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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011106 Legionella pneumophila strain L10-023 isolate Ulm plasmid unnamed, complete sequence 0 crisprs WYL,DinG 0 0 0 0
NZ_CP011105 Legionella pneumophila strain L10-023 isolate Ulm chromosome, complete genome 1 crisprs cas1,cas2,cas4,cas3,DEDDh,PD-DExK,WYL,csa3 0 3 6 0

Results visualization

1. NZ_CP011105
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011105_1 178428-181189 TypeII NA
38 spacers
cas4,cas2,cas1,cas9

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP011105_1 1.6|178821|30|NZ_CP011105|CRISPRCasFinder,CRT 178821-178850 30 MK250029 Prevotella phage Lak-C1, complete genome 228333-228362 6 0.8
NZ_CP011105_1 1.6|178821|30|NZ_CP011105|CRISPRCasFinder,CRT 178821-178850 30 MK250016 Prevotella phage Lak-A1, complete genome 264506-264535 6 0.8
NZ_CP011105_1 1.6|178821|30|NZ_CP011105|CRISPRCasFinder,CRT 178821-178850 30 MK250019 Prevotella phage Lak-A2, complete genome 185640-185669 6 0.8
NZ_CP011105_1 1.6|178821|30|NZ_CP011105|CRISPRCasFinder,CRT 178821-178850 30 NC_013940 Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence 110137-110166 7 0.767
NZ_CP011105_1 1.6|178821|30|NZ_CP011105|CRISPRCasFinder,CRT 178821-178850 30 LR588166 Pseudomonas phage vB_PaeM_MIJ3 151907-151936 7 0.767
NZ_CP011105_1 1.6|178821|30|NZ_CP011105|CRISPRCasFinder,CRT 178821-178850 30 MH121069 Pseudomonas phage vB_PaeM_PA5oct, complete genome 268443-268472 7 0.767
NZ_CP011105_1 1.6|178821|30|NZ_CP011105|CRISPRCasFinder,CRT 178821-178850 30 MH552532 Siphoviridae sp. isolate ctbf3, complete genome 25843-25872 7 0.767
NZ_CP011105_1 1.36|180971|34|NZ_CP011105|CRISPRCasFinder,CRT,PILER-CR 180971-181004 34 MG945230 UNVERIFIED: Microviridae sp. isolate 1223-1706, complete genome 5377-5410 7 0.794
NZ_CP011105_1 1.6|178821|30|NZ_CP011105|CRISPRCasFinder,CRT 178821-178850 30 NZ_LR214986 Mycoplasma cynos strain NCTC10142 plasmid 13 155110-155139 8 0.733
NZ_CP011105_1 1.6|178821|30|NZ_CP011105|CRISPRCasFinder,CRT 178821-178850 30 MH552537 Inoviridae sp. isolate ctci486, complete genome 4928-4957 8 0.733
NZ_CP011105_1 1.6|178821|30|NZ_CP011105|CRISPRCasFinder,CRT 178821-178850 30 MH622943 Myoviridae sp. isolate ctbc_4, complete genome 350546-350575 9 0.7
NZ_CP011105_1 1.30|180540|35|NZ_CP011105|CRISPRCasFinder,CRT,PILER-CR 180540-180574 35 NC_041917 Serratia phage BF, complete genome 119260-119294 9 0.743
NZ_CP011105_1 1.30|180540|35|NZ_CP011105|CRISPRCasFinder,CRT,PILER-CR 180540-180574 35 MT939487 Erwinia phage pEa_SNUABM_47, complete genome 118545-118579 10 0.714
NZ_CP011105_1 1.30|180540|35|NZ_CP011105|CRISPRCasFinder,CRT,PILER-CR 180540-180574 35 MT939486 Erwinia phage pEa_SNUABM_12, complete genome 119288-119322 10 0.714
NZ_CP011105_1 1.30|180540|35|NZ_CP011105|CRISPRCasFinder,CRT,PILER-CR 180540-180574 35 MT939488 Erwinia phage pEa_SNUABM_50, complete genome 118425-118459 10 0.714

1. spacer 1.6|178821|30|NZ_CP011105|CRISPRCasFinder,CRT matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 6, identity: 0.8

tgataatttaagaacatataataattcttt	CRISPR spacer
agataatttaagtacatataataagtatga	Protospacer
 *********** *********** * *  

2. spacer 1.6|178821|30|NZ_CP011105|CRISPRCasFinder,CRT matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 6, identity: 0.8

tgataatttaagaacatataataattcttt	CRISPR spacer
agataatttaagtacatataataagtatga	Protospacer
 *********** *********** * *  

3. spacer 1.6|178821|30|NZ_CP011105|CRISPRCasFinder,CRT matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 6, identity: 0.8

tgataatttaagaacatataataattcttt	CRISPR spacer
agataatttaagtacatataataagtatga	Protospacer
 *********** *********** * *  

4. spacer 1.6|178821|30|NZ_CP011105|CRISPRCasFinder,CRT matches to NC_013940 (Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence) position: , mismatch: 7, identity: 0.767

tgataatttaagaacatataataattcttt	CRISPR spacer
ttataatttaagaacatataagaagaataa	Protospacer
* ******************* **   *  

5. spacer 1.6|178821|30|NZ_CP011105|CRISPRCasFinder,CRT matches to LR588166 (Pseudomonas phage vB_PaeM_MIJ3) position: , mismatch: 7, identity: 0.767

tgataatttaagaacatataataattcttt	CRISPR spacer
acataatttaaaaacatataaaaattatga	Protospacer
  *********.********* **** *  

6. spacer 1.6|178821|30|NZ_CP011105|CRISPRCasFinder,CRT matches to MH121069 (Pseudomonas phage vB_PaeM_PA5oct, complete genome) position: , mismatch: 7, identity: 0.767

tgataatttaagaacatataataattcttt	CRISPR spacer
acataatttaaaaacatataaaaattatga	Protospacer
  *********.********* **** *  

7. spacer 1.6|178821|30|NZ_CP011105|CRISPRCasFinder,CRT matches to MH552532 (Siphoviridae sp. isolate ctbf3, complete genome) position: , mismatch: 7, identity: 0.767

tgataatttaagaacatataataattcttt	CRISPR spacer
taataatataacaacatataataatgttgg	Protospacer
*.***** *** ************* .*  

8. spacer 1.36|180971|34|NZ_CP011105|CRISPRCasFinder,CRT,PILER-CR matches to MG945230 (UNVERIFIED: Microviridae sp. isolate 1223-1706, complete genome) position: , mismatch: 7, identity: 0.794

ttgctgatgcttctctagctgctgattcttgtat	CRISPR spacer
atgctgatgcttctcttgctgctgactctgttga	Protospacer
 *************** ********.***  *. 

9. spacer 1.6|178821|30|NZ_CP011105|CRISPRCasFinder,CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 8, identity: 0.733

tgataatttaagaacatataataattcttt	CRISPR spacer
ttctaatttaagaacatctaataagaactc	Protospacer
*  ************** ******   .*.

10. spacer 1.6|178821|30|NZ_CP011105|CRISPRCasFinder,CRT matches to MH552537 (Inoviridae sp. isolate ctci486, complete genome) position: , mismatch: 8, identity: 0.733

tgataatttaagaacatataataattcttt	CRISPR spacer
cgataatataataacatataataaaaagat	Protospacer
.****** *** ************     *

11. spacer 1.6|178821|30|NZ_CP011105|CRISPRCasFinder,CRT matches to MH622943 (Myoviridae sp. isolate ctbc_4, complete genome) position: , mismatch: 9, identity: 0.7

tgataatttaagaacatataataattcttt	CRISPR spacer
aattaacttaagaacatatattaattgcaa	Protospacer
 . ***.************* ***** .  

12. spacer 1.30|180540|35|NZ_CP011105|CRISPRCasFinder,CRT,PILER-CR matches to NC_041917 (Serratia phage BF, complete genome) position: , mismatch: 9, identity: 0.743

gcatcttctgaattagccacgtcttc-----aagactgtt	CRISPR spacer
tcatcttctgaattagccatttcttcttgagaagg-----	Protospacer
 ******************. *****     ***.     

13. spacer 1.30|180540|35|NZ_CP011105|CRISPRCasFinder,CRT,PILER-CR matches to MT939487 (Erwinia phage pEa_SNUABM_47, complete genome) position: , mismatch: 10, identity: 0.714

gcatcttctgaattagccacgtcttcaagactgtt	CRISPR spacer
tcatcttctgaattagccatttcttcttgagcagg	Protospacer
 ******************. *****  ** ..  

14. spacer 1.30|180540|35|NZ_CP011105|CRISPRCasFinder,CRT,PILER-CR matches to MT939486 (Erwinia phage pEa_SNUABM_12, complete genome) position: , mismatch: 10, identity: 0.714

gcatcttctgaattagccacgtcttcaagactgtt	CRISPR spacer
tcatcttctgaattagccatttcttcttgagcagg	Protospacer
 ******************. *****  ** ..  

15. spacer 1.30|180540|35|NZ_CP011105|CRISPRCasFinder,CRT,PILER-CR matches to MT939488 (Erwinia phage pEa_SNUABM_50, complete genome) position: , mismatch: 10, identity: 0.714

gcatcttctgaattagccacgtcttcaagactgtt	CRISPR spacer
tcatcttctgaattagccatttcttcttgagcagg	Protospacer
 ******************. *****  ** ..  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 970565 : 977401 9 Acinetobacter_phage(42.86%) NA NA
DBSCAN-SWA_2 1126045 : 1132364 9 Escherichia_phage(33.33%) NA NA
DBSCAN-SWA_3 1363810 : 1369747 6 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_4 2281611 : 2291735 7 Bacillus_phage(16.67%) NA NA
DBSCAN-SWA_5 2693658 : 2702295 9 Pseudomonas_phage(28.57%) integrase,tRNA attL 2689984:2689997|attR 2704568:2704581
DBSCAN-SWA_6 2814055 : 2862541 42 Indivirus(16.67%) protease,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage