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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP014947 Pseudomonas koreensis strain D26 chromosome, complete genome 5 crisprs cas3,csa3,DEDDh,PD-DExK,DinG,RT 1 1 12 0

Results visualization

1. NZ_CP014947
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014947_1 320818-320915 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014947_2 1580269-1580368 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014947_3 2551411-2551505 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014947_4 2778537-2778630 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014947_5 3029079-3029181 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP014947_1 1.1|320841|52|NZ_CP014947|CRISPRCasFinder 320841-320892 52 NZ_CP014947.1 452516-452567 1 0.981

1. spacer 1.1|320841|52|NZ_CP014947|CRISPRCasFinder matches to position: 452516-452567, mismatch: 1, identity: 0.981

tgcagcccgggacgctctgcgtcccaaagcggacgcagagcgtccattgagg	CRISPR spacer
tgcagcccgggacgctccgcgtcccaaagcggacgcagagcgtccattgagg	Protospacer
*****************.**********************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP014947_5 5.1|3029110|41|NZ_CP014947|CRISPRCasFinder 3029110-3029150 41 NZ_CP005961 Pseudomonas mandelii JR-1 plasmid unnamed, complete sequence 187544-187584 12 0.707

1. spacer 5.1|3029110|41|NZ_CP014947|CRISPRCasFinder matches to NZ_CP005961 (Pseudomonas mandelii JR-1 plasmid unnamed, complete sequence) position: , mismatch: 12, identity: 0.707

ttcaactgtgggagctggcttgccagcgatggcggccttgt	CRISPR spacer
gaatcctgtgggagcgggcttgcccgcgatggcggtgtgtc	Protospacer
     ********** ******** **********. *  .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 484671 : 495134 10 uncultured_Caudovirales_phage(75.0%) transposase NA
DBSCAN-SWA_2 512133 : 518815 12 uncultured_Caudovirales_phage(87.5%) NA NA
DBSCAN-SWA_3 1892108 : 1997092 104 Pseudomonas_phage(40.82%) plate,tRNA,tail,holin,lysis,protease NA
DBSCAN-SWA_4 2866676 : 2917283 72 uncultured_Caudovirales_phage(54.0%) integrase,tRNA,tail,holin,capsid attL 2869820:2869877|attR 2931251:2931308
DBSCAN-SWA_5 3478853 : 3511344 40 uncultured_Caudovirales_phage(66.67%) transposase,integrase,tail,lysis attL 3478623:3478682|attR 3503349:3503455
DBSCAN-SWA_6 4377228 : 4383466 8 uncultured_Caudovirales_phage(83.33%) tRNA NA
DBSCAN-SWA_7 4605621 : 4653390 72 Pseudomonas_phage(46.94%) capsid,integrase,tail,holin attL 4595455:4595488|attR 4662717:4662750
DBSCAN-SWA_8 4907993 : 4932203 31 Pseudomonas_phage(36.84%) transposase,integrase,head,tail,capsid attL 4907790:4907811|attR 4920471:4920492
DBSCAN-SWA_9 4938083 : 4955212 18 Burkholderia_virus(35.71%) tail,plate NA
DBSCAN-SWA_10 5968646 : 5973180 6 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_11 6185255 : 6234923 43 Tupanvirus(14.29%) holin,protease NA
DBSCAN-SWA_12 6270695 : 6276813 9 uncultured_Caudovirales_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage