CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP014784	Pseudomonas alcaligenes strain NEB 585 chromosome, complete genome	4 crisprs	csa3,DEDDh,DinG,cas3,WYL	0	3	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014784_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014784_3

37610-37680

Orphan

Consensus_repeat	Method
TCAATCTGCGCGGTGGTCATGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014784_3

>merge|NZ_CP014784|3|37610-37680|CRISPRCasFinder
GCGGCCTGGGCCGTGGTCAGGGCTACCAGTTGGTCCGTGGTCAGCGCACCGACTTGCGCGCTGGTCAGGCC

>NZ_CP014784|3|3|37610-37680|CRISPRCasFinder
GCGGCCTGGGCCGTGGTCAGGGC	TACCAGTTGGTCCGTGGTCAGCGCA
CCGACTTGCGCGCTGGTCAGGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014784.1\|WP_061902558.1\|44316_45531_-\|sterol-desaturase-family-protein	unknown	unknown	gnl\|CDD\|377224
NZ_CP014784.1\|WP_061902548.1\|17924_19244_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP014784.1\|WP_061902556.1\|42476_43115_-\|imidazole-glycerol-phosphate-synthase-subunit-HisH	unknown	unknown	gnl\|CDD\|237290
NZ_CP014784.1\|WP_043216328.1\|43115_43709_-\|imidazoleglycerol-phosphate-dehydratase-HisB	unknown	unknown	gnl\|CDD\|234873
NZ_CP014784.1\|WP_061902555.1\|42218_42476_-\|DUF2164-domain-containing-protein	unknown	unknown	gnl\|CDD\|378315
NZ_CP014784.1\|WP_061902546.1\|15295_16030_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223904
NZ_CP014784.1\|WP_021699955.1\|49073_49346_+\|oxidative-damage-protection-protein	unknown	unknown	gnl\|CDD\|180059
NZ_CP014784.1\|WP_061902552.1\|22178_24014_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|226428
NZ_CP014784.1\|WP_061902545.1\|12038_13352_+\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|223864
NZ_CP014784.1\|WP_061902557.1\|43855_44254_+\|acetyl-CoA-sensor-PanZ-family-protein	unknown	unknown	gnl\|CDD\|372195
NZ_CP014784.1\|WP_061902560.1\|48009_49077_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|182805
NZ_CP014784.1\|WP_021699945.1\|40673_41432_-\|imidazole-glycerol-phosphate-synthase-subunit-HisF	unknown	unknown	gnl\|CDD\|234996
NZ_CP014784.1\|WP_061902554.1\|41443_42181_-\|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]imidazole-4--carboxamide-isomerase	unknown	unknown	gnl\|CDD\|179108
NZ_CP014784.1\|WP_061902549.1\|19240_20572_+\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829
NZ_CP014784.1\|WP_061902550.1\|20631_21315_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_CP014784.1\|WP_021699943.1\|14312_15068_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223904
NZ_CP014784.1\|WP_061902547.1\|16200_17922_+\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|226969
NZ_CP014784.1\|WP_061905592.1\|13409_14168_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223904
NZ_CP014784.1\|WP_061902551.1\|21352_22159_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014784.1\|WP_061902559.1\|45790_48013_+\|AsmA-family-protein	unknown	unknown	gnl\|CDD\|282957

Protein	Function_ID	Function_description	E-value
NZ_CP014784.1\|WP_061902548.1\|17924_19244_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	1.06102e-109
NZ_CP014784.1\|WP_061902556.1\|42476_43115_-\|imidazole-glycerol-phosphate-synthase-subunit-HisH	gnl\|CDD\|237290	PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional.	1.96281e-119
NZ_CP014784.1\|WP_043216328.1\|43115_43709_-\|imidazoleglycerol-phosphate-dehydratase-HisB	gnl\|CDD\|234873	PRK00951, hisB, imidazoleglycerol-phosphate dehydratase HisB.	2.18161e-131
NZ_CP014784.1\|WP_061902555.1\|42218_42476_-\|DUF2164-domain-containing-protein	gnl\|CDD\|378315	pfam09932, DUF2164, Uncharacterized conserved protein (DUF2164). This domain, found in various hypothetical prokaryotic proteins, has no known function.	9.31821e-22
NZ_CP014784.1\|WP_061902546.1\|15295_16030_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223904	COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms].	1.46832e-19
NZ_CP014784.1\|WP_021699955.1\|49073_49346_+\|oxidative-damage-protection-protein	gnl\|CDD\|180059	PRK05408, PRK05408, oxidative damage protection protein; Provisional.	9.01501e-58
NZ_CP014784.1\|WP_061902552.1\|22178_24014_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	6.60926e-148
NZ_CP014784.1\|WP_061902545.1\|12038_13352_+\|S41-family-peptidase	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	6.73041e-141
NZ_CP014784.1\|WP_061902557.1\|43855_44254_+\|acetyl-CoA-sensor-PanZ-family-protein	gnl\|CDD\|372195	pfam12568, DUF3749, Acetyltransferase (GNAT) domain. This domain family is found in bacteria, and is approximately 40 amino acids in length. The proteins in this family are acetyltransferases of the GNAT family.	5.51465e-36
NZ_CP014784.1\|WP_061902560.1\|48009_49077_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|182805	PRK10880, PRK10880, adenine DNA glycosylase.	8.18824e-157
NZ_CP014784.1\|WP_021699945.1\|40673_41432_-\|imidazole-glycerol-phosphate-synthase-subunit-HisF	gnl\|CDD\|234996	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional.	2.52785e-179
NZ_CP014784.1\|WP_061902554.1\|41443_42181_-\|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]imidazole-4--carboxamide-isomerase	gnl\|CDD\|179108	PRK00748, PRK00748, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated.	7.13664e-144
NZ_CP014784.1\|WP_061902549.1\|19240_20572_+\|TolC-family-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	1.69108e-60
NZ_CP014784.1\|WP_061902558.1\|44316_45531_-\|sterol-desaturase-family-protein	gnl\|CDD\|377224	pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.	4.28293e-26
NZ_CP014784.1\|WP_021699943.1\|14312_15068_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223904	COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms].	4.51856e-26
NZ_CP014784.1\|WP_061902547.1\|16200_17922_+\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|226969	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only].	0
NZ_CP014784.1\|WP_061902550.1\|20631_21315_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.45729e-11
NZ_CP014784.1\|WP_061905592.1\|13409_14168_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223904	COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms].	5.52106e-22
NZ_CP014784.1\|WP_061902559.1\|45790_48013_+\|AsmA-family-protein	gnl\|CDD\|282957	pfam05170, AsmA, AsmA family. The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.	2.24147e-110

>NZ_CP014784.1|WP_061902552.1|22178_24014_-|tetratricopeptide-repeat-protein
MSANPLESPNLDVALLTALQFAEQAALEPMQLIAVAERLGLAGRPADVVRLYQTWLGHCSSSADYIVQFNLGVTLSQLEQLPAAEQAYRAAIQRKPDFTQAWFNLGAVIERQGRPDNALTIWQSMLDHPLVGPGLNHELYVMVLNAMGRLMEEVRQLQPAEQKLLASLQADPEQPKVIQHWVHLRQKQCEWPVFVPPQGLSRGDLLKATSPLAMLSASDDPGLQLATAMHFVVERVNQRVAQLAPSGGYVHPRIRIAFLSSDFCLHAVSLLTVELFELLDRERFEVYGFCWSREDGSALRARVKAAMDHFIPIGGLDDASAAQLIRQHEIDVLVDLQGLTSGARPNILAYRPAPLQLTYLGFPGPTGLPCVDYVIADRYLIPEDEKPFYSEKPLYLPVFQCSDRQRPVAPLPTRAECGLPDDRFVFCCFNNNYKFNEETFSCWMRILAAVPDSLFWLLADNQWSQANLIACAERHGVSADRLVFAPRVAPELYLARYTVADLFLDAYPFNGGTTANDALWMGLPVLTRSGRTFASRMAGALLTALELPELITENLADYEQRAIELARDPERLRGLRLRLQQGRETSLLFDMPRFVRSFEEGIDAAYTRVRQ
>NZ_CP014784.1|WP_061902551.1|21352_22159_-|hypothetical-protein
MPAEPIHLFHIAYSDATLKAMPAGFELLDNMAHERDDWREYWPIRRFLLEQTLDEEAWYGFFSPRFKEKTGLDALHVREFVQGAAANGADVCTFSPQPDMGAFFLNVFEQEDLFHPGFLDISQAFVRHAGFDVALRQLVMDSRQIVFSNYIVARPSFWRRWLALNERLFALCEQGEGELAEGLRRESSYPGSVPCKVFLMERLASLILTLEPNWRVRAYNTFDCAWSASRLNQFRLEAVLSDALKMAMREQGFAQYRDAFAAMRDKLR
>NZ_CP014784.1|WP_061902550.1|20631_21315_+|class-I-SAM-dependent-methyltransferase
MHPSAMENGKLFFDTYLKPLGQVTVADIGAQNVNGSLKDVCPENATYIGVDFVQGKGVDIIIDDPYKLPFEDGSLDAVVSSSCFEHSEFFWLLFNEIMRVLRPTGLFYLNAPSNGLFHRYPVDCWRFYPDSGNALANWANRCGYNTLMLESYTSYQSNGLWNDYVAVFLKDREHLPQHPQRILSSFQNYANGFIHGQDGILNQQEFPEDGMKLRIISETIAGRLRLK
>NZ_CP014784.1|WP_061902549.1|19240_20572_+|TolC-family-outer-membrane-protein
MTMRLSLLLLGLLLTQPVTAAESTPLALLEAYDNALYHDPTFQAATFDYQASQQEEAIGLAPLLPQLNASGRYGSTRQLSGRDLDGSNEDPRFTSTGLSLSARQVLYDRARAAYYAQAKARGELGESLYDDAFQELFPRVVETYFEVARQENELSLSRQQKIAIEGLVKQTRRLFEVGDGTITDIDEAQARLDLVKAQEIEAEARLQAALHALSGRTGVRVASIQAMGENLPGAAPLRSEEDLAFWQQQAHSAAPRMDARRDSVRVAEAELRAQKAGHYPQLALVGELNHSDRDDLADDFRRQSSSYLGLSLDVPLYAGGGVNAASRKSQYALSSAQAQLDDEARQLSEDIERNYLGVVSGYAKCKALQTAVRSNQRALESAEKGYQAGVRSTVDILNAQQTLFTARRDLLNSKLLMLQSLVELHARSGLMNRAVLQQVEALF
>NZ_CP014784.1|WP_061902548.1|17924_19244_+|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MTVAQNLPADIRDANRTARLGLWIIAIGLGGFLIWAALAPLAQGVAGSGTVVVAGERKTVQALAGGAVDDILVREGDQVKAGQLLIQLNTIQAQAQLEVALGQWFSARASEARLSSERHGLNNIDWPADLLSHQDDPRAKRNMELQNNLFETRRAELTSRQQIIENQTASLQEQLRAYEQIRNHLETQLDYQRKELDGLRQLAAEGYVPRNRLFEAERNSAQLSAQLTSGIADIGKTKQGIAESRLQSLQLQQSFRIEAESQLASTSAEASSLVERIKALEFEVDNAAIRAPVGGQVIDLSVHTEGGVIPAAQRLMDIVPEGSAWIIKAKFEPLVADRLKIGLPVNLRFSSLNSATLPVVDGKVLTVSGDQLLDEQTRLPYFAVEVEVGAEAVAKLRNHGLEVKPGMQAEVMVQTGERTFLKYLLSPLEKRIRGALKEE
>NZ_CP014784.1|WP_061902547.1|16200_17922_+|type-I-secretion-system-permease/ATPase
MRLRLDPARDIDAALLRYRSLFWVIALFSGVINLLTVVPAIYMMQVFDRVMASRNEMTLLLLTLLALGLFILSSLVEWIRGQVMIKMSVGIDLDLGERLFGVAFQKSLKEHNANPAQVLSDLNALRQFLTGSALISLLDLPWMPIFLIVTGLLHPWLGLFTLLGALILFGLAIWNEHATRQGLDEANQISVHSSKYVNSTLQNAEVIQAMGMLGNLQKRWAALQQRLIGAQTSASDKAARISTITRLVRTAWQSLAMGVAMLLILEGQITGGVMMAAGFLISKAMLPAEQAISSWKQLDSAKASYKRLCQLLDEFPRKVERMSLPAPTGAVRIERLVVNPPNSKRPAVNGIDLALNKGEVLAVIGPSASGKSSLARAMVGVWAPAYGSVRLDGAEIGQWDAEVLGPHLGYLPQDIELFDGTVAENIARFGQADSAQVIEAATLAGIHDMILRFPQGYDTPLGPGGLGLSGGQKQRIGLARALYGKPALVVLDEPNSNLDDAGEAALVAAIDALRKHGSTVVLVTHRPNVLAVVDKLLVLQDGTQKMFGPRDQVLKALFPPATPASASPSAQTS
>NZ_CP014784.1|WP_061902546.1|15295_16030_-|ABC-transporter-substrate-binding-protein
MLFPRLLTLFLLLVGTAQARAESLVLLTENLPPFNMAVSGGNFARDDGITGISAETMRLVCQRAGVECQQILRFPWERVYNQALNDAGYGLFSVARTAERETLFKWVGPIASEDWVLLARADSPIQLSSLEQAKQYRLGGYKGDAPTNKVVESGLDVQQSLYDKENPERLAKGQIDLWVTSSVAGQYLARQQGYQDFRVVLTFGRGDLYLALNQQTTDATVDKLRAALEQLRSEGALQGVMQKY
>NZ_CP014784.1|WP_021699943.1|14312_15068_-|ABC-transporter-substrate-binding-protein
MLKYLHKGLLCGLLLLAGGAHAELSDDYKVILLTENFPPFNMAIDEKNFARDDNIDGISADLVREVFKRAGIGYNLSLRFPWDRIYRLTLDKPNYGLFSTTYTDERKPLFKWVGPLAKSEWVLLAAPGSTIKVGSLEEAAKYKIGAYKNDAVSQHLESKGLKPDNSLRDQENVAKLMSGKIDLWATTDPVGRYIAKQEGASGLQVVLRFNSAELFLALNKETPDEVVERLQKALDELRNEGFVDEITSSYL
>NZ_CP014784.1|WP_061905592.1|13409_14168_-|ABC-transporter-substrate-binding-protein
MLKRLSMLLLGVGLLFSSVVRAELPADYKVVLLTENFPPYNMANNGKNYAREENLEGIAVEVVRETFKKAGIDYHMTLRFPWARIYKMALENANHAVFVAAKLPEREKLFKWVGPIGPDDWVMLARADSSISLISLEQAKSYRVGAYKGDAIDEHLRKQGLEPISSLRDQENAHKLQEGKIDLWATGDPAGRYLAKQEGITGLKTVLRFDSAQLYLALNPETPDEVVERLQKALDELRASGRVDQIFQSYVQ
>NZ_CP014784.1|WP_061902545.1|12038_13352_+|S41-family-peptidase
MQQFRRLTPLALALGLMLGSPTLLAAEAVEVPAVEAVNGKAPLPLEELRTFAEVMDRIKAAYVEPVDDKTLLENAIKGMLGNLDPHSAYLEPEAFAELQESTSGEFGGLGIEVGTEDGFIKVVSPIDDTPASKAGIQPGDLIVKIDGQPTKGLSLMEAVDKMRGKAGSKINLTLVREGGKPFDVELTRAVIKVKSVRSQLLEDGYGLIRISQFQVNTGEEVGKALAKLRKDNGKKLRGLVLDLRNNPGGVLQAAVEVADHFLKKGLIVYTEGRIANSELRFNADPADASEGVPLVVLINGGSASASEIVAGALQDHKRGVLMGTDSFGKGSVQTVLPLNNDRALKLTTALYFTPNGRSIQAQGIVPDIEVARAKLTREDGGELIKEADLAGHLGNGNGGADKPSGSKQQKAPRPQDDDYQLSQALNLLKGLNVTRGE
>NZ_CP014784.1|WP_021699945.1|40673_41432_-|imidazole-glycerol-phosphate-synthase-subunit-HisF
MALAKRIIPCLDVDNGRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRTVQDIRNLLNAGADKVSINTAAVFNPEFVGEAAARFGSQCIVVAIDAKKVAPGRWEIFTHGGRKPTGLDAVLWAKKMEDLGAGEILLTSMDQDGVKSGYDLGVTRAISETVGIPVIASGGVGNLEHLAAGILEGKADAVLAASIFHFGEYSVPEAKAYLASRGIVVR
>NZ_CP014784.1|WP_061902554.1|41443_42181_-|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]imidazole-4--carboxamide-isomerase
MLIIPAIDLKDGACVRLRQGRMEDSTVFSDDPVSMAAKWVEGGCRRLHLVDLNGAFEGQPVNGEVVTAIAKRYPNLPIQIGGGIRTLETIEHYVKAGVSYVIIGTKAVKEPEFVTEACKAFPGKVIVGLDAKDGFVATDGWAEVSSVQATDLAKRFEADGVSAIVYTDIAKDGMMQGCNVEATAALAAASRIPVIASGGIHNLSDIEKLLLARSPGIIGAITGRAIYEGTLDVAEAQAFCDSFKG
>NZ_CP014784.1|WP_061902555.1|42218_42476_-|DUF2164-domain-containing-protein
MSRGKKVALLELEGGQQQAALQVLKNFLEDRFELELGSFEVQEVLDLIGREIAPHYYNKAIADTQALLAERFASLESDLWALEKS
>NZ_CP014784.1|WP_061902556.1|42476_43115_-|imidazole-glycerol-phosphate-synthase-subunit-HisH
MQTVAVIDYGMGNLHSVAKALEHVGAGRVLVTSDAAVIREADRVVFPGVGAIRDCMAEIKRLGFDELVREVSQDRPFLGICVGMQALLERSEENGGVDCIGLFPGQVRFFGKDLHEDGEHLKVPHMGWNEVEQVVDHPLWHEIPDMGRFYFVHSYYIEAGNPAQVVGRGHYGKDFAAALAEGSKFAVQFHPEKSHTHGLQLLQNFVGWDGRW
>NZ_CP014784.1|WP_043216328.1|43115_43709_-|imidazoleglycerol-phosphate-dehydratase-HisB
MAERTASVERNTLETQIKVSINLDGTGKAKFDIGVPFLEHMLDQIARHGLIDLDIHCKGDLHIDDHHTVEDVGITLGQAFAKAVGDKKGMTRYGHSYVPLDEALSRVVIDFSGRPGLQMHVPFTRAVVGGFDVDLFQEFFQGFVNHAQVSLHIDNLRGTNTHHQIETVFKAFGRALRMAVELDPRMAGQMPSTKGCL
>NZ_CP014784.1|WP_061902557.1|43855_44254_+|acetyl-CoA-sensor-PanZ-family-protein
MPVLVETVSRPSAQDHTDLGKVYADAPDWLLAPYASVDALLADGIGSGQLIAGRFNDRLLGAALLQRGDTHWRLSHLCVRKVTRKRGVGRRILDEALRLAREAGKPLHLAAPRDHLESQALAARTGLPLDDL
>NZ_CP014784.1|WP_061902558.1|44316_45531_-|sterol-desaturase-family-protein
MNVAVLAVPLYILLILLELAYERWSGRHTYRLADAVTSIDTAVLRMLLEGPLRLLLVVPYAWLYEHARLWTLDPASPWTWLLGFVAVDFCFYWAHRSLHRYNLLWGAHQPHHSSEDFNLSTALRKGAFQTAFDWPFYLPLALLGLPLPLFLVLLGAQLVYQFWIHSQHVGRLGMLEWFMVTPSNHRVHHGQNDRYIDKNHGGVFIVWDRLFGTFADETEAVRYGVTTPVRTFDPLRLQFSWWRLLWADAVATRSWWDKLRLWWMPTGWRPADVRARPWPKMGAEKFDCPSQAGLRWYAFAQFVAINALTLVYLASVKQTGWLLPLLLGPLILFGCVSLGWLFEGRRALWRLEVLRLALLAAFALVWGLWLAPAQWLFGLGLAGLCAASLLWLVWLAARPQMAQA
>NZ_CP014784.1|WP_061902559.1|45790_48013_+|AsmA-family-protein
MKAFGKILGLVMLGLLLIVIGLGFALTHLFDPNDYKDEIQQLARDKANLELQLKGDIGWSLFPWLGLELTDATLASADSPDQPFANLRLLGLSVRVLPLLRREVQMSNIRVDGLDLTLQRDDKGRGNWEGVGQPAKREATPTATPAQPPAQSPVADEAAQPGQPLKLDIDSLTISNSRVDYQDAKSGQQFSAEGIELSTGAIREGADIPVKLLAFLGSNQPVLRAKTELQGLLRFDRTLKRYQLQDLKLAGEASGEPLNGKTLTFASQGQLLLDQSAQVAEWTGIKLSANQLRALGELKLRDLDKTAQLEGNLSLAQFNLREFLDGIGVVLPAMRDNTTLSRFEMSTRLAGTPTSINFNDLSLKLDDSTFSGNLALSDIAKQALRLQLKGDKLDLDRYLPPENKDANAGAARQNEVKQAVAAAGNSGTTPLPGAPTQQAWSSTPLLPLETLRKLDIEAAVGLGQLTLSKLPIEDARIALTAKGGLINLKELRGDLHGGEFAVRSQLDARPAIPLLTASKQIKRIPLEKLLEARGEKAPVRGLLDLNADVRTQGNSEKAWVDALNGNASFSLSDGVLVDANLEQQLCQGIATLNRKSLSGEPRGKDTPFEELHGNLKFTNGVASNPDLKARIPGLTVNGDGAVDLRVLGMDYRVGIVIEGDKTAMPDPACQVNERYVGLEWPLRCRGPLELGAKACRLDKDGLGKIAAKLAGNKLEQKIEEKLGDKVSPELKDALKGLFNR
>NZ_CP014784.1|WP_061902560.1|48009_49077_+|A/G-specific-adenine-glycosylase
MSPEQFNGAVLAWYDQQGRKNLPWQQGITPYRVWISEIMLQQTQVSTVLGYFDRFMEALPSVQALADAAEDEVLHLWTGLGYYTRARNLHKAAKLVVEQHGGEFPRSVEQLAELPGIGRSTAGAIASLSMGLRAPILDGNVKRVLARYQAQQGYPGEPKVAAQLWQLAEQLTPHERVNHYTQAMMDLGATLCTRSKPSCLLCPVREGCRAHLLGRETDFPEPKPRKALPQKRTLMPLLANAEGAILLYRRPSSGLWGGLWSLPELDDLDALRELARQHALHLDEPRELAGLTHTFSHFQLAIEPWLVRVEQAGGAVAEGDWLWYNLATPPRLGLAAPVKKLLKRAAQELNAGEAS
>NZ_CP014784.1|WP_021699955.1|49073_49346_+|oxidative-damage-protection-protein
MSRTVHCRKYNEQLPGLDRPPYPGAKGQDIYDNVSKKAWDEWQAHQTMLINERRLNMMNAEDRKFLQAEMDKFLSGEDYAKADGYVPPSA

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Crispr_ID: NZ_CP014784_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014784_1

37151-37222

Orphan

Consensus_repeat	Method
TCAATCTGCGCGGTGGTCATGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014784_1

>merge|NZ_CP014784|1|37151-37222|CRISPRCasFinder
CGCAGCTGCGCGGTGGACATGGCAGCGACCTGGGTCGAAACCAGAGCAGCCATGTGCGCGGTGGTCCAGGCC

>NZ_CP014784|1|1|37151-37222|CRISPRCasFinder
CGCAGCTGCGCGGTGGACATGGC	AGCGACCTGGGTCGAAACCAGAGCA
GCCATGTGCGCGGTGGTCCAGGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014784.1\|WP_061902558.1\|44316_45531_-\|sterol-desaturase-family-protein	unknown	unknown	gnl\|CDD\|377224
NZ_CP014784.1\|WP_061902548.1\|17924_19244_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP014784.1\|WP_061902556.1\|42476_43115_-\|imidazole-glycerol-phosphate-synthase-subunit-HisH	unknown	unknown	gnl\|CDD\|237290
NZ_CP014784.1\|WP_043216328.1\|43115_43709_-\|imidazoleglycerol-phosphate-dehydratase-HisB	unknown	unknown	gnl\|CDD\|234873
NZ_CP014784.1\|WP_061902555.1\|42218_42476_-\|DUF2164-domain-containing-protein	unknown	unknown	gnl\|CDD\|378315
NZ_CP014784.1\|WP_061902546.1\|15295_16030_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223904
NZ_CP014784.1\|WP_021699955.1\|49073_49346_+\|oxidative-damage-protection-protein	unknown	unknown	gnl\|CDD\|180059
NZ_CP014784.1\|WP_061902552.1\|22178_24014_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|226428
NZ_CP014784.1\|WP_061902545.1\|12038_13352_+\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|223864
NZ_CP014784.1\|WP_061902557.1\|43855_44254_+\|acetyl-CoA-sensor-PanZ-family-protein	unknown	unknown	gnl\|CDD\|372195
NZ_CP014784.1\|WP_061902560.1\|48009_49077_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|182805
NZ_CP014784.1\|WP_021699945.1\|40673_41432_-\|imidazole-glycerol-phosphate-synthase-subunit-HisF	unknown	unknown	gnl\|CDD\|234996
NZ_CP014784.1\|WP_061902554.1\|41443_42181_-\|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]imidazole-4--carboxamide-isomerase	unknown	unknown	gnl\|CDD\|179108
NZ_CP014784.1\|WP_061902549.1\|19240_20572_+\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829
NZ_CP014784.1\|WP_061902550.1\|20631_21315_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_CP014784.1\|WP_021699943.1\|14312_15068_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223904
NZ_CP014784.1\|WP_061902547.1\|16200_17922_+\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|226969
NZ_CP014784.1\|WP_061905592.1\|13409_14168_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223904
NZ_CP014784.1\|WP_061902551.1\|21352_22159_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014784.1\|WP_061902559.1\|45790_48013_+\|AsmA-family-protein	unknown	unknown	gnl\|CDD\|282957

Protein	Function_ID	Function_description	E-value
NZ_CP014784.1\|WP_061902548.1\|17924_19244_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	1.06102e-109
NZ_CP014784.1\|WP_061902556.1\|42476_43115_-\|imidazole-glycerol-phosphate-synthase-subunit-HisH	gnl\|CDD\|237290	PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional.	1.96281e-119
NZ_CP014784.1\|WP_043216328.1\|43115_43709_-\|imidazoleglycerol-phosphate-dehydratase-HisB	gnl\|CDD\|234873	PRK00951, hisB, imidazoleglycerol-phosphate dehydratase HisB.	2.18161e-131
NZ_CP014784.1\|WP_061902555.1\|42218_42476_-\|DUF2164-domain-containing-protein	gnl\|CDD\|378315	pfam09932, DUF2164, Uncharacterized conserved protein (DUF2164). This domain, found in various hypothetical prokaryotic proteins, has no known function.	9.31821e-22
NZ_CP014784.1\|WP_061902546.1\|15295_16030_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223904	COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms].	1.46832e-19
NZ_CP014784.1\|WP_021699955.1\|49073_49346_+\|oxidative-damage-protection-protein	gnl\|CDD\|180059	PRK05408, PRK05408, oxidative damage protection protein; Provisional.	9.01501e-58
NZ_CP014784.1\|WP_061902552.1\|22178_24014_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	6.60926e-148
NZ_CP014784.1\|WP_061902545.1\|12038_13352_+\|S41-family-peptidase	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	6.73041e-141
NZ_CP014784.1\|WP_061902557.1\|43855_44254_+\|acetyl-CoA-sensor-PanZ-family-protein	gnl\|CDD\|372195	pfam12568, DUF3749, Acetyltransferase (GNAT) domain. This domain family is found in bacteria, and is approximately 40 amino acids in length. The proteins in this family are acetyltransferases of the GNAT family.	5.51465e-36
NZ_CP014784.1\|WP_061902560.1\|48009_49077_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|182805	PRK10880, PRK10880, adenine DNA glycosylase.	8.18824e-157
NZ_CP014784.1\|WP_021699945.1\|40673_41432_-\|imidazole-glycerol-phosphate-synthase-subunit-HisF	gnl\|CDD\|234996	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional.	2.52785e-179
NZ_CP014784.1\|WP_061902554.1\|41443_42181_-\|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]imidazole-4--carboxamide-isomerase	gnl\|CDD\|179108	PRK00748, PRK00748, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated.	7.13664e-144
NZ_CP014784.1\|WP_061902549.1\|19240_20572_+\|TolC-family-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	1.69108e-60
NZ_CP014784.1\|WP_061902558.1\|44316_45531_-\|sterol-desaturase-family-protein	gnl\|CDD\|377224	pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.	4.28293e-26
NZ_CP014784.1\|WP_021699943.1\|14312_15068_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223904	COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms].	4.51856e-26
NZ_CP014784.1\|WP_061902547.1\|16200_17922_+\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|226969	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only].	0
NZ_CP014784.1\|WP_061902550.1\|20631_21315_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.45729e-11
NZ_CP014784.1\|WP_061905592.1\|13409_14168_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223904	COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms].	5.52106e-22
NZ_CP014784.1\|WP_061902559.1\|45790_48013_+\|AsmA-family-protein	gnl\|CDD\|282957	pfam05170, AsmA, AsmA family. The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.	2.24147e-110

>NZ_CP014784.1|WP_061902552.1|22178_24014_-|tetratricopeptide-repeat-protein
MSANPLESPNLDVALLTALQFAEQAALEPMQLIAVAERLGLAGRPADVVRLYQTWLGHCSSSADYIVQFNLGVTLSQLEQLPAAEQAYRAAIQRKPDFTQAWFNLGAVIERQGRPDNALTIWQSMLDHPLVGPGLNHELYVMVLNAMGRLMEEVRQLQPAEQKLLASLQADPEQPKVIQHWVHLRQKQCEWPVFVPPQGLSRGDLLKATSPLAMLSASDDPGLQLATAMHFVVERVNQRVAQLAPSGGYVHPRIRIAFLSSDFCLHAVSLLTVELFELLDRERFEVYGFCWSREDGSALRARVKAAMDHFIPIGGLDDASAAQLIRQHEIDVLVDLQGLTSGARPNILAYRPAPLQLTYLGFPGPTGLPCVDYVIADRYLIPEDEKPFYSEKPLYLPVFQCSDRQRPVAPLPTRAECGLPDDRFVFCCFNNNYKFNEETFSCWMRILAAVPDSLFWLLADNQWSQANLIACAERHGVSADRLVFAPRVAPELYLARYTVADLFLDAYPFNGGTTANDALWMGLPVLTRSGRTFASRMAGALLTALELPELITENLADYEQRAIELARDPERLRGLRLRLQQGRETSLLFDMPRFVRSFEEGIDAAYTRVRQ
>NZ_CP014784.1|WP_061902551.1|21352_22159_-|hypothetical-protein
MPAEPIHLFHIAYSDATLKAMPAGFELLDNMAHERDDWREYWPIRRFLLEQTLDEEAWYGFFSPRFKEKTGLDALHVREFVQGAAANGADVCTFSPQPDMGAFFLNVFEQEDLFHPGFLDISQAFVRHAGFDVALRQLVMDSRQIVFSNYIVARPSFWRRWLALNERLFALCEQGEGELAEGLRRESSYPGSVPCKVFLMERLASLILTLEPNWRVRAYNTFDCAWSASRLNQFRLEAVLSDALKMAMREQGFAQYRDAFAAMRDKLR
>NZ_CP014784.1|WP_061902550.1|20631_21315_+|class-I-SAM-dependent-methyltransferase
MHPSAMENGKLFFDTYLKPLGQVTVADIGAQNVNGSLKDVCPENATYIGVDFVQGKGVDIIIDDPYKLPFEDGSLDAVVSSSCFEHSEFFWLLFNEIMRVLRPTGLFYLNAPSNGLFHRYPVDCWRFYPDSGNALANWANRCGYNTLMLESYTSYQSNGLWNDYVAVFLKDREHLPQHPQRILSSFQNYANGFIHGQDGILNQQEFPEDGMKLRIISETIAGRLRLK
>NZ_CP014784.1|WP_061902549.1|19240_20572_+|TolC-family-outer-membrane-protein
MTMRLSLLLLGLLLTQPVTAAESTPLALLEAYDNALYHDPTFQAATFDYQASQQEEAIGLAPLLPQLNASGRYGSTRQLSGRDLDGSNEDPRFTSTGLSLSARQVLYDRARAAYYAQAKARGELGESLYDDAFQELFPRVVETYFEVARQENELSLSRQQKIAIEGLVKQTRRLFEVGDGTITDIDEAQARLDLVKAQEIEAEARLQAALHALSGRTGVRVASIQAMGENLPGAAPLRSEEDLAFWQQQAHSAAPRMDARRDSVRVAEAELRAQKAGHYPQLALVGELNHSDRDDLADDFRRQSSSYLGLSLDVPLYAGGGVNAASRKSQYALSSAQAQLDDEARQLSEDIERNYLGVVSGYAKCKALQTAVRSNQRALESAEKGYQAGVRSTVDILNAQQTLFTARRDLLNSKLLMLQSLVELHARSGLMNRAVLQQVEALF
>NZ_CP014784.1|WP_061902548.1|17924_19244_+|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MTVAQNLPADIRDANRTARLGLWIIAIGLGGFLIWAALAPLAQGVAGSGTVVVAGERKTVQALAGGAVDDILVREGDQVKAGQLLIQLNTIQAQAQLEVALGQWFSARASEARLSSERHGLNNIDWPADLLSHQDDPRAKRNMELQNNLFETRRAELTSRQQIIENQTASLQEQLRAYEQIRNHLETQLDYQRKELDGLRQLAAEGYVPRNRLFEAERNSAQLSAQLTSGIADIGKTKQGIAESRLQSLQLQQSFRIEAESQLASTSAEASSLVERIKALEFEVDNAAIRAPVGGQVIDLSVHTEGGVIPAAQRLMDIVPEGSAWIIKAKFEPLVADRLKIGLPVNLRFSSLNSATLPVVDGKVLTVSGDQLLDEQTRLPYFAVEVEVGAEAVAKLRNHGLEVKPGMQAEVMVQTGERTFLKYLLSPLEKRIRGALKEE
>NZ_CP014784.1|WP_061902547.1|16200_17922_+|type-I-secretion-system-permease/ATPase
MRLRLDPARDIDAALLRYRSLFWVIALFSGVINLLTVVPAIYMMQVFDRVMASRNEMTLLLLTLLALGLFILSSLVEWIRGQVMIKMSVGIDLDLGERLFGVAFQKSLKEHNANPAQVLSDLNALRQFLTGSALISLLDLPWMPIFLIVTGLLHPWLGLFTLLGALILFGLAIWNEHATRQGLDEANQISVHSSKYVNSTLQNAEVIQAMGMLGNLQKRWAALQQRLIGAQTSASDKAARISTITRLVRTAWQSLAMGVAMLLILEGQITGGVMMAAGFLISKAMLPAEQAISSWKQLDSAKASYKRLCQLLDEFPRKVERMSLPAPTGAVRIERLVVNPPNSKRPAVNGIDLALNKGEVLAVIGPSASGKSSLARAMVGVWAPAYGSVRLDGAEIGQWDAEVLGPHLGYLPQDIELFDGTVAENIARFGQADSAQVIEAATLAGIHDMILRFPQGYDTPLGPGGLGLSGGQKQRIGLARALYGKPALVVLDEPNSNLDDAGEAALVAAIDALRKHGSTVVLVTHRPNVLAVVDKLLVLQDGTQKMFGPRDQVLKALFPPATPASASPSAQTS
>NZ_CP014784.1|WP_061902546.1|15295_16030_-|ABC-transporter-substrate-binding-protein
MLFPRLLTLFLLLVGTAQARAESLVLLTENLPPFNMAVSGGNFARDDGITGISAETMRLVCQRAGVECQQILRFPWERVYNQALNDAGYGLFSVARTAERETLFKWVGPIASEDWVLLARADSPIQLSSLEQAKQYRLGGYKGDAPTNKVVESGLDVQQSLYDKENPERLAKGQIDLWVTSSVAGQYLARQQGYQDFRVVLTFGRGDLYLALNQQTTDATVDKLRAALEQLRSEGALQGVMQKY
>NZ_CP014784.1|WP_021699943.1|14312_15068_-|ABC-transporter-substrate-binding-protein
MLKYLHKGLLCGLLLLAGGAHAELSDDYKVILLTENFPPFNMAIDEKNFARDDNIDGISADLVREVFKRAGIGYNLSLRFPWDRIYRLTLDKPNYGLFSTTYTDERKPLFKWVGPLAKSEWVLLAAPGSTIKVGSLEEAAKYKIGAYKNDAVSQHLESKGLKPDNSLRDQENVAKLMSGKIDLWATTDPVGRYIAKQEGASGLQVVLRFNSAELFLALNKETPDEVVERLQKALDELRNEGFVDEITSSYL
>NZ_CP014784.1|WP_061905592.1|13409_14168_-|ABC-transporter-substrate-binding-protein
MLKRLSMLLLGVGLLFSSVVRAELPADYKVVLLTENFPPYNMANNGKNYAREENLEGIAVEVVRETFKKAGIDYHMTLRFPWARIYKMALENANHAVFVAAKLPEREKLFKWVGPIGPDDWVMLARADSSISLISLEQAKSYRVGAYKGDAIDEHLRKQGLEPISSLRDQENAHKLQEGKIDLWATGDPAGRYLAKQEGITGLKTVLRFDSAQLYLALNPETPDEVVERLQKALDELRASGRVDQIFQSYVQ
>NZ_CP014784.1|WP_061902545.1|12038_13352_+|S41-family-peptidase
MQQFRRLTPLALALGLMLGSPTLLAAEAVEVPAVEAVNGKAPLPLEELRTFAEVMDRIKAAYVEPVDDKTLLENAIKGMLGNLDPHSAYLEPEAFAELQESTSGEFGGLGIEVGTEDGFIKVVSPIDDTPASKAGIQPGDLIVKIDGQPTKGLSLMEAVDKMRGKAGSKINLTLVREGGKPFDVELTRAVIKVKSVRSQLLEDGYGLIRISQFQVNTGEEVGKALAKLRKDNGKKLRGLVLDLRNNPGGVLQAAVEVADHFLKKGLIVYTEGRIANSELRFNADPADASEGVPLVVLINGGSASASEIVAGALQDHKRGVLMGTDSFGKGSVQTVLPLNNDRALKLTTALYFTPNGRSIQAQGIVPDIEVARAKLTREDGGELIKEADLAGHLGNGNGGADKPSGSKQQKAPRPQDDDYQLSQALNLLKGLNVTRGE
>NZ_CP014784.1|WP_021699945.1|40673_41432_-|imidazole-glycerol-phosphate-synthase-subunit-HisF
MALAKRIIPCLDVDNGRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRTVQDIRNLLNAGADKVSINTAAVFNPEFVGEAAARFGSQCIVVAIDAKKVAPGRWEIFTHGGRKPTGLDAVLWAKKMEDLGAGEILLTSMDQDGVKSGYDLGVTRAISETVGIPVIASGGVGNLEHLAAGILEGKADAVLAASIFHFGEYSVPEAKAYLASRGIVVR
>NZ_CP014784.1|WP_061902554.1|41443_42181_-|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]imidazole-4--carboxamide-isomerase
MLIIPAIDLKDGACVRLRQGRMEDSTVFSDDPVSMAAKWVEGGCRRLHLVDLNGAFEGQPVNGEVVTAIAKRYPNLPIQIGGGIRTLETIEHYVKAGVSYVIIGTKAVKEPEFVTEACKAFPGKVIVGLDAKDGFVATDGWAEVSSVQATDLAKRFEADGVSAIVYTDIAKDGMMQGCNVEATAALAAASRIPVIASGGIHNLSDIEKLLLARSPGIIGAITGRAIYEGTLDVAEAQAFCDSFKG
>NZ_CP014784.1|WP_061902555.1|42218_42476_-|DUF2164-domain-containing-protein
MSRGKKVALLELEGGQQQAALQVLKNFLEDRFELELGSFEVQEVLDLIGREIAPHYYNKAIADTQALLAERFASLESDLWALEKS
>NZ_CP014784.1|WP_061902556.1|42476_43115_-|imidazole-glycerol-phosphate-synthase-subunit-HisH
MQTVAVIDYGMGNLHSVAKALEHVGAGRVLVTSDAAVIREADRVVFPGVGAIRDCMAEIKRLGFDELVREVSQDRPFLGICVGMQALLERSEENGGVDCIGLFPGQVRFFGKDLHEDGEHLKVPHMGWNEVEQVVDHPLWHEIPDMGRFYFVHSYYIEAGNPAQVVGRGHYGKDFAAALAEGSKFAVQFHPEKSHTHGLQLLQNFVGWDGRW
>NZ_CP014784.1|WP_043216328.1|43115_43709_-|imidazoleglycerol-phosphate-dehydratase-HisB
MAERTASVERNTLETQIKVSINLDGTGKAKFDIGVPFLEHMLDQIARHGLIDLDIHCKGDLHIDDHHTVEDVGITLGQAFAKAVGDKKGMTRYGHSYVPLDEALSRVVIDFSGRPGLQMHVPFTRAVVGGFDVDLFQEFFQGFVNHAQVSLHIDNLRGTNTHHQIETVFKAFGRALRMAVELDPRMAGQMPSTKGCL
>NZ_CP014784.1|WP_061902557.1|43855_44254_+|acetyl-CoA-sensor-PanZ-family-protein
MPVLVETVSRPSAQDHTDLGKVYADAPDWLLAPYASVDALLADGIGSGQLIAGRFNDRLLGAALLQRGDTHWRLSHLCVRKVTRKRGVGRRILDEALRLAREAGKPLHLAAPRDHLESQALAARTGLPLDDL
>NZ_CP014784.1|WP_061902558.1|44316_45531_-|sterol-desaturase-family-protein
MNVAVLAVPLYILLILLELAYERWSGRHTYRLADAVTSIDTAVLRMLLEGPLRLLLVVPYAWLYEHARLWTLDPASPWTWLLGFVAVDFCFYWAHRSLHRYNLLWGAHQPHHSSEDFNLSTALRKGAFQTAFDWPFYLPLALLGLPLPLFLVLLGAQLVYQFWIHSQHVGRLGMLEWFMVTPSNHRVHHGQNDRYIDKNHGGVFIVWDRLFGTFADETEAVRYGVTTPVRTFDPLRLQFSWWRLLWADAVATRSWWDKLRLWWMPTGWRPADVRARPWPKMGAEKFDCPSQAGLRWYAFAQFVAINALTLVYLASVKQTGWLLPLLLGPLILFGCVSLGWLFEGRRALWRLEVLRLALLAAFALVWGLWLAPAQWLFGLGLAGLCAASLLWLVWLAARPQMAQA
>NZ_CP014784.1|WP_061902559.1|45790_48013_+|AsmA-family-protein
MKAFGKILGLVMLGLLLIVIGLGFALTHLFDPNDYKDEIQQLARDKANLELQLKGDIGWSLFPWLGLELTDATLASADSPDQPFANLRLLGLSVRVLPLLRREVQMSNIRVDGLDLTLQRDDKGRGNWEGVGQPAKREATPTATPAQPPAQSPVADEAAQPGQPLKLDIDSLTISNSRVDYQDAKSGQQFSAEGIELSTGAIREGADIPVKLLAFLGSNQPVLRAKTELQGLLRFDRTLKRYQLQDLKLAGEASGEPLNGKTLTFASQGQLLLDQSAQVAEWTGIKLSANQLRALGELKLRDLDKTAQLEGNLSLAQFNLREFLDGIGVVLPAMRDNTTLSRFEMSTRLAGTPTSINFNDLSLKLDDSTFSGNLALSDIAKQALRLQLKGDKLDLDRYLPPENKDANAGAARQNEVKQAVAAAGNSGTTPLPGAPTQQAWSSTPLLPLETLRKLDIEAAVGLGQLTLSKLPIEDARIALTAKGGLINLKELRGDLHGGEFAVRSQLDARPAIPLLTASKQIKRIPLEKLLEARGEKAPVRGLLDLNADVRTQGNSEKAWVDALNGNASFSLSDGVLVDANLEQQLCQGIATLNRKSLSGEPRGKDTPFEELHGNLKFTNGVASNPDLKARIPGLTVNGDGAVDLRVLGMDYRVGIVIEGDKTAMPDPACQVNERYVGLEWPLRCRGPLELGAKACRLDKDGLGKIAAKLAGNKLEQKIEEKLGDKVSPELKDALKGLFNR
>NZ_CP014784.1|WP_061902560.1|48009_49077_+|A/G-specific-adenine-glycosylase
MSPEQFNGAVLAWYDQQGRKNLPWQQGITPYRVWISEIMLQQTQVSTVLGYFDRFMEALPSVQALADAAEDEVLHLWTGLGYYTRARNLHKAAKLVVEQHGGEFPRSVEQLAELPGIGRSTAGAIASLSMGLRAPILDGNVKRVLARYQAQQGYPGEPKVAAQLWQLAEQLTPHERVNHYTQAMMDLGATLCTRSKPSCLLCPVREGCRAHLLGRETDFPEPKPRKALPQKRTLMPLLANAEGAILLYRRPSSGLWGGLWSLPELDDLDALRELARQHALHLDEPRELAGLTHTFSHFQLAIEPWLVRVEQAGGAVAEGDWLWYNLATPPRLGLAAPVKKLLKRAAQELNAGEAS
>NZ_CP014784.1|WP_021699955.1|49073_49346_+|oxidative-damage-protection-protein
MSRTVHCRKYNEQLPGLDRPPYPGAKGQDIYDNVSKKAWDEWQAHQTMLINERRLNMMNAEDRKFLQAEMDKFLSGEDYAKADGYVPPSA

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Crispr_ID: NZ_CP014784_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014784_2

37322-37393

Orphan

Consensus_repeat	Method
TCAATCTGCGCGGTGGTCATGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014784_2

>merge|NZ_CP014784|2|37322-37393|CRISPRCasFinder
TCAATCTGCGCGGTGGTCATGGCGACCAGTTGCGGAATGGTCAGCGCCTCGACCTGCGGAGCGGTCAGCGCT

>NZ_CP014784|2|2|37322-37393|CRISPRCasFinder
TCAATCTGCGCGGTGGTCATGGC	GACCAGTTGCGGAATGGTCAGCGCC
TCGACCTGCGGAGCGGTCAGCGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014784.1\|WP_061902558.1\|44316_45531_-\|sterol-desaturase-family-protein	unknown	unknown	gnl\|CDD\|377224
NZ_CP014784.1\|WP_061902548.1\|17924_19244_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP014784.1\|WP_061902556.1\|42476_43115_-\|imidazole-glycerol-phosphate-synthase-subunit-HisH	unknown	unknown	gnl\|CDD\|237290
NZ_CP014784.1\|WP_043216328.1\|43115_43709_-\|imidazoleglycerol-phosphate-dehydratase-HisB	unknown	unknown	gnl\|CDD\|234873
NZ_CP014784.1\|WP_061902555.1\|42218_42476_-\|DUF2164-domain-containing-protein	unknown	unknown	gnl\|CDD\|378315
NZ_CP014784.1\|WP_061902546.1\|15295_16030_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223904
NZ_CP014784.1\|WP_021699955.1\|49073_49346_+\|oxidative-damage-protection-protein	unknown	unknown	gnl\|CDD\|180059
NZ_CP014784.1\|WP_061902552.1\|22178_24014_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|226428
NZ_CP014784.1\|WP_061902545.1\|12038_13352_+\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|223864
NZ_CP014784.1\|WP_061902557.1\|43855_44254_+\|acetyl-CoA-sensor-PanZ-family-protein	unknown	unknown	gnl\|CDD\|372195
NZ_CP014784.1\|WP_061902560.1\|48009_49077_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|182805
NZ_CP014784.1\|WP_021699945.1\|40673_41432_-\|imidazole-glycerol-phosphate-synthase-subunit-HisF	unknown	unknown	gnl\|CDD\|234996
NZ_CP014784.1\|WP_061902554.1\|41443_42181_-\|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]imidazole-4--carboxamide-isomerase	unknown	unknown	gnl\|CDD\|179108
NZ_CP014784.1\|WP_061902549.1\|19240_20572_+\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829
NZ_CP014784.1\|WP_061902550.1\|20631_21315_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_CP014784.1\|WP_021699943.1\|14312_15068_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223904
NZ_CP014784.1\|WP_061902547.1\|16200_17922_+\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|226969
NZ_CP014784.1\|WP_061905592.1\|13409_14168_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223904
NZ_CP014784.1\|WP_061902551.1\|21352_22159_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014784.1\|WP_061902559.1\|45790_48013_+\|AsmA-family-protein	unknown	unknown	gnl\|CDD\|282957

Protein	Function_ID	Function_description	E-value
NZ_CP014784.1\|WP_061902548.1\|17924_19244_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	1.06102e-109
NZ_CP014784.1\|WP_061902556.1\|42476_43115_-\|imidazole-glycerol-phosphate-synthase-subunit-HisH	gnl\|CDD\|237290	PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional.	1.96281e-119
NZ_CP014784.1\|WP_043216328.1\|43115_43709_-\|imidazoleglycerol-phosphate-dehydratase-HisB	gnl\|CDD\|234873	PRK00951, hisB, imidazoleglycerol-phosphate dehydratase HisB.	2.18161e-131
NZ_CP014784.1\|WP_061902555.1\|42218_42476_-\|DUF2164-domain-containing-protein	gnl\|CDD\|378315	pfam09932, DUF2164, Uncharacterized conserved protein (DUF2164). This domain, found in various hypothetical prokaryotic proteins, has no known function.	9.31821e-22
NZ_CP014784.1\|WP_061902546.1\|15295_16030_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223904	COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms].	1.46832e-19
NZ_CP014784.1\|WP_021699955.1\|49073_49346_+\|oxidative-damage-protection-protein	gnl\|CDD\|180059	PRK05408, PRK05408, oxidative damage protection protein; Provisional.	9.01501e-58
NZ_CP014784.1\|WP_061902552.1\|22178_24014_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	6.60926e-148
NZ_CP014784.1\|WP_061902545.1\|12038_13352_+\|S41-family-peptidase	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	6.73041e-141
NZ_CP014784.1\|WP_061902557.1\|43855_44254_+\|acetyl-CoA-sensor-PanZ-family-protein	gnl\|CDD\|372195	pfam12568, DUF3749, Acetyltransferase (GNAT) domain. This domain family is found in bacteria, and is approximately 40 amino acids in length. The proteins in this family are acetyltransferases of the GNAT family.	5.51465e-36
NZ_CP014784.1\|WP_061902560.1\|48009_49077_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|182805	PRK10880, PRK10880, adenine DNA glycosylase.	8.18824e-157
NZ_CP014784.1\|WP_021699945.1\|40673_41432_-\|imidazole-glycerol-phosphate-synthase-subunit-HisF	gnl\|CDD\|234996	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional.	2.52785e-179
NZ_CP014784.1\|WP_061902554.1\|41443_42181_-\|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]imidazole-4--carboxamide-isomerase	gnl\|CDD\|179108	PRK00748, PRK00748, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated.	7.13664e-144
NZ_CP014784.1\|WP_061902549.1\|19240_20572_+\|TolC-family-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	1.69108e-60
NZ_CP014784.1\|WP_061902558.1\|44316_45531_-\|sterol-desaturase-family-protein	gnl\|CDD\|377224	pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.	4.28293e-26
NZ_CP014784.1\|WP_021699943.1\|14312_15068_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223904	COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms].	4.51856e-26
NZ_CP014784.1\|WP_061902547.1\|16200_17922_+\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|226969	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only].	0
NZ_CP014784.1\|WP_061902550.1\|20631_21315_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.45729e-11
NZ_CP014784.1\|WP_061905592.1\|13409_14168_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223904	COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms].	5.52106e-22
NZ_CP014784.1\|WP_061902559.1\|45790_48013_+\|AsmA-family-protein	gnl\|CDD\|282957	pfam05170, AsmA, AsmA family. The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.	2.24147e-110

>NZ_CP014784.1|WP_061902552.1|22178_24014_-|tetratricopeptide-repeat-protein
MSANPLESPNLDVALLTALQFAEQAALEPMQLIAVAERLGLAGRPADVVRLYQTWLGHCSSSADYIVQFNLGVTLSQLEQLPAAEQAYRAAIQRKPDFTQAWFNLGAVIERQGRPDNALTIWQSMLDHPLVGPGLNHELYVMVLNAMGRLMEEVRQLQPAEQKLLASLQADPEQPKVIQHWVHLRQKQCEWPVFVPPQGLSRGDLLKATSPLAMLSASDDPGLQLATAMHFVVERVNQRVAQLAPSGGYVHPRIRIAFLSSDFCLHAVSLLTVELFELLDRERFEVYGFCWSREDGSALRARVKAAMDHFIPIGGLDDASAAQLIRQHEIDVLVDLQGLTSGARPNILAYRPAPLQLTYLGFPGPTGLPCVDYVIADRYLIPEDEKPFYSEKPLYLPVFQCSDRQRPVAPLPTRAECGLPDDRFVFCCFNNNYKFNEETFSCWMRILAAVPDSLFWLLADNQWSQANLIACAERHGVSADRLVFAPRVAPELYLARYTVADLFLDAYPFNGGTTANDALWMGLPVLTRSGRTFASRMAGALLTALELPELITENLADYEQRAIELARDPERLRGLRLRLQQGRETSLLFDMPRFVRSFEEGIDAAYTRVRQ
>NZ_CP014784.1|WP_061902551.1|21352_22159_-|hypothetical-protein
MPAEPIHLFHIAYSDATLKAMPAGFELLDNMAHERDDWREYWPIRRFLLEQTLDEEAWYGFFSPRFKEKTGLDALHVREFVQGAAANGADVCTFSPQPDMGAFFLNVFEQEDLFHPGFLDISQAFVRHAGFDVALRQLVMDSRQIVFSNYIVARPSFWRRWLALNERLFALCEQGEGELAEGLRRESSYPGSVPCKVFLMERLASLILTLEPNWRVRAYNTFDCAWSASRLNQFRLEAVLSDALKMAMREQGFAQYRDAFAAMRDKLR
>NZ_CP014784.1|WP_061902550.1|20631_21315_+|class-I-SAM-dependent-methyltransferase
MHPSAMENGKLFFDTYLKPLGQVTVADIGAQNVNGSLKDVCPENATYIGVDFVQGKGVDIIIDDPYKLPFEDGSLDAVVSSSCFEHSEFFWLLFNEIMRVLRPTGLFYLNAPSNGLFHRYPVDCWRFYPDSGNALANWANRCGYNTLMLESYTSYQSNGLWNDYVAVFLKDREHLPQHPQRILSSFQNYANGFIHGQDGILNQQEFPEDGMKLRIISETIAGRLRLK
>NZ_CP014784.1|WP_061902549.1|19240_20572_+|TolC-family-outer-membrane-protein
MTMRLSLLLLGLLLTQPVTAAESTPLALLEAYDNALYHDPTFQAATFDYQASQQEEAIGLAPLLPQLNASGRYGSTRQLSGRDLDGSNEDPRFTSTGLSLSARQVLYDRARAAYYAQAKARGELGESLYDDAFQELFPRVVETYFEVARQENELSLSRQQKIAIEGLVKQTRRLFEVGDGTITDIDEAQARLDLVKAQEIEAEARLQAALHALSGRTGVRVASIQAMGENLPGAAPLRSEEDLAFWQQQAHSAAPRMDARRDSVRVAEAELRAQKAGHYPQLALVGELNHSDRDDLADDFRRQSSSYLGLSLDVPLYAGGGVNAASRKSQYALSSAQAQLDDEARQLSEDIERNYLGVVSGYAKCKALQTAVRSNQRALESAEKGYQAGVRSTVDILNAQQTLFTARRDLLNSKLLMLQSLVELHARSGLMNRAVLQQVEALF
>NZ_CP014784.1|WP_061902548.1|17924_19244_+|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MTVAQNLPADIRDANRTARLGLWIIAIGLGGFLIWAALAPLAQGVAGSGTVVVAGERKTVQALAGGAVDDILVREGDQVKAGQLLIQLNTIQAQAQLEVALGQWFSARASEARLSSERHGLNNIDWPADLLSHQDDPRAKRNMELQNNLFETRRAELTSRQQIIENQTASLQEQLRAYEQIRNHLETQLDYQRKELDGLRQLAAEGYVPRNRLFEAERNSAQLSAQLTSGIADIGKTKQGIAESRLQSLQLQQSFRIEAESQLASTSAEASSLVERIKALEFEVDNAAIRAPVGGQVIDLSVHTEGGVIPAAQRLMDIVPEGSAWIIKAKFEPLVADRLKIGLPVNLRFSSLNSATLPVVDGKVLTVSGDQLLDEQTRLPYFAVEVEVGAEAVAKLRNHGLEVKPGMQAEVMVQTGERTFLKYLLSPLEKRIRGALKEE
>NZ_CP014784.1|WP_061902547.1|16200_17922_+|type-I-secretion-system-permease/ATPase
MRLRLDPARDIDAALLRYRSLFWVIALFSGVINLLTVVPAIYMMQVFDRVMASRNEMTLLLLTLLALGLFILSSLVEWIRGQVMIKMSVGIDLDLGERLFGVAFQKSLKEHNANPAQVLSDLNALRQFLTGSALISLLDLPWMPIFLIVTGLLHPWLGLFTLLGALILFGLAIWNEHATRQGLDEANQISVHSSKYVNSTLQNAEVIQAMGMLGNLQKRWAALQQRLIGAQTSASDKAARISTITRLVRTAWQSLAMGVAMLLILEGQITGGVMMAAGFLISKAMLPAEQAISSWKQLDSAKASYKRLCQLLDEFPRKVERMSLPAPTGAVRIERLVVNPPNSKRPAVNGIDLALNKGEVLAVIGPSASGKSSLARAMVGVWAPAYGSVRLDGAEIGQWDAEVLGPHLGYLPQDIELFDGTVAENIARFGQADSAQVIEAATLAGIHDMILRFPQGYDTPLGPGGLGLSGGQKQRIGLARALYGKPALVVLDEPNSNLDDAGEAALVAAIDALRKHGSTVVLVTHRPNVLAVVDKLLVLQDGTQKMFGPRDQVLKALFPPATPASASPSAQTS
>NZ_CP014784.1|WP_061902546.1|15295_16030_-|ABC-transporter-substrate-binding-protein
MLFPRLLTLFLLLVGTAQARAESLVLLTENLPPFNMAVSGGNFARDDGITGISAETMRLVCQRAGVECQQILRFPWERVYNQALNDAGYGLFSVARTAERETLFKWVGPIASEDWVLLARADSPIQLSSLEQAKQYRLGGYKGDAPTNKVVESGLDVQQSLYDKENPERLAKGQIDLWVTSSVAGQYLARQQGYQDFRVVLTFGRGDLYLALNQQTTDATVDKLRAALEQLRSEGALQGVMQKY
>NZ_CP014784.1|WP_021699943.1|14312_15068_-|ABC-transporter-substrate-binding-protein
MLKYLHKGLLCGLLLLAGGAHAELSDDYKVILLTENFPPFNMAIDEKNFARDDNIDGISADLVREVFKRAGIGYNLSLRFPWDRIYRLTLDKPNYGLFSTTYTDERKPLFKWVGPLAKSEWVLLAAPGSTIKVGSLEEAAKYKIGAYKNDAVSQHLESKGLKPDNSLRDQENVAKLMSGKIDLWATTDPVGRYIAKQEGASGLQVVLRFNSAELFLALNKETPDEVVERLQKALDELRNEGFVDEITSSYL
>NZ_CP014784.1|WP_061905592.1|13409_14168_-|ABC-transporter-substrate-binding-protein
MLKRLSMLLLGVGLLFSSVVRAELPADYKVVLLTENFPPYNMANNGKNYAREENLEGIAVEVVRETFKKAGIDYHMTLRFPWARIYKMALENANHAVFVAAKLPEREKLFKWVGPIGPDDWVMLARADSSISLISLEQAKSYRVGAYKGDAIDEHLRKQGLEPISSLRDQENAHKLQEGKIDLWATGDPAGRYLAKQEGITGLKTVLRFDSAQLYLALNPETPDEVVERLQKALDELRASGRVDQIFQSYVQ
>NZ_CP014784.1|WP_061902545.1|12038_13352_+|S41-family-peptidase
MQQFRRLTPLALALGLMLGSPTLLAAEAVEVPAVEAVNGKAPLPLEELRTFAEVMDRIKAAYVEPVDDKTLLENAIKGMLGNLDPHSAYLEPEAFAELQESTSGEFGGLGIEVGTEDGFIKVVSPIDDTPASKAGIQPGDLIVKIDGQPTKGLSLMEAVDKMRGKAGSKINLTLVREGGKPFDVELTRAVIKVKSVRSQLLEDGYGLIRISQFQVNTGEEVGKALAKLRKDNGKKLRGLVLDLRNNPGGVLQAAVEVADHFLKKGLIVYTEGRIANSELRFNADPADASEGVPLVVLINGGSASASEIVAGALQDHKRGVLMGTDSFGKGSVQTVLPLNNDRALKLTTALYFTPNGRSIQAQGIVPDIEVARAKLTREDGGELIKEADLAGHLGNGNGGADKPSGSKQQKAPRPQDDDYQLSQALNLLKGLNVTRGE
>NZ_CP014784.1|WP_021699945.1|40673_41432_-|imidazole-glycerol-phosphate-synthase-subunit-HisF
MALAKRIIPCLDVDNGRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRTVQDIRNLLNAGADKVSINTAAVFNPEFVGEAAARFGSQCIVVAIDAKKVAPGRWEIFTHGGRKPTGLDAVLWAKKMEDLGAGEILLTSMDQDGVKSGYDLGVTRAISETVGIPVIASGGVGNLEHLAAGILEGKADAVLAASIFHFGEYSVPEAKAYLASRGIVVR
>NZ_CP014784.1|WP_061902554.1|41443_42181_-|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]imidazole-4--carboxamide-isomerase
MLIIPAIDLKDGACVRLRQGRMEDSTVFSDDPVSMAAKWVEGGCRRLHLVDLNGAFEGQPVNGEVVTAIAKRYPNLPIQIGGGIRTLETIEHYVKAGVSYVIIGTKAVKEPEFVTEACKAFPGKVIVGLDAKDGFVATDGWAEVSSVQATDLAKRFEADGVSAIVYTDIAKDGMMQGCNVEATAALAAASRIPVIASGGIHNLSDIEKLLLARSPGIIGAITGRAIYEGTLDVAEAQAFCDSFKG
>NZ_CP014784.1|WP_061902555.1|42218_42476_-|DUF2164-domain-containing-protein
MSRGKKVALLELEGGQQQAALQVLKNFLEDRFELELGSFEVQEVLDLIGREIAPHYYNKAIADTQALLAERFASLESDLWALEKS
>NZ_CP014784.1|WP_061902556.1|42476_43115_-|imidazole-glycerol-phosphate-synthase-subunit-HisH
MQTVAVIDYGMGNLHSVAKALEHVGAGRVLVTSDAAVIREADRVVFPGVGAIRDCMAEIKRLGFDELVREVSQDRPFLGICVGMQALLERSEENGGVDCIGLFPGQVRFFGKDLHEDGEHLKVPHMGWNEVEQVVDHPLWHEIPDMGRFYFVHSYYIEAGNPAQVVGRGHYGKDFAAALAEGSKFAVQFHPEKSHTHGLQLLQNFVGWDGRW
>NZ_CP014784.1|WP_043216328.1|43115_43709_-|imidazoleglycerol-phosphate-dehydratase-HisB
MAERTASVERNTLETQIKVSINLDGTGKAKFDIGVPFLEHMLDQIARHGLIDLDIHCKGDLHIDDHHTVEDVGITLGQAFAKAVGDKKGMTRYGHSYVPLDEALSRVVIDFSGRPGLQMHVPFTRAVVGGFDVDLFQEFFQGFVNHAQVSLHIDNLRGTNTHHQIETVFKAFGRALRMAVELDPRMAGQMPSTKGCL
>NZ_CP014784.1|WP_061902557.1|43855_44254_+|acetyl-CoA-sensor-PanZ-family-protein
MPVLVETVSRPSAQDHTDLGKVYADAPDWLLAPYASVDALLADGIGSGQLIAGRFNDRLLGAALLQRGDTHWRLSHLCVRKVTRKRGVGRRILDEALRLAREAGKPLHLAAPRDHLESQALAARTGLPLDDL
>NZ_CP014784.1|WP_061902558.1|44316_45531_-|sterol-desaturase-family-protein
MNVAVLAVPLYILLILLELAYERWSGRHTYRLADAVTSIDTAVLRMLLEGPLRLLLVVPYAWLYEHARLWTLDPASPWTWLLGFVAVDFCFYWAHRSLHRYNLLWGAHQPHHSSEDFNLSTALRKGAFQTAFDWPFYLPLALLGLPLPLFLVLLGAQLVYQFWIHSQHVGRLGMLEWFMVTPSNHRVHHGQNDRYIDKNHGGVFIVWDRLFGTFADETEAVRYGVTTPVRTFDPLRLQFSWWRLLWADAVATRSWWDKLRLWWMPTGWRPADVRARPWPKMGAEKFDCPSQAGLRWYAFAQFVAINALTLVYLASVKQTGWLLPLLLGPLILFGCVSLGWLFEGRRALWRLEVLRLALLAAFALVWGLWLAPAQWLFGLGLAGLCAASLLWLVWLAARPQMAQA
>NZ_CP014784.1|WP_061902559.1|45790_48013_+|AsmA-family-protein
MKAFGKILGLVMLGLLLIVIGLGFALTHLFDPNDYKDEIQQLARDKANLELQLKGDIGWSLFPWLGLELTDATLASADSPDQPFANLRLLGLSVRVLPLLRREVQMSNIRVDGLDLTLQRDDKGRGNWEGVGQPAKREATPTATPAQPPAQSPVADEAAQPGQPLKLDIDSLTISNSRVDYQDAKSGQQFSAEGIELSTGAIREGADIPVKLLAFLGSNQPVLRAKTELQGLLRFDRTLKRYQLQDLKLAGEASGEPLNGKTLTFASQGQLLLDQSAQVAEWTGIKLSANQLRALGELKLRDLDKTAQLEGNLSLAQFNLREFLDGIGVVLPAMRDNTTLSRFEMSTRLAGTPTSINFNDLSLKLDDSTFSGNLALSDIAKQALRLQLKGDKLDLDRYLPPENKDANAGAARQNEVKQAVAAAGNSGTTPLPGAPTQQAWSSTPLLPLETLRKLDIEAAVGLGQLTLSKLPIEDARIALTAKGGLINLKELRGDLHGGEFAVRSQLDARPAIPLLTASKQIKRIPLEKLLEARGEKAPVRGLLDLNADVRTQGNSEKAWVDALNGNASFSLSDGVLVDANLEQQLCQGIATLNRKSLSGEPRGKDTPFEELHGNLKFTNGVASNPDLKARIPGLTVNGDGAVDLRVLGMDYRVGIVIEGDKTAMPDPACQVNERYVGLEWPLRCRGPLELGAKACRLDKDGLGKIAAKLAGNKLEQKIEEKLGDKVSPELKDALKGLFNR
>NZ_CP014784.1|WP_061902560.1|48009_49077_+|A/G-specific-adenine-glycosylase
MSPEQFNGAVLAWYDQQGRKNLPWQQGITPYRVWISEIMLQQTQVSTVLGYFDRFMEALPSVQALADAAEDEVLHLWTGLGYYTRARNLHKAAKLVVEQHGGEFPRSVEQLAELPGIGRSTAGAIASLSMGLRAPILDGNVKRVLARYQAQQGYPGEPKVAAQLWQLAEQLTPHERVNHYTQAMMDLGATLCTRSKPSCLLCPVREGCRAHLLGRETDFPEPKPRKALPQKRTLMPLLANAEGAILLYRRPSSGLWGGLWSLPELDDLDALRELARQHALHLDEPRELAGLTHTFSHFQLAIEPWLVRVEQAGGAVAEGDWLWYNLATPPRLGLAAPVKKLLKRAAQELNAGEAS
>NZ_CP014784.1|WP_021699955.1|49073_49346_+|oxidative-damage-protection-protein
MSRTVHCRKYNEQLPGLDRPPYPGAKGQDIYDNVSKKAWDEWQAHQTMLINERRLNMMNAEDRKFLQAEMDKFLSGEDYAKADGYVPPSA

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Crispr_ID: NZ_CP014784_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014784_4

2280038-2280122

Orphan

Consensus_repeat	Method
TGCCGTTCTGGCTGAGCGACGGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014784_4

>merge|NZ_CP014784|4|2280038-2280122|CRISPRCasFinder
TGCCGTTCTGGCTGAGCGACGGCACCCGCGAGGACATTCCCCTGACAACCAATGGCGAGCTGCCGTTCTGGCTGAGCGACGGCAC

>NZ_CP014784|4|4|2280038-2280122|CRISPRCasFinder
TGCCGTTCTGGCTGAGCGACGGCAC	CCGCGAGGACATTCCCCTGACAACCAATGGCGAGC
TGCCGTTCTGGCTGAGCGACGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014784.1\|WP_061904127.1\|2279108_2279288_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014784.1\|WP_167629404.1\|2276328_2277801_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014784.1\|WP_061904133.1\|2281512_2281716_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014784.1\|WP_061904125.1\|2277806_2278529_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014784.1\|WP_061904136.1\|2283453_2284140_-\|SOS-response-associated-peptidase-family-protein	unknown	unknown	gnl\|CDD\|182162
NZ_CP014784.1\|WP_061904123.1\|2275837_2276224_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014784.1\|WP_061904122.1\|2273576_2274095_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014784.1\|WP_061904134.1\|2281810_2282326_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014784.1\|WP_061904126.1\|2278546_2279116_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014784.1\|WP_061904138.1\|2284654_2285932_+\|translesion-error-prone-DNA-polymerase-V-subunit-UmuC	unknown	unknown	gnl\|CDD\|179607
NZ_CP014784.1\|WP_061904120.1\|2270544_2270850_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014784.1\|WP_061904137.1\|2284224_2284662_+\|peptidase-S24	unknown	unknown	gnl\|CDD\|182350
NZ_CP014784.1\|WP_082806433.1\|2274094_2275834_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014784.1\|WP_061904139.1\|2286360_2287671_+\|trigger-factor	unknown	unknown	gnl\|CDD\|234956
NZ_CP014784.1\|WP_061904132.1\|2281235_2281439_-\|carbon-storage-regulator	unknown	unknown	unknown
NZ_CP014784.1\|WP_061904131.1\|2280732_2281245_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014784.1\|WP_061904128.1\|2279310_2279877_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014784.1\|WP_156480522.1\|2280148_2280733_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014784.1\|WP_061904121.1\|2270960_2273534_+\|tape-measure-protein	unknown	unknown	gnl\|CDD\|131723
NZ_CP014784.1\|WP_061904135.1\|2282325_2282835_+\|DUF2514-family-protein	unknown	unknown	gnl\|CDD\|287666

Protein	Function_ID	Function_description	E-value
NZ_CP014784.1\|WP_061904135.1\|2282325_2282835_+\|DUF2514-family-protein	gnl\|CDD\|287666	pfam10721, DUF2514, Protein of unknown function (DUF2514). This family is conserved in bacteria and some viruses. The function is not known.	4.18693e-05
NZ_CP014784.1\|WP_061904136.1\|2283453_2284140_-\|SOS-response-associated-peptidase-family-protein	gnl\|CDD\|182162	PRK09951, PRK09951, hypothetical protein; Provisional.	2.73194e-70
NZ_CP014784.1\|WP_061904139.1\|2286360_2287671_+\|trigger-factor	gnl\|CDD\|234956	PRK01490, tig, trigger factor; Provisional.	0
NZ_CP014784.1\|WP_061904138.1\|2284654_2285932_+\|translesion-error-prone-DNA-polymerase-V-subunit-UmuC	gnl\|CDD\|179607	PRK03609, umuC, translesion error-prone DNA polymerase V subunit UmuC.	0
NZ_CP014784.1\|WP_061904121.1\|2270960_2273534_+\|tape-measure-protein	gnl\|CDD\|131723	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.	1.61781e-16
NZ_CP014784.1\|WP_061904137.1\|2284224_2284662_+\|peptidase-S24	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	5.45059e-28

>NZ_CP014784.1|WP_061904128.1|2279310_2279877_+|hypothetical-protein
MALVKFYKVTSLPSTLEPDSLYFVLNSGYTESYLTNAAGEAKAIGNSAMINALIADALSSLPSSGAPVLYAADIAARDALEPSLAQAVFVLVADATDDPTVNAGAAMYAWNPSTSTWIKVAEYESMDVTVTWASIVGGPSSTPAQIDSAVSASHTHANKATLDKLSESGGLLRFEGSPIPSEWASSNW
>NZ_CP014784.1|WP_061904127.1|2279108_2279288_+|hypothetical-protein
MDEGAYLATLEFTNSETAEVEREYLVSLQQQELVLVEQGSQGPPGPPGEGAAAWQQKDW
>NZ_CP014784.1|WP_061904126.1|2278546_2279116_+|hypothetical-protein
MQPARQDLPVVPGTTYRDTVRLMQPDYAYKLITQISGAPAVLSVPLHGLAGDWPVWVRGVSGLPAINREPPNALPHRAKRLDANALEVNAVSAEGARPEGGQLIYRLPVDISAAEVRMRFSGLQGDDLVLEIGSGLERPAPGTVTRALTPEQTVLLVGDWRYTFEVEFADGTITRYFEGGPAKAGACHG
>NZ_CP014784.1|WP_061904125.1|2277806_2278529_+|hypothetical-protein
MQRFVNNWSTTLLAPLLAGDSELSVSAAMAAKVAACLLEPGDYLDLTISPEGAAPEIIRITGAGTGVLAIGGRGREGTATPSSWPAGTVVRCTVTAGFLHGLQSAPSVGGGSRSVVVISLGELVVPADAGLLIGGGYATDSSQVTLPVPDSDQVLTIDLQLYQTAESPGDPAYELQLTLPGGVVGEVQVPSATASATSATLTLSNITTLTFCRLLISNIGGTLQFDLAAYSPSIAASIPS
>NZ_CP014784.1|WP_167629404.1|2276328_2277801_+|hypothetical-protein
MTLNLFGPGDTHHIKVGGIEPITTAEAALAPPGGQWWAGEALLSGTMLYGKSLDGWIYQGPGYSRWWVKIQGVSVGTSATTGTFRVRRFGVFGGEPDTRNFNFTLSAGRCPPAEAARIGADLGGSNVGYLRLHAVSETGRTAVLALVTRNTGPSNDRRPRAYRFFLARVSGDGESLAVSMSELYGIDDIAPQPAPQPDRGFVRLKASVAEETGREPYLQNGEIVAYDVTYTLDSDSGFEVTTTPTAFTVPGIYTDERRVMLQVRLSGETPVPVYATAKYTCTVPWPTLQWVTSRERTRREWLTGGVGTLEEAKISLTGSVTVTAQVEFSVGDWVDQVVVTCSSSVDTGEYVFGSTMPTEAVDNSYVATGLAGTMSLVVPNLPLQYLGPVLFGGFAWGSDTRQPGFNTSVGVPGQLPAVRNYLLRLDLLSNNLVAVSGRIDTGPQSYINAIAAGSAVPYSGAYPAGGLSAFGSYNPVTGDVEIASTPVNWI
>NZ_CP014784.1|WP_061904123.1|2275837_2276224_+|hypothetical-protein
MSSLGDERRALGRALVQQRTGRSTVDALNRVVGRQKAKKTLKLLDPRGALVAQRGRSDYTDTRPNQAGGTGVAWPLVESDYDARTYHASGLASSDGLFMIPAIDKLVLTDAEGRTGEVRLAEPPAPTP
>NZ_CP014784.1|WP_082806433.1|2274094_2275834_+|hypothetical-protein
MQVGIDALNTSALNDSSGAGSPPTPQLIPTGVAFTWRDQVLINGFDVSSVITGEVEVDRERGAAGIADFALFMSEDPNPQEWVGRQVIINYLSTGDGASTSARLFTGSIESTTWDPLTRQLACACSDRLQQRVERLSVAQVDALTPCYWSADVFEPASGRSRWEYAEERLSTLRASLDCDAYGALRLTSWYAGPVEYVFGPDTTVYQSVAVSYADLGTLTNVVEIEADYRYPRLRQNVTTFVWDHPGNDGSSGIRGFCSWRPESTELPDVEMIRSATSSAGLVMVNATFDRLPPSDGNPCGDGNPWINTYTELLLGAVWGGARRWVQSVTEQYQLRVEAPSSIADVGEVFAREGSAVEIESDRAERWEQGLREQSDGGLVVGGYETEDEDLRAEERRQLFLRCLLNQAATTIVRAHNATELSWDVPTSLVMELDLGQTLRLADQGVVGVGRCSRLQHRLDKQAGAALTTITISVMRGGGAVNDPLTPPPPPAEPPPGGGGVGPSPGLATQLGGRDDSGTYDDELDGFSGNYDNFDNSYERFPRRFSLTAPEIPSAMVDEQIVPVGQTYRIAIPNDPLEL
>NZ_CP014784.1|WP_061904122.1|2273576_2274095_+|hypothetical-protein
MSLPRVMLGGVEIVVHAGVPEQADAPVVAETIIRMGQGGGVKLTHFRKAGGTISGQGWMPPGMDGLDYGQPLELRLTKQQSITQASHLGITLTSTPRPDMAPWAQALVGRDWVPTPMSLSGLAATVVPVPGAKMYSVQWMPRYWVFAQRPVQQMNPGDPSRPHSWSIPWEEV
>NZ_CP014784.1|WP_061904121.1|2270960_2273534_+|tape-measure-protein
MSDVELRLTADLDQALKQVRGFSKEYAGLVGQIEKPLRQTNFARGLERELESSGKAIQAAKARLSELQRELINTDNPTERLKESFKAATRELQRLERVEAAQVGQLSRVRAELRGAGVDTTRLAAEQRRLSAEMAKGLSAGRADAAARGLRERAAALKQQSIAQRQANLEAARATFGITQARAAKQELVSLRQQFELLKSRGGLTTQELAMAQRQLKHRIAETKRELKSLQGGFSMDIGAAAGGGGKGGAAAAAAVAAAAAAGAAATQVAQGADEVGRLDTRLKLATKSQEEFNRAQFELDRIADETQGDISGLVGLYSRLQRPLRDVGMGQKETLETIEAVSLAMKIGGTSAEESSAAIQQLSQALASGTLRGDEFNSVLEQSDRVAGALADEFGVTIGQLREMASQGQITTEAIVKAFGNQLPKLRQEFAQFSPELTTAISRAGTELKRYWGRQAKESGVTDYFASVINDYAKGVNQVAQAEQQSYDSRAESLRSHNAEMVDLQKQASVARKAALDEQVRNTETALKKQVEAERKAASELAKAKQAQLETQQRYKAALAGLNSSGQGADPSFGQASALKVGARQALENGDVEEAKRQAQAALEILQQLAQAGENTYGFAGVIKELQSIEQSADGKKVDEAQAKLDKAKEAAAQTKAALEELKDIKVQPTLDADAQQALLDQMARLADQAKIIMTIPVTYQQGDFDPVSGDYILQQPNLEPPGFADGGWTGAGGKYQPAGLVHRGEHVQPQEVVREPGALPFLEQIRRNGFRNTVSSLRDRLAAGLPGFAEGGLVGPRALPAMPPIPQNLLQGGGGSESLGTLVLQLGGQQFSVQAPRSTAEELSRTARKLGGTRR
>NZ_CP014784.1|WP_061904120.1|2270544_2270850_+|hypothetical-protein
MSDAAGKAIVSLGGKDFIVRELSVAQLRSMMGSRAEYELLRHELFEDIYLTDLPSFVNAALADIEALLPSQIEELIAKVKEMNPHFFQLLARLKGMAAPVQ
>NZ_CP014784.1|WP_156480522.1|2280148_2280733_+|hypothetical-protein
MAEKKPVKKLPGGLGEMESGDKVHSDVIDPWACQPIGVPVPVFTHITGVSVPPTDRSYRYIKLSASDSYNSGVLTSESVSGSAPLVLASAVVSLSGSPIDGQTVQLINTERRALRAGSPGTLQDDAMQGHHHVQSISRATTAGTTASIARGGSIVNNLTVGDASPSDDGTNGTPRTANETRAKNIGADYYMRIL
>NZ_CP014784.1|WP_061904131.1|2280732_2281245_+|hypothetical-protein
MPYAAEGCISHDPIDGGVEITEAQYAEGLAAMLEGRQISIAGGFHVAEPPAPAEPDHEPEIPVATRLLQWLRQECDRRLALLRQDYPDSEVLSWDKQEAEARAGGGPLVAALAAARGLDEQELIRRILAKADTFAVISGTIIGQRQALEDQVRAGALEVEWPEVGLPAQS
>NZ_CP014784.1|WP_061904132.1|2281235_2281439_-|carbon-storage-regulator
MGLTVTRTPGQQIQLKIEPGTTAEQLMEELNAGIMITLIEYRSGGARINIQAPACLSIGRAEARPHD
>NZ_CP014784.1|WP_061904133.1|2281512_2281716_-|hypothetical-protein
MGNKLVRQGLANRVARQFAAAQILDAEAAAEAFAEEALTAEERLAAHAELRRIAGALLAPSPEDHPG
>NZ_CP014784.1|WP_061904134.1|2281810_2282326_+|hypothetical-protein
MTPRELRNGPVSEALLLLPAKMTSPQAELMLLAIGLQESELKHRRQHGNGPARSLWQGEQGGGMVAGLLGFHNQDVQDLARGLCAVRGVPAQPRAVWEAIEHDDVLAAGLARLLLYTDPAKLPGLGDEEGAWQLYLRTWRPGAFTRGTATKRAELRQKWAKYYAQALEVVR
>NZ_CP014784.1|WP_061904135.1|2282325_2282835_+|DUF2514-family-protein
MAWVRLVPLWAWLAVVLGLWTVVEELRLANLRGELVAEQAAHSGYRAEVAERDRRAAVAALAETKRRQVAAEGVEKDAQGKLGQAQGDAARAGDALQRLQQRYAETEQRARQCGDAITAQLSAAAEAGARMRAELLGRLGAAAGFYAAVADDSRVRGQACEASYDSLMQ
>NZ_CP014784.1|WP_061904136.1|2283453_2284140_-|SOS-response-associated-peptidase-family-protein
MCGRFAQYRGMRDYLRELESEQEVIGLVGDEPIDRYNVAPGTQVQLLHSSTGGLVVAAVRWGWMPQWAKGKMPPPINARGEKVAEGNYFRQIWPHRALVAADGWYEWVKDETDPKNKQPYFIRLRDRAPCFFAAIGQFPEDGGESRVGDGFVIITADAEGGMVDVHDRRPVVLAPDLAREWLDPATTLLRAEQLVLHQGRQAEDFEWYPVDRAVGNVRNQGADLITPR
>NZ_CP014784.1|WP_061904137.1|2284224_2284662_+|peptidase-S24
MDSVTILGPVAPSSVTIPFFLPSVPAGFPSPAQDHLEQRISLDELFGLHRPQIYLVRVAGNSLQGLGIHDADLVLVDKALTPRRGDVVVACVNGEPLLKILGGDKHQVILLSANPQYPPRYIMESEEFQIWGVYIGLCRVGRASG
>NZ_CP014784.1|WP_061904138.1|2284654_2285932_+|translesion-error-prone-DNA-polymerase-V-subunit-UmuC
MAERAFALIDCNSFYCSCERVFRPELARTPIVVLSNNDGCVVSRTAEAKALGVKMGEPWHQIRKRYEAAGGMAFSSNYALYGDMSERVMTIIEGLVPALEVYSIDEAFAELTGIRGDLVPLGREIRAQVLAGTGIPTGVGIGPSKTLAKLANYAAKRWQRQTGGVVDIRDPERRDKLLRAVEVSEVWGVGRRLTEKLGAMGIQTAWDLATADAWTLRKQFNVVLEKTARELRGIACLELDGVAPPKQEICCSRSFGSRLQHLEPIREAVATYAARACEKLRQQGSVCKRVRVSIRTGMFNPDEPKFARGVLCELPHPSDDTRLITQAALVGLDQIYRPGYSYAKAQVLLLDLYQRGEFTDDLFAATPPAAAEKVMAVLDAVNAKWGRGTLRPGIVPVAPEWGMKREMLSQSYTTRLDQLWQVQAK
>NZ_CP014784.1|WP_061904139.1|2286360_2287671_+|trigger-factor
MQVSVESTSALERRMTIGVPAERIETEVTKRLQQTARRAKVPGFRPGKVPMNVIRQRYEDAARQEALGDLIQATFYEAIVEQKLNPAGAPAVEPKVFEKGKDLEYVATFEVFPEIKLAGFDGIAIERLQADVTDADLDNMLEILRKQNTRFEAVERAAENGDQLNIDFVGKIDGEAFAGGSAKGTPLVLGSGRMIPGFEEALVGVKAGEERVINPTFPADYQNLDLAGKTAEFTVTVNSVSAPQLPELNDDFFALFGIKEGGLEGFRTEVRKNMERELRQAIKSKVKNQVMEGLLAANPVEVPKALIGNEVNRLRVQAVQQFGGNIKPDQLPAELFEEQAKRRVVLGLIVAEVVKQGELKADEARVRELIEEMASAYQEPQQVVAWYYKNDQQLNEVRSVVLEEQVVDTVLQKAKVTDKAVSYEEAVKPAEAPQAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014784_2	2.1\|37345\|25\|NZ_CP014784\|CRISPRCasFinder	37345-37369	25	NZ_CP042262	Litoreibacter sp. LN3S51 plasmid unnamed1, complete sequence	9794-9818	2	0.92
NZ_CP014784_1	1.1\|37174\|25\|NZ_CP014784\|CRISPRCasFinder	37174-37198	25	NZ_AP014688	Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6d, complete sequence	115898-115922	4	0.84
NZ_CP014784_4	4.1\|2280063\|35\|NZ_CP014784\|CRISPRCasFinder	2280063-2280097	35	NZ_CP036405	Komagataeibacter saccharivorans strain JH1 plasmid p221732, complete sequence	134433-134467	9	0.743

1. spacer 2.1|37345|25|NZ_CP014784|CRISPRCasFinder matches to NZ_CP042262 (Litoreibacter sp. LN3S51 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.92

gaccagttgcggaatggtcagcgcc	CRISPR spacer
gaccagttgcggaatgtccagcgcc	Protospacer
**************** .*******

2. spacer 1.1|37174|25|NZ_CP014784|CRISPRCasFinder matches to NZ_AP014688 (Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6d, complete sequence) position: , mismatch: 4, identity: 0.84

agcgacctgggtcgaaaccagagca	CRISPR spacer
gacgacctgggtcgaaaccagttca	Protospacer
..*******************  **

3. spacer 4.1|2280063|35|NZ_CP014784|CRISPRCasFinder matches to NZ_CP036405 (Komagataeibacter saccharivorans strain JH1 plasmid p221732, complete sequence) position: , mismatch: 9, identity: 0.743

ccgcgaggacattcccctgacaaccaatggcgagc	CRISPR spacer
cattgaggacatcgccctgacaaccaatggtatcc	Protospacer
*  .********. ****************..  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2216612 : 2276224

Pseudomonas_phage(51.28%)

head,protease,portal,holin,terminase,integrase,tRNA

attL 2208341:2208358|attR 2267789:2267806

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2208341:2208358	attL	NA	NA	NA	NA
WP_061904067.1\|2216612_2217965_-\|protease	membrane protease subunit, stomatin/prohibitin	A0A0F6WCV7	Sinorhizobium_phage	1.0e-42	28.4
WP_061904068.1\|2218067_2218790_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_061904069.1\|2218937_2219429_-	peptidyl-prolyl cis-trans isomerase	A0A076FI46	Aureococcus_anophage	1.3e-14	34.8
WP_061904070.1\|2219602_2221270_+\|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	A0A222YZ70	Escherichia_phage	2.2e-204	62.2
WP_061904071.1\|2221270_2222656_+\|tRNA	cysteine--tRNA ligase	A0A2K9V966	Bandra_megavirus	1.8e-45	35.3
WP_061904072.1\|2222715_2224584_-	DEAD/DEAH box helicase	H9C0J4	Bdellovibrio_phage	2.5e-10	29.8
WP_061904073.1\|2224649_2225783_-	class C beta-lactamase	NA	NA	NA	NA
WP_061904074.1\|2225793_2226231_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_061904075.1\|2226365_2227256_+	DMT family transporter	NA	NA	NA	NA
WP_061904076.1\|2227259_2227598_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_061904077.1\|2227751_2229626_+	EAL domain-containing protein	G3MA91	Bacillus_virus	4.0e-24	34.0
WP_061904078.1\|2229629_2230823_-	hypothetical protein	NA	NA	NA	NA
WP_061904079.1\|2230980_2232822_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_061904080.1\|2233203_2234286_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.1e-05	26.2
WP_061904081.1\|2234296_2235394_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.6e-15	25.1
WP_061904082.1\|2235390_2236257_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_061904083.1\|2236267_2237068_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_061904084.1\|2237078_2237351_+	DUF2160 domain-containing protein	NA	NA	NA	NA
WP_061904085.1\|2237402_2239142_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_021699595.1\|2239201_2240056_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	9.9e-31	35.6
WP_061904086.1\|2240814_2242041_+\|integrase	integrase arm-type DNA-binding domain-containing protein	Q5QF66	Pseudomonas_virus	4.3e-128	60.1
WP_061904087.1\|2242034_2242256_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_082806431.1\|2242272_2242689_-	DUF4406 domain-containing protein	A0A0U4IBL4	Pseudomonas_phage	2.1e-26	51.0
WP_061904089.1\|2243125_2243746_-	hypothetical protein	NA	NA	NA	NA
WP_061904090.1\|2243742_2243964_-	hypothetical protein	A0A1B0VN94	Pseudomonas_phage	6.5e-19	74.5
WP_156480516.1\|2244059_2244704_+	hypothetical protein	NA	NA	NA	NA
WP_156480517.1\|2244878_2245538_+	hypothetical protein	NA	NA	NA	NA
WP_061904092.1\|2245867_2246089_+	hypothetical protein	NA	NA	NA	NA
WP_061904093.1\|2246130_2247960_-	DNA cytosine methyltransferase	A0A1I9KFW0	Aeromonas_phage	1.3e-88	36.3
WP_061904094.1\|2247956_2249057_-	site-specific DNA-methyltransferase	A0A1B0VM49	Pseudomonas_phage	9.2e-122	61.9
WP_061904095.1\|2249064_2249892_-	SAM-dependent DNA methyltransferase	A0A2K9V411	Faecalibacterium_phage	2.9e-27	30.5
WP_061904096.1\|2249938_2250343_-	hypothetical protein	NA	NA	NA	NA
WP_061904097.1\|2250339_2250609_-	hypothetical protein	NA	NA	NA	NA
WP_061904098.1\|2250979_2251186_-	hypothetical protein	A0A0H5ARH3	Pseudomonas_phage	2.5e-12	50.0
WP_061904099.1\|2251666_2251975_+	DUF1654 domain-containing protein	A0A0S2SYC9	Pseudomonas_phage	8.2e-28	63.1
WP_167629401.1\|2251986_2252490_-	hypothetical protein	NA	NA	NA	NA
WP_061904100.1\|2252446_2252770_-	STAS-like domain-containing protein	A0A2H4J4X6	uncultured_Caudovirales_phage	2.5e-11	37.1
WP_156480519.1\|2252741_2253836_-	ATP-binding protein	NA	NA	NA	NA
WP_061904102.1\|2253883_2254705_-	LexA family transcriptional regulator	H2BD63	Pseudomonas_phage	5.1e-69	53.2
WP_061904103.1\|2254793_2254994_+	helix-turn-helix domain-containing protein	H2BD64	Pseudomonas_phage	1.0e-18	81.4
WP_061904104.1\|2255126_2255549_+	Rha family transcriptional regulator	A0A2D1GNM7	Pseudomonas_phage	1.5e-27	49.3
WP_167629403.1\|2255550_2256312_+	Pyocin large subunit	Q858D3	Salmonella_phage	5.1e-47	50.0
WP_061904105.1\|2256292_2257120_+	ATP-binding protein	A0A059VK34	Pseudomonas_phage	1.0e-53	46.0
WP_061904106.1\|2257112_2257478_+	hypothetical protein	NA	NA	NA	NA
WP_061904107.1\|2257467_2258463_+\|integrase	site-specific integrase	A0A2D1GND4	Pseudomonas_phage	1.2e-64	42.0
WP_061904108.1\|2258544_2259081_+	hypothetical protein	H2BDI9	Pseudomonas_virus	1.7e-57	59.9
WP_061904109.1\|2259323_2260070_+	hypothetical protein	NA	NA	NA	NA
WP_061904110.1\|2260203_2260527_+\|holin	phage holin, lambda family	A0A0U4III7	Pseudomonas_phage	1.7e-28	58.8
WP_156480520.1\|2260496_2261315_+	hypothetical protein	A0A1W6JTE1	Pseudomonas_phage	4.3e-60	49.4
WP_061904112.1\|2261426_2261972_+\|terminase	terminase small subunit	A0A1B0Z033	Pseudomonas_phage	3.0e-65	71.7
WP_061904113.1\|2261943_2263893_+\|terminase	phage terminase large subunit family protein	A0A1B0Z2K0	Pseudomonas_phage	4.4e-276	70.1
WP_061904114.1\|2263892_2264099_+	hypothetical protein	B7SYD5	Stenotrophomonas_phage	5.3e-07	44.4
WP_061904115.1\|2264100_2265642_+\|portal	phage portal protein	Q75QM9	Wolbachia_phage	3.8e-73	36.3
WP_061904116.1\|2265649_2267605_+\|head	Mu-like prophage major head subunit gpT family protein	A0A2I7QRU0	Vibrio_phage	3.0e-83	32.9
WP_061904117.1\|2267679_2268030_+	DUF2190 family protein	NA	NA	NA	NA
2267789:2267806	attR	NA	NA	NA	NA
WP_156480521.1\|2268033_2268351_+	hypothetical protein	A0A1W6JT71	Pseudomonas_phage	1.2e-13	41.3
WP_061904118.1\|2268347_2268818_+	hypothetical protein	A0A1W6JT75	Pseudomonas_phage	9.6e-28	46.4
WP_061904119.1\|2268828_2269866_+	hypothetical protein	A0A1W6JT83	Pseudomonas_phage	2.2e-24	42.5
WP_082806432.1\|2269982_2270489_+	DUF4124 domain-containing protein	NA	NA	NA	NA
WP_061904120.1\|2270544_2270850_+	hypothetical protein	A0A0M3VI87	Ralstonia_phage	7.4e-05	34.5
WP_061904121.1\|2270960_2273534_+	tape measure protein	A0A1B0YZV6	Pseudomonas_phage	1.5e-135	38.4
WP_061904122.1\|2273576_2274095_+	hypothetical protein	NA	NA	NA	NA
WP_082806433.1\|2274094_2275834_+	hypothetical protein	A0A1W6JTA3	Pseudomonas_phage	2.0e-139	49.0
WP_061904123.1\|2275837_2276224_+	hypothetical protein	A0A1B0YZV1	Pseudomonas_phage	2.7e-12	35.7

DBSCAN-SWA_2

2279310 : 2285932

Pseudomonas_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061904128.1\|2279310_2279877_+	hypothetical protein	A0A1W6JT84	Pseudomonas_phage	3.7e-66	68.1
WP_061904129.1\|2279880_2280156_+	hypothetical protein	A0A1W6JTD4	Pseudomonas_phage	7.8e-14	63.9
WP_156480522.1\|2280148_2280733_+	hypothetical protein	Q8HA60	Vibrio_phage	5.9e-11	34.1
WP_061904131.1\|2280732_2281245_+	hypothetical protein	NA	NA	NA	NA
WP_061904132.1\|2281235_2281439_-	carbon storage regulator	NA	NA	NA	NA
WP_061904133.1\|2281512_2281716_-	hypothetical protein	NA	NA	NA	NA
WP_061904134.1\|2281810_2282326_+	hypothetical protein	C8ZKR3	Pseudomonas_phage	4.4e-34	46.4
WP_061904135.1\|2282325_2282835_+	DUF2514 family protein	NA	NA	NA	NA
WP_061904136.1\|2283453_2284140_-	SOS response-associated peptidase family protein	A0A2H4J991	uncultured_Caudovirales_phage	2.9e-73	60.4
WP_061904137.1\|2284224_2284662_+	peptidase S24	A0A1W6JNS2	Morganella_phage	1.3e-18	42.9
WP_061904138.1\|2284654_2285932_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.6e-117	52.0

DBSCAN-SWA_3

2851417 : 2862152

uncultured_Caudovirales_phage(60.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061904530.1\|2851417_2852086_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	8.4e-94	85.2
WP_061904531.1\|2852176_2852569_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.3e-51	77.5
WP_061904532.1\|2852568_2852928_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	9.8e-33	58.3
WP_061904533.1\|2852927_2853227_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	7.9e-28	67.7
WP_061904534.1\|2853223_2853559_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.7e-42	76.6
WP_061904535.1\|2853555_2854530_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	1.4e-145	78.6
WP_061904536.1\|2854533_2855910_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_061904537.1\|2855981_2857262_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.6e-99	55.6
WP_061904538.1\|2857404_2857776_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.5e-09	37.8
WP_061904539.1\|2857772_2859095_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.8e-79	39.1
WP_061904540.1\|2859104_2859731_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_167629418.1\|2859746_2862152_-	DNA translocase FtsK 4TM domain-containing protein	A0A218M9A2	Mycobacterium_phage	1.5e-87	52.2

DBSCAN-SWA_4

2921184 : 2931575

Liberibacter_phage(66.67%)

integrase

attL 2927625:2927640|attR 2945966:2945981

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061904574.1\|2921184_2924235_-	HsdR family type I site-specific deoxyribonuclease	A0A220A398	Liberibacter_phage	0.0e+00	67.6
WP_082806453.1\|2924250_2925402_-	restriction endonuclease subunit S	A0A240FAT6	Liberibacter_phage	7.2e-61	62.0
WP_061904575.1\|2925398_2926913_-	SAM-dependent DNA methyltransferase	A0A220A2U5	Liberibacter_phage	8.5e-203	77.8
WP_061904576.1\|2926905_2927946_-	virulence RhuM family protein	Q9JMN3	Wolbachia_phage	5.7e-73	47.5
2927625:2927640	attL	NA	NA	NA	NA
WP_061904577.1\|2927942_2929442_-	SAM-dependent DNA methyltransferase	A0A220A2U4	Liberibacter_phage	4.5e-220	74.3
WP_061904578.1\|2930165_2931575_+\|integrase	site-specific integrase	A0A2H4IYX8	uncultured_Caudovirales_phage	1.4e-53	34.9
2945966:2945981	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP014784

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection