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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP014525 Haematospirillum jordaniae strain H5569 chromosome, complete genome 0 crisprs c2c9_V-U4,DEDDh,DinG 0 0 3 2
NZ_CP014527 Haematospirillum jordaniae strain H5569 plasmid unnamed 2, complete sequence 1 crisprs c2c9_V-U4,cas2,cas1,cas9 2 6 2 0
NZ_CP014526 Haematospirillum jordaniae strain H5569 plasmid unnamed 1, complete sequence 0 crisprs NA 0 0 2 0

Results visualization

1. NZ_CP014525
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1318038 : 1432695 108 Escherichia_phage(25.0%) integrase,plate,capsid,terminase,tail,tRNA,portal attL 1327353:1327369|attR 1435023:1435039
DBSCAN-SWA_2 1815107 : 1828062 11 uncultured_Mediterranean_phage(55.56%) tRNA NA
DBSCAN-SWA_3 1880372 : 1889234 8 Acinetobacter_phage(50.0%) NA NA
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP014525.1|WP_066134897.1|1362387_1362633_+|hypothetical-protein 1362387_1362633_+ 81 aa aa NA NA NA 1318038-1432695 yes
NZ_CP014525.1|WP_066134903.1|1362856_1363384_+|hypothetical-protein 1362856_1363384_+ 175 aa aa NA NA NA 1318038-1432695 yes
2. NZ_CP014526
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 17874 30 Burkholderia_phage(30.0%) tail,plate,capsid,head,terminase,portal NA
DBSCAN-SWA_2 22508 : 32160 13 Rhizobium_phage(11.11%) tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP014527
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014527_1 151177-151605 TypeII NA
6 spacers
cas2,cas1,cas9

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP014527_1 1.6|151541|29|NZ_CP014527|PILER-CR,CRISPRCasFinder,CRT 151541-151569 29 NZ_CP014525.1 1394022-1394050 1 0.966
NZ_CP014527_1 1.4|151409|30|NZ_CP014527|PILER-CR,CRISPRCasFinder,CRT 151409-151438 30 NZ_CP014525.1 1392903-1392932 2 0.933

1. spacer 1.6|151541|29|NZ_CP014527|PILER-CR,CRISPRCasFinder,CRT matches to position: 1394022-1394050, mismatch: 1, identity: 0.966

gtattcaggaaatagccagcgttattggc	CRISPR spacer
gtattcaggaaatagccggcgttattggc	Protospacer
*****************.***********

2. spacer 1.4|151409|30|NZ_CP014527|PILER-CR,CRISPRCasFinder,CRT matches to position: 1392903-1392932, mismatch: 2, identity: 0.933

gcctgccacacataggcgatacctgcgagc	CRISPR spacer
gcctgccatacataggcgatgcctgcgagc	Protospacer
********.***********.*********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP014527_1 1.1|151213|29|NZ_CP014527|PILER-CR,CRISPRCasFinder,CRT 151213-151241 29 NZ_CP014527 Haematospirillum jordaniae strain H5569 plasmid unnamed 2, complete sequence 151213-151241 0 1.0
NZ_CP014527_1 1.2|151278|29|NZ_CP014527|PILER-CR,CRISPRCasFinder,CRT 151278-151306 29 NZ_CP014527 Haematospirillum jordaniae strain H5569 plasmid unnamed 2, complete sequence 151278-151306 0 1.0
NZ_CP014527_1 1.3|151343|30|NZ_CP014527|PILER-CR,CRISPRCasFinder,CRT 151343-151372 30 NZ_CP014527 Haematospirillum jordaniae strain H5569 plasmid unnamed 2, complete sequence 151343-151372 0 1.0
NZ_CP014527_1 1.4|151409|30|NZ_CP014527|PILER-CR,CRISPRCasFinder,CRT 151409-151438 30 NZ_CP014527 Haematospirillum jordaniae strain H5569 plasmid unnamed 2, complete sequence 151409-151438 0 1.0
NZ_CP014527_1 1.5|151475|30|NZ_CP014527|PILER-CR,CRISPRCasFinder,CRT 151475-151504 30 NZ_CP014527 Haematospirillum jordaniae strain H5569 plasmid unnamed 2, complete sequence 151475-151504 0 1.0
NZ_CP014527_1 1.6|151541|29|NZ_CP014527|PILER-CR,CRISPRCasFinder,CRT 151541-151569 29 NZ_CP014527 Haematospirillum jordaniae strain H5569 plasmid unnamed 2, complete sequence 151541-151569 0 1.0
NZ_CP014527_1 1.2|151278|29|NZ_CP014527|PILER-CR,CRISPRCasFinder,CRT 151278-151306 29 NZ_CP050082 Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence 537493-537521 5 0.828
NZ_CP014527_1 1.2|151278|29|NZ_CP014527|PILER-CR,CRISPRCasFinder,CRT 151278-151306 29 NZ_CP016611 Xylella fastidiosa strain Salento-2 plasmid pSal2, complete sequence 26631-26659 7 0.759
NZ_CP014527_1 1.2|151278|29|NZ_CP014527|PILER-CR,CRISPRCasFinder,CRT 151278-151306 29 NZ_CP016609 Xylella fastidiosa strain Salento-1 plasmid pSal1, complete sequence 26630-26658 7 0.759
NZ_CP014527_1 1.2|151278|29|NZ_CP014527|PILER-CR,CRISPRCasFinder,CRT 151278-151306 29 NZ_CP020871 Xylella fastidiosa subsp. pauca strain De Donno plasmid pXF-De_Donno, complete sequence 35014-35042 7 0.759
NZ_CP014527_1 1.1|151213|29|NZ_CP014527|PILER-CR,CRISPRCasFinder,CRT 151213-151241 29 CP054934 Nocardiopsis flavescens strain NA01583 plasmid unnamed1, complete sequence 134564-134592 8 0.724

1. spacer 1.1|151213|29|NZ_CP014527|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014527 (Haematospirillum jordaniae strain H5569 plasmid unnamed 2, complete sequence) position: , mismatch: 0, identity: 1.0

tctatgccggtgagcatgtcctggaccgt	CRISPR spacer
tctatgccggtgagcatgtcctggaccgt	Protospacer
*****************************

2. spacer 1.2|151278|29|NZ_CP014527|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014527 (Haematospirillum jordaniae strain H5569 plasmid unnamed 2, complete sequence) position: , mismatch: 0, identity: 1.0

agaacaaggttgaagccgcctaccggcgc	CRISPR spacer
agaacaaggttgaagccgcctaccggcgc	Protospacer
*****************************

3. spacer 1.3|151343|30|NZ_CP014527|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014527 (Haematospirillum jordaniae strain H5569 plasmid unnamed 2, complete sequence) position: , mismatch: 0, identity: 1.0

tcgggccacgacaggagggttgggatgatg	CRISPR spacer
tcgggccacgacaggagggttgggatgatg	Protospacer
******************************

4. spacer 1.4|151409|30|NZ_CP014527|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014527 (Haematospirillum jordaniae strain H5569 plasmid unnamed 2, complete sequence) position: , mismatch: 0, identity: 1.0

gcctgccacacataggcgatacctgcgagc	CRISPR spacer
gcctgccacacataggcgatacctgcgagc	Protospacer
******************************

5. spacer 1.5|151475|30|NZ_CP014527|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014527 (Haematospirillum jordaniae strain H5569 plasmid unnamed 2, complete sequence) position: , mismatch: 0, identity: 1.0

aacgctgaaaatagacccggctgtggttct	CRISPR spacer
aacgctgaaaatagacccggctgtggttct	Protospacer
******************************

6. spacer 1.6|151541|29|NZ_CP014527|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014527 (Haematospirillum jordaniae strain H5569 plasmid unnamed 2, complete sequence) position: , mismatch: 0, identity: 1.0

gtattcaggaaatagccagcgttattggc	CRISPR spacer
gtattcaggaaatagccagcgttattggc	Protospacer
*****************************

7. spacer 1.2|151278|29|NZ_CP014527|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050082 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence) position: , mismatch: 5, identity: 0.828

agaacaaggttgaagccgcctaccggcgc	CRISPR spacer
acaacaaggttgaagccgccgacttgagc	Protospacer
* ****************** **. * **

8. spacer 1.2|151278|29|NZ_CP014527|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016611 (Xylella fastidiosa strain Salento-2 plasmid pSal2, complete sequence) position: , mismatch: 7, identity: 0.759

agaacaaggttgaagccgcctaccggcgc	CRISPR spacer
tgaacaaggttcaagccgtctacccgaaa	Protospacer
 ********** ******.***** * . 

9. spacer 1.2|151278|29|NZ_CP014527|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016609 (Xylella fastidiosa strain Salento-1 plasmid pSal1, complete sequence) position: , mismatch: 7, identity: 0.759

agaacaaggttgaagccgcctaccggcgc	CRISPR spacer
tgaacaaggttcaagccgtctacccgaaa	Protospacer
 ********** ******.***** * . 

10. spacer 1.2|151278|29|NZ_CP014527|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020871 (Xylella fastidiosa subsp. pauca strain De Donno plasmid pXF-De_Donno, complete sequence) position: , mismatch: 7, identity: 0.759

agaacaaggttgaagccgcctaccggcgc	CRISPR spacer
tgaacaaggttcaagccgtctacccgaaa	Protospacer
 ********** ******.***** * . 

11. spacer 1.1|151213|29|NZ_CP014527|PILER-CR,CRISPRCasFinder,CRT matches to CP054934 (Nocardiopsis flavescens strain NA01583 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.724

tctatgccggtgagcatgtcctggaccgt	CRISPR spacer
agcatgccggtgaggatgtcgtggacgtg	Protospacer
  .*********** ***** *****   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 23 : 33952 37 Microcystis_virus(22.22%) transposase,holin,tail NA
DBSCAN-SWA_2 117928 : 147062 23 Escherichia_phage(36.84%) plate,tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage