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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP012975 Staphylococcus aureus strain ST20130943 plasmid pST20130943, complete sequence 0 crisprs csa3 0 0 0 0
NZ_CP012974 Staphylococcus aureus strain ST20130943 chromosome, complete genome 9 crisprs cas3,DEDDh,DinG,csa3,RT,WYL 4 5 8 0

Results visualization

1. NZ_CP012974
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012974_1 138418-138502 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012974_2 627719-627811 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012974_3 831807-831891 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012974_4 1100545-1100626 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012974_5 1607595-1607676 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012974_6 1693679-1693764 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012974_7 2136993-2137082 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012974_8 2149323-2149408 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012974_9 2713453-2713589 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP012974_1 1.1|138444|33|NZ_CP012974|CRISPRCasFinder 138444-138476 33 NZ_CP012974.1 1026232-1026264 0 1.0
NZ_CP012974_1 1.1|138444|33|NZ_CP012974|CRISPRCasFinder 138444-138476 33 NZ_CP012974.1 1304328-1304360 0 1.0
NZ_CP012974_1 1.1|138444|33|NZ_CP012974|CRISPRCasFinder 138444-138476 33 NZ_CP012974.1 831502-831534 1 0.97
NZ_CP012974_3 3.1|831836|27|NZ_CP012974|CRISPRCasFinder 831836-831862 27 NZ_CP012974.1 796648-796674 1 0.963
NZ_CP012974_3 3.1|831836|27|NZ_CP012974|CRISPRCasFinder 831836-831862 27 NZ_CP012974.1 880632-880658 1 0.963
NZ_CP012974_3 3.1|831836|27|NZ_CP012974|CRISPRCasFinder 831836-831862 27 NZ_CP012974.1 1100611-1100637 1 0.963
NZ_CP012974_3 3.1|831836|27|NZ_CP012974|CRISPRCasFinder 831836-831862 27 NZ_CP012974.1 1607739-1607765 1 0.963
NZ_CP012974_3 3.1|831836|27|NZ_CP012974|CRISPRCasFinder 831836-831862 27 NZ_CP012974.1 2259766-2259792 1 0.963
NZ_CP012974_9 9.1|2713478|31|NZ_CP012974|CRISPRCasFinder 2713478-2713508 31 NZ_CP012974.1 796685-796715 1 0.968
NZ_CP012974_9 9.1|2713478|31|NZ_CP012974|CRISPRCasFinder 2713478-2713508 31 NZ_CP012974.1 1100626-1100656 1 0.968
NZ_CP012974_9 9.2|2713534|31|NZ_CP012974|CRISPRCasFinder 2713534-2713564 31 NZ_CP012974.1 113325-113355 1 0.968
NZ_CP012974_9 9.2|2713534|31|NZ_CP012974|CRISPRCasFinder 2713534-2713564 31 NZ_CP012974.1 1026220-1026250 1 0.968
NZ_CP012974_9 9.2|2713534|31|NZ_CP012974|CRISPRCasFinder 2713534-2713564 31 NZ_CP012974.1 1304342-1304372 1 0.968
NZ_CP012974_9 9.2|2713534|31|NZ_CP012974|CRISPRCasFinder 2713534-2713564 31 NZ_CP012974.1 2294122-2294152 1 0.968
NZ_CP012974_9 9.2|2713534|31|NZ_CP012974|CRISPRCasFinder 2713534-2713564 31 NZ_CP012974.1 2449034-2449064 1 0.968
NZ_CP012974_1 1.1|138444|33|NZ_CP012974|CRISPRCasFinder 138444-138476 33 NZ_CP012974.1 999803-999835 2 0.939
NZ_CP012974_3 3.1|831836|27|NZ_CP012974|CRISPRCasFinder 831836-831862 27 NZ_CP012974.1 880576-880602 2 0.926
NZ_CP012974_3 3.1|831836|27|NZ_CP012974|CRISPRCasFinder 831836-831862 27 NZ_CP012974.1 2259822-2259848 2 0.926
NZ_CP012974_9 9.1|2713478|31|NZ_CP012974|CRISPRCasFinder 2713478-2713508 31 NZ_CP012974.1 796629-796659 2 0.935
NZ_CP012974_9 9.1|2713478|31|NZ_CP012974|CRISPRCasFinder 2713478-2713508 31 NZ_CP012974.1 831873-831903 2 0.935
NZ_CP012974_9 9.1|2713478|31|NZ_CP012974|CRISPRCasFinder 2713478-2713508 31 NZ_CP012974.1 880591-880621 2 0.935
NZ_CP012974_9 9.1|2713478|31|NZ_CP012974|CRISPRCasFinder 2713478-2713508 31 NZ_CP012974.1 1184333-1184363 2 0.935
NZ_CP012974_9 9.1|2713478|31|NZ_CP012974|CRISPRCasFinder 2713478-2713508 31 NZ_CP012974.1 2259692-2259722 2 0.935
NZ_CP012974_9 9.1|2713478|31|NZ_CP012974|CRISPRCasFinder 2713478-2713508 31 NZ_CP012974.1 2259747-2259777 2 0.935
NZ_CP012974_9 9.2|2713534|31|NZ_CP012974|CRISPRCasFinder 2713534-2713564 31 NZ_CP012974.1 789537-789567 2 0.935
NZ_CP012974_9 9.2|2713534|31|NZ_CP012974|CRISPRCasFinder 2713534-2713564 31 NZ_CP012974.1 831490-831520 2 0.935
NZ_CP012974_9 9.2|2713534|31|NZ_CP012974|CRISPRCasFinder 2713534-2713564 31 NZ_CP012974.1 1905093-1905123 2 0.935

1. spacer 1.1|138444|33|NZ_CP012974|CRISPRCasFinder matches to position: 1026232-1026264, mismatch: 0, identity: 1.0

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*********************************

2. spacer 1.1|138444|33|NZ_CP012974|CRISPRCasFinder matches to position: 1304328-1304360, mismatch: 0, identity: 1.0

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*********************************

3. spacer 1.1|138444|33|NZ_CP012974|CRISPRCasFinder matches to position: 831502-831534, mismatch: 1, identity: 0.97

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattctcaat	Protospacer
****************************.****

4. spacer 3.1|831836|27|NZ_CP012974|CRISPRCasFinder matches to position: 796648-796674, mismatch: 1, identity: 0.963

tccgccagcttctgtgttggggccccg	CRISPR spacer
tccgtcagcttctgtgttggggccccg	Protospacer
****.**********************

5. spacer 3.1|831836|27|NZ_CP012974|CRISPRCasFinder matches to position: 880632-880658, mismatch: 1, identity: 0.963

tccgccagcttctgtgttggggccccg	CRISPR spacer
tccgccagcctctgtgttggggccccg	Protospacer
*********.*****************

6. spacer 3.1|831836|27|NZ_CP012974|CRISPRCasFinder matches to position: 1100611-1100637, mismatch: 1, identity: 0.963

tccgccagcttctgtgttggggccccg	CRISPR spacer
tccgccagcttctatgttggggccccg	Protospacer
*************.*************

7. spacer 3.1|831836|27|NZ_CP012974|CRISPRCasFinder matches to position: 1607739-1607765, mismatch: 1, identity: 0.963

tccgccagcttctgtgttggggccccg	CRISPR spacer
tccgtcagcttctgtgttggggccccg	Protospacer
****.**********************

8. spacer 3.1|831836|27|NZ_CP012974|CRISPRCasFinder matches to position: 2259766-2259792, mismatch: 1, identity: 0.963

tccgccagcttctgtgttggggccccg	CRISPR spacer
tccgccagcctctgtgttggggccccg	Protospacer
*********.*****************

9. spacer 9.1|2713478|31|NZ_CP012974|CRISPRCasFinder matches to position: 796685-796715, mismatch: 1, identity: 0.968

cattattgtaagctgactttccaccagcttc	CRISPR spacer
cattattgtaagctgactttccgccagcttc	Protospacer
**********************.********

10. spacer 9.1|2713478|31|NZ_CP012974|CRISPRCasFinder matches to position: 1100626-1100656, mismatch: 1, identity: 0.968

cattattgtaagctgactttccaccagcttc	CRISPR spacer
cattattgtaagctgactttccgccagcttc	Protospacer
**********************.********

11. spacer 9.2|2713534|31|NZ_CP012974|CRISPRCasFinder matches to position: 113325-113355, mismatch: 1, identity: 0.968

ttgtctgtagaaatcgggaatccaatttctc	CRISPR spacer
ttgtctgtagaaattgggaatccaatttctc	Protospacer
**************.****************

12. spacer 9.2|2713534|31|NZ_CP012974|CRISPRCasFinder matches to position: 1026220-1026250, mismatch: 1, identity: 0.968

ttgtctgtagaaatcgggaatccaatttctc	CRISPR spacer
ttgtctgtagaaattgggaatccaatttctc	Protospacer
**************.****************

13. spacer 9.2|2713534|31|NZ_CP012974|CRISPRCasFinder matches to position: 1304342-1304372, mismatch: 1, identity: 0.968

ttgtctgtagaaatcgggaatccaatttctc	CRISPR spacer
ttgtctgtagaaattgggaatccaatttctc	Protospacer
**************.****************

14. spacer 9.2|2713534|31|NZ_CP012974|CRISPRCasFinder matches to position: 2294122-2294152, mismatch: 1, identity: 0.968

ttgtctgtagaaatcgggaatccaatttctc	CRISPR spacer
ttgtctgtagaaattgggaatccaatttctc	Protospacer
**************.****************

15. spacer 9.2|2713534|31|NZ_CP012974|CRISPRCasFinder matches to position: 2449034-2449064, mismatch: 1, identity: 0.968

ttgtctgtagaaatcgggaatccaatttctc	CRISPR spacer
ttgtctgtagaaattgggaatccaatttctc	Protospacer
**************.****************

16. spacer 1.1|138444|33|NZ_CP012974|CRISPRCasFinder matches to position: 999803-999835, mismatch: 2, identity: 0.939

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagaggaattggatttccaat	Protospacer
*****************.*********.*****

17. spacer 3.1|831836|27|NZ_CP012974|CRISPRCasFinder matches to position: 880576-880602, mismatch: 2, identity: 0.926

tccgccagcttctgtgttggggccccg	CRISPR spacer
tccaccagcctctgtgttggggccccg	Protospacer
***.*****.*****************

18. spacer 3.1|831836|27|NZ_CP012974|CRISPRCasFinder matches to position: 2259822-2259848, mismatch: 2, identity: 0.926

tccgccagcttctgtgttggggccccg	CRISPR spacer
tctgtcagcttctgtgttggggccccg	Protospacer
**.*.**********************

19. spacer 9.1|2713478|31|NZ_CP012974|CRISPRCasFinder matches to position: 796629-796659, mismatch: 2, identity: 0.935

cattattgtaagctgactttccaccagcttc	CRISPR spacer
cattattgtaagctgactttccgtcagcttc	Protospacer
**********************..*******

20. spacer 9.1|2713478|31|NZ_CP012974|CRISPRCasFinder matches to position: 831873-831903, mismatch: 2, identity: 0.935

cattattgtaagctgactttccaccagcttc	CRISPR spacer
cattattgtaagctgacttaccatcagcttc	Protospacer
******************* ***.*******

21. spacer 9.1|2713478|31|NZ_CP012974|CRISPRCasFinder matches to position: 880591-880621, mismatch: 2, identity: 0.935

cattattgtaagctgactttccaccagcttc	CRISPR spacer
cactattgtaagctgactttccaccagcctc	Protospacer
**.*************************.**

22. spacer 9.1|2713478|31|NZ_CP012974|CRISPRCasFinder matches to position: 1184333-1184363, mismatch: 2, identity: 0.935

cattattgtaagctgactttccaccagcttc	CRISPR spacer
cattattgtaagctgactttccgtcagcttc	Protospacer
**********************..*******

23. spacer 9.1|2713478|31|NZ_CP012974|CRISPRCasFinder matches to position: 2259692-2259722, mismatch: 2, identity: 0.935

cattattgtaagctgactttccaccagcttc	CRISPR spacer
cattattgtaagctgactttccgccagcctc	Protospacer
**********************.*****.**

24. spacer 9.1|2713478|31|NZ_CP012974|CRISPRCasFinder matches to position: 2259747-2259777, mismatch: 2, identity: 0.935

cattattgtaagctgactttccaccagcttc	CRISPR spacer
cattattgtaagctgactttccgccagcctc	Protospacer
**********************.*****.**

25. spacer 9.2|2713534|31|NZ_CP012974|CRISPRCasFinder matches to position: 789537-789567, mismatch: 2, identity: 0.935

ttgtctgtagaaatcgggaatccaatttctc	CRISPR spacer
ttgtctgtagaaattggaaatccaatttctc	Protospacer
**************.**.*************

26. spacer 9.2|2713534|31|NZ_CP012974|CRISPRCasFinder matches to position: 831490-831520, mismatch: 2, identity: 0.935

ttgtctgtagaaatcgggaatccaatttctc	CRISPR spacer
ttgtctgtagaaattgagaatccaatttctc	Protospacer
**************.*.**************

27. spacer 9.2|2713534|31|NZ_CP012974|CRISPRCasFinder matches to position: 1905093-1905123, mismatch: 2, identity: 0.935

ttgtctgtagaaatcgggaatccaatttctc	CRISPR spacer
ttgtctgttgaaattgggaatccaatttctc	Protospacer
******** *****.****************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP012974_3 3.1|831836|27|NZ_CP012974|CRISPRCasFinder 831836-831862 27 NZ_CP022605 Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence 715510-715536 5 0.815
NZ_CP012974_6 6.1|1693707|30|NZ_CP012974|CRISPRCasFinder 1693707-1693736 30 NC_012520 Rhodococcus opacus B4 plasmid pROB01, complete sequence 345478-345507 5 0.833
NZ_CP012974_3 3.1|831836|27|NZ_CP012974|CRISPRCasFinder 831836-831862 27 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333734-333760 6 0.778
NZ_CP012974_3 3.1|831836|27|NZ_CP012974|CRISPRCasFinder 831836-831862 27 NZ_CP034332 Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence 3358-3384 6 0.778
NZ_CP012974_5 5.1|1607619|34|NZ_CP012974|CRISPRCasFinder 1607619-1607652 34 LC371242 Escherichia phage EcS1 DNA, complete sequence 15447-15480 8 0.765
NZ_CP012974_8 8.1|2149349|34|NZ_CP012974|CRISPRCasFinder 2149349-2149382 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NZ_CP012974_8 8.1|2149349|34|NZ_CP012974|CRISPRCasFinder 2149349-2149382 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765
NZ_CP012974_4 4.1|1100571|30|NZ_CP012974|CRISPRCasFinder 1100571-1100600 30 KT588075 Acinetobacter phage Ab105-2phi, complete genome 13350-13379 9 0.7
NZ_CP012974_4 4.1|1100571|30|NZ_CP012974|CRISPRCasFinder 1100571-1100600 30 MT349887 Acinetobacter phage 5W, complete genome 37720-37749 9 0.7

1. spacer 3.1|831836|27|NZ_CP012974|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.815

tccgccagcttctgtgttggggccccg	CRISPR spacer
tccgccagcttctgtgtttggccctga	Protospacer
****************** ** **. .

2. spacer 6.1|1693707|30|NZ_CP012974|CRISPRCasFinder matches to NC_012520 (Rhodococcus opacus B4 plasmid pROB01, complete sequence) position: , mismatch: 5, identity: 0.833

---ggcccaacacagagaaattggatcctcaat	CRISPR spacer
cggggcc---cacggagaaattggatgctcaat	Protospacer
   ****   ***.************ ******

3. spacer 3.1|831836|27|NZ_CP012974|CRISPRCasFinder matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 6, identity: 0.778

tccgccagcttctgtgttggggccccg	CRISPR spacer
gacgccagcttctgtgttgaggcctta	Protospacer
  *****************.****...

4. spacer 3.1|831836|27|NZ_CP012974|CRISPRCasFinder matches to NZ_CP034332 (Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.778

tccgccagcttctgtgttggggccccg	CRISPR spacer
accgccagcttctgtgtctgggcctac	Protospacer
 ****************. *****.  

5. spacer 5.1|1607619|34|NZ_CP012974|CRISPRCasFinder matches to LC371242 (Escherichia phage EcS1 DNA, complete sequence) position: , mismatch: 8, identity: 0.765

tttctttacgaaattctctatgttggggccccgt	CRISPR spacer
tttctttacgaaattctttttgttgacgacgaat	Protospacer
*****************.* *****. * *  .*

6. spacer 8.1|2149349|34|NZ_CP012974|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

7. spacer 8.1|2149349|34|NZ_CP012974|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

8. spacer 4.1|1100571|30|NZ_CP012974|CRISPRCasFinder matches to KT588075 (Acinetobacter phage Ab105-2phi, complete genome) position: , mismatch: 9, identity: 0.7

tgaaattggattctcaatttctacagacaa	CRISPR spacer
tccaattggattctcaattgctaccttttc	Protospacer
*  **************** ****   .  

9. spacer 4.1|1100571|30|NZ_CP012974|CRISPRCasFinder matches to MT349887 (Acinetobacter phage 5W, complete genome) position: , mismatch: 9, identity: 0.7

tgaaattggattctcaatttctacagacaa	CRISPR spacer
tccaattggattctcaattgctaccttttc	Protospacer
*  **************** ****   .  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 721562 : 729383 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 741354 : 755641 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 926822 : 969036 38 Streptococcus_phage(40.0%) protease,bacteriocin,tRNA,transposase NA
DBSCAN-SWA_4 1001276 : 1009749 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_5 1546793 : 1555105 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_6 1622822 : 1631865 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_7 1756086 : 1828327 68 Staphylococcus_phage(96.55%) protease,tRNA,transposase NA
DBSCAN-SWA_8 1929010 : 2014304 113 Staphylococcus_phage(91.46%) head,integrase,terminase,portal,capsid,tail,protease,holin attL 1958221:1958238|attR 2002141:2002158
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage