CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP014950	Mycobacteroides abscessus strain FLAC003 chromosome, complete genome	1 crisprs	cas3,csa3,DinG,DEDDh,cas4,WYL	0	1	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014950_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014950_1

883100-883187

Orphan

Consensus_repeat	Method
CGGCTGCTACAACGGCGTGTGCGGTGGCTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014950_1

>merge|NZ_CP014950|1|883100-883187|CRISPRCasFinder
CGGCTGCTACAACGGCGTGTGCGGTGGCTGGAACCCCGGCCAGGGCGGTTGGGGCCACGGCTGCTACAACGGCGTGTGCGGTGGCTGG

>NZ_CP014950|1|1|883100-883187|CRISPRCasFinder
CGGCTGCTACAACGGCGTGTGCGGTGGCTGG	AACCCCGGCCAGGGCGGTTGGGGCCA
CGGCTGCTACAACGGCGTGTGCGGTGGCTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014950.1\|WP_062878662.1\|883223_884144_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274648
NZ_CP014950.1\|WP_062878660.1\|877642_880045_+\|cation-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319795
NZ_CP014950.1\|WP_005063556.1\|880960_881176_+\|antitoxin	unknown	unknown	gnl\|CDD\|379416
NZ_CP014950.1\|WP_062878665.1\|891189_891936_-\|peroxide-stress-protein-YaaA	unknown	unknown	gnl\|CDD\|234999
NZ_CP014950.1\|WP_079461478.1\|873903_874992_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224983
NZ_CP014950.1\|WP_005073408.1\|886906_887305_+\|PaaI-family-thioesterase	unknown	unknown	gnl\|CDD\|239527
NZ_CP014950.1\|WP_074249796.1\|884202_884799_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225767
NZ_CP014950.1\|WP_052614714.1\|892869_894075_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|179663
NZ_CP014950.1\|WP_052614873.1\|876847_877525_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP014950.1\|WP_062878659.1\|875750_876851_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293841
NZ_CP014950.1\|WP_062878658.1\|873342_873924_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014950.1\|WP_005063562.1\|875016_875748_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|236115
NZ_CP014950.1\|WP_062878666.1\|892060_892843_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319911
NZ_CP014950.1\|WP_005073409.1\|887380_888901_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143434
NZ_CP014950.1\|WP_062878663.1\|888881_889316_+\|DUF779-domain-containing-protein	unknown	unknown	gnl\|CDD\|377532
NZ_CP014950.1\|WP_062878664.1\|889409_891200_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223021
NZ_CP014950.1\|WP_005073405.1\|884749_886762_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340868
NZ_CP014950.1\|WP_062878661.1\|881198_882335_+\|lipase	unknown	unknown	gnl\|CDD\|367570
NZ_CP014950.1\|WP_050543520.1\|880072_880906_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225852
NZ_CP014950.1\|WP_005073393.1\|882371_882815_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|378454

Protein	Function_ID	Function_description	E-value
NZ_CP014950.1\|WP_062878662.1\|883223_884144_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274648	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes one such subfamily, exemplified by Rv1855c from Mycobacterium tuberculosis. [Unknown function, Enzymes of unknown specificity].	3.87433e-72
NZ_CP014950.1\|WP_062878660.1\|877642_880045_+\|cation-translocating-P-type-ATPase	gnl\|CDD\|319795	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7. This subfamily contains P-type ATPase transporters of unknown function, similar to Streptococcus pneumoniae Exp7. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids. They are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle. A general characteristic of P-type ATPases is a bundle of transmembrane helices which make up the transport path, and three domains on the cytoplasmic side of the membrane. Members include pumps that transport various light metal ions, such as H(+), Na(+), K(+), Ca(2+), and Mg(2+), pumps that transport indispensable trace elements, such as Zn(2+) and Cu(2+), pumps that remove toxic heavy metal ions, such as Cd(2+), and pumps such as aminophospholipid translocases which transport phosphatidylserine and phosphatidylethanolamine.	0
NZ_CP014950.1\|WP_005063556.1\|880960_881176_+\|antitoxin	gnl\|CDD\|379416	pfam14013, MT0933_antitox, MT0933-like antitoxin protein. This family of proteins contains the MT0933 protein, which has been identified as an antitoxin to /protein MT0934. This family of proteins is found in bacteria. Proteins in this family are typically between 61 and 90 amino acids in length.	4.21227e-08
NZ_CP014950.1\|WP_062878665.1\|891189_891936_-\|peroxide-stress-protein-YaaA	gnl\|CDD\|234999	PRK02101, PRK02101, peroxide stress protein YaaA.	7.50266e-71
NZ_CP014950.1\|WP_079461478.1\|873903_874992_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224983	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism].	2.20542e-34
NZ_CP014950.1\|WP_005073408.1\|886906_887305_+\|PaaI-family-thioesterase	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	5.48332e-32
NZ_CP014950.1\|WP_074249796.1\|884202_884799_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|225767	COG3226, COG3226, Uncharacterized protein conserved in bacteria [Function unknown].	3.82621e-07
NZ_CP014950.1\|WP_052614714.1\|892869_894075_-\|DNA-polymerase-IV	gnl\|CDD\|179663	PRK03858, PRK03858, DNA polymerase IV; Validated.	0
NZ_CP014950.1\|WP_052614873.1\|876847_877525_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.10088e-21
NZ_CP014950.1\|WP_062878659.1\|875750_876851_+\|hypothetical-protein	gnl\|CDD\|293841	cd16283, RomA-like_MBL-fold, Enterobacter cloacae RomA and related proteins; MBL-fold metallo hydrolase domain. Derepression of the romA-ramA locus results in a multidrug-resistance phenotype. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	5.38009e-68
NZ_CP014950.1\|WP_005063562.1\|875016_875748_+\|enoyl-CoA-hydratase	gnl\|CDD\|236115	PRK07854, PRK07854, enoyl-CoA hydratase; Provisional.	5.5316e-136
NZ_CP014950.1\|WP_062878666.1\|892060_892843_+\|VOC-family-protein	gnl\|CDD\|319911	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a streptomycin resistance protein.	1.02682e-38
NZ_CP014950.1\|WP_005073409.1\|887380_888901_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143434	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.	0
NZ_CP014950.1\|WP_062878663.1\|888881_889316_+\|DUF779-domain-containing-protein	gnl\|CDD\|377532	pfam05610, DUF779, Protein of unknown function (DUF779). This family consists of several bacterial proteins of unknown function.	7.48298e-70
NZ_CP014950.1\|WP_062878664.1\|889409_891200_+\|hypothetical-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	7.53643e-05
NZ_CP014950.1\|WP_005073405.1\|884749_886762_-\|MFS-transporter	gnl\|CDD\|340868	cd06179, MFS_TRI12_like, Fungal trichothecene efflux pump (TRI12) of the Major Facilitator Superfamily of transporters. This family includes Fusarium sporotrichioides trichothecene efflux pump (TRI12), which may play a role in F. sporotrichioides self-protection against trichothecenes. TRI12 belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.16499e-66
NZ_CP014950.1\|WP_062878661.1\|881198_882335_+\|lipase	gnl\|CDD\|367570	pfam03583, LIP, Secretory lipase. These lipases are expressed and secreted during the infection cycle of these pathogens. In particular, C. albicans has a large number of different lipases, possibly reflecting broad lipolytic activity, which may contribute to the persistence and virulence of C. albicans in human tissue.	5.33317e-18
NZ_CP014950.1\|WP_050543520.1\|880072_880906_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225852	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism].	7.42976e-49
NZ_CP014950.1\|WP_005073393.1\|882371_882815_+\|SRPBCC-family-protein	gnl\|CDD\|378454	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport. This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily.	1.37079e-13

>NZ_CP014950.1|WP_005073393.1|882371_882815_+|SRPBCC-family-protein
MAAKLNSSIDVPLPPEEAWAHASDLRRFDEWLSVHTAWRSALPETLEKGTVIDSIVCVKGMYNRVKWTLQKYDPPTGLFLDGQGRGGVKVKLRVTISPKGSGSVVDFNLHLGGPAMFGPIGAVVAAALRSDIDASLAKFVQVFAATP
>NZ_CP014950.1|WP_062878661.1|881198_882335_+|lipase
MLVLIMAACARVEAEGVASQPPSPPPGEVLSDVPLSLAPDLDAIADGHLIRYMSTSGATGTPTEVTGVVFAPKGEPPQAGWPIVSVGHGTTGLDDECAVSRAPDLRGYIWLVRNLSKRGWVVAITDYEGLGVPGPHPYLEPRSEGFNVIDAARAAVSLIPGASTKWAAIGASQGGQATWAASELAGDYASELEFVGSANLSPAADLTDMARHVGDGRYHWSQLSMMPTLLTGLSVTVPELRPENFLHGSFQDIPRDKALLLGCHNGLDPARSAAISRLRAKDFHGTSPADPIVFAAALKRIALPLGPASGPMFVYAGGADRLIEAGWIHAAVRRACALGDTVQEVVSPGKGHVDPEGERLGVQWIADRFAGLPAPSNC
>NZ_CP014950.1|WP_005063556.1|880960_881176_+|antitoxin
MADFKGLIDKLKSLLAGNKDKVNEAVDKVGDTIDSKTGGKYSAVVDKVQDAAKSAVEKVEGAAAPKDGDAQ
>NZ_CP014950.1|WP_050543520.1|880072_880906_-|class-I-SAM-dependent-methyltransferase
MLVRVTDPVKITLTGAPETMLATLYGRAQDATSPHSVLHDHYAAEAVARIDYDFSKTKIKGTQAIGVALRARQLDDWTSEFLTAHREATVLHLACGLDTRVFRINPSETVRWVDVDYPDVIALRRALLPCRDGDYRMIGSSVSEATWLDSIPADRPTLAVFEGLTMYLTEAEGQSLIRRITGRFPSGQLAFDCYGSIGIKLQKLVPAVRNAGATLHWGIDDPGQIEALHPGLRCVSDLRSTDVAGEEHLPLSGRIQMKVISHLPALRDIGRIMRFSF
>NZ_CP014950.1|WP_062878660.1|877642_880045_+|cation-translocating-P-type-ATPase
MATIEGLTISGLTAAEVAERVAQGKTNDVPSRAARSVSDIVRANVFTRINAILGVLLIIVLSTGSIINGAFGLLIIANSAVGIIQELRAKQTLDKLAIVGQTRPLVRRDGVATALAPNEVVLDDIIELGPGDQIVVDGEVIEESALEIDESLLTGEADAIEKTIGSQVLSGSFVVAGSGAYRAAKVGREAYAAKLAEEASKFTLVHSELRNGINKILQFITYLLLPAGALIIYTQLFTTDDSWQESVLRMVGALVPMVPEGLVLMTSIAFAVGVIRLGRRQCLVQELPAIEGLARVDTVCADKTGTLTENGMRLADVRFPNRDGDEDALAVLAQLAADDPRPNASIAAIAEAYDTPPGWETTAIAPFSSAKKWSGASYGEHGNWVIGAPDVLLDPADPIATAAEEIGARGLRVLLLASAELSVDDVHAPGAVTPRALVVLEQKIRPDARETLDYFASQHVSIKVISGDNAVSVSAVAQTLGLTGAAVDARTLPTDTDKLAATLADATTFGRVRPDQKRAMVKALQSHGHTVAMTGDGVNDVLALKDADIGVAMGAGSSASRAVAQIVLLDNKFATLPYVVAEGRRVIGNIERVSNLFLTKTVYSVLLALTVGLAGLGSKIFHYGAVPFPFQPIHVTIAAWFTIGIPAFILSLAPNNERAQTGFVRRVMLSAIPSGLTVGIATFLSYLLARQILHVSGNSTQASTAALITELVAAVWVLAVVARPYQWWRVVLVALSGLGYVAIFAIPLARKAFMLDPGNLAVTGPALGIGIAAAAVIEAVWWLQGKWSGQPRRFWATGDD
>NZ_CP014950.1|WP_052614873.1|876847_877525_-|class-I-SAM-dependent-methyltransferase
MTSNELPDWDATYQGKGELFQGEPPWNIGEPQPELAALIDAGKFHGTVLDVGCGHAETSLRLAALGHTTVGLDLSPTAIEAARAAAADRGLTNATFEVADITDFSGYDGRFNTIVDSTLFHSIPVEAREAYLQSISRAAAPDASYFVLVFAVGAFPPGIGPNAVTEDELRAAVEPHWAIDELSSAYIHSNIPEVIPGANFEMPVFHKDEKGRNKQPAFLLQAHKR
>NZ_CP014950.1|WP_062878659.1|875750_876851_+|hypothetical-protein
MRALWVGAGAAIASTWIGRALRDVPQTLGASKVRIAEVAKGSPQYRGGTFHNAEPARQFSPDAETTTVVWDVLTRRSVGTPKGQVPLAVPEFAGPPADLAATWFGHSSVLVEIDGYRVLTDPVWSDRCSPSRVVGPHRQHPVPVELSALPALDAVVISHDHYDHLDMDSIIALTRSQNAVFVVPLGVGAHLRGWGVSPARVIELDWDQSHQLGKLTLTCTQARHFSGRSIARNTTLWASWAFAGPKHKVFFGGDTGYTKAFKVIGDTYGPFDLTLLPVGAYNTSWADIHMNPEEAVQTHLDLATAQAPLLPIHWATFNLALHPWAEPIERVLAAAEEQGVTVVAPRPGQRADARQPAAPDDWWRLS
>NZ_CP014950.1|WP_005063562.1|875016_875748_+|enoyl-CoA-hydratase
MIGVTSDGPVTTIELQRPERRNAVTYELALAFAEEVKKAAETARAIVVTGQGTSFCAGADLSSGAPDPDKFADAWQHSIKSVDAADIPVIAAVNGPAIGAGVMLAMVADLRVVSETARFQFPVAKYGIALDNWSIRRLTSLVGYGRARAMLLAAEPLDAQTALQTGMANRIGELADAQAWAAELAGFAPLALKHAKRVLNDDGAFEDQWPEHKELFDKAWGSQDIIEAQVARIQKRPPNFQGA
>NZ_CP014950.1|WP_079461478.1|873903_874992_-|NAD(P)/FAD-dependent-oxidoreductase
MTTVAVIGGGQAGIAAGYFLRRRGLEPLSRRQPADAPGHGFVILDHSPGPGGAWQFRWPTLTLDNTNRIYQLPGLPFDEMGTIRASTAMPRYFGEYEDRYALDVRRPVHVRAVRPARGGFTIDTSVGEFPVDGLINATGTWDKPFVPFVPGAGTFRGRQLHTHDYQRPEEFTGQHVLVVGGGISAVQLLIEIAGIDSVTTSWVTRREPVFVTDLTVDRLRAAVAGVDERSRRGEPQRSVVSATGLPWTAETAEAARRGVLTRRPMFSRITPTGVIWPDGSALEVDVILWCTGFRHALDHLAPLHLRNGRGGITMTGRLLTQVAGQPAIHLLGYGSSASTIGANRASRAAVVELMNYLEGRTA
>NZ_CP014950.1|WP_062878658.1|873342_873924_+|hypothetical-protein
MCAALGVGLLSGGAAVVHADPAFPDLSGFAVVPPDGFFVTNENSSVRSIHFSTPDGIGCMFRASPNMTPTSRQRLSCDGAVPGIPGDAPNAPNVPGIGGASANVPGLGGVNIPGVGTCPMGTVAQKGDGAFEISKGAWSCGTKPEAPLLNVGQKLTYGNVTCAVGAGSVTACQVVTGDQKHGFVLQPSGSTSF
>NZ_CP014950.1|WP_062878662.1|883223_884144_-|LLM-class-flavin-dependent-oxidoreductase
MRFSIWGQTNQSWADLLDIAQYADDGTWRAFYAADHFMSHADTAEERTDFHEATAIFAALAAATSRIRLAPLVLSMTFRHPAVLANWAATVDHVSQGRFTLGLGAGWQENEHQRYGLELGKPGARVDRFSEGLQVITGLLNEPATTVDGQYYRLAEGICEPKPLQRPLPILIGATQPRMLALTARYAQEWNQWSSPGTFREVSGRLDAAAEKIGRDPATIWRSTQARVIVTDGPQSEARAAETAAASPIPVLYGTAERIAEQMAPWTQEGVDEVILPDHLLGSGSARRDAYDALAQALRPLSNGTG
>NZ_CP014950.1|WP_074249796.1|884202_884799_+|TetR-family-transcriptional-regulator
MEEQPRGRRAEVLAAAIEVAGTMGIGGLTYRSVDAAANVPSGTTSNHFRTRDALLLGAILEIEKLRRAFWRALVTEINPTTVSDLVGIGTAYANGAVGAMSTRVRAYMALLMEGWSHPELRDPLQRGRDAQIPRTLHLMCKVDPKTPQLHAEIFQDYLTGIIYQQLANPVADFNPRPGIEALLTALVTPPQTPRAAQR
>NZ_CP014950.1|WP_005073405.1|884749_886762_-|MFS-transporter
MISVQRRNLIFVAVLLGMLLAALDGTIVATALPTVVADLGDAGHQSWVVTSYLLASTVATAVMGKFGDLFGRRTVFITCIVIFAGGSLLCGMAGSMAMLVGARAIQGLGSGGLMVTATALIGEIIPMRERGRYQGILGAVFGVTTVIGPLLGGLFTDHLGWRWAFYINLPISVVVIMVAAGAIPALAKATRPVIDYWGIVLIGLGASALTLATSWGGTTYPWSSPVIIGLFASSIAAIGTFVWVESRVPEPILPPRLFRDPVFTICCVLSFVVGFAMLGVMTYLPTFMQFVNGVSATVSGLRTLPMVAGMLITSTGTGTLVGRTGRYKRYPVAGTAIMAIALVLLSRMDDSTPFVLQSLYLFVLGVGIGASMQVLTLIVQNTARFDDLGVATSGVTFFRTIGSSFGAAIFGSLFSNFLTRELSSVNTPPEATQSPQALHALPHDAAVPVIHAYADSLDLVFLCAAPVAAVGFVLALFLKEVPLRGADTSLAVDMGEGFGMPNSVSPDKLLEIAIGNAMRGFPHVGLRKLREHAGVSMPIAPLWALVQANRFLRATGSAEVSRIAQWYRIPPEIVDPAFNELVANGYALRTNDHIWLTDSGREEVDKISEAINQYLIERLSRTPDFEDRADREQIQAALERISRRIVTDTDWRENPIAALPAASGAASPAR
>NZ_CP014950.1|WP_005073408.1|886906_887305_+|PaaI-family-thioesterase
MTSEHLPTDQFPGFLGIESVSFDDGRVTAELPIRGEHFAPNGFVHAAVIVGLADTLCGYGCLASLPEGASGFTTVELKTNFLGAAREGKLTAAAVPVHRGRSTQLWDATVTSCDGRTVAVFRCTQLVLWPRG
>NZ_CP014950.1|WP_005073409.1|887380_888901_+|aldehyde-dehydrogenase-family-protein
MAKYAAPGTEGSAVTFAPRYENFIGGEWVAPADGQYFENASPIDGKVFTQVARGTAPDIEKALDAAHAAADAWGNTSAAERSNALLRIADRMEQHIERLAVAETWDNGKPIRESLNADIPLAIDHFRYFAGVLRAQEGSISEIDHDTVAYHFHEPLGVVGQIIPWNFPLLMAVWKLAPALAAGNCVVLKPAEQTPASILVLMELIADLLPSGTVNVVNGFGVEAGKPLASSPRIAKIAFTGETTTGRLIMQYATENIIPVTLELGGKSPNIFMPDVMAADDAFLDKALEGFTMFALNQGEVCTCPSRALVHASIYDEFIARAITRVEAIVGGDPLDEDTMIGAQASNDQYEKILSYIDIGRQEGAQVLTGGDARKVSEYPDGAYIQPTVFAGTNNMRIFQEEIFGPVLSVAKFDSLDEALKIANDTLYGLGAGVWSRDMTNAYRLGRGIKAGRVWTNCYHQYPAHAAFGGYKKSGIGRENHKMMLDHYQQTKNILVSYSPDAAGFF
>NZ_CP014950.1|WP_062878663.1|888881_889316_+|DUF779-domain-containing-protein
MPRASSDEGSPEESPTLINRVELTPAAAELLASLVAKHGPVMFHQSGGCCDGSAPMCYPRGEFRVGASDVLLGEVSRDTPFWMSADQFEYWSHTHLTVDVVPGRGSGFSLEAPEGVRFLIRSRLFTDDEVLALANQPVRTGADG
>NZ_CP014950.1|WP_062878664.1|889409_891200_+|hypothetical-protein
MHVGIRTVAVAAVCGLCVGAGVDARAVRQNLSIAGAPTTRSVSSQAVSLASFSDLLAAAAPQNDAAAQMNSVSGGAVSSTDLIGTVAKLLTTPNITQSAVTPGINTAAVDTVDPPSSEPADPPTGQPTDPPAADEPAPPTNFPGERPAFGTPSYFAQLAFAVFHVVALPITVPVQFFLGSAEGVPTVIAAAINDLSGLLGQIPGLSPQRPTEPQPQQIAQSSSPLQKLAAAETGPTTDPEPPAEPLPTNFPGPRPAFGTPSYFAQLAFAVLHVLALPITVPVQAIIGKTEGVPSVIVAALNDLSSLLGQVPKPSAPVTDTKTTPQDSTSQQADKAAPTLDSASEKPEAATSGADAKTSKIERNEHEGKTADKAAEAPKAEHETKPGAASEETPKTDPAKEVVESKVDPAKVVESKTDPTKAVEPKADPTKVVEPKVDPAKAVEPKTDPAKAVEPKADAAAEPAKPESSKAEVAKPVTAKPETKAQPAKPESAGPIKVTRDSLKSTPGETGTTGGTKTTEGSKGSVTDSKTPAASTDTKVHDGLKPAVGAKPDKPADKPSTEKSSSEKSGSSSEGNSHSSESKSHSSEGKSHSGSKD
>NZ_CP014950.1|WP_062878665.1|891189_891936_-|peroxide-stress-protein-YaaA
MIVLLPPSETKHEGGDGPPLRLNELATPTLNPVREALVDELVALAADPDACRQALGISASQDAEIQRNAELRISPTMPALHRYTGVLYDNLDVTSLRGASAARARARLAVGSALFGLLRADDPVPAYRLSASSKLPGKPTLAARWRPVLEPVLAELAAGELVVDLRSGSYAGLGRLPHAVTVDCLTEHPDGRRTVITHFNKAHKGKLARILAGSRAEPNDAASVATVARRAGLHVERDGNTLTIVVSP
>NZ_CP014950.1|WP_062878666.1|892060_892843_+|VOC-family-protein
MPTRDETPLGAPAWIDLASSDLEKSKAFYSALFGWTLQEAGPEYGGYINAHKDGKAVAGMITNNPEWNAPDAWTTYFATKDIDATLQKAVAQGGTNCLPPMEVPQLGYMALFADPAGAMVGLWQPLAHKGFQLVGEGGAPVWHELNTREYDRAVDFYTTVLGWNTKIEGDSADFRYACAQHDGAPIAGVNDASVGQWALPEGVPAHWAVYFGTDDTDAGAAKATELGGVVLAPAQDTPYGRMALIRDTTGAAFWLCSVDS
>NZ_CP014950.1|WP_052614714.1|892869_894075_-|DNA-polymerase-IV
MTGTASILHADLDSFYASVEQRDTPALRDRPVIVGGGVVLAASYEAKHCGVRTAMGGRQALRLCPHAVVVPPRFDAYSAASKLVFEVFRDTTPLVEPLSIDEAFLDVSGLQRISGAPSDIAAALRLEVRRRAGLPITVGIARTKFLAKVASRQGKPDGLLVVEPHEELSFLRPLPVQALWGVGSVTAEKLRVYGIRTVADVADLGESTLASMIGRAMGHQLHCLANNIDPRRVDGGRRRRSIGAQCALGRGPRADSEIDAITTQLMERIARRMRGTGRSCRTVVLRLRFGDYTRATRSRTVPRPTTSTERLLSVARELVKDARPLIKERGITLIGFSVSNFDPCGAAQLELPFSDAAENTSALDSTLDGLRDRFGTRSVTRANLLHGGGREEWGIPTFEDL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014950_1	1.1\|883131\|26\|NZ_CP014950\|CRISPRCasFinder	883131-883156	26	NZ_CP049908	Hymenobacter sp. HDW8 plasmid p_unnamed1, complete sequence	6463-6488	5	0.808
NZ_CP014950_1	1.1\|883131\|26\|NZ_CP014950\|CRISPRCasFinder	883131-883156	26	NZ_CP049908	Hymenobacter sp. HDW8 plasmid p_unnamed1, complete sequence	213898-213923	5	0.808
NZ_CP014950_1	1.1\|883131\|26\|NZ_CP014950\|CRISPRCasFinder	883131-883156	26	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	669429-669454	5	0.808

1. spacer 1.1|883131|26|NZ_CP014950|CRISPRCasFinder matches to NZ_CP049908 (Hymenobacter sp. HDW8 plasmid p_unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

aaccccggccagggcggttggggcca	CRISPR spacer
caccccggccagggcggcgggggcgg	Protospacer
 ****************. ***** .

2. spacer 1.1|883131|26|NZ_CP014950|CRISPRCasFinder matches to NZ_CP049908 (Hymenobacter sp. HDW8 plasmid p_unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

aaccccggccagggcggttggggcca	CRISPR spacer
caccccggccagggcggcgggggcgg	Protospacer
 ****************. ***** .

3. spacer 1.1|883131|26|NZ_CP014950|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 5, identity: 0.808

aaccccggccagggcggttggggcca	CRISPR spacer
tggcgcggccagggcggttgaggcca	Protospacer
 . * ***************.*****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1706443 : 1711857

Gordonia_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062878828.1\|1706443_1707466_-	acyltransferase	A9YX16	Burkholderia_phage	3.3e-25	29.4
WP_062878829.1\|1707559_1708342_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_158514644.1\|1708316_1708973_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_079625334.1\|1709343_1710075_+	hypothetical protein	A0A068F4L5	Mycobacterium_phage	1.2e-61	54.4
WP_062878831.1\|1710061_1710718_-	hypothetical protein	A0A159B6J8	Gordonia_phage	3.4e-15	39.9
WP_052539692.1\|1710885_1711188_+	helix-turn-helix transcriptional regulator	A0A159B6K1	Gordonia_phage	9.5e-13	58.5
WP_062878832.1\|1711184_1711484_+	hypothetical protein	A0A220NS49	Mycobacterium_phage	7.7e-07	35.8
WP_145916418.1\|1711584_1711857_+	hypothetical protein	A0A1C9EHV5	Gordonia_phage	1.7e-05	32.5

DBSCAN-SWA_2

1715396 : 1765309

Mycobacterium_phage(77.27%)

portal,capsid,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062878838.1\|1715396_1716026_+	DNA cytosine methyltransferase	G1D079	Mycobacterium_virus	9.0e-82	69.0
WP_062879545.1\|1716477_1717095_+	hypothetical protein	G1D0U2	Mycobacterium_virus	1.3e-19	32.7
WP_062878839.1\|1717234_1717849_+	site-specific DNA-methyltransferase	A0A0F7LB76	uncultured_marine_virus	2.9e-40	44.2
WP_145916419.1\|1717994_1718414_+	hypothetical protein	NA	NA	NA	NA
WP_062878841.1\|1718533_1718785_+	hypothetical protein	NA	NA	NA	NA
WP_062878842.1\|1718785_1719361_+	HNH endonuclease	A0A2K9VH78	Gordonia_phage	1.6e-48	53.4
WP_145916420.1\|1719360_1720308_+	hypothetical protein	A0A1P8DU74	Mycobacterium_phage	1.8e-70	58.3
WP_062878843.1\|1721622_1721862_+	hypothetical protein	A0A0K1LU13	Mycobacterium_phage	7.5e-13	61.2
WP_158514645.1\|1722116_1722389_+	HIT domain-containing protein	I3WWW3	Mycobacterium_virus	8.2e-24	63.3
WP_062878844.1\|1723072_1723474_+	hypothetical protein	NA	NA	NA	NA
WP_062878845.1\|1723470_1723842_+	hypothetical protein	A0A0K2FND8	Mycobacterium_phage	6.9e-05	33.3
WP_062878846.1\|1724165_1724414_+	WhiB family transcriptional regulator	A0A097EWF7	Mycobacterium_phage	2.4e-14	50.0
WP_062878847.1\|1724413_1724728_+	WhiB family transcriptional regulator	A0A1B0XUI6	Freshwater_phage	5.2e-14	50.0
WP_062878848.1\|1724766_1724967_+	hypothetical protein	NA	NA	NA	NA
WP_145916422.1\|1725803_1726109_+	hypothetical protein	NA	NA	NA	NA
WP_062878850.1\|1726362_1726557_+	hypothetical protein	NA	NA	NA	NA
WP_062878851.1\|1726557_1727235_+	hypothetical protein	M4WA13	Mycobacterium_phage	3.0e-67	55.0
WP_062878852.1\|1727269_1727527_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_062878853.1\|1727608_1727869_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2P1N333	Gordonia_phage	6.0e-16	51.2
WP_158514646.1\|1728135_1728276_+	hypothetical protein	NA	NA	NA	NA
WP_062878854.1\|1728265_1728562_+	hypothetical protein	NA	NA	NA	NA
WP_062878856.1\|1728943_1729288_+	hypothetical protein	NA	NA	NA	NA
WP_079764281.1\|1729574_1729790_+	hypothetical protein	NA	NA	NA	NA
WP_062878857.1\|1729906_1730089_+	hypothetical protein	NA	NA	NA	NA
WP_005110289.1\|1730209_1730491_-	DUF732 domain-containing protein	NA	NA	NA	NA
WP_062878858.1\|1730620_1731883_+	hypothetical protein	G8I6V8	Mycobacterium_virus	6.1e-69	72.0
WP_062878859.1\|1731888_1732710_+	hypothetical protein	A0A2D1GAR3	Mycobacterium_phage	9.0e-82	55.0
WP_079764327.1\|1732718_1733417_+	hypothetical protein	G1FG81	Mycobacterium_phage	2.7e-87	70.0
WP_062878861.1\|1733416_1733662_+	hypothetical protein	NA	NA	NA	NA
WP_005110295.1\|1733661_1734078_+	hypothetical protein	A0A068F2M6	Mycobacterium_phage	6.3e-23	50.4
WP_062878863.1\|1734341_1734617_+	hypothetical protein	B5U5D9	Mycobacterium_virus	1.3e-08	42.0
WP_079764328.1\|1734672_1735245_+	hypothetical protein	A0A2P1JRF0	Mycobacterium_phage	4.5e-48	48.1
WP_016342244.1\|1735643_1736069_+	hypothetical protein	A0A076G833	Mycobacterium_phage	1.2e-50	68.5
WP_016342245.1\|1736046_1737828_+	hypothetical protein	A0A076GDP6	Mycobacterium_phage	1.6e-280	77.2
WP_062878865.1\|1737839_1739216_+\|portal	phage portal protein	A0A1I9SBW7	Mycobacterium_phage	2.4e-175	70.2
WP_062878866.1\|1739279_1739822_+	hypothetical protein	A0A2R4AQA8	Mycobacterium_phage	4.9e-28	46.9
WP_016342250.1\|1739878_1740787_+\|capsid	phage major capsid protein	A0A221J736	Mycobacterium_phage	4.4e-122	76.9
WP_062878867.1\|1741279_1741507_+	hypothetical protein	G8I4C3	Mycobacterium_phage	6.7e-11	53.2
WP_062878868.1\|1741506_1741773_+	hypothetical protein	A0A068F3C1	Mycobacterium_phage	8.9e-15	50.0
WP_062878869.1\|1741772_1742150_+	hypothetical protein	NA	NA	NA	NA
WP_005110310.1\|1742216_1742804_+	hypothetical protein	A0A068F8K4	Mycobacterium_phage	1.6e-69	67.2
WP_016342254.1\|1742897_1743164_+	hypothetical protein	A0A068F4G7	Mycobacterium_phage	2.9e-13	44.7
WP_005067420.1\|1743280_1743592_+	hypothetical protein	A0A068F4G7	Mycobacterium_phage	4.0e-14	43.7
WP_062878870.1\|1743602_1747616_+\|tail	phage tail tape measure protein	A0A068F1L4	Mycobacterium_phage	7.6e-275	55.3
WP_062878871.1\|1747619_1748729_+	hypothetical protein	A0A068F3C3	Mycobacterium_phage	2.0e-156	68.4
WP_005110314.1\|1748731_1750528_+	hypothetical protein	A0A068F4H3	Mycobacterium_phage	2.4e-236	63.2
WP_074338289.1\|1750542_1751061_+	hypothetical protein	A0A068F2D2	Mycobacterium_phage	8.0e-36	48.4
WP_005067426.1\|1751053_1752139_+	hypothetical protein	A0A068F8L3	Mycobacterium_phage	1.4e-151	67.8
WP_062878872.1\|1752138_1756254_+	serine hydrolase	A0A0K1LLJ4	Mycobacterium_phage	1.6e-150	40.5
WP_052539617.1\|1756264_1756663_+	hypothetical protein	Q19Y14	Mycobacterium_phage	1.8e-27	50.4
WP_079764282.1\|1756665_1758063_+	hypothetical protein	G3MDN1	Mycobacterium_phage	2.8e-30	45.8
WP_005067432.1\|1758078_1758510_+	hypothetical protein	A0A2P1JR64	Mycobacterium_phage	2.1e-58	80.4
WP_062879548.1\|1758766_1760170_+	hypothetical protein	G1FGA6	Mycobacterium_phage	4.0e-146	61.2
WP_005110325.1\|1760166_1760583_+	hypothetical protein	A0A2D2W368	Mycobacterium_phage	3.5e-05	35.3
WP_062879549.1\|1760633_1761548_+	hypothetical protein	A0A0F6WEW3	Mycobacterium_phage	8.0e-55	41.8
WP_032667946.1\|1761596_1761818_+	hypothetical protein	NA	NA	NA	NA
WP_079764329.1\|1761814_1763011_+	hypothetical protein	S5W0N6	Mycobacterium_phage	7.9e-119	57.2
WP_032693052.1\|1763734_1763977_+	hypothetical protein	A0A222ZLP9	Mycobacterium_phage	7.4e-08	40.3
WP_062878874.1\|1764012_1764375_+	hypothetical protein	A0A222ZMV8	Mycobacterium_phage	3.2e-23	53.8
WP_062878875.1\|1764413_1764695_+	hypothetical protein	NA	NA	NA	NA
WP_062878876.1\|1764802_1765309_-	ankyrin repeat domain-containing protein	R4TPX0	Phaeocystis_globosa_virus	7.2e-05	36.8

DBSCAN-SWA_3

3976856 : 3986350

Burkholderia_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005077959.1\|3976856_3977981_-	acyltransferase	A9YX16	Burkholderia_phage	1.2e-20	29.0
WP_016887507.1\|3977977_3979246_-	glycosyltransferase	A0A1L3KK54	Shahe_endorna-like_virus	3.3e-06	40.3
WP_012296730.1\|3979295_3980102_-	macrocin O-methyltransferase	A0A2R8FDY2	Brazilian_cedratvirus	4.9e-56	52.6
WP_074249704.1\|3980312_3981005_-	class I SAM-dependent methyltransferase	Q98VI8	Paramecium_bursaria_Chlorella_virus	4.9e-12	30.2
WP_005077962.1\|3981237_3982368_-	acyltransferase	A9YX16	Burkholderia_phage	1.8e-16	27.5
WP_052523005.1\|3982535_3983597_-	NAD-dependent epimerase/dehydratase family protein	A0A0E3IB24	Synechococcus_phage	5.3e-18	25.2
WP_032692260.1\|3983760_3985020_-	glycosyltransferase	A0A1L3KK54	Shahe_endorna-like_virus	1.6e-05	39.2
WP_016887306.1\|3985483_3986350_+	glucose-1-phosphate thymidylyltransferase RfbA	H9NC64	Sphingomonas_phage	2.8e-89	57.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage