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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP014791 Staphylococcus aureus strain MCRF184 chromosome, complete genome 8 crisprs cas3,DEDDh,DinG,csa3,WYL 4 3 8 0

Results visualization

1. NZ_CP014791
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014791_1 216561-216671 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014791_2 671971-672064 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014791_3 770760-770843 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014791_4 1768216-1768304 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014791_5 1821494-1821627 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014791_6 1828730-1828857 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014791_7 2153828-2153966 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014791_8 2344111-2344204 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP014791_3 3.1|770785|34|NZ_CP014791|CRISPRCasFinder 770785-770818 34 NZ_CP014791.1 1003039-1003072 0 1.0
NZ_CP014791_1 1.1|216591|51|NZ_CP014791|CRISPRCasFinder 216591-216641 51 NZ_CP014791.1 216455-216505 1 0.98
NZ_CP014791_4 4.1|1768246|29|NZ_CP014791|CRISPRCasFinder 1768246-1768274 29 NZ_CP014791.1 884022-884050 2 0.931
NZ_CP014791_7 7.1|2153879|37|NZ_CP014791|CRISPRCasFinder 2153879-2153915 37 NZ_CP014791.1 2153790-2153826 2 0.946

1. spacer 3.1|770785|34|NZ_CP014791|CRISPRCasFinder matches to position: 1003039-1003072, mismatch: 0, identity: 1.0

ttgttggggcccacaccccaacttgcacattatc	CRISPR spacer
ttgttggggcccacaccccaacttgcacattatc	Protospacer
**********************************

2. spacer 1.1|216591|51|NZ_CP014791|CRISPRCasFinder matches to position: 216455-216505, mismatch: 1, identity: 0.98

caaaagaagccaagcaaaacaaatgcatataacgtaacaacacatgcaaac	CRISPR spacer
caaaacaagccaagcaaaacaaatgcatataacgtaacaacacatgcaaac	Protospacer
***** *********************************************

3. spacer 4.1|1768246|29|NZ_CP014791|CRISPRCasFinder matches to position: 884022-884050, mismatch: 2, identity: 0.931

cagagaatttcaacaagaaattctacaag	CRISPR spacer
cagagaatttcgaaaagaaattctacaag	Protospacer
***********.* ***************

4. spacer 7.1|2153879|37|NZ_CP014791|CRISPRCasFinder matches to position: 2153790-2153826, mismatch: 2, identity: 0.946

agctcacaaaacccttgatatcattggtttcccatga	CRISPR spacer
agctcacaaaacccttgatatcactggtttctcatga	Protospacer
***********************.*******.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP014791_4 4.1|1768246|29|NZ_CP014791|CRISPRCasFinder 1768246-1768274 29 NZ_LR134403 Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence 202405-202433 5 0.828
NZ_CP014791_4 4.1|1768246|29|NZ_CP014791|CRISPRCasFinder 1768246-1768274 29 NC_021539 Listeria phage LP-030-2, complete genome 30990-31018 5 0.828
NZ_CP014791_4 4.1|1768246|29|NZ_CP014791|CRISPRCasFinder 1768246-1768274 29 KJ094023 Listeria phage LP-101, complete genome 36648-36676 5 0.828
NZ_CP014791_4 4.1|1768246|29|NZ_CP014791|CRISPRCasFinder 1768246-1768274 29 MN693250 Marine virus AFVG_25M507, complete genome 24474-24502 6 0.793
NZ_CP014791_4 4.1|1768246|29|NZ_CP014791|CRISPRCasFinder 1768246-1768274 29 MN693116 Marine virus AFVG_25M217, complete genome 37740-37768 6 0.793
NZ_CP014791_4 4.1|1768246|29|NZ_CP014791|CRISPRCasFinder 1768246-1768274 29 NZ_CP039965 Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence 1307898-1307926 7 0.759
NZ_CP014791_4 4.1|1768246|29|NZ_CP014791|CRISPRCasFinder 1768246-1768274 29 MH791411 UNVERIFIED: Escherichia phage Ecwhy_1, complete genome 54760-54788 7 0.759
NZ_CP014791_4 4.1|1768246|29|NZ_CP014791|CRISPRCasFinder 1768246-1768274 29 MT446416 UNVERIFIED: Escherichia virus TH47, complete genome 202998-203026 7 0.759
NZ_CP014791_4 4.1|1768246|29|NZ_CP014791|CRISPRCasFinder 1768246-1768274 29 MH494197 Escherichia phage CMSTMSU, complete genome 237333-237361 7 0.759
NZ_CP014791_5 5.2|1821572|33|NZ_CP014791|CRISPRCasFinder 1821572-1821604 33 KM983333 Clostridium phage phiCTC2A, complete genome 10857-10889 9 0.727
NZ_CP014791_5 5.2|1821572|33|NZ_CP014791|CRISPRCasFinder 1821572-1821604 33 KM983330 Clostridium phage phiCT19406A, complete genome 10857-10889 9 0.727
NZ_CP014791_5 5.2|1821572|33|NZ_CP014791|CRISPRCasFinder 1821572-1821604 33 KM983329 Clostridium phage phiCT9441A, complete genome 11318-11350 9 0.727
NZ_CP014791_5 5.2|1821572|33|NZ_CP014791|CRISPRCasFinder 1821572-1821604 33 NZ_CP032676 Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence 171591-171623 9 0.727
NZ_CP014791_5 5.1|1821517|32|NZ_CP014791|CRISPRCasFinder 1821517-1821548 32 NZ_AP018257 Calothrix sp. NIES-4071 plasmid plasmid2 DNA, complete genome 239932-239963 10 0.688
NZ_CP014791_5 5.1|1821517|32|NZ_CP014791|CRISPRCasFinder 1821517-1821548 32 NZ_AP019369 Silvanigrellales bacterium RF1110005 plasmid 79K, complete sequence 62249-62280 11 0.656

1. spacer 4.1|1768246|29|NZ_CP014791|CRISPRCasFinder matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 5, identity: 0.828

cagagaatttcaacaagaaattctacaag	CRISPR spacer
tagagaatatcaacaagaaattataaatg	Protospacer
.******* ************* ** * *

2. spacer 4.1|1768246|29|NZ_CP014791|CRISPRCasFinder matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 5, identity: 0.828

cagagaatttcaacaagaaattctacaag	CRISPR spacer
tagagaatatcaacaagaaattataaatg	Protospacer
.******* ************* ** * *

3. spacer 4.1|1768246|29|NZ_CP014791|CRISPRCasFinder matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 5, identity: 0.828

cagagaatttcaacaagaaattctacaag	CRISPR spacer
tagagaatatcaacaagaaattataaatg	Protospacer
.******* ************* ** * *

4. spacer 4.1|1768246|29|NZ_CP014791|CRISPRCasFinder matches to MN693250 (Marine virus AFVG_25M507, complete genome) position: , mismatch: 6, identity: 0.793

cagagaatttcaacaagaaattctacaag	CRISPR spacer
aagagaattgcaacaagaaattctaatgc	Protospacer
 ******** ***************  . 

5. spacer 4.1|1768246|29|NZ_CP014791|CRISPRCasFinder matches to MN693116 (Marine virus AFVG_25M217, complete genome) position: , mismatch: 6, identity: 0.793

cagagaatttcaacaagaaattctacaag	CRISPR spacer
agcaaaatttcaacaagagattctacaaa	Protospacer
 . *.*************.*********.

6. spacer 4.1|1768246|29|NZ_CP014791|CRISPRCasFinder matches to NZ_CP039965 (Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

cagagaatttcaacaagaaattctacaag	CRISPR spacer
atgagaatttcaccaagaaattcggcatc	Protospacer
  ********** ********** .**  

7. spacer 4.1|1768246|29|NZ_CP014791|CRISPRCasFinder matches to MH791411 (UNVERIFIED: Escherichia phage Ecwhy_1, complete genome) position: , mismatch: 7, identity: 0.759

cagagaatttcaacaagaaattctacaag	CRISPR spacer
tgtaaaatttcatcaaggaattctacaac	Protospacer
.. *.******* ****.********** 

8. spacer 4.1|1768246|29|NZ_CP014791|CRISPRCasFinder matches to MT446416 (UNVERIFIED: Escherichia virus TH47, complete genome) position: , mismatch: 7, identity: 0.759

cagagaatttcaacaagaaattctacaag	CRISPR spacer
tgtaaaatttcatcaaggaattctacaac	Protospacer
.. *.******* ****.********** 

9. spacer 4.1|1768246|29|NZ_CP014791|CRISPRCasFinder matches to MH494197 (Escherichia phage CMSTMSU, complete genome) position: , mismatch: 7, identity: 0.759

cagagaatttcaacaagaaattctacaag	CRISPR spacer
tgtaaaatttcatcaaggaattctacaac	Protospacer
.. *.******* ****.********** 

10. spacer 5.2|1821572|33|NZ_CP014791|CRISPRCasFinder matches to KM983333 (Clostridium phage phiCTC2A, complete genome) position: , mismatch: 9, identity: 0.727

cagaaactggcggaaagtcagctttcaataacg	CRISPR spacer
gatgaactggctgaaagacagctttcaattgga	Protospacer
 * .******* ***** *********** . .

11. spacer 5.2|1821572|33|NZ_CP014791|CRISPRCasFinder matches to KM983330 (Clostridium phage phiCT19406A, complete genome) position: , mismatch: 9, identity: 0.727

cagaaactggcggaaagtcagctttcaataacg	CRISPR spacer
gatgaactggctgaaagacagctttcaattgga	Protospacer
 * .******* ***** *********** . .

12. spacer 5.2|1821572|33|NZ_CP014791|CRISPRCasFinder matches to KM983329 (Clostridium phage phiCT9441A, complete genome) position: , mismatch: 9, identity: 0.727

cagaaactggcggaaagtcagctttcaataacg	CRISPR spacer
gatgaactggctgaaagacagctttcaattgga	Protospacer
 * .******* ***** *********** . .

13. spacer 5.2|1821572|33|NZ_CP014791|CRISPRCasFinder matches to NZ_CP032676 (Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence) position: , mismatch: 9, identity: 0.727

cagaaactggcggaaagtcagctttcaataacg	CRISPR spacer
cagaaactggcggaaaggcggcttccgacgcgt	Protospacer
***************** *.****.*.*..   

14. spacer 5.1|1821517|32|NZ_CP014791|CRISPRCasFinder matches to NZ_AP018257 (Calothrix sp. NIES-4071 plasmid plasmid2 DNA, complete genome) position: , mismatch: 10, identity: 0.688

agtaaatttggatcctcaatttctacagacga	CRISPR spacer
cgtaaatttgcatccgcaatttctttctcagc	Protospacer
 ********* **** ******** .    * 

15. spacer 5.1|1821517|32|NZ_CP014791|CRISPRCasFinder matches to NZ_AP019369 (Silvanigrellales bacterium RF1110005 plasmid 79K, complete sequence) position: , mismatch: 11, identity: 0.656

agtaaatttggatcctcaatttctacagacga	CRISPR spacer
ttgaaatttgtatcatcaatttctacttcaat	Protospacer
   ******* *** ***********    . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 703032 : 710851 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 722827 : 737103 13 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 978377 : 986850 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_4 1242208 : 1256665 23 Staphylococcus_phage(57.14%) integrase,portal,terminase,capsid attL 1236031:1236048|attR 1259504:1259521
DBSCAN-SWA_5 1529697 : 1538009 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_6 1607324 : 1616368 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_7 1739512 : 1785009 43 Staphylococcus_phage(94.29%) tRNA,protease NA
DBSCAN-SWA_8 1876861 : 1973658 101 Staphylococcus_phage(70.0%) integrase,head,tail,holin,capsid,portal,protease,tRNA attL 1936249:1936266|attR 1943074:1943091
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage