CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011270	Planctomyces sp. SH-PL14, complete genome	3 crisprs	RT,csa3,cas2,cas1,cas9,cas3,Cas9_archaeal,DinG,WYL	0	11	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011270_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011270_1

2832593-2833868

TypeII

Consensus_repeat	Method
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	CRISPRCasFinder
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	CRT
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	PILER-CR

18 spacers

cas2,cas1,cas9

The CRISPR arrays of NZ_CP011270_1

>merge|NZ_CP011270|1|2832593-2833868|CRISPRCasFinder,CRT,PILER-CR
GCTGTGCCCTGGTTCTAAGGGACGCTCGGATCCCCTGAGCCTTGACCTCATCCCGCAGCTCCCCGGAGCGAAGTGGCTTGGATACACTTCTCAGTTCGCACGGGAGCGTTATCCTCTCTTTGCTGCTCGGAGGGAAGCGTGGCTCGGAGGCTCCTTGGCTTCTGCGAGTGTGGGAACGCGGAGGGCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACTCGGAACCAGTCCTGCCCAGCGTTCTCCGAAGCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACTACGACCGGGTGAAGCGCCGCCGCCTCTGCAGCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACTGGCCGAGGAACGGTACGACCGACTCGAACTGCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACTGCAGTGCGTCGTGACATCACCGCCCTACTTGCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACTGTCAATGGTTTGGCAGAGGCGGGGCATTGCGCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACTCCAAGACCACGGCGGGAACCTCTACGCCGCGCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACTCCCACTGCTTCTCAACCGTGATCCCGAAGTGCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACTGGATGCGGAGGGGGGCAACATCTTCGAAGTGCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACTGAAGAAGGCGACTCCTGGGCCGTGGGTGGCGCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACTGATGCACAAGAACTCCCTCCACCTGATGTCGCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACTAGGAACGAACGCACTTCCAGTTCTACGATGGCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACTATTTCGTCTTGTGACTATGCCCGGGGAGAAGCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACTTCTTCCAGTTCGGTCCGATGCGATTCAGTTGCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACTGACATACTCCGAATGCCCGTCACCGACATAGCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACTGCACCTGCCGGCCCGGTGGACACTGCGGATGCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACTAAAAGATCGCTGCGCAGAATCACGTCCGTCGCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT

>NZ_CP011270|1|1|2832593-2833868|CRISPRCasFinder
GCTGTGCCCTGGTTCTAAGGGACGCTCGGATCCCCT	GAGCCTTGACCTCATCCCGCAGCTCCCCGGAGCGAAGTGGCTTGGATACACTTCTCAGTTCGCACGGGAGCGTTATCCTCTC
TTTGCTGCTCGGAGGGAAGCGTGGCTCGGAGGCTCC	TTGGCTTCTGCGAGTGTGGGAACGCGGAGG
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	CGGAACCAGTCCTGCCCAGCGTTCTCCGAA
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	ACGACCGGGTGAAGCGCCGCCGCCTCTGCA
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	GGCCGAGGAACGGTACGACCGACTCGAACT
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	GCAGTGCGTCGTGACATCACCGCCCTACTT
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	GTCAATGGTTTGGCAGAGGCGGGGCATTGC
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	CCAAGACCACGGCGGGAACCTCTACGCCGC
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	CCCACTGCTTCTCAACCGTGATCCCGAAGT
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	GGATGCGGAGGGGGGCAACATCTTCGAAGT
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	GAAGAAGGCGACTCCTGGGCCGTGGGTGGC
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	GATGCACAAGAACTCCCTCCACCTGATGTC
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	AGGAACGAACGCACTTCCAGTTCTACGATG
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	ATTTCGTCTTGTGACTATGCCCGGGGAGAA
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	TCTTCCAGTTCGGTCCGATGCGATTCAGTT
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	GACATACTCCGAATGCCCGTCACCGACATA
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	GCACCTGCCGGCCCGGTGGACACTGCGGAT
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	AAAAGATCGCTGCGCAGAATCACGTCCGTC
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT

>NZ_CP011270|1|1|2832711-2833868|CRT
TTTGCTGCTCGGAGGGAAGCGTGGCTCGGAGGCTCC	TTGGCTTCTGCGAGTGTGGGAACGCGGAGG
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	CGGAACCAGTCCTGCCCAGCGTTCTCCGAA
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	ACGACCGGGTGAAGCGCCGCCGCCTCTGCA
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	GGCCGAGGAACGGTACGACCGACTCGAACT
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	GCAGTGCGTCGTGACATCACCGCCCTACTT
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	GTCAATGGTTTGGCAGAGGCGGGGCATTGC
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	CCAAGACCACGGCGGGAACCTCTACGCCGC
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	CCCACTGCTTCTCAACCGTGATCCCGAAGT
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	GGATGCGGAGGGGGGCAACATCTTCGAAGT
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	GAAGAAGGCGACTCCTGGGCCGTGGGTGGC
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	GATGCACAAGAACTCCCTCCACCTGATGTC
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	AGGAACGAACGCACTTCCAGTTCTACGATG
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	ATTTCGTCTTGTGACTATGCCCGGGGAGAA
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	TCTTCCAGTTCGGTCCGATGCGATTCAGTT
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	GACATACTCCGAATGCCCGTCACCGACATA
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	GCACCTGCCGGCCCGGTGGACACTGCGGAT
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	AAAAGATCGCTGCGCAGAATCACGTCCGTC
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT

>NZ_CP011270|1|1|2832777-2833868|PILER-CR
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	CGGAACCAGTCCTGCCCAGCGTTCTCCGAA
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	ACGACCGGGTGAAGCGCCGCCGCCTCTGCA
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	GGCCGAGGAACGGTACGACCGACTCGAACT
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	GCAGTGCGTCGTGACATCACCGCCCTACTT
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	GTCAATGGTTTGGCAGAGGCGGGGCATTGC
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	CCAAGACCACGGCGGGAACCTCTACGCCGC
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	CCCACTGCTTCTCAACCGTGATCCCGAAGT
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	GGATGCGGAGGGGGGCAACATCTTCGAAGT
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	GAAGAAGGCGACTCCTGGGCCGTGGGTGGC
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	GATGCACAAGAACTCCCTCCACCTGATGTC
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	AGGAACGAACGCACTTCCAGTTCTACGATG
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	ATTTCGTCTTGTGACTATGCCCGGGGAGAA
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	TCTTCCAGTTCGGTCCGATGCGATTCAGTT
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	GACATACTCCGAATGCCCGTCACCGACATA
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	GCACCTGCCGGCCCGGTGGACACTGCGGAT
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT	AAAAGATCGCTGCGCAGAATCACGTCCGTC
GCTGTGGCTCGGAGGGAAGCGTCGCTCGGATACACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011270.1\|WP_075093042.1\|2830226_2830688_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|366006
NZ_CP011270.1\|WP_075093038.1\|2819283_2821737_+\|FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP011270.1\|WP_075093039.1\|2821758_2825895_-\|TIR-domain-containing-protein	unknown	unknown	gnl\|CDD\|225201
NZ_CP011270.1\|WP_075093036.1\|2815202_2816504_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011270.1\|WP_075093043.1\|2830737_2831178_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011270.1\|WP_156514417.1\|2829594_2829804_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011270.1\|WP_075093044.1\|2831316_2832324_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377048
NZ_CP011270.1\|WP_075093050.1\|2843883_2844351_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011270.1\|WP_156514418.1\|2833917_2834223_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP011270.1\|WP_075093040.1\|2826505_2828548_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366883
NZ_CP011270.1\|WP_082846126.1\|2816968_2818738_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379142
NZ_CP011270.1\|WP_156514419.1\|2841522_2842725_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370821
NZ_CP011270.1\|WP_075093052.1\|2846777_2847995_+\|PQQ-binding-like-beta-propeller-repeat-protein	unknown	unknown	gnl\|CDD\|199834
NZ_CP011270.1\|WP_075093048.1\|2839162_2841430_+\|AAA-domain-containing-protein	unknown	unknown	gnl\|CDD\|183088
NZ_CP011270.1\|WP_156514416.1\|2828544_2829507_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011270.1\|WP_156514420.1\|2844354_2846304_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214861
NZ_CP011270.1\|WP_075093054.1\|2852093_2853311_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011270.1\|WP_082846127.1\|2834248_2835268_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP011270.1\|WP_075093053.1\|2848444_2851996_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NZ_CP011270.1\|WP_082846128.1\|2835272_2838689_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187774

Protein	Function_ID	Function_description	E-value
NZ_CP011270.1\|WP_075093042.1\|2830226_2830688_-\|NUDIX-domain-containing-protein	gnl\|CDD\|366006	pfam00293, NUDIX, NUDIX domain.	0.000157246
NZ_CP011270.1\|WP_075093038.1\|2819283_2821737_+\|FHA-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.7423e-54
NZ_CP011270.1\|WP_075093039.1\|2821758_2825895_-\|TIR-domain-containing-protein	gnl\|CDD\|225201	COG2319, COG2319, FOG: WD40 repeat [General function prediction only].	1.48514e-23
NZ_CP011270.1\|WP_082846128.1\|2835272_2838689_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|187774	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Very large protein containing McrA/HNH-nuclease related domain and a RuvC-like nuclease domain; signature gene for type II.	5.30258e-81
NZ_CP011270.1\|WP_075093044.1\|2831316_2832324_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|377048	pfam03466, LysR_substrate, LysR substrate binding domain. The structure of this domain is known and is similar to the periplasmic binding proteins.	1.00373e-20
NZ_CP011270.1\|WP_156514418.1\|2833917_2834223_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	7.22648e-21
NZ_CP011270.1\|WP_075093040.1\|2826505_2828548_-\|hypothetical-protein	gnl\|CDD\|366883	pfam02026, RyR, RyR domain. This domain is called RyR for Ryanodine receptor. The domain is found in four copies in the ryanodine receptor. The function of this domain is unknown.	4.78946e-08
NZ_CP011270.1\|WP_156514419.1\|2841522_2842725_+\|hypothetical-protein	gnl\|CDD\|370821	pfam10117, McrBC, McrBC 5-methylcytosine restriction system component. Members of this family of bacterial proteins modify the specificity of mcrB restriction by expanding the range of modified sequences restricted.	5.18592e-26
NZ_CP011270.1\|WP_075093052.1\|2846777_2847995_+\|PQQ-binding-like-beta-propeller-repeat-protein	gnl\|CDD\|199834	cd10276, BamB_YfgL, Beta-barrel assembly machinery (Bam) complex component B and related proteins. BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.	1.17249e-21
NZ_CP011270.1\|WP_082846126.1\|2816968_2818738_-\|hypothetical-protein	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	2.4892e-09
NZ_CP011270.1\|WP_156514420.1\|2844354_2846304_+\|hypothetical-protein	gnl\|CDD\|214861	smart00857, Resolvase, Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.	6.48606e-09
NZ_CP011270.1\|WP_075093048.1\|2839162_2841430_+\|AAA-domain-containing-protein	gnl\|CDD\|183088	PRK11331, PRK11331, 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional.	1.08946e-47
NZ_CP011270.1\|WP_082846127.1\|2834248_2835268_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	6.81714e-90
NZ_CP011270.1\|WP_075093053.1\|2848444_2851996_-\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	2.9265e-104

>NZ_CP011270.1|WP_075093044.1|2831316_2832324_+|LysR-family-transcriptional-regulator
MSNPNHLPLELLETFVAIADHDGDAAAAGRQLEISQPTVSKRLAALRRLTADGSRPPWLLLKGKRWLLTSEGERMRGVAADLIRQYRRVEAFAAGGSLPSRPEVSLACGQQAAAGFVKGAVERFLQEQPESRIRLSTARAKARIEGVAAGRFDLAVVAEAPAIIRRTARTELFVETLFEDRLVLAANPRPKATWARQWGELPTDRPAAARDLVGLPFILPEPDATRRQQFDQWIYRSTGQPVDVVIETGGWQTILDFASAGLGVALASQSAIDWLDGTRPEELTTRLLAVRDLHPRIVHLIARKIHGQNEPDLEGTAAGLRSALKRMAEVTTIPR
>NZ_CP011270.1|WP_075093043.1|2830737_2831178_-|hypothetical-protein
MSEYPVVSIGVALMKFDGRLALAWNERWGAFVLPMSKLDAGPPAETPEAAAVRAAAEVFRLPVWVATGQTGQAVRHTWRGGADGQLKDYQFTVVPVEVHPDFAAAAAGSDRVVLADVDTLLRGNYHPLSPSVKPILTACVEWGWLP
>NZ_CP011270.1|WP_075093042.1|2830226_2830688_-|NUDIX-domain-containing-protein
MRVSESALALFTRSTPDGTTAYLTQWNERWRAYSLIGGHRRKGETFRDCCVREVTEELRLMPEIDFQISDRPVTTRLEYKAFSKSAGAETRYAFELFSGWLRDDAVATRVLEAPENCWVSEAEVRAGRTLSGKAIDAQVARSLDWIAGRESAE
>NZ_CP011270.1|WP_156514417.1|2829594_2829804_+|hypothetical-protein
MGSLSQLDDHRPGLISLCHFDAQDAFIVLLLPESLIDLLDNDMARVRKHKLDSLSQVPQERLQCIATFR
>NZ_CP011270.1|WP_156514416.1|2828544_2829507_-|hypothetical-protein
MGLKAAYHGSDLIALIYEDAQQMIGVEQTVPLEEALLACVRVGEPTAQSLASLLFELYERLGRLLYSHSFDDDPKTWRDEVREPRIDRHLVRNLSDWEAPEALQLRCEVTTELEHPRWKDQFHDPVYQLRYLMDHWGERPFPRLLRGRGHGDLHGRNILVGRVEDLVLWPAVFDYGNLGANNLIAWDFVKLETEFKIRAYPRLFVHDRSFSRDVVEFETALGETSRAAHGHFDWPPRADLPTPADRLKWLLLRIRNLAARHLSQSNRSQLWRAEYDFVLSVYGLNAVRFSNLKPVERKGAYLSAGCAAARYVLPPRSGTA
>NZ_CP011270.1|WP_075093040.1|2826505_2828548_-|hypothetical-protein
MKIPTYRDVIAEARLYRQDSVPEQLLRAEEILLRGLADHPYALPIADELAHVLELQGRDDEAMRLLTDQKRRFGGSEETLCRFGKLYKKRAARLRVTSPPRALASLQEAEEAYRHAYELSHSFYPRINQLTMRFLRASLRVTLAPLSESQPLLREVREDAVLLLQEPAIWRPRLDDDNVWIPAMEGETHLLVGNWPNARSAYEEALRAADGREYYLSRMCAQVELLRDGYRDLAINVGSPFDDPRLFFGLPPEGGVSQPLRLKAPLVVETGLAAKLQPNSSVLPGVESSEIHVSTGLQAAATRLVAHQLWPYAPRRESEVAHYVLVGFGATGQALAVELGRLGHFPNRRRSRLTIADVDIESSARAFLARFCRFTSWDGATIGVSAFLPEADDWSWNRHPLPDGIRIAGGEAVQYVTNSRFVQLASARLDERFARQLVDEFAEEAVRPVVIVCGQEDRANFETAIQLRELLTNLGCRKPVPLFVWLPRQPELAATLDRDKNLFPFGAIQEVPSDGDAIAFSREAIGKHTHEEYVRQNPRLSDVAPVPWQRLSEKTKESNRSAADHLAIKLAAVADFKSHEGVSAGTEAPGVGEGTREELVLAEMEHNRWMAERLLAGWRYGPSGVDDQERANQKARGLSPVIVPWHILPRDEKLKDIQQVRAALKTAAGAIPLRAASPHR
>NZ_CP011270.1|WP_075093039.1|2821758_2825895_-|TIR-domain-containing-protein
MQPPKTLKYFAFISYSHRDAATAAWLHRSLETYRVPRNFVGATGRGGPIPARLFPIFRDTEEIPTSSDLDQVIRHALRESAALIVICSPAAAASRWVNEEVRLFKQLYPERPVLPLIAAGEPNVSDKNRASLKECFPPALRHPVSPAGKLIETRRVEPIGADIRSHADTKATALMRLVAGLTGLAFDSLRQRDRQRRRKQQWTVGISSLALSAVVVGLLIYAGASRQQAEVLQNQLTSASDTLTERTEQLSQRDDDLVRSKKQLATSESGRFEEEYVNDIRSLPGLWEDGRVDLMRRRLDRYLPGKLPTDTPDLRGFEWHYWNRLTRGAGISLRGESRLEGLVWSADSAFVYGVTAKQELVRWNVASGAREILRDSETHTTGIGIDPTGARIAVLSQKERPGALQLLSADDLATRVTIQPRVYPFMSVAFRADGELIATADVAGGIELWNSKTGEQVLNLTQNRTSRRNPLAPTQFLDRHDGPVTCLAYSPDGGHVASGGMDGSLGIWNTRSGKCEYLRQLGSGAPLWGLAYSADGTRIVTRSSPTRGGHRDQESLPGELLVWDPQTKSELHRQQFPAEVPVEQPSFAGGMGLGAIFLNDDQQVASAEGHLVHLWDSALDADPLPKKGHAARITHVRAAPDGQRLASADESGEVLVWDAQASALGAPLVETDFPGRGLALGDAPGNYAVLRDRGVSVLGSGKEEPAEERQLLLYRDGLTVPLDQASGHFRDVASSADGCWIAVAAEAKVVVWDARTGKQHSEIGVAAPKRPMSSDEFPEIRAVAFSGSDSLCFLDRKTAWKVDIASGARTELPIRQTAIPDLSGDAYSGLGFTLAPAAIVRLAFDSQGSVAALGMGSGDVVICDTRDWKELATLRGHRRGITGLTFSPDGKRLVSCSGRHIIGGHLETNHGPGEIIVWGTGHWKECLRITADNDYEFSGVALDGTNQHLVAVGNRLNPTSRRLPTGQLLAWNTAESLPPSLERLARTVREASEDEPQPEPMPPAAPVGKAPAPPPFVPGFAGPVAPPRGLAPSQPRGPTPPPGARPPSPVPAPAVQRGQAARGLAGTELRWSSLGIAKGGHVGFTSIAVHPAINQVAAVSVLGDLVVWDVRSKAIRLERRLGENWGWRIWYSTDGERLFGTDYPFGRESVMVDVASGKLTNLEREMGVTIAANQTFGKLTTLESPFNGGLRLMEEGQPVEMPALSKLFARSGLFAAGGSLLAIPTDKELVVVSPGYRKVLFSAALRNETGAADEAPLYGFSLDQTTAYVASVEGGGKETHVLRQYRLPAGDLQPETVPLRWPVAISPDRAACLEQESGRSSGTIFSRSLAEGKRSEQPCAVEPDFRGAEFFRDGIHFATFGGQYSIHIWSRFAPAIAP
>NZ_CP011270.1|WP_075093038.1|2819283_2821737_+|FHA-domain-containing-protein
MKPLTASACPALFEIATGRLHSLISFEQFVVGRSPDADLPVTNSACSRQQFRLLRQQDQWLIENLSKHNSTVHNGAPVVAPIVLAHGDVIQVDALQFEFRTAEHVVAGTLGFSDEAQLMATSTALSAAPCGPPTQIGASTTESSSSSMPSGSIAVHGQLLIGRDKGQVQILVDDPNVSRIHAQVQSKHGRIEITDLKSTNGTFHNGRQIETVTALKPGDRIDIGPMSFVCDGQNLIAKSRANNVELVGRSIRRIVPDRLTGKPLTLLDGINLVIRPKEFVCLLGPSGSGKSTLLSALSARVPATSGSVTLNQEDLYLNFEALKRDIAVVHQKDVMHDLLPVEVALNYTARLRLPADTTSTEIRTTIRTLLESVGLTHRRAVRIRDLSGGQLKRASLANEIISRPSLLFLDEVTSGLDEQTDREMMQLFRKVADEGKTVVCITHSVANVEQNCDLIVVLTVGGKLAFLGPPAEGLSYFQVRYLGDIYEKLAEAPAEVWQQRFEAHPCYSKYIDARMPPDESWEEPVPRRASALRERAKLFRYQLVLLTSRYFRIRMADSRSLLLMMGQCLLVAALLSLLFGDLTVDNANLPEIALNSRSLLFLMAVSTFWFGCNNSATEIIKERVIFSREVDVNLLPSAYYASKLILLGVIGVTQSMLLLLVVHMATAFSGNVLTYAGIFALLNVTGTAMGLLLSSLAKTEEQAVTLVPLVLIPQIILAGVISQLSGMLETFSEAFITTFWGMRALIPCLDEKLVTGLGAKEWSTKSACQMLALHFGVLVVTTLIVQALRDGRGSRFGRALARDRRRTPGRPPSRAAG
>NZ_CP011270.1|WP_082846126.1|2816968_2818738_-|hypothetical-protein
MLHSRGFSVLDSSASRRWVQLLTLSFVGIVLTGSLWAQSPPTSKPSFSKGPLEQAIDAAFQRAKSADQAVESLAILEALLQDKGLSSTQRKKIELELGAWKERAGNKLVRNGNDWVTVEVNAERIKEANFLVEKALVDLAAKDYRSCKEGLEKASRVNENGIQADFLLGMLNTPAYANSPETGERHFRKVLNRCEDHIPSLNNLALCCIRQKKLAPAIDAWRRLAELAPETPELAYNVVHLMAESANSVIPLTTTERRRFEALLVGVPPGSIPSAESTKDGWRYMYLAVPRSDVPSGSSEPSSGLMLETGLGNGFVIAPGLVVTSRELLGNAVTVKISSPTTSGELDAELVGASGFRDVALLRCTALKAPPVWMASAAPSKGANVVAMGRSRASVDAADAEVLKCKIAMLPTTEAEGLMLLDAPSAFFGGPILDEGGHVVGMRSSGFKLPADRIGAVPTSDLLAFAKMVDASFAPSTAPIPRVDEERLAVFSKAIVTIRCYQPVVPMDSPNGDSVTARWLADPVCNLCNGPKFLNCHARGCQRGKIARTRNVVAGKDPVLGKDIIKPVTEYFPCGTCNGSGKIPCPRCR
>NZ_CP011270.1|WP_075093036.1|2815202_2816504_-|hypothetical-protein
MSTATPLLPRVTCPQCWHKFQPEDVLWISEHQDLFNLDSRVPNAQLRFLPSRFSPNAEAIDPRGFPCHRLACPRCHLEVARPMMELQTFFLSIIGAPSSGKSYFLAAMSRQLRRMLPIKFATAFADADATFNMRLKQYEQSLFANPRPDQLQEMQELILKTQTTGDEYGYAAVNYGNQSVMYALPYLFTMRLQENHPNIERRGFGRTICLFDNAGESFLPGQEKASAPVTRHLAEASMLFFVFDPLQDSRFRRLDESLNEGVTDKSHLGSQEGVFEEAATRIRRFAGLATNQKYNRPVTVIVTKCDRWLHLVFDNPRDLSAYAHAAWTSPDGTSRPQLGMDTTLIDKVSQRIRKLLISTCTEIVSAAENFSKQVRYIPVSATGWSTHVDAATGRPMMRPGEVEPFWAEVPFLYAMANSSLGLIPKIRAGKLEL
>NZ_CP011270.1|WP_156514418.1|2833917_2834223_-|CRISPR-associated-endonuclease-Cas2
MWLFAMFDLPVDDRAAKRNYVRFRNLLLDNGFSQMQYSVYARCCDSEQTADAHRDKIVRKLPRDGHVRLLMVTDRQFGKMEVYHGKTRAAPEPQPQQLQLF
>NZ_CP011270.1|WP_082846127.1|2834248_2835268_-|type-II-CRISPR-associated-endonuclease-Cas1
MSSSSFVLALSHPANSDLKVLRSHSRHRRSTSPSPGRADAEPYSRNCRISRAPPRRTATARRSASGREAHSIPLDDLAVVIVAHPQVSYTQAVLTELVAHGGTLVTCDRARMPVGLLLPLDAHSTQTERFREQFSLPLPRAKRLWQQIVRGKIAMQAGLLTETHETDAGLAALLPLVRSGDPTNVEGRAARRYWTALFGSDFRRDRDAADHNRLLNYGYAVLRAATARAICAAGLHPSVGLHHHNKYNSWCLADDVMEPYRPFVDRAVVQVASGRESLAELDRDIRQQLLGSLTRHVRIHQQIRTLFDALTLTAQSLAQAIQEAGAQLKLPEGFADAPE
>NZ_CP011270.1|WP_082846128.1|2835272_2838689_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MWPGNSPFRLCESISLSGCTLKPGHFVMRYRLGLDLGVSSLGWAVIQLSKGNTPKPVKLVATGVRIFEAGVEGDVEQGKDSSRGAERRNARQPRRQHWRKQHRKRNLFVWLQQIGLLPKTVPYPPESMDGKRGALSDVRDQEIKALDAQLGKKHLPQEFEHGDRDALIAYQKLPYILRAKGADGETLDPFELGRALYHLVQRRGFASNRKGKRDADEEGKVAGGIKATNEARGDRTLAQYVRDSFTLRQGRFGFENDAGHFGVENEQDKSGQVVKRYTAREMYRDEFRAIRAAQAPLHPRIPESDWDRIQRILFFQRPLKSHSRLIGRCSLEPDRRRCTIAIPLFQEFRVLQAVNHLQAVIPGQGKRCLADEERQIVLGALQNQGEMALSKVRTLLKLPKGTTFTQQGFGEEEDQKLIGHRTNAKLAPIFGGEQWEGLSDDERERVALEVLHYRKPQALQRRAKAKWNLSDEQAKRLADASLEEGYGSLSRQALEKLLPLMRNGAPYATARLAAYPASLQAGTAHDKLPPVHHWNRDIRNPAVIRALTELRKVVNALIDNYGKPEQVFIELARELKNSRDRRKQLWKDNEDNRKRRERAADEIVAQLKNIPRPSRADIEKWMLAVECDWTCPYTGQRIDAQSLLGPHPKFDVEHIFPRRYLDDSFGNKTLCFVDFNRHQKKDRLPIDCLSPDEYEKTLQRVRAFKGPHAERKLERFEMPAVPEGFVTRHLNDTRYNSRLAAQYLGTLFGGRNDQEQTQRIVTPTGGLTWMLRRGWHLDRVLSENDEKNREDHRHHAIDALIVALSSQDRIQKLASLAEEGARPGGRFNAFLDGLEQPWDSFLDEARQCIGSLYVSHRPTRTLAGPLHAETNYSKPFQVGDGKKAKPEFRIRKSLDRLTEKEIVGEQIVDARVRLAVQQKYQELCAAAVNKSDKVPAKFWADKNGKPENFPMLRKENGSGPGSPIFKVRLRTDSKPRTVGQGATQRQIASGKDSNYASMVYTVLNEEGQELYWAHEVITRLDAHLTLNANRKTPGEKVLIPKTTEQLQFAWKLKPGQTVKFLFSLTKNDSLLLTGPDGKDALYRVQKLSDNELQLCEHTQLTIANPDRTTWNRLQSIDSLRKRSTRKVRVSPVGEITSH
>NZ_CP011270.1|WP_075093048.1|2839162_2841430_+|AAA-domain-containing-protein
MFDQRVLEQVRTCLGEVADSREIPSAEQLDAYFATFRDRFGPQQLGSLDGDALLERMHGRSDAHGSLMYWLEFKDDAEFPGIFGGIGGGSALKFGIFQRKENGEWVTGSAQKQTVLSRADAIAYVRRQRDQLLACVQLMDSLPVDSPLSSYLELQRSINEAAPDVAQLGWTHKYLSLLFTTKIDDIHSVEHQQFHLHRLLMTPPEEKGRYVCTWHFVQLMRELQTSMFQTTAALYRRNGSPFRYWRIGSSEGSEPRSRWEMMRDENVVAVGWGKLGDLSGFRSGSGGGEQLKPLLAAAYEKGAPQIGNEAGQLWMFISKMAPRDIVAVMDGATVLGIARVEGDYFHAEGQPFPNRRKATWQSLDEWKMTDPAGLRRSVTSLDKYSKTIVELERKLLAGGGTVAPIPPPLPELTGTRARIQSTLERKGQVILYGPPGTGKTHWAESTARELAARDAFGMTYEDLTPEQRREVDGEGEQSGLVRFCCFHPAYGYEDFIEGLQPRGSDGPLGFVVKPGIFRRLCEEAAQAPKRMFYLIVDEINRGDIPRIFGELLLLLEKSRRGLQVLLPMSRSAFSVPPNVRLIGTMNTADRSIALLDTALRRRFGFVELMPAYDTLRDTVIEGIPLAPWLQELNARICRHIGRDARNLQIGHSYLLEGGKPINTFTRLSRIVQDDIIPLLEEYCYEDFEVLQNILQAGLVDVEKQQVRHEVFDAERKADLIHALLAFCPDVVASKEALEADETESSEVDDNDGEPQ
>NZ_CP011270.1|WP_156514419.1|2841522_2842725_+|hypothetical-protein
MAARSIAALHVGPMLEVDELREGTRIRSFAFVGRVSFGSVEVTIDPKIPRTPLMALLRYACGGTRMARLMSTPFSTEDDSFQDLLVEQLAREAENLLKSGLIRCYSRQTEWLSSPRGRIDLATYARAAQTSAKLHCTHFPRLADWAPNQLLRAGLKLAASLATSVELRSKMRRLMSMMGDAVTLVPLNRPLMEEWERGRSRQTRAYETAVELIRLLAHGAGLSLSEENETIRINGFLFDMNRFFQTILSRFLQEHLAGYEVEFEHRLKGMMSYVREKNPRNRQSPTPRPDLAILRRGRVVRLLDAKYRDLWNSPLPTHMLYQLAVYAIGGGADGTAAILYPTTDPQARDAAIAIRDPVRDTPMGQVVLRPINLIVLSNLVRGSNSRACQQEAMRWAGVEW
>NZ_CP011270.1|WP_075093050.1|2843883_2844351_+|hypothetical-protein
MSPSTIPATPASDGFEKAVEALARQDVDAMVTYLHRVLPPGTVTKTFSIPAEIYLRLAVMLRFRLWEERGIPCHIDAGLPSSSEVMHELARELKTFELKNTAYELGAHMLCVLRNDILWNTEDDSLRFKTAINVDLTDDLIDAIAGFLLQQTREI
>NZ_CP011270.1|WP_156514420.1|2844354_2846304_+|hypothetical-protein
MSKKLSRPAAGRALFYSRDSGGQHEMTPGKYVEWAAAKARALGLKFNGTPEVIRSLIERGQCRRGDVFFDNCVSGNVLKRDGLDSLFAEIERDAGISHVFIPRRDRLARPDRPAEGVELEHRLRTAGITLVFQERSLPPLKRGVRENIGDQITALVEYDASGKFRDDHSERMIWAKLALAQKGHSTGGRPPFGYRRFLVDEAGNEVRQLVDGEKVRQAGHHVEWRPGPPEEIGLILRIASMLETMPALRVAKVLTAEGIPAPDAGRTRHDNGIPHQVRGVWHQTTITNIARNPLSRAIVIFGRRAMGDRRRMTPSGPRPVEEEDRRADGQPKVCQVPVEERISAPAAFEPLFPKEQADRLDAILDKRAGSQRGKPRSRDPEKNPLGARIFDMACRWPMYRAADGDRYFYRCGLYQQSDGAECRHNRIPGAQAAQVGLAAIRQQFLDPEARSALKAKLEAKLASLAAVEPSHVLELRKVTSDLASAEEKLAVIERNMAEATNAKQLAAMQRVFDERSAELERLREKKDALSAMSVAPRDHELAVQRAMDLLNNLPDLIEQAENQGAVKRLFDLVDLRMYLSFEQVKKTKRTLNQLAGGIITIGSAPAPIQPYSGPTTRGSIEKASEMVSEAVPSVDEEESLRNVSRGDRI
>NZ_CP011270.1|WP_075093052.1|2846777_2847995_+|PQQ-binding-like-beta-propeller-repeat-protein
MRKSVAAVGVWLLGLAAVAAAGDWRQFRGTDATGVAVDEAVPLKWSDTENLAWKVDLPGRGLSSPIVVGNRVYVSASSGVRQERLHVLCFDAATGSRLWERQFWATGRTSSHPKTCNAAPTPCSDGRRIFASFSSNDVVCLDLDGQLEWYRGLTSDFPNASNSLGMSSSPIVVGETLVCMVECDAESFTTGLDVATGKARWKIDRPRRANWTSPGILRGKETGGDRVLVQSTAGVVALDPLTGKPEWTYSEGASSIPSLVVDGQVAYVPSHGITALRSTPSGSDVPEMLWRAEGASPGTGSPILYQGSLYFVAGSGVLTSLDPKTGEKKWQTRLKGPFSGSPVAAAGHLFVFNEEGLGQVVNLSGDKGDVAHTHGFGEIILCTPAISDGAIYVRSDGHLWKIGSR
>NZ_CP011270.1|WP_075093053.1|2848444_2851996_-|EAL-domain-containing-protein
MSFFREQSIVPECSEKSHPPRDYLPAPKESPGSAIGKLHGPFDNTRQEHPGRSRRVVMPLGTRMPWNAFPLARARLGIRATVVLPLVCGTLAIAMLGLHWIGESEKSQRERHLQTQAWTLGRTLADVASADANRVLLTRLAASYVAEPGVQSVVIANGKPPAVPLTVAIANQSVWTGRSFSEIPELADSADAAARAAETGQAEFRRIPGTIETVELLLPFVRPFAEGPSTPGLVAIRIDGSLLKAAHDIRTRRLGLALLGAIGLLSTGVYLLIRQSVLRPVEAMSRFADEIALGNRDARLKVGRHDELGRLARQIDSLFREVLRREERERAARAESQAARQRTESTLAELGSLKYALDQHAIISVIDQYGYFTHTNNKFCQQSGYRREQLAGMTHRLLDAGPDADAQWDGIWRTLAEGNWHGEMCCRAADGSLYWVDNTIVPFRDGEGRVSQYVVMGTDITPRKRAELEMANERALLLAFVEHAPAAIAMFDRDMRYLAVSERWITDYGLEGREIIGRTHYEVFPELPGRWREVHQRCLAGETVTNPLDIWRPDDADCDQILHWEVRPWRHGDGSIAGLMMFTEDLTQQKQTEAALRETKEQFELALSGSNDGIWDWSVLSGNVFYSRRFKELLGYAEDEFAHRFESFDEHVHPEDRQEVMDKLQRHLEEGDQFDAVCRLRTKPGPFRWFRFRGEAVRNDQGRARRMAGSLSDITSLKETEERLRESARIDQLTKLPNRALFLDRLSQQMQRSVRTGHFGYAVMFLDFDRFKIVNDSLGHDAGDELLVQIAARLREQIRGVDSVSCHLDESTTARLGGDEFVVLLTELRTPDDARVVADRLMGALARPYVIGEHEVYSTASIGIVVGSPRYDRPEDVVRDADTAMYEAKRNGKSRYVLFDASMHERVRRRMRLESDLHRAIAENQLFLVFQPIYDLRTRSLESVEALVRWKHPDQGLISPGEFIPVAEESSLILMIGEWVFREACRRFAEWRKMLGPWAPPSISINVSRKQFSQRELPNVVASALQTYGIEPSQIHIEVTEDFFAGDIKSAVRAMNAIKALGLKLSIDDFGTGCSSFASLHQFPVDTLKIDQSLIGEISRSEDAVAMIQGLTTIARSMEIKVVAEGVETAEQAAKLLELGCDYAQGFYFARPLTNENLIALRLKEVPVDAALPEAGVSSSVPS
>NZ_CP011270.1|WP_075093054.1|2852093_2853311_+|hypothetical-protein
MRTFWLIALVPLLLPAILRGEEQVEDRSGQPCWILRSDRVEVAVTKVGGHMAPVVFDRTSEKPIQPYYVSPWQTEKRTLDVPVLVPLRGDFFCMPFGGNAEAFKGEKHPPHGEVAGSPWQFVSSVDGTTADGKRLHTLTLALETKVRPGKVTKRIQLVDGEDVVYTQHVVEGFRGPAPVAHHATLALPETPRSVEIRVSPFRFGRTNPGVFSDPANREYQALAVNAPFEDLRKVPVRFKDASDADLTAFPDRTGYADLIALANKPDGANPAWVTAFNRETKSMWFSLKDPAVLPMTVFWIENRGRHASPWDGRNRCLGLEDVCAYFADGLVPSVTPNALNEQGVKTAHVLSGEEPFVVNYIQGAAPATGAAGRIEFGPGAMTVRGEDGTAKTVPVRHEFLKTGKL

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Crispr_ID: NZ_CP011270_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011270_2

2972123-2972205

Orphan

Consensus_repeat	Method
CCGGCCAAGAAGCTGGCGCCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011270_2

>merge|NZ_CP011270|2|2972123-2972205|CRISPRCasFinder
CCGGCCAAGAAGCTGGCGCCGCCAGAGGAAGAGCGGAAGGGACTTCCAAAGTCTGAAGCGCCGGCCAAAAAGCTGGCGCCGCC

>NZ_CP011270|2|2|2972123-2972205|CRISPRCasFinder
CCGGCCAAGAAGCTGGCGCCGCC	AGAGGAAGAGCGGAAGGGACTTCCAAAGTCTGAAGCG
CCGGCCAAAAAGCTGGCGCCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011270.1\|WP_082846138.1\|2967199_2967790_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274379
NZ_CP011270.1\|WP_075093120.1\|2968378_2968897_+\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
NZ_CP011270.1\|WP_075093119.1\|2965956_2967207_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011270.1\|WP_082846137.1\|2963515_2964700_-\|redoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|279210
NZ_CP011270.1\|WP_075093125.1\|2974376_2975201_-\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270257
NZ_CP011270.1\|WP_082846141.1\|2980252_2982064_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379155
NZ_CP011270.1\|WP_075093129.1\|2978282_2979239_-\|DUF1559-domain-containing-protein	unknown	unknown	gnl\|CDD\|284919
NZ_CP011270.1\|WP_082846136.1\|2957047_2960665_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP011270.1\|WP_075093118.1\|2965075_2965486_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237950
NZ_CP011270.1\|WP_075093123.1\|2972616_2973714_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP011270.1\|WP_075097067.1\|2970016_2970403_+\|BlaI/MecI/CopY-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367747
NZ_CP011270.1\|WP_075093130.1\|2979596_2980256_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274379
NZ_CP011270.1\|WP_075093121.1\|2968886_2969498_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011270.1\|WP_075093116.1\|2955140_2957051_-\|CRTAC1-family-protein	unknown	unknown	gnl\|CDD\|369440
NZ_CP011270.1\|WP_075093117.1\|2960699_2963387_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011270.1\|WP_075093126.1\|2975197_2976238_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378934
NZ_CP011270.1\|WP_075093132.1\|2982113_2983175_-\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	unknown	unknown	gnl\|CDD\|234597
NZ_CP011270.1\|WP_082846140.1\|2976708_2977446_-\|DUF2493-domain-containing-protein	unknown	unknown	gnl\|CDD\|378473
NZ_CP011270.1\|WP_075093124.1\|2973710_2974373_-\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226629
NZ_CP011270.1\|WP_156514432.1\|2977619_2978048_-\|carboxypeptidase-regulatory-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379297

Protein	Function_ID	Function_description	E-value
NZ_CP011270.1\|WP_082846138.1\|2967199_2967790_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274379	TIGR02989, Sig-70_gvs1, RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are abundantly found in the species Rhodopirellula baltica (11), and Verrucomicrobium spinosum (16) and to a lesser extent in Gemmata obscuriglobus (2).	2.78428e-34
NZ_CP011270.1\|WP_075093120.1\|2968378_2968897_+\|RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	7.13732e-26
NZ_CP011270.1\|WP_075093125.1\|2974376_2975201_-\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270257	cd13539, PBP2_AvModA, Substrate binding domain of ModA/WtpA from Azotobacter vinelandii and its closest homologs;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins that serve as initial receptors in the ABC transport of molybdate in eubacteria and archaea. Bacteria and archaea import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. In contrast to the structure of the two ModA homologs from Escherichia coli and Azotobacter vinelandii, where the oxygen atoms are tetrahedrally arranged around the metal center, the structure of Pyrococcus furiosus ModA/WtpA (PfModA) has shown that a binding site for molybdate and tungstate is where the central metal atom is in a hexacoordinate configuration. This octahedral geometry was rather unexpected. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.20556e-100
NZ_CP011270.1\|WP_082846137.1\|2963515_2964700_-\|redoxin-domain-containing-protein	gnl\|CDD\|279210	pfam00837, T4_deiodinase, Iodothyronine deiodinase. Iodothyronine deiodinase converts thyroxine (T4) to 3,5,3'-triiodothyronine (T3).	1.16183e-16
NZ_CP011270.1\|WP_082846141.1\|2980252_2982064_+\|hypothetical-protein	gnl\|CDD\|379155	pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases superfamily. This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.	1.4353e-14
NZ_CP011270.1\|WP_082846136.1\|2957047_2960665_-\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	3.72937e-13
NZ_CP011270.1\|WP_075093118.1\|2965075_2965486_-\|hypothetical-protein	gnl\|CDD\|237950	PRK15346, PRK15346, EscC/YscC/HrcC family type III secretion system outer membrane ring protein.	0.00515021
NZ_CP011270.1\|WP_075093123.1\|2972616_2973714_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.04419e-96
NZ_CP011270.1\|WP_075097067.1\|2970016_2970403_+\|BlaI/MecI/CopY-family-transcriptional-regulator	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	2.02984e-23
NZ_CP011270.1\|WP_075093130.1\|2979596_2980256_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274379	TIGR02989, Sig-70_gvs1, RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are abundantly found in the species Rhodopirellula baltica (11), and Verrucomicrobium spinosum (16) and to a lesser extent in Gemmata obscuriglobus (2).	2.56368e-40
NZ_CP011270.1\|WP_075093116.1\|2955140_2957051_-\|CRTAC1-family-protein	gnl\|CDD\|369440	pfam07593, UnbV_ASPIC, ASPIC and UnbV. This conserved sequence is found associated with pfam00515 in several paralogous proteins in Rhodopirellula baltica. It is also found associated with pfam01839 in several eukaryotic integrin-like proteins (e.g. human ASPIC) and in several other bacterial proteins.	1.56026e-14
NZ_CP011270.1\|WP_075093129.1\|2978282_2979239_-\|DUF1559-domain-containing-protein	gnl\|CDD\|284919	pfam07596, SBP_bac_10, Protein of unknown function (DUF1559). A large family of paralogous proteins apparently unique to planctomycetes.	1.24163e-52
NZ_CP011270.1\|WP_075093126.1\|2975197_2976238_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378934	pfam12727, PBP_like, PBP superfamily domain. This family belongs to the periplasmic binding domain superfamily. It is often associated with a helix-turn-helix domain.	2.33488e-40
NZ_CP011270.1\|WP_075093132.1\|2982113_2983175_-\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	gnl\|CDD\|234597	PRK00050, PRK00050, 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH.	3.43225e-97
NZ_CP011270.1\|WP_082846140.1\|2976708_2977446_-\|DUF2493-domain-containing-protein	gnl\|CDD\|378473	pfam10686, DUF2493, Protein of unknown function (DUF2493). Members of this family are all Proteobacteria. The function is not known.	4.77948e-07
NZ_CP011270.1\|WP_075093124.1\|2973710_2974373_-\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|226629	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism].	1.1758e-70
NZ_CP011270.1\|WP_156514432.1\|2977619_2978048_-\|carboxypeptidase-regulatory-like-domain-containing-protein	gnl\|CDD\|379297	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain.	0.00023307

>NZ_CP011270.1|WP_075097067.1|2970016_2970403_+|BlaI/MecI/CopY-family-transcriptional-regulator
MKLDQVTETELSILQVLWNGQEATTREIAEALYEEVTDPKVASVQKLIERLEAKGCVERDRSERAHRFRPLVTREAFLRDRLQAMADRLCSGSLAPLMSALIDSQDVPKADRQKLRSLVEKLWPESGS
>NZ_CP011270.1|WP_075093121.1|2968886_2969498_+|hypothetical-protein
MDDESLAELWGSQPVPPMADEDAVVKSLRSAHRGEDRRMLWLNVQEGVPSLLLFFFFGGAGLSVRSGKWAFLGAAVLCLGVGVFLVVSTLLQRRREARFGDTVREQLQRSLSQVRHREWLYRNIFVWYLLPAASGWGMVVYVTMFRDGPSVFAVVYVALSLAFFGWVYRLNRRVATSRYTPRRRELEGLLATLDAAPPDGPVR
>NZ_CP011270.1|WP_075093120.1|2968378_2968897_+|RNA-polymerase-sigma-factor
MNDADHEQLFRSWLRDYRGIVAKVASSFTSSASDRDDLVQEILLRVWAAMPTYRAEARPGTWIYRIALNRALTWRDDESRSRCRNVPLLNPVDPREAGEGPSERIEQLYAEIRRLDEIDRSLVLMSLDGCSYREMAEVMGMSESHVGVRLTRARKTLTERLAPLREEVGYGR
>NZ_CP011270.1|WP_082846138.1|2967199_2967790_-|sigma-70-family-RNA-polymerase-sigma-factor
MTTPAPNSAPEAKPRLVRDLSREDSRELLAVNWAKAQPSLTAFLIASTPQFSDAEDLLQEVAAEVARRFDDYDASRPFLPWALWVAKIKIANFYRARERSPVKFIGDSIDALAEACDRVQLTLSEEKWALEKCLNAVTGRSRELLQLRYFEDMSPQEISDRVGMTPGAVRIALSRIRSALITCVRSSLTEAQGSHG
>NZ_CP011270.1|WP_075093119.1|2965956_2967207_-|hypothetical-protein
MDDDEAFELIDAHLDRQPLTDEQSDALSAWIRTEPQRADEAFFRIFLHSYLRMRLQAGLISAGSDVSVLSGVYRPPAVAMGELNGLLTDALETPRRRRRAIMRWVAGSAALMLVAVAGWWSTGWRGAAALFSVPSDQPAHSFAHEGFFYPATPLPTTGDEEFRWPTSGGMQGLNGGSGWAEPWQETNSKVAIVVDYARQDTPWESKDMRKFGPLGYSDSNGNVLRSSGHQMRTANTPRSITTRRFDLRAFPRSMQDEKGLGRDGSVMWFSLLAQSSLSTAENNRYSYLVIGNKMVAGFRIGKLGAAPLGNWTAVGLMTGDEVNLRSSVFPSGEMVFMVTRIVFRPGPEDATVWINPRLDGEPQPEDASLKLQVPDFRFDGIAIHANHSTDFDELRFGGTFRSVTPLQPKPANPAGG
>NZ_CP011270.1|WP_075093118.1|2965075_2965486_-|hypothetical-protein
MLHLSQPRPSLRQTLLGFLALAIGVSLSGSAWARCGNLPHNWDHAAMIQPEFGLDLLATPAPPKVPIAPKCSGPQCSEAPAPTPAPRPIEPIPVQDIVLASGTSLNGGESLGFVRDGSPLLRPLPLIDGIFHPPRH
>NZ_CP011270.1|WP_082846137.1|2963515_2964700_-|redoxin-domain-containing-protein
MTARVARSASLLSTLLATSLAVADEPTPPVPELTPEAQAAAADLKKSLPRNSEARRMLDDILKGAMLGPTDGWFALSKAHTRYPWATLKERFDKNSDGEIAREETSLGEVPFARLDKNGDGVLTDSDFDWSEVTMSRSPANFVFGRSDQDGNGKVTAEEFEELFRRLGGEKDGFISLDEIREQLQPPASSRNDAPPADMPSASTLVLGLQRQEIGSQQPGPDLNAAAPDFTLQTLTGETVTLSKEIGEKPVVLIFGNFTCGPFRTQAGNIEKFYNRYRDQAKIFLVYVREAHPQDGWWMNSNRRIGIDPRQPQNNTERREIAATCQKHLDLDVPFLVDTTDDVVGATYSGMPNRLYVIDTDGRIAFKNARGPFGFKLREAEQALILTIADAAKD
>NZ_CP011270.1|WP_075093117.1|2960699_2963387_-|hypothetical-protein
MSSRILRLRCGWAAPFAIAAFALLSTSLSFGEGSMTFPALSNSQAWERLPAARQGSGASLPPWARILAGELPRSTATLLELDLAQRTRGPIPLGLRAGMRWVSAHANGSAFGAAQALADARRGGVDAARVEGLTQEGYPGWSSEERKALDFARKMSVTSSQVTDKEFAGLVDAFGDRTAASMVLLMAYANFHDRLMICLQVPATEAAAPPADITFDAAVLARPTAPPANLPPWPKSAAPNDVPPDAEWAKVSYDDLQTKLETQRRKPTRLRVPEWSEFAGSLPSGLFDRPSDIVWYRIVFGYAPELAIPFEVYLRTAGSELGPRLDRMFGGSLFWVVTRALDCPYCMGHCEMNWEVAGLSPAEIADRSRLLAGNDWSSFSPAEQHALAFARKLTQALAKVSPQDVAQVVNDFGPARAAGLLLNASRYHYMTRISNGFQLTLESDNVFFDYYNVKRPVSEPPPVPVLTSDEAWKALPKVVSGAGQPLPVWVRAVAGRLPRTAAAMLQLDFAQRTKSPVEPTLRAKMRWVIAHANRCEYTQADALADLRRGGGTDADIQALTGPSSLWPEADREPLEFAKLLTVAAPTIPDSLFESLRQRFGDKPVAAMVLLGAYGNFQDRFLLGLNLPMEEGGPLPPLAVTFTDEVFQFAPFVPPNNPLPVLRTDGETIVPEADDWASTSYGTLQTRLESQRNRKPRLPVPVWDDVKKNLPPAMAARPTRIVWNLVCSGYVPELAVPWSIATRTLWTEAPNDRVLEESLFWIQTRAIGCNYCMGHCEMLLEVAGLDSQGIADRTSRLAGADWSAFEPREQRAYAYARKLSRTPWDLTPEDYRQLEKDYGPKEALSLYWWLCRGLYMTRVSDGFQLPLERENVFQYLRPMPPTESPAPAAAPAGNGK
>NZ_CP011270.1|WP_082846136.1|2957047_2960665_-|hypothetical-protein
MPDSSYPRLAPPRPHAIAAARNAAAIVAVLILGAVPSGCEPKRPSPPAPTASEPAAAPAPRALPASYGEFVGAFELGLAALDADVPQMAEASLNRAVELIPDEPAAWADRGLLNLRVGRLPEAERDLAEAQKRAPNDPAIEKLLGLLKQKQGDFGAAAGHLRKALKKDPGDVRTLFSLARLIDQERAPGSEAEYQRLMEQILAQRPDDLMVLSERLRTAARRNDAAAVTDTLKQFDALAPNWETRTQTMLADLKRTLADPKKPSTVAPLLRFTNVLKAERGYARKAAEIQPPDSLLGDPLRAFLTLPASVPQPAAADAAIAFARDESAAFPAGAWKTVLPVWLSSEGNPVTFLASDTELHRADQEVSIPSIPAAPGGIVAIDWNNDQRTDLVVAGPQGLRFLQQKEDGTFEDVTAKTGLPEDVLTGHYGAALAADLDLDADLDLLLSRASDSPLQLRNNFDGTFRPEPVFAEAKGPQQFAWGDFDADGVPDAALLDAEGRLRVYANDRMSSFRPWPASAPTDRFLAIAVADANEDGAFDLVTLRQDGGLLVLADEGKRARWTVAELGRFAGLDSQTAPGAVRLFTGDFDNNGAIDLLASGPSSSLLWLGEAGKSFQPAAAKLPPNLLAAADLAGTGRLGLLGLDPDGQPLQLQSRGEKNYHWLTLRPQATKADGDNRINSFGIGGSIEIRSGTLVAKQPIERPAVHFGLGERPQADIARIDWPNGAPQFEFNLKPDTTVVALQRLKGSCPFLYAWNGERFEFVTDFMWSTPLGMYINASNKGGFLQTTDWVRIPGEQLVERDGHYDLRVNANLWETHFFDQVGLFAVDHPAGTEFFVDERFCMEPSEPTFQLVEKRQPVVRAWDHLGQDATEEVRETDGVHLDRAGRGRYQGVTNDHWVEFDLGPVDPADGPVWLIARGWVHPTDSSVNYALEQGEHARPQGLVLEAPDVPADGRIEDDRPWTGAWKTARDKLGFPAGKNKTVLVRLDGLAGEGVPRRLRLRTTMEIYWDSLAVARGLDPGAVQRTDLVPTQVDLRFRGVVAMTQANPGSPELPHYNQLVGIGQPWRDLIGYHTRFGDIQELVRSVDDRYAILTAGDEVVLRYPVPTPPPAGWKRDFVWVSDGWVKDGDFNTRFGKFVLPLPAHDMTTYDTPPTTLEEDPTYRRHPQDWDVFHTRYVTPELFERGLRPPRSPAPSAAPTAARRTP
>NZ_CP011270.1|WP_075093116.1|2955140_2957051_-|CRTAC1-family-protein
MSRGQKQAVITCLFVGLLVFVALRGSGENLWNRIGGQEGVADSRGGSRATPLERYGFHFTESAKEAGIEFQHHAPTLDAKLAHIMPLVNPMGAAATVLDYDADGWLDLYFVTSDAGGQNALFRNKGDGTFEETAAAMGVADLNQPGTGACMGAIAADYDNDGYPDLLVYRWGRPELFHNIEGKRFERVTEGSGLPAWMNANAACWLDYNRDGRLDLFLAGYWPDNIDLWNLSTTRIMPESFEFATNGGGKVLLKNLGDGKFENVTKAVGIESTRWTLGVVSADLDGNGYPDLVLANDYGVSEFFASRGGERFEEVGYASGIGVTPKSGMSASLGDPLNEGRQSVYITNITEPGNLVQGNNLWVPIGEIDEGAGRGVQRYLNQAGTLNIERGGWSWGAKFADLNNDGWLDLFQTNGYISAAVGKSYWYDYGKIAGGLKGLIGDAKFWPPIGDQSLAGFQTKCVWLNKGGDFTDVCAAVGVTETNDGRAVALADLSNRGVIDVVVASQNGKALLYRNTVAEGQDWIQFQLTGGARPDANASGRPAQIPWSNRSAVGAEVVVIWRTAEDPSPRRQQQVVTAGDAYASQSMLRLHFGLGKTAVIEEAVVTWPSGRTTVLKEPAVRTLHRLDETDSKEPTP
>NZ_CP011270.1|WP_075093123.1|2972616_2973714_-|ABC-transporter-ATP-binding-protein
MTGQLEATFRRRFPAGPVVEADLRIPIDTFHVTVLFGPSGAGKSTLLRVLAGLERPESGTIRFGDETWCDTERGIWLPPQQRDIGLMFQEYALFPHLSVAENVAFGIARLPAPERQSRLEEALKSFDLTDLRDRYPHQVSGGQQQRIALARTLIRRPRLLLLDEPLSALDGPLRNELQGELRRYLVRHQVPVLLVTHDPTEAANLGDDVAVMDQGTIRQRGPLPEVFQDPSSVEVARIVGMDTILPGTVVDRRDRRLTVDTAGVRWTVSAADGKEMSRSVHLCFRAEDVRVRKETATRDDAENAHVGRIERISSDGPMTRIEIRSSVTLSALLTKGGVRELGVAVGDNVRFDVPAAVIRPIDRME
>NZ_CP011270.1|WP_075093124.1|2973710_2974373_-|molybdate-ABC-transporter-permease-subunit
MDLTAIWLTLQLATATTVILAAVGLPLAYWLAMTPWRGKFFVEAIVALPLVLPPTVVGFYVLIATGPYSPVGSAYEAATGQRLAFSFPGILVGSLLCNLPFTVRPFLAAFQSLNRRLVEAAWCLGESGWRTFWRVALPLSWPGILGGLVLTFAHTVGEFGVVLMVGGNIPGVTRTLSIAIYDDVEALDYASAGRTSLLLLVFAIGMLSLAQKLGQRRMPA
>NZ_CP011270.1|WP_075093125.1|2974376_2975201_-|molybdate-ABC-transporter-substrate-binding-protein
MNIRLSGLLLLVLVSLAGCRPEAPAKPAPPATDASPKGTSTVSVAAASDLKFAFDELVRDFEKASPGTKVTVTYGASGKFFAQLSNKAPFDLFLSADIAYPQKLIEQGHAAAGSEFHYADGQIVLWVRNDSPINLEEAGAKAVLDPSVRKVAIANPEHAPYGRAAQQALKSLDLYTEIEPKLVLGENIAQTAQFVESGGADIGVLALSLALAPALSEKGRYWILPPSAYQPIRQGGVILNWAADRSAAERLRDHLLSERGRAALSHFGFHAPGE
>NZ_CP011270.1|WP_075093126.1|2975197_2976238_-|helix-turn-helix-domain-containing-protein
MASYNQSGHRVRKRRSELGWTQDELARRAGISRSAVTAVEAERLVPSVEAALGIARALQTTVEALFSPVDPATSTEVWAWPPAASTSPAWTATVGNRIVRYPASSIPMWTPLPHPETPGADQVETLAVAGCDPAAGLLASRFAAVTGLRLLAIPRSSRQGLELLRDGLVHMAGLHLATADAPEANIQAATQTLREPFRLLRIATWQDGVVVSPTAKLRSVEAAVAPKVKWVGRETGSGARQCLDRIFDGRPAPRRTARDHRGVAEAIRSGWAEAGVCVELVSAEAGLDFLPVQQEAYDLCYPARLADDRRIKALVSVVRSPAYRRLLDQLPGYDTSETGSLWESKG
>NZ_CP011270.1|WP_082846140.1|2976708_2977446_-|DUF2493-domain-containing-protein
MPHSGTTPDARNSARGPAGPRERTTSGCALDTRSPGAPSRIRPRTSPTGAAPTVPPPRKGGPNRPGDSPRPTIPARLPKQGFPTSAPSDTVPLFRRLQSFRSLGAVPQTTGDRGDDDRCRDWRPGLSGRADRPHCPDRRLPQSLHRPPDRGGRAGADTLCRQWATARGIPVETIPADWTEHGWAAGPVRNRAILDRKPGLLVVFTGSPEAEDFARLAAERHLLVFRWPRNPPPPAPSTDGTTVTG
>NZ_CP011270.1|WP_156514432.1|2977619_2978048_-|carboxypeptidase-regulatory-like-domain-containing-protein
MLAMRRTVFATLLLLLPACSGRPADQPALGVVSGQVRLDGQPLADATIFFSPEGGGRTSVGRTDAEGRYALNYVGQEEGAKVGKHVVRVTTSQEVANPKTGRSMHTTEKVPRQYNDKSELTRDVAEGANTIDLELTSAGPKK
>NZ_CP011270.1|WP_075093129.1|2978282_2979239_-|DUF1559-domain-containing-protein
MRARRRGFTLIELLVVIAIIAVLVAILLPAVQQAREAARQTQCRNHLKQFGLALHSYHETHGAFCPGVVIQQTGSTQGNWSWGSYLLPFVDQAGMYNKLRVGDLRLTQAIADTTPGGLRELLQKPLAVYRCPSDTGPMLNSYHLINSVPTTLSNYVASNASRSLRLDPGPLSSTGSVTASNGMFHANHCVSIRDVTDGTSNTIALGERAWVLSATPVNAALAFGIQSNTEAVSANNTGMIQAFGCGYVLVNSATSTSGPSNYMRNYSSMHVGGANFVMGDGAVRFLSENLDHNIATAQCDSLTEALMGIDDGKIIGEF
>NZ_CP011270.1|WP_075093130.1|2979596_2980256_+|sigma-70-family-RNA-polymerase-sigma-factor
MDPSRSPEHATEEPLTDPEGCRAAAEPAGSEPPSPSFPDGDPPGGAFAGLIVKHDRALLRYIMTLIPRRDDAEEILQRTAATLWEHFPQYDRTRPFLPWALRFAYFEVLNFRKEMARDRLVFREDVLALIAETRGQLEPELDARRAALRSCLDRLAPADLSLLRRRYCDSSSVGTLAEEAGKTAKALYRRLDRIRELVWECVTRRMAHQAPRPEEGLST
>NZ_CP011270.1|WP_082846141.1|2980252_2982064_+|hypothetical-protein
MSRDMSRSDDPRGPAAGRAVLRQLAEGTLPPAEFERLESALRDDAAARAEYVRYMDHEAGLYEEMSFRGEDLPRPAGDPNEGAAEGTARRRRMRWGQGLVALGALATLIVAGLSRLPGRNEPTRFMEARLKGLEDAAVVTHASGIVQSPGDRPLVMGTRLKPGILELRQGEVQIDFLSGARVLLKAPAELHLLSSTAATLVSGSVGARVADGAEKFVLGTPDAAIVDLGTEFAVNVDRSGDSQVRVYDGEVEVSLLGEDGSTVFSQRLKEMETVKIDRSTRSVRAVDLPDSMFVTVREIDRSSLNVTPAYAASIREAKPFLYWRFEESPVDAATGERRLRNEAGDGPGGRIVVDPAEPEAIRIEDGAVRFSDARRSRYLVADAPLEKINEGAFTIELWLKSETFHWGSIASLVVPGFRGGGDKHMALIELAHGTKMVHKPSVVRFLHRHPPGGHNFGWNLFGRDTCMPGEWTYVVVVKEPDELRLYVNGALVRSIRGAETAGNDSDPYVFTMGQMGFHPTMRKFQGMVDELAIYRRALSPQEIREHYWTMMAGNGAKADEGPVARNASEGRGILPAQAASGSGTPPSGRRGSGLTSMASASLR
>NZ_CP011270.1|WP_075093132.1|2982113_2983175_-|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH
MSESEPPRPPRRPRYRGTHPRAFGEKYKELHPDQYGDEVAKVLESGKTPAGTHRPILVEEILEVLAPQPGEVAVDCTLGYGGHARALLAAVSPGGRLLGIDADPIELPKTEARLRELGFPPEALVVRRMNYAGAAQFIAEAAPERADLLLADLGLSSMQIDDPARGFTFKADGPLDMRMNPSKGSSAAQLLSTLTPDRLARLLADNADEPLAVPVASAILQAHRRTPLTTTRALADIVFTAAARLPRGEDDEPESTVRRVFQALRIAVNEEFKTLDTFLKRLPECLKPGGRAAILSFHSGEDRRVKQAFKEGLQSGLYSSIAPDVIRPSPQERRANPRSNPAKLRYAIRAATT

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Crispr_ID: NZ_CP011270_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011270_3

4285067-4285162

Orphan

Consensus_repeat	Method
GCCAGATGGGCCAGCCCTGCGTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011270_3

>merge|NZ_CP011270|3|4285067-4285162|CRISPRCasFinder
GCCAGATGGGCCAGCCCTGCGTCGCCGACGGCGGTCTTCTCGAGGTGCAGCTTTTCGATCGTCTTGAGGCCTGCCAGATGGGCCAGCCCTGCGTCG

>NZ_CP011270|3|3|4285067-4285162|CRISPRCasFinder
GCCAGATGGGCCAGCCCTGCGTCG	CCGACGGCGGTCTTCTCGAGGTGCAGCTTTTCGATCGTCTTGAGGCCT
GCCAGATGGGCCAGCCCTGCGTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011270.1\|WP_075093996.1\|4299412_4299637_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131625
NZ_CP011270.1\|WP_075093992.1\|4291976_4292426_-\|transporter	unknown	unknown	gnl\|CDD\|377444
NZ_CP011270.1\|WP_075093981.1\|4270395_4272246_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239657
NZ_CP011270.1\|WP_075093993.1\|4292514_4293069_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011270.1\|WP_156514546.1\|4288354_4289761_+\|transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP011270.1\|WP_075093994.1\|4293204_4298049_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223021
NZ_CP011270.1\|WP_075093983.1\|4279607_4280594_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|226145
NZ_CP011270.1\|WP_075097155.1\|4280969_4281839_-\|sugar-transferase	unknown	unknown	gnl\|CDD\|274398
NZ_CP011270.1\|WP_075093980.1\|4269431_4270319_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011270.1\|WP_082846273.1\|4285421_4286687_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|336409
NZ_CP011270.1\|WP_082846276.1\|4299594_4299933_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|368240
NZ_CP011270.1\|WP_075093984.1\|4282222_4282585_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236766
NZ_CP011270.1\|WP_156514549.1\|4283932_4284496_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011270.1\|WP_075093982.1\|4272348_4279059_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377643
NZ_CP011270.1\|WP_082846271.1\|4283300_4284044_+\|zf-TFIIB-domain-containing-protein	unknown	unknown	gnl\|CDD\|379195
NZ_CP011270.1\|WP_075093991.1\|4290036_4291461_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|180579
NZ_CP011270.1\|WP_075093979.1\|4268533_4269295_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378820
NZ_CP011270.1\|WP_075093985.1\|4282776_4283265_-\|DUF309-domain-containing-protein	unknown	unknown	gnl\|CDD\|377120
NZ_CP011270.1\|WP_075093990.1\|4287034_4288282_+\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP011270.1\|WP_082846275.1\|4298003_4299332_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859

Protein	Function_ID	Function_description	E-value
NZ_CP011270.1\|WP_075093996.1\|4299412_4299637_+\|hypothetical-protein	gnl\|CDD\|131625	TIGR02574, hypothetical_protein, putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome. [Mobile and extrachromosomal element functions, Other].	1.61503e-07
NZ_CP011270.1\|WP_075093992.1\|4291976_4292426_-\|transporter	gnl\|CDD\|377444	pfam05025, RbsD_FucU, RbsD / FucU transport protein family. The Escherichia coli high-affinity ribose-transport system consists of six proteins encoded by the rbs operon (rbsD, rbsA, rbsC, rbsB, rbsK and rbsR). Of the six components, RbsD is the only one whose function is unknown although it is thought that it somehow plays a critical role in PtsG-mediated ribose transport. This family also includes FucU a protein from the fucose biosynthesis operon that is presumably also involved in fucose transport by similarity to RbsD.	4.06484e-37
NZ_CP011270.1\|WP_075093981.1\|4270395_4272246_+\|hypothetical-protein	gnl\|CDD\|239657	cd03685, ClC_6_like, ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.	0.00058245
NZ_CP011270.1\|WP_075093994.1\|4293204_4298049_-\|hypothetical-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	2.1972e-10
NZ_CP011270.1\|WP_075093983.1\|4279607_4280594_-\|amidohydrolase-family-protein	gnl\|CDD\|226145	COG3618, COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	4.57777e-55
NZ_CP011270.1\|WP_075097155.1\|4280969_4281839_-\|sugar-transferase	gnl\|CDD\|274398	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP), E. coli WcaJ, Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes, such as Sinorhizobium ExoY and Lactococcus EpsD, lack the N-terminal domain and are not found by this model.	4.00555e-96
NZ_CP011270.1\|WP_082846273.1\|4285421_4286687_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|336409	pfam06445, GyrI-like, GyrI-like small molecule binding domain. This family contains the small molecule binding domain of a number of different bacterial transcription activators. This family also contains DNA gyrase inhibitors. The GyrI superfamily contains a diad of the SHS2 module, adapted for small-molecule binding. The GyrI superfamily includes a family of secreted forms that is found only in animals and the bacterial pathogen Leptospira.	5.40932e-49
NZ_CP011270.1\|WP_075093990.1\|4287034_4288282_+\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	4.29301e-07
NZ_CP011270.1\|WP_082846276.1\|4299594_4299933_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|368240	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE. ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralized by the antitoxin ParD. The family also encompasses RelE/ParE described in.	8.52603e-06
NZ_CP011270.1\|WP_075093984.1\|4282222_4282585_+\|hypothetical-protein	gnl\|CDD\|236766	PRK10811, rne, ribonuclease E; Reviewed.	0.00987021
NZ_CP011270.1\|WP_075093982.1\|4272348_4279059_+\|hypothetical-protein	gnl\|CDD\|377643	pfam06283, ThuA, Trehalose utilisation. This family consists of several bacterial ThuA like proteins. ThuA appears to be involved in utilisation of trehalose. The thuA and thuB genes form part of the trehalose/sucrose transport operon thuEFGKAB, which is located on the pSymB megaplasmid. The thuA and thuB genes are induced in vitro by trehalose but not by sucrose and the extent of its induction depends on the concentration of trehalose available in the medium.	2.6984e-22
NZ_CP011270.1\|WP_082846271.1\|4283300_4284044_+\|zf-TFIIB-domain-containing-protein	gnl\|CDD\|379195	pfam13453, zf-TFIIB, Transcription factor zinc-finger.	0.00022436
NZ_CP011270.1\|WP_075093991.1\|4290036_4291461_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|180579	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_CP011270.1\|WP_075093979.1\|4268533_4269295_+\|hypothetical-protein	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	0.000865498
NZ_CP011270.1\|WP_156514546.1\|4288354_4289761_+\|transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	5.54389e-07
NZ_CP011270.1\|WP_075093985.1\|4282776_4283265_-\|DUF309-domain-containing-protein	gnl\|CDD\|377120	pfam03745, DUF309, Domain of unknown function (DUF309). This domain is found in eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.	1.82135e-16
NZ_CP011270.1\|WP_082846275.1\|4298003_4299332_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	4.66469e-143

>NZ_CP011270.1|WP_156514549.1|4283932_4284496_-|hypothetical-protein
MRLVSSLALLLTAILTASPELIADDKEPAKPKKPAVEMNDAEKAFAELMTGADLVGSFSVDGRKGTPKEDRYTISKAEKVKDGKWMIHSRVKYGDVDVVVPVPVKVDFAGETPVLSVRDLSIPLLGKEFGACILFDGERYAGTWSHGKVGGHMWGRIERTRTESSVLPNPDPAGRDKPEKPASAPKE
>NZ_CP011270.1|WP_082846271.1|4283300_4284044_+|zf-TFIIB-domain-containing-protein
MADSGDARNGGPEGGFADSCRGRDVGLRHTLASQRMSPHCHTCGAPVNTLVSAGRLSCDYCGTVHNLRPEALSSDRVSWINEEADHACPNCRIPLSRALVDAEKVEACRQCLGILMVREGFSTVIESRRSLFRGTEVAPVLYDPRALEHSLDCPACQKRMETHPYYGPGNVVIDSCHACALIWVDTGELTQIEKAPGRRGWEPEAAAVPADYSFGAEAGFSGLSRPAGSGLGNTLLSVLVRSILPHM
>NZ_CP011270.1|WP_075093985.1|4282776_4283265_-|DUF309-domain-containing-protein
MRPPYTYVPGKKPHPTRDPAGHSYGSPERSCVAPDPLNPGACPAFREGLDLFRAGYYWEAHEAWEAVWNAAGRRGAVADFLKGLIKLAAAGVKVYEGLPEGVRRHATRARELFEETGSELGETPFGLSVSALVSLCDHLVESPPAKPAEPAGQPVALWSLEG
>NZ_CP011270.1|WP_075093984.1|4282222_4282585_+|hypothetical-protein
MHKVKEADPELVVSRRDRNDRRIRLDRRRPKDPEYKAPERRNDDRRTVERRRQIDPTTCERDYQPDEVEFMKAMDDYKRRSGRMFPTWSEVLEVIRDLGYRKVAERSQTYDAVPVTAEAD
>NZ_CP011270.1|WP_075097155.1|4280969_4281839_-|sugar-transferase
MTAQTTFSTSSSAAANADAPNGSPDLASYAAPAAAEIKPVLWLAKVPGGDGRQNIHDLGATTRFLKRAMDVVLATVMLIVLSPLMLLVAIAVRLTSRGPVIFRQTRVGLNLRTVGPDRRTRSDAPPAETGERRVPGSDRRQAQAYGRHFTLYKFRTMRTDAEKNGAQFAVAGDKRVTPIGRFLRKTRLDELPQLWNVLKGEMSLVGPRPERPEFIKKLSDEVPRYLDRLGLQPGLTGVAQIENGYDNDIEGFRRKVAYDLVYLRNCSAMNDLRILLRTISVVLKGSGAL
>NZ_CP011270.1|WP_075093983.1|4279607_4280594_-|amidohydrolase-family-protein
MLSRRDFLQSSVLSTAALAAGSTLAAEQDPRALIVDTHQHLWDLKTLHLPWLSGAPEILNRTYHLKEYAEATTGLRVKSVYMEVDVARDELAIEARHVIDIAKGGQSTMAAAVIGGSPESDAFPGLIGSALNSPYVRGVRRVLHSDATPKGTCLTKTFIDNIRLLAPQDHSFDLCMRPTELLDGVKLTEQCPSNRFILDHCGNGDPRAFHKNLDPDKPASHTADEWKRGIDGFAARPNVICKISGVIAFLPKGKPAAETLAPIINHCLDAFGPDRVVFGGDWPVCLLGGSLRGWVDALTQIIRERPADQQRKLWSGNALKHYRLTAGT
>NZ_CP011270.1|WP_075093982.1|4272348_4279059_+|hypothetical-protein
MVLVRLLAVLVCLVNCGAALAAGPVRKIVLIAGPKSHGPIGNGIHDYPWSVKLLKVMLDNSNVAGQVKVEYHLDGWPKEAATLDDADTIMVVSDGRDGDKYEEMPPLQGPERVAQVQKQIDRGCGFLTFHFSTFAPDQYAAQVLDWTGGYFDWEENGERKWYSAINTQDAKVELPHPDHPVCRGVGPFQMKEEFYFNIRFSQVTPLLAVPSLPGRENDGKVVAWARERASGGRGFGTTCGHFYDNWRNEAFRKLILNAICWTARVDVPEGGVVGKFYTHAEITAALAGIRGTERAVVDDKPIRVLILAGNDAHKWHNWEKTTPVIQAQLEKDPRVRVEITHDPEGAFPSLKEKCDVLVQNSYANWHDKTPLSEKARSGLVSFLEGGGGLVLVHFGNGAWNFSLPMGGESDWPEYRKIARRVWNHHGEGEAKSGHDAFGRFSVAPTSTSHELTRGLKPFEVDDELYFRQDGAEPIEPLITALSKVTKRAEPLAWTYTYGQGRIFQTLLGHSEKTYAAFEPCEMLRRGVAWAARRKVVELDPQSAPPEAAAPMAAAAPAVPPGRAVLGEGRFGRALDARTGGLFLPATDPMRNAPVSVSCWTKLDGKTGFNILIASEEKSSASHWEMYSYAGSGVFSVYMPGRGGEYKTTADIADGQWHHVGMVFEAKRLRLYVDGHMALDKAVPEPVKTSTGGPIAVGRLVEAGIGCAGLVDDLTIRGGVHPFETLPTEPAKADDTTLGVWPFDELSENGTSPDRSSGKRDAASKPVLSALEEAKRKAAAAPLPAKPNHWGKEAVGFDWTEQDSVDNRWQQTDIGPFLAYTVPLPEGPVRKGLAIKVGPGWAASGETPAAPRAVALYDTQHMQLRGVWTGGFLRFDPARYGIIGMPKIDGVLQFSSRESPAWSIAGAKPPAKGPVVVQYLGMSDQADGPRLRFRVGATPVTERIAVAGTRENPVLVRTITLDPHEAPFELTLFDAPAAKLEMAQQGSITRLQLEQRDRRVSLVIRAEVALDPITQEGGKTIRLGVRIPPSTTRQTIVIGCRSALATAASDEASLAKAVETTSSGATTAAPRRWGDGLVTAGQLGADQQGFALDTLALPFDNPWKALLFTTGVGFFDRTARAAATPASLHGRPDLAVCTVHGDVWTVSGLDAELKSLRWRRFATGLYQPLGLVVVGDDVYVLGRDQITRLRDTDGNGEADEYDCVNNLYETSAGGHDYVACLERDPGGDFYLVHATQGVLRASGDGRALDVVASGLRNPNGMGFAMVDGKPVVTAAPQEGEWTPGSAIYRVRPGEHYGYPGPRGAKGTITPTLALEEPLAKLGVGAPYCWIPRRTDNSCGGQTWIDPELWGNLGRHWLHHSFGQCTTMLVVPDGSFPDLQGATVPLPLTFDSGICRGRFRKEDGHLYAVGLRGWVTSATQDGCLQRVRRTETPTGLPVAWKGFRNGLEIQFAEPLDRGTAQDPGSYHVEAWNYRYSVAYGSPDWKVSREAEEGHDELVVKSATLLRPDTVFLEIDPLPVACQATVQYALAHASGAPIRNTLAATLHRVPDATVDPALLNRERAPGQLAEAEQARLRPGILVRWQQGDRRDVERRRMAAIVSTAGEPATPFLEPGPVSAVLEGYLKVPLRGHYDFRVEGAAKGTAFEINGQPVSLVSRSDGRSAATESPVALHAGYNRVRLSLAEGDHPALRLFWSAPEFAEEPVPPTVLWCNGEEAELVRAEQLRRGRDLYLDRLCARCHGGETSPAAPLEMGAVASTLKGRRQQLRPAWLRRFLRGDGSSVESHSRMPQLYDKTKPDDEVEVMIVAAMLGARASGGEPEPRPALGSAEQGRVLYEDLGCIACHRLGGDDSADSRRSLAEVGEKFHPAGLIAYLQNPHSDDPWSGMPAFGLSAAEAADLAALLLPEGYDWHEKPRPTDGPASVSVSKEKDLSFGTLWRGRGCNRCHELERPAEEPADQWVPDRRQPVAIRDVTKGCLAGLPTRASRWGQIPDYGFSAEDRGALSTFLSAEGAKTLTRDTAVDASRRLVERLNCQACHSRDSAVSPRGGLVAEESDRGLAPETLPTLTWAGEKLHTDWIAGLLEGKHPQRPRPWLKARMPAFPAYAGVLARGLAAEHGLAPSSGRDSKPQDPGLAEQGLRLVDKSALDCRQCHGLGDQPPTGDAKTLLAPGINFALVPARIQPEYYGRFTLDPPRFDVTTRMPKLAIDGRTTKVKEILDGDARKQFQAIWQFLVENSGR
>NZ_CP011270.1|WP_075093981.1|4270395_4272246_+|hypothetical-protein
MPFFERIRSISRGHRVGAGAILLGVLATYYGLAIVSSPTGPAIAAHSWTVAARGLVGLKTPTVEEMEPVDQARFWLGKIKSLDSQDPEVLCGAAWILSEPNPRHIHRKLKRPSFPFDQTSAGLVPPVIFDEEAIRRAEKEFETLCQGTRLDLVVRATSLQPENRELWRARARLLSRSGIFAGKESSRSDHWFAALSEGARHDPENSLYDLMVAVQRFREGARLDFAQERVELQIHDDAKFQDGLRHLEAALARTHLQFGCDRFLWCWKFVSQADDVRADPVKSLAGLTMSVQEPFLLREITQWQAARAHLVAEQKDLKQAAKILSETRQIVDQCAVREGNDVILATIRPVVLRTVLGTQVFFGERYPGIFTPAELEAIRREQQSVMDVEKLLLKRTDLPAQTPEGLEKGVGTSLGVLASHVPASLAPLLVLCGAAWGIGKAFGRRASPNPVASIAWWQIALLWGVALASTVATAFAMTFFSRSGGTAGHLGVLRDVPLERLRRVAVALVTWANFPLEWLLPVGVLAGLALWRWGSSRLSRRQQDLAEPRPTLRHRIVGFARGGVRCLWPVAVLGLAFHLLFLPTLIRKIDARDRDYPLQLEPQTRWNEVDQRLKSP
>NZ_CP011270.1|WP_075093980.1|4269431_4270319_+|hypothetical-protein
MDYRDDADSSRTIFDEEPAPPPPPPPPSGCWKWFRRFLLFCFVMFLLVAAGIGWLYWTTHQVPEFYQEALAVETPERAEQRKVEAVQLQQEVEQLGETIQAGQAWDYEITQDQINAWLAEELPKHPGEWPRELQNPRIAIEEGRIQLGATVDTPIWKGVGTLALRPRFEPPQTFVFDIDAVRVGQLAIPIEQIRAELPQLEEGSGIERDPRTGGYRLRYRLKDKELKTLRLTAMEVAKGRLRFKGEALPVPDQPAEPGEDPSAENMPEGKRPRETPPDDSSDKPTEKTPAPTPDR
>NZ_CP011270.1|WP_075093979.1|4268533_4269295_+|hypothetical-protein
MRQDLLSPERLEQGYVIVLPGIEGHSFWNKSIVNGLVDAGLPYGIEIHDWTFTRHIPLINLRFGRHHRSQSDIIAGKIVRYREQHPDAPLYLIGHSGGGAMTLYSLAKLPEGVNVTGGLLLGPAISPVYDLQPALQHTTRGLWNFPSVFDVLFLALGTTIFGTIDGHHWAAAGCLGFRGTECPTGEACLDPHYREIPFRFEMSRHWNFGGHFGYVNRRFVAHWLAPILRGGDVPRHALGRIARRVVEDLGTRV
>NZ_CP011270.1|WP_082846273.1|4285421_4286687_+|helix-turn-helix-domain-containing-protein
MSGPIPESASRSSDSCRFSLVKLRKNALPGGSYQNRPLCCPSPASVAARPTAAFACLGDTRRKKNRSGGRGSGRAAPVGRWHHCLRGAGPGSRWDAFENLRGSAGASPSRDRGELAADSQEQSGTPCSLPARVPAMSPTRAAYADRILRVQIHIQQHLDDDLSLDRLAGIAGYSPYHFHRIFRGLVGESTDDYVRRLRMEKAAQSLRYRERSVLEIALDSGYGSPEAFSRAFQRNFGILPSEYQAMEFPPTSLKEQIMATVAYTKADVRIEQLPPLRIAYIRVVGRYCTETLGPAFGRIGKLAHEMNLFRPDTKCLGVYYDDPQVTPPEKQRADVGITVDESFRPTGDVQVQTIPGGPHAVLTHKGPYDTLSEAYRWIYAVWLPESGREPGEAACYEYYLNDARTTPPEELLTNICVPLAP
>NZ_CP011270.1|WP_075093990.1|4287034_4288282_+|IS4-family-transposase
MLPAEVLERFVERCPAAVMVRAVLENLLRPERLDEVFQRAAQRQYSRQLLFSQLVAIMSAVATRSQPSVHAAYLAAQDKLDISPQALYDKLRRLEPAVTAALVRETARDAARAIDALPGLRPPVLTGGLKTYDVYCVDGNHLTSTEHRLAELRTTREAALPGQTLALLDLRRGLITELVPGEDGHAQERSLVPELLERLRKGMVLVADRNFCTSRILFGIVEHAASFVIRQHRSTLSWEREGKRRRIGRTATGMMFEQTLDLNYEGQTLPVRRLTIELDGPTNQGESEVHILTNLPAETVPPGEVVEAYRLRWTIEEAFQCLTEVLRCEVETLGYPRAALFSFAVAVVAWNTYAVVKGALKSVHGWETIEATLSDYHLMHDVLLTHCGLEIAVEASAWFWHQGLCPSAVTMIGFT
>NZ_CP011270.1|WP_156514546.1|4288354_4289761_+|transposase
MEGFCREVAARLPLAQAVMRLFRWICEEEFLAEVFRQHRGRSYEKLLTFPQMVQLVCDALLQHHGSVRQSFARAKEEGEIDCGIHSVYRKLADLPLSLSMGFFHETTKRLQQVFPQEVNYCPIPPSLGEFEILCHDGKTIKHVQKRLKVLQGISGSLLGGRLVVSQSYRTGMAVALSASEDGESGETRLLPEALRQTREVIARTRLHVCDRGYCGSPQMNACQEHGDHFFLRFHKQRLAFHENGDWEPAEGMDRYGRSYTEDWGWLGGPDHPERRPVRRIQLHRPGIKDELILLTDLEDPDQYPADDLLEAYLKRWNIERMFQQVTEVFSLESLIGSSPKATVFQASFCFLLYNLIQVLRAYIAEGQEIESVETISSELLFVDVHRQLNGWTELLDVSQTVDQLPPLMSVSDVIDHLRELLGTRWTDRWWKSPSNTHRSAKVKAKKPVRGGHAAVFRILQTQKVRRKT
>NZ_CP011270.1|WP_075093991.1|4290036_4291461_-|dihydrolipoyl-dehydrogenase
MPAAPTHAQLVVLGGGPGGYPAAFEAADHGMDVVMVDQDAQPGGVCLNRGCIPSKALLHVAKLIHEAHESEAWGVTFQPPKIDLDKLRSFKSDVVTKLTGGIRQLSGARGVKLVQARGKFVNNKTLELAHADGTTSQLTFDKCIVAVGSRPAMPKIFDIGDERVMDSTGALNLPEIPGTMLVIGGGYIGLEMGSVYAALGTKITVVEALPTILAAADRDLVAPLQKRLAGQFAAIHVNTKVKSLKASPEGIVAELEGEGITSPQTFNRVLVSVGRAPNGKGIGLESTKVVVNDRGYIQVDRNMRTAEPNILAIGDVAGEPMLAHKATREAKVAVETLLGEPAQFDNIAIPAVVFTDPELAWCGITEAEAKAAGKEVIVTKFPWAASGRAQTIGRTEGLTKLIIEPKTERILGVGIVGPGAGELIAEGVLAVETAAVARDLAETIHAHPTLSETIMEAAESAFAQATHVFRPKRK
>NZ_CP011270.1|WP_075093992.1|4291976_4292426_-|transporter
MLKHDLIHPEINMILGRAGHHSKVLIADGNYPAYNTLGPNAELVCLNLSPGLVSCTQVLRALASAIPIEAANTMGIPADDPYASQGDPPIWNDYRGILKECGLPIELQPIQKWDFYDAVASRDHVLTIQTGEQALWANLLLTIGVRKPS
>NZ_CP011270.1|WP_075093993.1|4292514_4293069_-|hypothetical-protein
MNADEILRAIQTDPRYQRNLDWGEPRPGHPEGTVRAHIAELEQNLEKLRPRLTEEECGKLRLLIHTHDTFKGEAAHGVAITHPRSHASLARAFLAEFVTDQDILAMVQYHDEPYALWRQARHRDGAVNETRLQALREAIGDWTLFLAFNVIDGCTEGKDGAPLRWMFQTLGGSVSSRIMEADIL
>NZ_CP011270.1|WP_075093994.1|4293204_4298049_-|hypothetical-protein
MSSTAGSRSGSLPGSSSKKYVDFDEFVAFQLEKARSGIRANDLLMGAVGLGVFVASYLFVFLILDQWVFAQGVGTALRVAMWLGMATVVVAWIAWKVAGPFLRRVTSLFAAKEIEAAHPELKSNLLTLIDLRQAGREVSPQILQAIEKRAAVRLSEMDIDHAIDRRTLMRWSYVLLAIVAGICVYTMLTPKRLGPSLVRALIPITNVSVGTQTRIEKVIPENANVLSRSSVEIIAQLTGKIPEQVKVLYSTEDRRFVDEPLILADTDEGLNRFRGVLSGERAKGLMQSVTYRVEAGDAISPTYTITVTQPPSATVADVAYDYPTYMGLQDRTQANPTIDGWEGTRVTLRATTNRPVQIARVLFSDTEDTSLKAEELPMKVDGGTNLSATWMLQFRSDGTYPHFYRIFVKTEDGSEDPAPVLYPIRIRQDLAPKVEIIHPQSDVSAPANGSVQVAYQASDPDFLLKNTVLRYEKRGQELPEADYVFEAPPLKPSVRGVATIDLNRFSVAPGDKLTFWLEAKDNLEPFGNRKENVSKSARLNINITDAVDPKQAQQKAEEEKQRAKDELDQAPPPPQEDRGNPQEQRPDEQRPEEGMSEDGMPQDGMGEKKPDEQRPGGGEADPGENPNADPGRNDDNRPMPGDEGMDNKPGEPNGGEGQPKDEPRKDDGQGQKGAGQGGTPQDPGMGEKRDNGPRDPKMTDDPKNSDADRTQQNGTTGQRGGPGTGGQPQREGNQGEGQPQPQRDRTGNDPSSGAGQGERNSQPGGGKSQPQREPGGGNNGPQTPMDRAPDDVALERLLNYSDKKGPEADPKPPQPESNMNQGSQESSPGASRGSDSSGSRSNDAGRGQEPMNGSDPKANPEKGPNQEKGPGSRNGGGPMPSAPDRGNGENEPGKSPMKEPGGGEMSPKGTNPPGRETERPAQTPSDMEKNGPREPKPRTGSDPSAPPERSSDGNNGMTGEPSAGTKGTNPPPAAGQEKGPGTPKPNNGAKPEGRDPSTMGQDAPMPGTGERPMPSDAGTGEKPAGEMPPGGKQTGQKGPGNTGTPMKSNMPGEAGDTGEKPMGPGEAPMGPGENPMPGEGADNAPGRNPQTNGRKPDGTGKPDGTGKPDGTGKPMAMEKNAPDGKPGETEPNANDAGAKPNATEPGKEGPMPGTGEKKPGPGGNTGEKRPQPGEGTGQKAPSQGGMGEPKGQPGAGEKPMQDDKGRPAGGDPQANPMGAPEQPSANSKDQNAQRSPNPMQGGTGRGQDSAEGQPGGKQRGMGDTSSQPGQEGTPSGEKPGQSDNPSGPPQQGGKPGRESGKPGDSGMPGDSGMPMENGSGADSGKPGTGGKPMPGAGREPGDAGMNDGGEGDPSTPPMGGKASGPKQGGTPKPNNQPGGGGEEKGSEPPMAGQQPGGKKPGNAGGDQPENSGMGPGNAGTQPGQAGNQPGKGMGGDTPGEGGGGAEQGAAGGMGGTQSGPGGGRGGAPPPEGARGAASTPNGPDEGTDLNNRKKSVNLMLNRLQEEIRRGETDPQLLKELGFTENDLQQFLKRLDDQLNKVDVTTPEGQARQRQFEELLRGLNANSTGETRSGGTGPREASGGFGTRRSTPPTEYAESAEAYKKRLLRKKPATP
>NZ_CP011270.1|WP_082846275.1|4298003_4299332_+|glycerophosphodiester-phosphodiesterase
MSPEAIPNGTRRSKTSGPLSPLPTARNGIPPIIVDVRRRENVPKILIGEYVRTIPVVGAAGEISSARRKPRGNREIRAPPGPSGPDLRALRDRSFSVFPDWPLQPTIAPTPGRPWSGRTVRLESRMPTPIVIAHRGASGYLPEHTLPAKALAAGMGADYLEQDVVLTRDGVPIVLHDIHLDTVTDVAERFPGRARPDGRYYAIDFTLEEIRTLLVRERFSHKTGQPVFSKRFPHVASRFTLHTLAEEIAFVQGLNRSMSRTFGIYPEIKQPAFHRREGQDISAIVLRVLEESGYRSKEEACYLQCFDEPETERCRRELKCPLKIIQLLEEKDWKLLLAAPRRGDLDAALAKVAGYADGIGPPVSLLVSEFRADGTFAATELAAAAHHHGLVIHPWTLRRDELPKSVPSFDRQMEILFGELRVDGAFSDFPDLTRQWIDRRMA
>NZ_CP011270.1|WP_075093996.1|4299412_4299637_+|hypothetical-protein
MPISLETLLSRLSTAERLELIDRLWAEIEEESLPSLLSAQQQADLLARRADHEAHPDQVLSWETVKAEMEARLP
>NZ_CP011270.1|WP_082846276.1|4299594_4299933_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MGDCEGGDGGPPAVTFRIELIPAARDDLLAAQEWYESCQENLGRTFRARVDEVLGRLSRNPKLCPLCVEDVRIAKVGRFPYGVVYRILEDAVVVLAVYHLRQDPGKLRRRLN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011270_1	1.8\|2833143\|30\|NZ_CP011270\|CRISPRCasFinder,CRT,PILER-CR	2833143-2833172	30	NZ_CP029833	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed3, complete sequence	486891-486920	5	0.833
NZ_CP011270_1	1.4\|2832879\|30\|NZ_CP011270\|CRISPRCasFinder,CRT,PILER-CR	2832879-2832908	30	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	994780-994809	6	0.8
NZ_CP011270_1	1.17\|2833737\|30\|NZ_CP011270\|CRISPRCasFinder,CRT,PILER-CR	2833737-2833766	30	NZ_CP042915	Rhodococcus qingshengii strain RL1 plasmid unnamed2	183067-183096	6	0.8
NZ_CP011270_1	1.3\|2832813\|30\|NZ_CP011270\|CRISPRCasFinder,CRT,PILER-CR	2832813-2832842	30	NC_008703	Mycobacterium sp. KMS plasmid pMKMS01, complete sequence	129124-129153	7	0.767
NZ_CP011270_1	1.4\|2832879\|30\|NZ_CP011270\|CRISPRCasFinder,CRT,PILER-CR	2832879-2832908	30	NZ_CP023550	Rhodobacter sp. CZR27 plasmid unnamed2, complete sequence	133975-134004	7	0.767
NZ_CP011270_1	1.4\|2832879\|30\|NZ_CP011270\|CRISPRCasFinder,CRT,PILER-CR	2832879-2832908	30	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1397403-1397432	7	0.767
NZ_CP011270_1	1.4\|2832879\|30\|NZ_CP011270\|CRISPRCasFinder,CRT,PILER-CR	2832879-2832908	30	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	230784-230813	7	0.767
NZ_CP011270_1	1.4\|2832879\|30\|NZ_CP011270\|CRISPRCasFinder,CRT,PILER-CR	2832879-2832908	30	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1164697-1164726	7	0.767
NZ_CP011270_1	1.4\|2832879\|30\|NZ_CP011270\|CRISPRCasFinder,CRT,PILER-CR	2832879-2832908	30	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	155226-155255	7	0.767
NZ_CP011270_1	1.6\|2833011\|30\|NZ_CP011270\|CRISPRCasFinder,CRT,PILER-CR	2833011-2833040	30	NC_010492	Arthrobacter sp. Chr15 plasmid pChr15, complete sequence	6550-6579	7	0.767
NZ_CP011270_1	1.9\|2833209\|30\|NZ_CP011270\|CRISPRCasFinder,CRT,PILER-CR	2833209-2833238	30	NZ_KY000043	Agrobacterium rhizogenes strain CFBP1905 plasmid pTi_CFBP1905, complete sequence	13844-13873	7	0.767
NZ_CP011270_1	1.9\|2833209\|30\|NZ_CP011270\|CRISPRCasFinder,CRT,PILER-CR	2833209-2833238	30	NC_011990	Agrobacterium radiobacter K84 plasmid pAtK84b, complete sequence	34130-34159	7	0.767
NZ_CP011270_1	1.9\|2833209\|30\|NZ_CP011270\|CRISPRCasFinder,CRT,PILER-CR	2833209-2833238	30	NZ_KY000058	Agrobacterium rhizogenes strain CFBP1317 plasmid pTi_CFBP1317, complete sequence	78884-78913	7	0.767
NZ_CP011270_1	1.10\|2833275\|30\|NZ_CP011270\|CRISPRCasFinder,CRT,PILER-CR	2833275-2833304	30	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	216173-216202	7	0.767
NZ_CP011270_1	1.10\|2833275\|30\|NZ_CP011270\|CRISPRCasFinder,CRT,PILER-CR	2833275-2833304	30	NZ_CP029830	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence	423984-424013	7	0.767
NZ_CP011270_1	1.10\|2833275\|30\|NZ_CP011270\|CRISPRCasFinder,CRT,PILER-CR	2833275-2833304	30	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	817946-817975	7	0.767
NZ_CP011270_1	1.10\|2833275\|30\|NZ_CP011270\|CRISPRCasFinder,CRT,PILER-CR	2833275-2833304	30	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	6428-6457	7	0.767
NZ_CP011270_1	1.10\|2833275\|30\|NZ_CP011270\|CRISPRCasFinder,CRT,PILER-CR	2833275-2833304	30	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	887582-887611	7	0.767
NZ_CP011270_1	1.10\|2833275\|30\|NZ_CP011270\|CRISPRCasFinder,CRT,PILER-CR	2833275-2833304	30	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	1056840-1056869	7	0.767
NZ_CP011270_1	1.17\|2833737\|30\|NZ_CP011270\|CRISPRCasFinder,CRT,PILER-CR	2833737-2833766	30	NZ_CP030828	Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence	231013-231042	7	0.767
NZ_CP011270_1	1.2\|2832747\|30\|NZ_CP011270\|CRISPRCasFinder,CRT	2832747-2832776	30	NZ_CP049701	Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2b, complete sequence	2214-2243	8	0.733
NZ_CP011270_1	1.2\|2832747\|30\|NZ_CP011270\|CRISPRCasFinder,CRT	2832747-2832776	30	NZ_CP049701	Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2b, complete sequence	297127-297156	8	0.733
NZ_CP011270_1	1.2\|2832747\|30\|NZ_CP011270\|CRISPRCasFinder,CRT	2832747-2832776	30	NZ_CP049701	Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2b, complete sequence	418426-418455	8	0.733
NZ_CP011270_1	1.2\|2832747\|30\|NZ_CP011270\|CRISPRCasFinder,CRT	2832747-2832776	30	NZ_AP014659	Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6a, complete sequence	56176-56205	8	0.733
NZ_CP011270_1	1.4\|2832879\|30\|NZ_CP011270\|CRISPRCasFinder,CRT,PILER-CR	2832879-2832908	30	NC_012987	Methylorubrum extorquens AM1 plasmid p1METDI, complete sequence	101569-101598	8	0.733
NZ_CP011270_1	1.8\|2833143\|30\|NZ_CP011270\|CRISPRCasFinder,CRT,PILER-CR	2833143-2833172	30	NC_011961	Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence	53637-53666	8	0.733
NZ_CP011270_1	1.8\|2833143\|30\|NZ_CP011270\|CRISPRCasFinder,CRT,PILER-CR	2833143-2833172	30	CP003954	Rhodococcus opacus PD630 plasmid 5, complete sequence	57916-57945	8	0.733
NZ_CP011270_1	1.12\|2833407\|30\|NZ_CP011270\|CRISPRCasFinder,CRT,PILER-CR	2833407-2833436	30	MW117965	Synechococcus phage S-H38, complete genome	157286-157315	8	0.733
NZ_CP011270_1	1.15\|2833605\|30\|NZ_CP011270\|CRISPRCasFinder,CRT,PILER-CR	2833605-2833634	30	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	4656531-4656560	8	0.733
NZ_CP011270_1	1.17\|2833737\|30\|NZ_CP011270\|CRISPRCasFinder,CRT,PILER-CR	2833737-2833766	30	NC_020275	Mycobacterium intracellulare subsp. yongonense 05-1390 plasmid pMyong1, complete sequence	25576-25605	8	0.733
NZ_CP011270_1	1.7\|2833077\|30\|NZ_CP011270\|CRISPRCasFinder,CRT,PILER-CR	2833077-2833106	30	NZ_CP021332	Maritalea myrionectae strain HL2708#5 plasmid pHL2708Y3, complete sequence	128498-128527	9	0.7
NZ_CP011270_1	1.10\|2833275\|30\|NZ_CP011270\|CRISPRCasFinder,CRT,PILER-CR	2833275-2833304	30	NZ_CP045120	Rubrobacter sp. SCSIO 52909 plasmid unnamed1, complete sequence	42365-42394	9	0.7

1. spacer 1.8|2833143|30|NZ_CP011270|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029833 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.833

ccaagaccacggcgggaacctctacgccgc	CRISPR spacer
tcagcaccacggcgggaacccgtacgccgc	Protospacer
.**. ***************. ********

2. spacer 1.4|2832879|30|NZ_CP011270|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.8

acgaccgggtgaagcgccgccgcctctgca	CRISPR spacer
accttcgggtgaagcgccgccgcttcggct	Protospacer
**  .******************.** **

3. spacer 1.17|2833737|30|NZ_CP011270|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042915 (Rhodococcus qingshengii strain RL1 plasmid unnamed2) position: , mismatch: 6, identity: 0.8

gcacctgccggcccggtggacactgcggat	CRISPR spacer
ctccgtgccggcccggtgggcactgccgat	Protospacer
 . * **************.****** ***

4. spacer 1.3|2832813|30|NZ_CP011270|CRISPRCasFinder,CRT,PILER-CR matches to NC_008703 (Mycobacterium sp. KMS plasmid pMKMS01, complete sequence) position: , mismatch: 7, identity: 0.767

cggaaccagtcctgcccagcgttctccgaa	CRISPR spacer
ctccgcaagtcctgcccagcgttcaccgta	Protospacer
*   .* ***************** *** *

5. spacer 1.4|2832879|30|NZ_CP011270|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023550 (Rhodobacter sp. CZR27 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

acgaccgggtgaagcgccgccgcctctgca	CRISPR spacer
acgaccgggtgaagcgctgccgccggccat	Protospacer
*****************.******  .

6. spacer 1.4|2832879|30|NZ_CP011270|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 7, identity: 0.767

acgaccgggtgaagcgccgccgcctctgca	CRISPR spacer
gcccgcgcctgaagcgccgccgcctcggca	Protospacer
.*   **  ***************** ***

7. spacer 1.4|2832879|30|NZ_CP011270|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

acgaccgggtgaagcgccgccgcctctgca	CRISPR spacer
gcccgcgcctgaagcgccgccgcctcggca	Protospacer
.*   **  ***************** ***

8. spacer 1.4|2832879|30|NZ_CP011270|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

acgaccgggtgaagcgccgccgcctctgca	CRISPR spacer
gcccgcgcctgaagcgccgccgcctcggca	Protospacer
.*   **  ***************** ***

9. spacer 1.4|2832879|30|NZ_CP011270|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 7, identity: 0.767

acgaccgggtgaagcgccgccgcctctgca	CRISPR spacer
gcccgcgcctgaagcgccgccgcctcggca	Protospacer
.*   **  ***************** ***

10. spacer 1.6|2833011|30|NZ_CP011270|CRISPRCasFinder,CRT,PILER-CR matches to NC_010492 (Arthrobacter sp. Chr15 plasmid pChr15, complete sequence) position: , mismatch: 7, identity: 0.767

gcagtgcgtcgtgacatcaccgccctactt	CRISPR spacer
ccgctccgtcgtgacctccccgccctactg	Protospacer
 *. * ********* ** **********

11. spacer 1.9|2833209|30|NZ_CP011270|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000043 (Agrobacterium rhizogenes strain CFBP1905 plasmid pTi_CFBP1905, complete sequence) position: , mismatch: 7, identity: 0.767

cccactgcttctcaaccgtgatcccgaagt	CRISPR spacer
cgccgagcttctgcaccgtgatcccgaaga	Protospacer
* *   ******  ***************

12. spacer 1.9|2833209|30|NZ_CP011270|CRISPRCasFinder,CRT,PILER-CR matches to NC_011990 (Agrobacterium radiobacter K84 plasmid pAtK84b, complete sequence) position: , mismatch: 7, identity: 0.767

cccactgcttctcaaccgtgatcccgaagt	CRISPR spacer
cgccgagcttctgcaccgtgatcccgaaga	Protospacer
* *   ******  ***************

13. spacer 1.9|2833209|30|NZ_CP011270|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000058 (Agrobacterium rhizogenes strain CFBP1317 plasmid pTi_CFBP1317, complete sequence) position: , mismatch: 7, identity: 0.767

cccactgcttctcaaccgtgatcccgaagt	CRISPR spacer
cgccgagcttctacaccgtgatcccgaaga	Protospacer
* *   ******  ***************

14. spacer 1.10|2833275|30|NZ_CP011270|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.767

ggatgcggaggggggcaacatcttcgaagt	CRISPR spacer
cgagatggacgagggcaacatcttcgaagc	Protospacer
 ** ..*** *.*****************.

15. spacer 1.10|2833275|30|NZ_CP011270|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

ggatgcggaggggggcaacatcttcgaagt	CRISPR spacer
cgagatggacgagggcaacatcttcgaagc	Protospacer
 ** ..*** *.*****************.

16. spacer 1.10|2833275|30|NZ_CP011270|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.767

ggatgcggaggggggcaacatcttcgaagt	CRISPR spacer
cgagatggacgagggcaacatcttcgaagc	Protospacer
 ** ..*** *.*****************.

17. spacer 1.10|2833275|30|NZ_CP011270|CRISPRCasFinder,CRT,PILER-CR matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 7, identity: 0.767

ggatgcggaggggggcaacatcttcgaagt	CRISPR spacer
cgagatggacgagggcaacatcttcgaagc	Protospacer
 ** ..*** *.*****************.

18. spacer 1.10|2833275|30|NZ_CP011270|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 7, identity: 0.767

ggatgcggaggggggcaacatcttcgaagt	CRISPR spacer
cgagatggatgagggcaacatcttcgaagc	Protospacer
 ** ..*** *.*****************.

19. spacer 1.10|2833275|30|NZ_CP011270|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 7, identity: 0.767

ggatgcggaggggggcaacatcttcgaagt	CRISPR spacer
cgagatggacgagggcaacatcttcgaagc	Protospacer
 ** ..*** *.*****************.

20. spacer 1.17|2833737|30|NZ_CP011270|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030828 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence) position: , mismatch: 7, identity: 0.767

gcacctgccggcccggtggacactgcggat	CRISPR spacer
ccgcctgccggcccgctggtcactgcgccc	Protospacer
 *.************ *** *******  .

21. spacer 1.2|2832747|30|NZ_CP011270|CRISPRCasFinder,CRT matches to NZ_CP049701 (Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2b, complete sequence) position: , mismatch: 8, identity: 0.733

ttggcttctgcgagtgtgggaacgcggagg	CRISPR spacer
cgggcttcgacgagtgtgggaacgcgcgcc	Protospacer
. ****** .**************** .

22. spacer 1.2|2832747|30|NZ_CP011270|CRISPRCasFinder,CRT matches to NZ_CP049701 (Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2b, complete sequence) position: , mismatch: 8, identity: 0.733

ttggcttctgcgagtgtgggaacgcggagg	CRISPR spacer
cgggcttcgacgagtgtgggaacgcgcgcc	Protospacer
. ****** .**************** .

23. spacer 1.2|2832747|30|NZ_CP011270|CRISPRCasFinder,CRT matches to NZ_CP049701 (Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2b, complete sequence) position: , mismatch: 8, identity: 0.733

ttggcttctgcgagtgtgggaacgcggagg	CRISPR spacer
cgggcttcgacgagtgtgggaacgcgcgcc	Protospacer
. ****** .**************** .

24. spacer 1.2|2832747|30|NZ_CP011270|CRISPRCasFinder,CRT matches to NZ_AP014659 (Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6a, complete sequence) position: , mismatch: 8, identity: 0.733

ttggcttctgcgagtgtgggaacgcggagg	CRISPR spacer
cgggcttcgacgagtgtgggaacgcgcgcc	Protospacer
. ****** .**************** .

25. spacer 1.4|2832879|30|NZ_CP011270|CRISPRCasFinder,CRT,PILER-CR matches to NC_012987 (Methylorubrum extorquens AM1 plasmid p1METDI, complete sequence) position: , mismatch: 8, identity: 0.733

acgaccgggtgaagcgccgccgcctctgca	CRISPR spacer
cacacccggtgaagcgccgccgcctcgctc	Protospacer
   *** *******************  .

26. spacer 1.8|2833143|30|NZ_CP011270|CRISPRCasFinder,CRT,PILER-CR matches to NC_011961 (Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ccaagaccacggcgggaacctctacgccgc	CRISPR spacer
gcaagaacacggcgggaaccgctatcggac	Protospacer
 ***** ************* ***.   .*

27. spacer 1.8|2833143|30|NZ_CP011270|CRISPRCasFinder,CRT,PILER-CR matches to CP003954 (Rhodococcus opacus PD630 plasmid 5, complete sequence) position: , mismatch: 8, identity: 0.733

ccaagaccacggcgggaacctctacgccgc	CRISPR spacer
cgcgcgacacggcaggaacctcgacgccgc	Protospacer
*  . . ******.******** *******

28. spacer 1.12|2833407|30|NZ_CP011270|CRISPRCasFinder,CRT,PILER-CR matches to MW117965 (Synechococcus phage S-H38, complete genome) position: , mismatch: 8, identity: 0.733

gatgcacaagaactccctccacctgatgtc	CRISPR spacer
gtaattagagaactccctccacctgttgtc	Protospacer
*  ..  .***************** ****

29. spacer 1.15|2833605|30|NZ_CP011270|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.733

tcttccagttcggtccgatgcgattcagtt	CRISPR spacer
gaagccagttcgggccgatgcgattcatga	Protospacer
    ********* *************

30. spacer 1.17|2833737|30|NZ_CP011270|CRISPRCasFinder,CRT,PILER-CR matches to NC_020275 (Mycobacterium intracellulare subsp. yongonense 05-1390 plasmid pMyong1, complete sequence) position: , mismatch: 8, identity: 0.733

gcacctgccggcccggtggacactgcggat	CRISPR spacer
accggcaccggccgggtggacactgcgggt	Protospacer
.*   ..****** **************.*

31. spacer 1.7|2833077|30|NZ_CP011270|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021332 (Maritalea myrionectae strain HL2708#5 plasmid pHL2708Y3, complete sequence) position: , mismatch: 9, identity: 0.7

gtcaatggtttggcagaggcggggcattgc	CRISPR spacer
gccattggtttggcagaggcgggcgcccat	Protospacer
*.** ******************   ....

32. spacer 1.10|2833275|30|NZ_CP011270|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045120 (Rubrobacter sp. SCSIO 52909 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

ggatgcggaggggggcaacatcttcgaagt	CRISPR spacer
cctcgcggaggggggcaccaccttcgagaa	Protospacer
   .************* **.******..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1429284 : 1495684

Burkholderia_phage(28.57%)

integrase,tail,transposase

attL 1429148:1429163|attR 1499822:1499837

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1429148:1429163	attL	NA	NA	NA	NA
WP_082845966.1\|1429284_1430637_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_082845967.1\|1431080_1432997_+	recombinase family protein	NA	NA	NA	NA
WP_156514311.1\|1433468_1434899_+	AAA family ATPase	U5XGM6	Phormidium_phage	1.6e-17	25.4
WP_075092096.1\|1435421_1436213_+	hypothetical protein	NA	NA	NA	NA
WP_156514312.1\|1436193_1436964_+	hypothetical protein	NA	NA	NA	NA
WP_075092098.1\|1436947_1437544_+	DUF4339 domain-containing protein	NA	NA	NA	NA
WP_075092099.1\|1437664_1438054_-	hypothetical protein	NA	NA	NA	NA
WP_075092100.1\|1438162_1438378_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_075092101.1\|1438370_1440098_-	exodeoxyribonuclease VII large subunit	A0A2P1EJT5	Megavirus	1.1e-17	34.7
WP_082845968.1\|1440132_1443285_-	error-prone DNA polymerase	A0A0K1Y906	Streptomyces_phage	6.1e-102	27.6
WP_082845969.1\|1443292_1444858_-	DNA polymerase Y family protein	NA	NA	NA	NA
WP_075092105.1\|1445504_1446290_+	SOS response-associated peptidase	C7BGE4	Burkholderia_phage	2.5e-12	33.3
WP_075092106.1\|1446620_1447433_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_156514313.1\|1447483_1447834_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA
WP_075092108.1\|1448048_1449038_-	DUF1559 domain-containing protein	NA	NA	NA	NA
WP_082845971.1\|1449420_1450119_-	response regulator transcription factor	NA	NA	NA	NA
WP_075092109.1\|1450216_1450420_-	hypothetical protein	NA	NA	NA	NA
WP_156514950.1\|1450866_1451943_-	response regulator	W8CYF6	Bacillus_phage	2.5e-23	34.2
WP_075092111.1\|1456178_1460003_+	PAS domain-containing protein	W8CYF6	Bacillus_phage	1.8e-23	27.7
WP_075092112.1\|1461473_1462019_-	DUF1003 domain-containing protein	NA	NA	NA	NA
WP_075092113.1\|1462147_1462438_+	hypothetical protein	NA	NA	NA	NA
WP_075092114.1\|1462513_1462702_-	hypothetical protein	NA	NA	NA	NA
WP_082845972.1\|1462753_1463479_-	response regulator transcription factor	NA	NA	NA	NA
WP_082845973.1\|1463864_1464650_-	response regulator transcription factor	NA	NA	NA	NA
WP_075092117.1\|1464954_1465998_-	DUF3459 domain-containing protein	NA	NA	NA	NA
WP_075092118.1\|1466067_1466298_-	hypothetical protein	NA	NA	NA	NA
WP_075092119.1\|1466477_1467968_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_075092120.1\|1467964_1468726_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	4.3e-38	37.9
WP_156514314.1\|1469117_1469843_-	hypothetical protein	NA	NA	NA	NA
WP_075092122.1\|1469947_1474009_-	serine/threonine protein kinase	M1PWP3	Moumouvirus	6.6e-16	29.5
WP_075092123.1\|1474021_1474594_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_156514315.1\|1474969_1475983_+	hypothetical protein	NA	NA	NA	NA
WP_075092125.1\|1476293_1476851_-	hypothetical protein	NA	NA	NA	NA
WP_075092126.1\|1476906_1477386_+	hypothetical protein	NA	NA	NA	NA
WP_156514316.1\|1477382_1477592_+	hypothetical protein	NA	NA	NA	NA
WP_075092119.1\|1478039_1479530_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_075092120.1\|1479526_1480288_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	4.3e-38	37.9
WP_082846731.1\|1480481_1481159_+	hypothetical protein	NA	NA	NA	NA
WP_082845975.1\|1481563_1482463_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_075092131.1\|1482389_1482791_-	hypothetical protein	NA	NA	NA	NA
WP_075092132.1\|1482787_1483381_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_082845977.1\|1483285_1484017_+\|tail	lamin tail domain-containing protein	NA	NA	NA	NA
WP_075092134.1\|1484082_1484406_-	hypothetical protein	NA	NA	NA	NA
WP_075092135.1\|1484452_1485136_-	hypothetical protein	NA	NA	NA	NA
WP_156514317.1\|1485259_1486102_-	hypothetical protein	NA	NA	NA	NA
WP_075092137.1\|1486094_1487702_-	ATP-binding protein	NA	NA	NA	NA
WP_075092138.1\|1487714_1488137_-	hypothetical protein	NA	NA	NA	NA
WP_075092139.1\|1488126_1490052_-	DEAD/DEAH box helicase	A0A2L0WU59	Oxyplax_ochracea_nucleopolyhedrovirus	3.6e-28	24.9
WP_075092140.1\|1490186_1490462_-	hypothetical protein	NA	NA	NA	NA
WP_075096949.1\|1490615_1491875_+	DNA (cytosine-5-)-methyltransferase	E5E3X6	Burkholderia_phage	9.5e-123	56.9
WP_075092141.1\|1491867_1492359_+	DNA mismatch endonuclease Vsr	E5E3X5	Burkholderia_phage	2.1e-46	57.7
WP_082845978.1\|1492321_1493578_+	type II restriction endonuclease	E5E3X4	Burkholderia_phage	7.5e-19	35.0
WP_075092143.1\|1493715_1493937_-	hypothetical protein	NA	NA	NA	NA
WP_156514318.1\|1493933_1494131_-	hypothetical protein	NA	NA	NA	NA
WP_156514319.1\|1494136_1494574_-	hypothetical protein	A0A2I7RR53	Vibrio_phage	4.4e-11	36.3
WP_075092145.1\|1494570_1494894_-	hypothetical protein	NA	NA	NA	NA
WP_082845979.1\|1495255_1495684_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
1499822:1499837	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2271985 : 2327957

Escherichia_phage(25.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_082846057.1\|2271985_2273020_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_075092650.1\|2273267_2273966_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_082846058.1\|2274088_2274370_-	30S ribosomal protein S18	NA	NA	NA	NA
WP_075092651.1\|2274546_2276262_-\|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	A0A222YZ70	Escherichia_phage	2.1e-173	56.2
WP_075092652.1\|2276704_2277988_-	hypothetical protein	NA	NA	NA	NA
WP_156514365.1\|2278111_2279593_-	hypothetical protein	NA	NA	NA	NA
WP_082846059.1\|2279970_2281944_+	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA
WP_075092657.1\|2282315_2283227_-	hypothetical protein	NA	NA	NA	NA
WP_082846060.1\|2283867_2284821_+	hypothetical protein	NA	NA	NA	NA
WP_075092659.1\|2285069_2285753_+	zinc metallopeptidase	NA	NA	NA	NA
WP_075092660.1\|2286103_2287594_+	DUF4339 domain-containing protein	NA	NA	NA	NA
WP_075092661.1\|2287729_2288200_+	peroxiredoxin	NA	NA	NA	NA
WP_075092662.1\|2288515_2291041_-	hypothetical protein	NA	NA	NA	NA
WP_075092663.1\|2291224_2291821_+	hypothetical protein	NA	NA	NA	NA
WP_075092664.1\|2292530_2293481_+	DUF1559 domain-containing protein	NA	NA	NA	NA
WP_075092665.1\|2293595_2294042_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA
WP_156514366.1\|2294236_2295157_+	hypothetical protein	NA	NA	NA	NA
WP_075092667.1\|2295455_2297342_+	hypothetical protein	NA	NA	NA	NA
WP_156514367.1\|2297381_2299433_-	biotin/lipoyl-binding protein	NA	NA	NA	NA
WP_156514368.1\|2299571_2300444_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_075092670.1\|2300456_2302682_+	hypothetical protein	NA	NA	NA	NA
WP_082846062.1\|2302816_2304694_+	TolC family protein	NA	NA	NA	NA
WP_075097020.1\|2305454_2306117_+	hypothetical protein	M1I1N9	Paramecium_bursaria_Chlorella_virus	7.0e-08	28.1
WP_156514369.1\|2306322_2306556_-	hypothetical protein	NA	NA	NA	NA
WP_156514370.1\|2307454_2308594_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_075092672.1\|2308687_2309278_-\|transposase	IS630 family transposase	A0A1V0SCG6	Indivirus	1.4e-12	22.4
WP_075092673.1\|2309304_2309559_+	aldo/keto reductase	NA	NA	NA	NA
WP_075092674.1\|2309638_2310019_-	carboxylesterase family protein	NA	NA	NA	NA
WP_082846063.1\|2310053_2311460_+\|transposase	transposase	NA	NA	NA	NA
WP_075092676.1\|2311570_2312932_+\|transposase	transposase	NA	NA	NA	NA
WP_075092677.1\|2313245_2313887_-	Holliday junction DNA helicase RuvA	NA	NA	NA	NA
WP_075092678.1\|2314249_2315266_+	DUF1559 domain-containing protein	NA	NA	NA	NA
WP_075092679.1\|2315429_2315762_+	hypothetical protein	NA	NA	NA	NA
WP_075092680.1\|2315901_2317785_+	hypothetical protein	NA	NA	NA	NA
WP_075092681.1\|2317877_2318249_-	hypothetical protein	NA	NA	NA	NA
WP_075092682.1\|2318245_2318476_-	DUF433 domain-containing protein	NA	NA	NA	NA
WP_075092683.1\|2319073_2320075_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_082846754.1\|2320249_2321479_-	PQQ-binding-like beta-propeller repeat protein	NA	NA	NA	NA
WP_082846064.1\|2322388_2322712_+	ribosome silencing factor	NA	NA	NA	NA
WP_075092686.1\|2322794_2324822_-	hypothetical protein	NA	NA	NA	NA
WP_075092687.1\|2325387_2326206_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	8.0e-14	25.1
WP_075091179.1\|2326571_2327957_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

2697288 : 2745328

Paenibacillus_phage(50.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_082846112.1\|2697288_2699976_+\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_075092961.1\|2699977_2701573_+	GMC family oxidoreductase	NA	NA	NA	NA
WP_075092962.1\|2701619_2701859_-	hypothetical protein	NA	NA	NA	NA
WP_075092963.1\|2701915_2702515_+\|transposase	transposase	NA	NA	NA	NA
WP_075092964.1\|2702875_2703289_-	hypothetical protein	NA	NA	NA	NA
WP_075092965.1\|2703554_2712656_-	hypothetical protein	NA	NA	NA	NA
WP_156514252.1\|2713860_2714391_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.1e-16	38.0
WP_156514253.1\|2714134_2714707_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_082846063.1\|2714802_2716209_+\|transposase	transposase	NA	NA	NA	NA
WP_156514402.1\|2716273_2717083_+	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA
WP_075097050.1\|2717384_2718404_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_075092966.1\|2718400_2718727_+	hypothetical protein	NA	NA	NA	NA
WP_075092967.1\|2718881_2720273_+	Si-specific NAD(P)(+) transhydrogenase	NA	NA	NA	NA
WP_082846114.1\|2720311_2721271_-	response regulator transcription factor	NA	NA	NA	NA
WP_075092969.1\|2721671_2722721_-	Ldh family oxidoreductase	NA	NA	NA	NA
WP_075092970.1\|2722856_2723330_-	PilZ domain-containing protein	NA	NA	NA	NA
WP_075092971.1\|2723859_2725527_+	type II/IV secretion system protein	NA	NA	NA	NA
WP_082846115.1\|2725640_2726411_+	phosphatidylglycerophosphatase A	NA	NA	NA	NA
WP_075092973.1\|2726459_2727479_-	sugar isomerase	NA	NA	NA	NA
WP_082846766.1\|2727905_2729945_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	E5ESM9	Bathycoccus_sp._RCC1105_virus	1.2e-106	36.8
WP_075092975.1\|2729945_2730824_-	hypothetical protein	NA	NA	NA	NA
WP_075092976.1\|2730943_2732551_-	hypothetical protein	NA	NA	NA	NA
WP_075092977.1\|2732547_2735130_-	hypothetical protein	NA	NA	NA	NA
WP_075092978.1\|2735126_2738963_-	PQQ-binding-like beta-propeller repeat protein	NA	NA	NA	NA
WP_075092979.1\|2739038_2739737_-	biopolymer transporter ExbD	NA	NA	NA	NA
WP_075092980.1\|2739882_2740353_-	biopolymer transporter ExbD	NA	NA	NA	NA
WP_075092981.1\|2740349_2740991_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_075092982.1\|2741076_2741979_-	hypothetical protein	NA	NA	NA	NA
WP_075092983.1\|2742310_2743528_+	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA
WP_082846116.1\|2743921_2745328_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_4

5426396 : 5485364

uncultured_Caudovirales_phage(12.5%)

head,integrase,tRNA,terminase,portal,capsid,tail,protease

attL 5416079:5416098|attR 5481752:5481771

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5416079:5416098	attL	NA	NA	NA	NA
WP_075094732.1\|5426396_5427254_+\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_156514654.1\|5427640_5430778_-	c-type cytochrome	NA	NA	NA	NA
WP_075094734.1\|5431015_5431564_-	inorganic pyrophosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	3.8e-28	44.3
WP_082846389.1\|5431895_5432921_-	RNA methyltransferase	NA	NA	NA	NA
WP_075094735.1\|5433357_5435295_-	WD40 repeat domain-containing protein	NA	NA	NA	NA
WP_075094736.1\|5435291_5435795_-	cupin domain-containing protein	NA	NA	NA	NA
WP_075094737.1\|5436283_5437549_-	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA
WP_075094738.1\|5437633_5437831_-	carbon storage regulator CsrA	NA	NA	NA	NA
WP_075094739.1\|5438232_5439066_+	hypothetical protein	NA	NA	NA	NA
WP_082846390.1\|5439847_5442274_+	hypothetical protein	NA	NA	NA	NA
WP_075094741.1\|5442435_5443461_+	DUF1559 domain-containing protein	NA	NA	NA	NA
WP_075094742.1\|5443747_5444167_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA
WP_156514655.1\|5444284_5446135_+	hypothetical protein	NA	NA	NA	NA
WP_075094745.1\|5447603_5448944_-	DUF1552 domain-containing protein	NA	NA	NA	NA
WP_075094746.1\|5449045_5451661_-	DUF1592 domain-containing protein	NA	NA	NA	NA
WP_075094747.1\|5452190_5453099_+	hypothetical protein	NA	NA	NA	NA
WP_075094748.1\|5453239_5454016_+	hypothetical protein	NA	NA	NA	NA
WP_075094749.1\|5454616_5454910_-	hypothetical protein	NA	NA	NA	NA
WP_075094750.1\|5455018_5455588_-	hypothetical protein	NA	NA	NA	NA
WP_156514656.1\|5455832_5456921_+	galactose oxidase	NA	NA	NA	NA
WP_075094752.1\|5457449_5458712_+	MFS transporter	NA	NA	NA	NA
WP_075094753.1\|5459177_5459429_+	hypothetical protein	NA	NA	NA	NA
WP_075094754.1\|5459685_5461191_+	hypothetical protein	NA	NA	NA	NA
WP_156514657.1\|5461328_5461619_+	hypothetical protein	NA	NA	NA	NA
WP_082846392.1\|5461812_5462979_-\|integrase	site-specific integrase	A0A0K2CZ62	Paenibacillus_phage	2.2e-25	27.3
WP_075094756.1\|5462941_5463169_-	hypothetical protein	NA	NA	NA	NA
WP_075094757.1\|5463608_5464004_+	hypothetical protein	NA	NA	NA	NA
WP_075094758.1\|5464154_5464448_+	hypothetical protein	NA	NA	NA	NA
WP_075094759.1\|5465060_5465486_-	hypothetical protein	NA	NA	NA	NA
WP_075094760.1\|5465482_5466439_-	hypothetical protein	NA	NA	NA	NA
WP_075094761.1\|5466442_5467228_-	hypothetical protein	M9MUU1	Rhodococcus_phage	4.2e-20	31.4
WP_075094762.1\|5467237_5467597_-	hypothetical protein	A0A1V0DY68	Dinoroseobacter_phage	4.2e-07	47.5
WP_075094763.1\|5467593_5467986_-	hypothetical protein	NA	NA	NA	NA
WP_082846393.1\|5467982_5469737_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_075094765.1\|5469721_5471803_-	hypothetical protein	NA	NA	NA	NA
WP_075094766.1\|5471799_5472888_-	hypothetical protein	NA	NA	NA	NA
WP_156514658.1\|5472887_5474639_-	hypothetical protein	NA	NA	NA	NA
WP_075094768.1\|5474871_5475189_-	hypothetical protein	NA	NA	NA	NA
WP_075094769.1\|5475260_5475656_-	hypothetical protein	NA	NA	NA	NA
WP_075094770.1\|5475698_5476109_-	hypothetical protein	NA	NA	NA	NA
WP_075094771.1\|5476139_5476691_-	hypothetical protein	NA	NA	NA	NA
WP_075094772.1\|5476690_5477152_-	hypothetical protein	NA	NA	NA	NA
WP_082846394.1\|5477148_5477484_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_075094774.1\|5477480_5478071_-	hypothetical protein	NA	NA	NA	NA
WP_075094775.1\|5478115_5478727_-	hypothetical protein	NA	NA	NA	NA
WP_075094776.1\|5478802_5479261_-	hypothetical protein	NA	NA	NA	NA
WP_075094777.1\|5479342_5479558_-	hypothetical protein	NA	NA	NA	NA
WP_075094778.1\|5479627_5480995_-\|capsid	phage major capsid protein	A0A0F7L2V9	uncultured_marine_virus	9.8e-49	38.7
WP_082846395.1\|5481196_5481862_-\|protease	Clp protease ClpP	A0A142K8P6	Gordonia_phage	1.4e-32	40.2
5481752:5481771	attR	NA	NA	NA	NA
WP_082846396.1\|5481858_5483649_-\|portal	phage portal protein	A0A0A7RUE7	Clostridium_phage	9.9e-41	26.7
WP_082846397.1\|5483519_5485364_-\|terminase	terminase large subunit	C7BGG7	Burkholderia_phage	5.7e-60	31.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011270

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection