosphatase-A
MTDHDLSKPDISKANDCPPLPANASMLDRVVYWLGIGLGSGLPRRAPGTWGTVGGLIIAIPLLSLGFVPFLIITILSCIIGIWICGRTSELMQGHDDPHIVWDEWAGIWITLLPFSYMGLTAANFWQDISQGLSIMALIVAFVLFRFFDIIKPPPIGWADKKVAGGLGIMLDDIIAGIMAAVVWIFVMLGMLA
>NZ_CP012533.1|WP_082787297.1|3302018_3302777_+|tRNA-pseudouridine(65)-synthase-TruC
MDIESGTANQIEIIYEDEFLVAINKEAGLLVHRSWLDKGETRFALQLTRDAVGCHVFPVHRLDKPTSGVLLFAKSSAVARSLTEAFTEHKVTKQYLAVVRGFMPEQGTVDYELSFKPDAIADKFANLDKPAQEAVTHWRRLAQVELPFAVSKKHDTSRYSLMRLTPETGRKHQLRRHMRHLFHHIVGDTSHGDGRHNRFFRSQYGCTRMLLHAQSLALSHPVTGEPLLLKAELDEQWMNILKEFSWVESAEV
>NZ_CP012533.1|WP_149031865.1|3303233_3303602_+|hypothetical-protein
MLNKEIKMQVKIGLLLAAVLASGSSFAADSYKVSTSVFKDGELIASPVMLVNAEEMASIAVDTEFQYNLIVKPYNEHTAKVITALKVGDELTEQETTVAYDKEATVDNGKDKLTLLVRKIAS
>NZ_CP012533.1|WP_068038570.1|3303770_3304604_-|sulfite-exporter-TauE/SafE-family-protein
MELIIFLIIGALAGFAAGLFGVGGGTIIVPLLFIVFTQMGYSPDNIMHLALGTSLATIIVTSISSLMAHNKKGAVMWPVFKNLAPGLAIGCFFGAGIAGQISGLYLQLIVGVFLLWVAYKMFFGGKKQVDSQANDVNNANHTNIELPSKPKQLAAGGVIGVASAIFGIGGGSLTVPYLTRYGVVMQKAVGTSAACGLPIAIAGALGFMFFGMQQQVDVPNTIGFVHIYAFLGISIMSFFTAKLGAKVAHILSPEILKKCFSVLLTVVGFYFLYKGLV
>NZ_CP012533.1|WP_068038574.1|3304821_3305349_-|flavin-reductase
MIKDMIEANDFRDAMSLLTTAVNVVTTKGQSGLHGFTASAVCSVTDSPPTLLVCMNQAARSHAHFLENKTLSVNVLGAQHESISNAFASKLCSEERFEYGSWTQLATGAPVLEDALVSFDCEIEDVQEVGTHSIFMCRVVAIKHGYQYSDQQSGAGESLVYFNRAYHQVGQVEIV
>NZ_CP012533.1|WP_068038577.1|3305513_3306542_-|methionine-synthase
MELLLPTSTAGSLPKPSWLAEPEKIWSPWALEGEQLLEAKQDALRLTLQEQKHAGIDIVSDGEQTRQHFVTTFIEHLDGVDFENRKTVKIRDRYEASVPSVVGAVSRQKPVFVDDAKFLRQQTDQPIKWALPGPMTMIDTLYDGHYKSREKLAWEFAKILNQEARELEAAGVDIIQFDEPAFNVFFDDVNDWGIATLERAIEGLKCETAVHICYGYGIKANNDWKKTLGSEWRQYEQAFPKLQQSNIDIVSLECQNSHVPMDLIELIRGKKVMIGAIDVATNDIETPEQVADTLRKALQFVDADKLYPSTNCGMAPLSRQVAQGKLKALSAGAAIVRQELTA
>NZ_CP012533.1|WP_068038580.1|3306595_3307633_-|DUF1852-domain-containing-protein
MSKQFTYSISSIRFDENYQPADSTRLTTNFANLARGESRQENLRKTLTMINNRFNDLAHWDNPTADRYSVEVDIISADLDIEGNGHTFPVIETLKTTIIDHKENKRIDGMIGNSFSSYVRDYDFSILLPEHFEKNPKSPPAADFGDLHGKLFQHLLNSEAYKANFNKQPVICLSVSSSKVYQRNGNQHPVLGVEYKQDDYSLNNRSLTDAYFHKMGLTVRYFMPSGSVAPLAFYFAGDLLSDYTDLELISAISTMETFQKIYRPEIYNANSTAGHMYQPSLKYQDYSLTQIVYDREERSQMAVTQGKFTEDEFIKPYKAILDEWAANYVVTSETVQKEAVKKHAA
>NZ_CP012533.1|WP_068038583.1|3308534_3309629_+|hypothetical-protein
MKLKKIYNRIKFISRTPADISKIVRGQSYYPEKERKSSPTIFLDNLLWIIKNKEVNYFYNSNGLDIKNWRSPDEFLPDMKFRRERESGNSCKNEKFNYNYIAMLRDKYVFASYLSYVIGEDKVVPTIALYNNEEVYLLSEHTYISLEDFFQEDTKVFCKIINGEGSEEVFILEKKEGNYFLNSKKTTLSELKLKMKDSKYIFQDVIQQHESLNKINDSSVNTIRITTVRGASGKINILNSFLRLGSTKDSFVDNVKTGGLAVGIDDSGLLRKYGFYDVPFGTKVEQHPISNTVFEGYQLPYWDEVKDLVEKAHKQFYYVQSIGWDVAITPNGPILIEGNDNWGSIPSQIVEGGLKEKWYELKNA
>NZ_CP012533.1|WP_068038588.1|3309704_3310427_+|hypothetical-protein
MVNATISNISSKQPVNILWTGGWDSTFRMVQLAVSGAVIQPYYVIDTARISSLTEIRQMYIIKDDLSLKYKDCEIKDIKLIELSRIDIPDKYVKTHKRLLKDSYIGSQYIWLAALSEQIADLELSIHKDDTAEYFVRKLVNKEKGPESDEFAIFGRLKFPILDYTKPEMEEEAKTTGDLDILYKSWFCHKPINNTPCGICNPCKYTIAEGMANRFTIRGKIYNKAPRLFSLTRKVVHRLI
>NZ_CP012533.1|WP_068038591.1|3310570_3313681_-|efflux-RND-transporter-permease-subunit
MSMNVSTYSIKNPLVAILLFVLLTLGGLFGFQQMKVQQFPDIDLPAVVVTVTLPGAAPSQLENDVAKKIENRLTSIEGIKHIRTTLQTGAATIATEFVLEKDIQEAMDDVRSAVGEVRGDLPAAANDPIITKVSTAGFPVVTYSVTGNNMSVEDLSWFVDDTITKRLSDIQGVSAISRIGGLEREITVAADPIVLSGLQLSIPQLSQQIAGIQQDSAGGEAEVGNTTQTIRVLGAVERARALNDLQIAVPTGGTQALGRMAEVTDGAADPSSVAKLDGETVVAFNITRSRGASEVEVTKRVDAALAQLSAEMSNIEVEKVYDRATPVEEDYKSSLRMLIEGGILAVVVVFLFLRNIRATIVAAVALPLSVIPTFLGMYLFDFSLNIISLLALSLVIGVLVDDAIVEVENIIRHLRMGKTPYEAAMEAADEIGLAVIATTFTLIAVFLPTAFMGGVVGQFFRQFGWTAAMAIFASLLVARLITPMMAAYILRPEKQRVEKQSALMTWYLKIVSWTLHHRWLTMGATLLLFIGSLALVQLLPTSFIPDNDIDQTRVGIELTPDVELEDTERATALARERILALPEVTHVFSSVGQAQEAMGPNSSSGSGGAKNIASLDIVLAPRAERISKKEIEQQISAILTEVPSARFTVGLSSGGETGYSFSLTSTNPQVLEQTAQQIMTDIRALPIAGAVTSDRSLPQQELTVTPDRLAMADKGVTTQDIATTLRIATVGDYEQRLSKLNLDTRQIPIVVRLPDVAKQNVNQLEGLYVPSTCPAGQGVRVGEVADLDFGTGPARISRLDRERSITITVQPGAGELGDLVEAVKNTPTMQQLPASITMIAQGQAENMAELFSGFVIAMSVGIICILGVLILLFGKILQPFTILMALPLSIGGAFVGLVITGSSLSMPSMIGFIMLMGIATKNSILLVDYAIIAQNRGLARFEAIIDACRKRARPIIMTTIAMGAGMLPLVFGWGDADPTFRRPMAAAVLGGLVTSTLLSLVVIPVVYTLMDDLSGWFAKWLIPHGKDNDSPAVDKL
>NZ_CP012533.1|WP_068038593.1|3313677_3314961_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MSDLQDPNDKQVSNPTPEPELPPYRNPDMPKHKPSSKLPVWLLPVLVAVLVMGVLLGKYWDGNDSTTDESTVTIGTQSDIAPINADNDQAVLSVETVQPSQDSVGNTLTADGTISAKDIANVSAKVNGVAIERVLVEEGTRVKAGQVLAIFDTDAMQQQVLQAEADVAEAEATLANASADAARVLPLIDIDAISKQEADRYRTSRIRAEAALQASKARLSNQRLTLENAKVVAPVSGVISDKMAEVGMVAGGEPLFTIIKGGILEWRADIDPKLIGDVNVGTPVKVSLPRDQSVMGQVSRIAPTADNNRQITIYASLNANPAARAGMYQTGEFLLGSESMQTVPNSAIVSNDGYDYVMLVTDIKTQNDKTVGRIQQQRVTLGDRIGDNVVLAEPLPTDISLVKQGGSFLNDGDLVRVVESKAVQATS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012533_1	1.5\|2743955\|32\|NZ_CP012533\|CRISPRCasFinder,CRT,PILER-CR	2743955-2743986	32	NZ_AP018256	Calothrix sp. NIES-4071 plasmid plasmid1 DNA, complete genome	268633-268664	6	0.812
NZ_CP012533_1	1.7\|2744075\|32\|NZ_CP012533\|CRISPRCasFinder,CRT,PILER-CR	2744075-2744106	32	JQ287645	Sulfolobus virus STSV2, complete genome	30935-30966	9	0.719
NZ_CP012533_1	1.4\|2743895\|32\|NZ_CP012533\|CRISPRCasFinder,CRT,PILER-CR	2743895-2743926	32	MN655998	Escherichia phage E26, complete genome	35015-35046	10	0.688
NZ_CP012533_1	1.4\|2743895\|32\|NZ_CP012533\|CRISPRCasFinder,CRT,PILER-CR	2743895-2743926	32	MH560358	Escherichia virus KFS-EC, complete genome	143794-143825	10	0.688
NZ_CP012533_1	1.4\|2743895\|32\|NZ_CP012533\|CRISPRCasFinder,CRT,PILER-CR	2743895-2743926	32	MK573636	Escherichia phage vB_EcoM_PHB13, partial genome	35724-35755	10	0.688
NZ_CP012533_1	1.4\|2743895\|32\|NZ_CP012533\|CRISPRCasFinder,CRT,PILER-CR	2743895-2743926	32	MT764208	Escherichia phage JEP8, complete genome	115309-115340	10	0.688
NZ_CP012533_1	1.4\|2743895\|32\|NZ_CP012533\|CRISPRCasFinder,CRT,PILER-CR	2743895-2743926	32	MT478991	Escherichia phage vB_EcoM_011D4, complete genome	150189-150220	10	0.688
NZ_CP012533_1	1.4\|2743895\|32\|NZ_CP012533\|CRISPRCasFinder,CRT,PILER-CR	2743895-2743926	32	NC_009821	Enterobacteria phage Phi1, complete genome	34735-34766	10	0.688
NZ_CP012533_1	1.4\|2743895\|32\|NZ_CP012533\|CRISPRCasFinder,CRT,PILER-CR	2743895-2743926	32	MF327006	Shigella phage Sf20, complete genome	135144-135175	10	0.688
NZ_CP012533_1	1.4\|2743895\|32\|NZ_CP012533\|CRISPRCasFinder,CRT,PILER-CR	2743895-2743926	32	MK327932	Escherichia phage vB_EcoM_G2248, complete genome	35315-35346	10	0.688
NZ_CP012533_1	1.4\|2743895\|32\|NZ_CP012533\|CRISPRCasFinder,CRT,PILER-CR	2743895-2743926	32	NC_025425	Enterobacteria phage GEC-3S complete genome	34751-34782	10	0.688
NZ_CP012533_1	1.4\|2743895\|32\|NZ_CP012533\|CRISPRCasFinder,CRT,PILER-CR	2743895-2743926	32	MN709127	Escherichia virus Ec_Makalu_002, complete genome	34794-34825	10	0.688
NZ_CP012533_1	1.4\|2743895\|32\|NZ_CP012533\|CRISPRCasFinder,CRT,PILER-CR	2743895-2743926	32	NC_041936	Escherichia phage ECD7, complete genome	36459-36490	10	0.688
NZ_CP012533_1	1.4\|2743895\|32\|NZ_CP012533\|CRISPRCasFinder,CRT,PILER-CR	2743895-2743926	32	AY343333	Enterobacteria phage RB49, complete genome	35113-35144	10	0.688
NZ_CP012533_1	1.4\|2743895\|32\|NZ_CP012533\|CRISPRCasFinder,CRT,PILER-CR	2743895-2743926	32	MK962753	Shigella phage JK32, complete genome	37001-37032	10	0.688
NZ_CP012533_1	1.4\|2743895\|32\|NZ_CP012533\|CRISPRCasFinder,CRT,PILER-CR	2743895-2743926	32	NC_012740	Enterobacteria phage JSE, complete genome	36303-36334	10	0.688
NZ_CP012533_1	1.4\|2743895\|32\|NZ_CP012533\|CRISPRCasFinder,CRT,PILER-CR	2743895-2743926	32	MN850574	Escherichia phage kaaroe, complete genome	71859-71890	10	0.688
NZ_CP012533_1	1.4\|2743895\|32\|NZ_CP012533\|CRISPRCasFinder,CRT,PILER-CR	2743895-2743926	32	MN850615	Escherichia phage kvi, complete genome	137785-137816	10	0.688
NZ_CP012533_1	1.4\|2743895\|32\|NZ_CP012533\|CRISPRCasFinder,CRT,PILER-CR	2743895-2743926	32	MN894885	Escherichia virus Ec_Makalu_001, complete genome	34806-34837	10	0.688
NZ_CP012533_1	1.4\|2743895\|32\|NZ_CP012533\|CRISPRCasFinder,CRT,PILER-CR	2743895-2743926	32	MN882349	Escherichia virus Ec_Makalu_003, complete genome	34790-34821	10	0.688
NZ_CP012533_1	1.5\|2743955\|32\|NZ_CP012533\|CRISPRCasFinder,CRT,PILER-CR	2743955-2743986	32	MK047640	Phage NV18, complete genome	8634-8665	11	0.656

1. spacer 1.5|2743955|32|NZ_CP012533|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018256 (Calothrix sp. NIES-4071 plasmid plasmid1 DNA, complete genome) position: , mismatch: 6, identity: 0.812

ataaagtattaacgaatggctatgcccatcac--	CRISPR spacer
ataaagtattaatgaattgctat--ccataatta	Protospacer
************.**** *****  **** *.

2. spacer 1.7|2744075|32|NZ_CP012533|CRISPRCasFinder,CRT,PILER-CR matches to JQ287645 (Sulfolobus virus STSV2, complete genome) position: , mismatch: 9, identity: 0.719

atcaagaaatatccaatttaacacctgaacag	CRISPR spacer
tacaagaaataggcaatttaacaccacaagta	Protospacer
  *********  ************  **  .

3. spacer 1.4|2743895|32|NZ_CP012533|CRISPRCasFinder,CRT,PILER-CR matches to MN655998 (Escherichia phage E26, complete genome) position: , mismatch: 10, identity: 0.688

aaccgaatcaaacggattaaaaccagctaatg	CRISPR spacer
ttccgaatcaaacggatgaacaccaaacagga	Protospacer
  *************** ** ****. .*. .

4. spacer 1.4|2743895|32|NZ_CP012533|CRISPRCasFinder,CRT,PILER-CR matches to MH560358 (Escherichia virus KFS-EC, complete genome) position: , mismatch: 10, identity: 0.688

aaccgaatcaaacggattaaaaccagctaatg	CRISPR spacer
ttccgaatcaaacggatgaacaccaaacagga	Protospacer
  *************** ** ****. .*. .

5. spacer 1.4|2743895|32|NZ_CP012533|CRISPRCasFinder,CRT,PILER-CR matches to MK573636 (Escherichia phage vB_EcoM_PHB13, partial genome) position: , mismatch: 10, identity: 0.688

aaccgaatcaaacggattaaaaccagctaatg	CRISPR spacer
ttccgaatcaaacggatgaacaccaaacagga	Protospacer
  *************** ** ****. .*. .

6. spacer 1.4|2743895|32|NZ_CP012533|CRISPRCasFinder,CRT,PILER-CR matches to MT764208 (Escherichia phage JEP8, complete genome) position: , mismatch: 10, identity: 0.688

aaccgaatcaaacggattaaaaccagctaatg	CRISPR spacer
ttccgaatcaaacggatgaacaccaaacagga	Protospacer
  *************** ** ****. .*. .

7. spacer 1.4|2743895|32|NZ_CP012533|CRISPRCasFinder,CRT,PILER-CR matches to MT478991 (Escherichia phage vB_EcoM_011D4, complete genome) position: , mismatch: 10, identity: 0.688

aaccgaatcaaacggattaaaaccagctaatg	CRISPR spacer
ttccgaatcaaacggatgaacaccaaacagga	Protospacer
  *************** ** ****. .*. .

8. spacer 1.4|2743895|32|NZ_CP012533|CRISPRCasFinder,CRT,PILER-CR matches to NC_009821 (Enterobacteria phage Phi1, complete genome) position: , mismatch: 10, identity: 0.688

aaccgaatcaaacggattaaaaccagctaatg	CRISPR spacer
ttccgaatcaaacggatgaacaccaaacagga	Protospacer
  *************** ** ****. .*. .

9. spacer 1.4|2743895|32|NZ_CP012533|CRISPRCasFinder,CRT,PILER-CR matches to MF327006 (Shigella phage Sf20, complete genome) position: , mismatch: 10, identity: 0.688

aaccgaatcaaacggattaaaaccagctaatg	CRISPR spacer
ttccgaatcaaacggatgaacaccaaacagga	Protospacer
  *************** ** ****. .*. .

10. spacer 1.4|2743895|32|NZ_CP012533|CRISPRCasFinder,CRT,PILER-CR matches to MK327932 (Escherichia phage vB_EcoM_G2248, complete genome) position: , mismatch: 10, identity: 0.688

aaccgaatcaaacggattaaaaccagctaatg	CRISPR spacer
ttccgaatcaaacggatgaacaccaaacagga	Protospacer
  *************** ** ****. .*. .

11. spacer 1.4|2743895|32|NZ_CP012533|CRISPRCasFinder,CRT,PILER-CR matches to NC_025425 (Enterobacteria phage GEC-3S complete genome) position: , mismatch: 10, identity: 0.688

aaccgaatcaaacggattaaaaccagctaatg	CRISPR spacer
ttccgaatcaaacggatgaacaccaaacagga	Protospacer
  *************** ** ****. .*. .

12. spacer 1.4|2743895|32|NZ_CP012533|CRISPRCasFinder,CRT,PILER-CR matches to MN709127 (Escherichia virus Ec_Makalu_002, complete genome) position: , mismatch: 10, identity: 0.688

aaccgaatcaaacggattaaaaccagctaatg	CRISPR spacer
ttccgaatcaaacggatgaacaccaaacagga	Protospacer
  *************** ** ****. .*. .

13. spacer 1.4|2743895|32|NZ_CP012533|CRISPRCasFinder,CRT,PILER-CR matches to NC_041936 (Escherichia phage ECD7, complete genome) position: , mismatch: 10, identity: 0.688

aaccgaatcaaacggattaaaaccagctaatg	CRISPR spacer
ttccgaatcaaacggatgaacaccaaacagga	Protospacer
  *************** ** ****. .*. .

14. spacer 1.4|2743895|32|NZ_CP012533|CRISPRCasFinder,CRT,PILER-CR matches to AY343333 (Enterobacteria phage RB49, complete genome) position: , mismatch: 10, identity: 0.688

aaccgaatcaaacggattaaaaccagctaatg	CRISPR spacer
ttccgaatcaaacggatgaacaccaaacagga	Protospacer
  *************** ** ****. .*. .

15. spacer 1.4|2743895|32|NZ_CP012533|CRISPRCasFinder,CRT,PILER-CR matches to MK962753 (Shigella phage JK32, complete genome) position: , mismatch: 10, identity: 0.688

aaccgaatcaaacggattaaaaccagctaatg	CRISPR spacer
ttccgaatcaaacggatgaacaccaaacagga	Protospacer
  *************** ** ****. .*. .

16. spacer 1.4|2743895|32|NZ_CP012533|CRISPRCasFinder,CRT,PILER-CR matches to NC_012740 (Enterobacteria phage JSE, complete genome) position: , mismatch: 10, identity: 0.688

aaccgaatcaaacggattaaaaccagctaatg	CRISPR spacer
ttccgaatcaaacggatgaacaccaaacagga	Protospacer
  *************** ** ****. .*. .

17. spacer 1.4|2743895|32|NZ_CP012533|CRISPRCasFinder,CRT,PILER-CR matches to MN850574 (Escherichia phage kaaroe, complete genome) position: , mismatch: 10, identity: 0.688

aaccgaatcaaacggattaaaaccagctaatg	CRISPR spacer
ttccgaatcaaacggatgaacaccaaacagga	Protospacer
  *************** ** ****. .*. .

18. spacer 1.4|2743895|32|NZ_CP012533|CRISPRCasFinder,CRT,PILER-CR matches to MN850615 (Escherichia phage kvi, complete genome) position: , mismatch: 10, identity: 0.688

aaccgaatcaaacggattaaaaccagctaatg	CRISPR spacer
ttccgaatcaaacggatgaacaccaaacagga	Protospacer
  *************** ** ****. .*. .

19. spacer 1.4|2743895|32|NZ_CP012533|CRISPRCasFinder,CRT,PILER-CR matches to MN894885 (Escherichia virus Ec_Makalu_001, complete genome) position: , mismatch: 10, identity: 0.688

aaccgaatcaaacggattaaaaccagctaatg	CRISPR spacer
ttccgaatcaaacggatgaacaccaaacagga	Protospacer
  *************** ** ****. .*. .

20. spacer 1.4|2743895|32|NZ_CP012533|CRISPRCasFinder,CRT,PILER-CR matches to MN882349 (Escherichia virus Ec_Makalu_003, complete genome) position: , mismatch: 10, identity: 0.688

aaccgaatcaaacggattaaaaccagctaatg	CRISPR spacer
ttccgaatcaaacggatgaacaccaaacagga	Protospacer
  *************** ** ****. .*. .

21. spacer 1.5|2743955|32|NZ_CP012533|CRISPRCasFinder,CRT,PILER-CR matches to MK047640 (Phage NV18, complete genome) position: , mismatch: 11, identity: 0.656

ataaagtattaacgaatggctatgcccatcac	CRISPR spacer
tacgcatattaacgaatgactacgcccatgca	Protospacer
   . .************.***.******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1258928 : 1339191

Acinetobacter_phage(16.67%)

transposase,integrase

attL 1247298:1247313|attR 1321477:1321492

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1247298:1247313	attL	NA	NA	NA	NA
WP_068035158.1\|1258928_1262378_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_068035160.1\|1262384_1264760_-	hypothetical protein	NA	NA	NA	NA
WP_068035163.1\|1265418_1266279_-	hypothetical protein	NA	NA	NA	NA
WP_068035167.1\|1266458_1268312_-	hypothetical protein	NA	NA	NA	NA
WP_068035168.1\|1268311_1269520_-	AAA family ATPase	M1PME2	Moumouvirus	7.7e-05	23.4
WP_068035169.1\|1269528_1271934_-	Hsp70 family protein	A0A0G2YCR2	Acanthamoeba_polyphaga_mimivirus	8.1e-14	25.6
WP_068035170.1\|1272474_1278186_-	AAA family ATPase	A0A172Q0D8	Acinetobacter_phage	3.5e-15	35.8
WP_068035182.1\|1278586_1279456_+	hypothetical protein	A0A0R6PHP9	Moraxella_phage	1.1e-45	38.4
WP_068035184.1\|1279508_1282001_+	hypothetical protein	NA	NA	NA	NA
WP_068035185.1\|1282026_1283340_+	ATP-binding protein	NA	NA	NA	NA
WP_068035187.1\|1283379_1285725_+	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_068035188.1\|1285783_1286107_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA
WP_149038738.1\|1286170_1287729_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_068035190.1\|1287796_1289491_+	DUF2075 domain-containing protein	NA	NA	NA	NA
WP_068035192.1\|1289552_1291931_+	AAA domain-containing protein	K4I1H4	Acidithiobacillus_phage	5.4e-26	39.0
WP_068035194.1\|1291927_1293205_+	McrC family protein	NA	NA	NA	NA
WP_068035195.1\|1293518_1294580_+	HNH endonuclease	A0A2H4IZY3	uncultured_Caudovirales_phage	1.6e-14	39.0
WP_068035197.1\|1294612_1295014_+	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA
WP_068035198.1\|1295010_1297848_+	DEAD/DEAH box helicase	Q5YA94	Bacillus_phage	9.5e-30	26.3
WP_149038750.1\|1297971_1298643_+	hypothetical protein	NA	NA	NA	NA
WP_068035203.1\|1300188_1300845_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_068035207.1\|1301229_1301598_+	hypothetical protein	NA	NA	NA	NA
WP_082787179.1\|1301623_1302355_+	lecithin retinol acyltransferase family protein	NA	NA	NA	NA
WP_068035211.1\|1302463_1303372_+	radical SAM protein	NA	NA	NA	NA
WP_149038751.1\|1303915_1304161_+	hypothetical protein	NA	NA	NA	NA
WP_149038742.1\|1304585_1305804_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.8e-81	51.3
WP_068035223.1\|1306311_1307442_+	radical SAM protein	NA	NA	NA	NA
WP_068035224.1\|1307438_1308044_+	hypothetical protein	NA	NA	NA	NA
WP_068035225.1\|1308036_1308456_+	hypothetical protein	NA	NA	NA	NA
WP_149038738.1\|1308441_1310000_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_068035226.1\|1310172_1310475_+	hypothetical protein	NA	NA	NA	NA
WP_068035227.1\|1311026_1311344_-	hypothetical protein	NA	NA	NA	NA
WP_068035229.1\|1311354_1311639_-	hypothetical protein	NA	NA	NA	NA
WP_068035231.1\|1311635_1312859_-\|integrase	site-specific integrase	A0A286S1S8	Klebsiella_phage	1.7e-31	28.8
WP_045456309.1\|1312885_1313101_-	hypothetical protein	NA	NA	NA	NA
WP_068035233.1\|1313223_1313460_+	helix-turn-helix transcriptional regulator	A0A0E3U244	Fusobacterium_phage	9.4e-08	38.2
WP_068035234.1\|1314277_1315948_+	alpha-keto acid decarboxylase family protein	E4WLQ6	Ostreococcus_tauri_virus	1.3e-15	23.3
WP_068035237.1\|1316120_1316525_+	RidA family protein	NA	NA	NA	NA
WP_068039075.1\|1316658_1317426_-	DUF5020 family protein	NA	NA	NA	NA
WP_068035238.1\|1318064_1318853_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_068035241.1\|1318887_1320276_+	hypothetical protein	NA	NA	NA	NA
WP_082787180.1\|1320400_1321480_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_068035243.1\|1321613_1322693_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA
1321477:1321492	attR	NA	NA	NA	NA
WP_149038787.1\|1322840_1323869_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_068035248.1\|1324216_1325137_+	hypothetical protein	NA	NA	NA	NA
WP_068035249.1\|1325163_1325943_+	class II aldolase/adducin family protein	NA	NA	NA	NA
WP_068035250.1\|1325979_1327152_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_068039081.1\|1327224_1327953_+	protocatechuate 3,4-dioxygenase subunit beta	NA	NA	NA	NA
WP_068035252.1\|1327956_1328580_+	protocatechuate 3,4-dioxygenase subunit alpha	NA	NA	NA	NA
WP_068035254.1\|1328647_1329871_+	4-hydroxybenzoate 3-monooxygenase	NA	NA	NA	NA
WP_068035257.1\|1330097_1330634_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_068035259.1\|1330693_1332040_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_068035261.1\|1332109_1332763_+	5-oxoprolinase subunit PxpB	NA	NA	NA	NA
WP_068035264.1\|1332812_1333733_+	biotin-dependent carboxyltransferase family protein	NA	NA	NA	NA
WP_068035266.1\|1333722_1334457_+	5-oxoprolinase subunit PxpA	NA	NA	NA	NA
WP_068035268.1\|1334510_1335698_+	divalent metal cation transporter	NA	NA	NA	NA
WP_068035270.1\|1335708_1336137_+	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA
WP_068039085.1\|1336443_1337196_+	class II aldolase/adducin family protein	NA	NA	NA	NA
WP_082787182.1\|1337202_1337964_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_149038736.1\|1338026_1339191_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.2e-102	62.3

DBSCAN-SWA_2

2690314 : 2743383

uncultured_virus(40.0%)

protease,transposase,integrase

attL 2687058:2687077|attR 2730159:2730178

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2687058:2687077	attL	NA	NA	NA	NA
WP_109592591.1\|2690314_2691013_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_068037304.1\|2692615_2693050_+	hypothetical protein	NA	NA	NA	NA
WP_157822716.1\|2693154_2693982_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_068037308.1\|2694296_2695229_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_068037311.1\|2695455_2696538_+	YeiH family putative sulfate export transporter	NA	NA	NA	NA
WP_068037314.1\|2696593_2697475_-\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_068037317.1\|2697621_2698239_+	DUF411 domain-containing protein	NA	NA	NA	NA
WP_062844964.1\|2699281_2700562_-	c-type cytochrome biogenesis protein CcmI	NA	NA	NA	NA
WP_062844965.1\|2700558_2701122_-	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
WP_058025866.1\|2701118_2701769_-	DsbE family thiol:disulfide interchange protein	NA	NA	NA	NA
WP_068037320.1\|2701761_2703816_-	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_068037323.1\|2704060_2705350_-	hypothetical protein	NA	NA	NA	NA
WP_068037325.1\|2705433_2706303_-	twin-arginine translocase subunit TatC	NA	NA	NA	NA
WP_036599454.1\|2706299_2706686_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_011959992.1\|2706741_2707026_-	Sec-independent protein translocase subunit TatA	NA	NA	NA	NA
WP_068037328.1\|2707106_2709725_-	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	9.3e-88	36.2
WP_157769651.1\|2709840_2710017_-	hypothetical protein	NA	NA	NA	NA
WP_068037331.1\|2710395_2710668_-	hypothetical protein	NA	NA	NA	NA
WP_068037334.1\|2710780_2711434_-	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_102076291.1\|2711563_2712913_-	APC family permease	NA	NA	NA	NA
WP_068037340.1\|2713052_2713529_-	DUF305 domain-containing protein	A0A0G2Y9T4	Acanthamoeba_polyphaga_mimivirus	6.5e-08	31.5
WP_068037343.1\|2713624_2714809_-	copper resistance protein	NA	NA	NA	NA
WP_068037346.1\|2714840_2716538_-	copper resistance system multicopper oxidase	NA	NA	NA	NA
WP_068037351.1\|2716605_2717244_-	ATP-binding protein	NA	NA	NA	NA
WP_068037353.1\|2717413_2718004_-	cytochrome c	NA	NA	NA	NA
WP_068037357.1\|2718065_2718338_-	hypothetical protein	NA	NA	NA	NA
WP_011959984.1\|2718471_2718798_-	hypothetical protein	NA	NA	NA	NA
WP_068037359.1\|2719123_2719870_+	heavy metal response regulator transcription factor	NA	NA	NA	NA
WP_068037363.1\|2719859_2721338_+	sensor histidine kinase	NA	NA	NA	NA
WP_011959981.1\|2721521_2722406_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_068037366.1\|2722588_2723458_+\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_158511270.1\|2723580_2726907_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_068037372.1\|2726897_2729261_-	hypothetical protein	NA	NA	NA	NA
WP_068037374.1\|2729247_2729772_-	hypothetical protein	NA	NA	NA	NA
WP_068037376.1\|2730722_2731247_-	TIGR00645 family protein	K4K6D8	Caulobacter_phage	1.1e-16	29.4
2730159:2730178	attR	NA	NA	NA	NA
WP_068037378.1\|2731508_2732480_+	calcium/sodium antiporter	NA	NA	NA	NA
WP_011959554.1\|2732688_2733390_-\|transposase	IS1-like element ISPssp2 family transposase	A0A218MNG1	uncultured_virus	2.0e-37	54.3
WP_011959978.1\|2733468_2734299_+	cation transporter	NA	NA	NA	NA
WP_011959977.1\|2734660_2735362_-	VIT family protein	NA	NA	NA	NA
WP_011959976.1\|2735443_2736127_-	hypothetical protein	NA	NA	NA	NA
WP_011959975.1\|2736190_2737273_-	FAD:protein FMN transferase	NA	NA	NA	NA
WP_020444569.1\|2737328_2737643_-	hypothetical protein	NA	NA	NA	NA
WP_011959973.1\|2737635_2738226_-	hypothetical protein	NA	NA	NA	NA
WP_011959972.1\|2738325_2739789_-	histidine kinase	NA	NA	NA	NA
WP_020444568.1\|2739853_2740528_-	response regulator	NA	NA	NA	NA
WP_082787241.1\|2740547_2741153_-	cytochrome B	NA	NA	NA	NA
WP_020444588.1\|2741473_2742733_+	ferredoxin reductase family protein	NA	NA	NA	NA
WP_011959968.1\|2743116_2743383_-\|protease	Serine protease inhibitor-like protein	Q9DHG4	Yaba-like_disease_virus	1.2e-06	36.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP012533

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection