CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP014807	Rummeliibacillus stabekisii strain PP9 isolate Antarctic soil plasmid pPP9, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP014806	Rummeliibacillus stabekisii strain PP9 chromosome, complete genome	3 crisprs	csa3,cas3,DinG	0	2	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014806_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014806_1

3273711-3273824

Orphan

Consensus_repeat	Method
GCAGATTATTAAGGCCACTCATGGCACAATTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014806_1

>merge|NZ_CP014806|1|3273711-3273824|CRISPRCasFinder
GCAGATTATTAAGGCCACTCATGGCACAATTGAGGTCACTCATACCATTTAGGGTCACTCAGGTGTGGATTCAGGCCGCTTAGCAGATTATTAAGGTCACTCATGGCACAATTG

>NZ_CP014806|1|1|3273711-3273824|CRISPRCasFinder
GCAGATTATTAAGGCCACTCATGGCACAATTG	AGGTCACTCATACCATTTAGGGTCACTCAGGTGTGGATTCAGGCCGCTTA
GCAGATTATTAAGGTCACTCATGGCACAATTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014806.1\|WP_066791632.1\|3271495_3271936_+\|DUF4279-domain-containing-protein	unknown	unknown	gnl\|CDD\|372913
NZ_CP014806.1\|WP_066791627.1\|3268345_3269227_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP014806.1\|WP_066791633.1\|3272302_3273502_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP014806.1\|WP_066791621.1\|3266065_3266554_-\|QueT-transporter-family-protein	unknown	unknown	gnl\|CDD\|227052
NZ_CP014806.1\|WP_066791637.1\|3274846_3275293_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014806.1\|WP_066792075.1\|3264414_3266022_+\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|341284
NZ_CP014806.1\|WP_066791623.1\|3266745_3267243_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014806.1\|WP_066791620.1\|3263910_3264234_-\|general-stress-protein	unknown	unknown	gnl\|CDD\|378584
NZ_CP014806.1\|WP_066791650.1\|3280827_3281115_+\|YwdI-family-protein	unknown	unknown	gnl\|CDD\|379956
NZ_CP014806.1\|WP_173668500.1\|3269461_3269599_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014806.1\|WP_066791652.1\|3281133_3281514_+\|DUF423-domain-containing-protein	unknown	unknown	gnl\|CDD\|225238
NZ_CP014806.1\|WP_066791644.1\|3278213_3279047_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|183512
NZ_CP014806.1\|WP_066791629.1\|3269680_3271297_+\|ABC-F-type-ribosomal-protection-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP014806.1\|WP_066791641.1\|3276142_3276496_-\|YojF-family-protein	unknown	unknown	gnl\|CDD\|378061
NZ_CP014806.1\|WP_066791648.1\|3280066_3280750_+\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|235376
NZ_CP014806.1\|WP_066791642.1\|3276684_3278130_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|213357
NZ_CP014806.1\|WP_066791625.1\|3267292_3268207_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225518
NZ_CP014806.1\|WP_066791654.1\|3281587_3281968_-\|spore-coat-protein-GerQ	unknown	unknown	gnl\|CDD\|370609
NZ_CP014806.1\|WP_084246986.1\|3279291_3280062_+\|DUF4230-domain-containing-protein	unknown	unknown	gnl\|CDD\|379417
NZ_CP014806.1\|WP_066791639.1\|3275423_3276116_-\|bacillithiol-biosynthesis-deacetylase-BshB2	unknown	unknown	gnl\|CDD\|188515

Protein	Function_ID	Function_description	E-value
NZ_CP014806.1\|WP_066791632.1\|3271495_3271936_+\|DUF4279-domain-containing-protein	gnl\|CDD\|372913	pfam14106, DUF4279, Domain of unknown function (DUF4279). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 134 and 145 amino acids in length.	1.62827e-39
NZ_CP014806.1\|WP_066791627.1\|3268345_3269227_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.19549e-11
NZ_CP014806.1\|WP_066791633.1\|3272302_3273502_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.60461e-45
NZ_CP014806.1\|WP_066791621.1\|3266065_3266554_-\|QueT-transporter-family-protein	gnl\|CDD\|227052	COG4708, COG4708, Predicted membrane protein [Function unknown].	4.44847e-35
NZ_CP014806.1\|WP_084246986.1\|3279291_3280062_+\|DUF4230-domain-containing-protein	gnl\|CDD\|379417	pfam14014, DUF4230, Protein of unknown function (DUF4230). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 203 and 228 amino acids in length.	6.78961e-32
NZ_CP014806.1\|WP_066792075.1\|3264414_3266022_+\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|341284	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles. This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family catalyzes the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins.	0
NZ_CP014806.1\|WP_066791620.1\|3263910_3264234_-\|general-stress-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	1.54214e-23
NZ_CP014806.1\|WP_066791650.1\|3280827_3281115_+\|YwdI-family-protein	gnl\|CDD\|379956	pfam17261, DUF5327, Family of unknown function (DUF5327). This bacterial family of proteins has no known function and is mostly found in Bacilli.	5.36335e-18
NZ_CP014806.1\|WP_066791652.1\|3281133_3281514_+\|DUF423-domain-containing-protein	gnl\|CDD\|225238	COG2363, COG2363, Uncharacterized small membrane protein [Function unknown].	3.29179e-31
NZ_CP014806.1\|WP_066791644.1\|3278213_3279047_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|183512	PRK12412, PRK12412, bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase.	1.74757e-108
NZ_CP014806.1\|WP_066791629.1\|3269680_3271297_+\|ABC-F-type-ribosomal-protection-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
NZ_CP014806.1\|WP_066791641.1\|3276142_3276496_-\|YojF-family-protein	gnl\|CDD\|378061	pfam08830, DUF1806, Protein of unknown function (DUF1806). This is a bacterial family of uncharacterized proteins. The structure of one of the proteins in this family has been solved and it adopts a beta barrel-like structure.	3.63443e-68
NZ_CP014806.1\|WP_066791648.1\|3280066_3280750_+\|uracil-DNA-glycosylase	gnl\|CDD\|235376	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.	1.59237e-143
NZ_CP014806.1\|WP_066791642.1\|3276684_3278130_+\|hypothetical-protein	gnl\|CDD\|213357	cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae inner mitochondrial membrane Mg2+ transporters Mfm1p and Mrs2p-like family. A eukaryotic subfamily belonging to the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This functionally diverse subfamily includes the inner mitochondrial membrane Mg2+ transporters Saccharomyces cerevisiae Mfm1p/Lpe10p, Mrs2p, and human MRS2/ MRS2L. It also includes a family of Arabidopsis thaliana proteins (AtMGTs) some of which are localized to distinct tissues, and not all of which can transport Mg2+. Structures of the intracellular domain of two EcCorA_ZntB-like family transporters: Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, as in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.	0.000146569
NZ_CP014806.1\|WP_066791625.1\|3267292_3268207_+\|hypothetical-protein	gnl\|CDD\|225518	COG2971, COG2971, Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism].	1.85905e-41
NZ_CP014806.1\|WP_066791654.1\|3281587_3281968_-\|spore-coat-protein-GerQ	gnl\|CDD\|370609	pfam09671, Spore_GerQ, Spore coat protein (Spore_GerQ). Members of this protein family are the spore coat protein GerQ of endospore-forming Firmicutes (low GC Gram-positive bacteria). This protein is cross-linked by a spore coat-associated transglutaminase.	1.80238e-37
NZ_CP014806.1\|WP_066791639.1\|3275423_3276116_-\|bacillithiol-biosynthesis-deacetylase-BshB2	gnl\|CDD\|188515	TIGR04000, thiol_BshB2, bacillithiol biosynthesis deacetylase BshB2. Members of this protein family are BshB2 (YojG), an enzyme of bacillithiol biosynthesis; either BshB1 (YpjG) or BshB2 must be present, and often both are present. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes. [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs].	5.72313e-130

>NZ_CP014806.1|WP_066791633.1|3272302_3273502_+|MFS-transporter
MFRWKYPFILLGGIGISNVGAWVYLIALNLIILNKTGSPLAIALLYILHPIATISSNAWAGSLIDRVNTRRLMMELDVFRAICIAVIPFLPSLLYVYILAFIINMGSAIFQPTSMVYMTKLIPETDRQQFNALRSFINSCGSLIGPAIAGMLFWMGTPYTAIHINAVALLFSALIIKMLPNVDSRLKETERQRITWQLIKNDFRVVFHFSRSNTYVVKIYLLFSGTTIIMTAIDSLEAAFAKGVLSITDTNYGFLLSVFGGGIIIGSIINSIYSKQLAVNLLIGIGTIFTSIGYIIFYSSSGFSSATPGVFLIGLAVTFANTGYMTFYQNHVPVGMMGRFESLFSVMEAGFIIVVTVLIGMAAELISIRPVGLIGSFAFLILGLLAWKAVTGEKRKEYF
>NZ_CP014806.1|WP_066791632.1|3271495_3271936_+|DUF4279-domain-containing-protein
MEKTKTQVRVYLSIFGDSFPLEDITEKLGIEPSNTYRKGDRIPNRSSKLLRKETSWHLDTGYQESFDVGEQLQQIIMPLQNKVSIIQEIKQTYSVECKFYIVIIMEEGDTPSLYLDTDVINFASSIGAEFDIDLYANPYEDDFCLD
>NZ_CP014806.1|WP_066791629.1|3269680_3271297_+|ABC-F-type-ribosomal-protection-protein
MQLKVENITKILGGNTIFANLSVEVNLGERVAIVGRNGCGKTTLFKVIAGIEQPDEGRIVKTKGQTIGYLHQIPMFKDITVFNVLSQTFEQLHEMKARLTELEQMMAINMSEKVLTQYGDLLEQYQLAGGYEIEAKIASISNGLKITQLLEQPFEALSGGEKTKVMLAQILLKQPNILLLDEPTNHLDLAAIEWLEDYLNYFKGTVLIVSHDRAFLNNVVNKILEIEDGEIWVSKGNYDQYVRNKEAKIAQQFAEYQEQQKKIQKIKEAIRRLRQWANEASPPNPDLYRKAKVMEKMLERMDLVKKPRVERQMNLQLKADERSGKEVFLLNHVSHGFEEDFLFMNVHLPIFYRDRLAIVGNNGTGKSTLLKILLGELIPIDGEVKQGSNLKIGYLAQQFGQFNKEERLIEAFRRDVSMTEYEARHMLAQFLFYGHDVFKKVEQLSGGEKMRLRLAQLMVQQCNVLVLDEPTNHLDIESREALEEAIEKFDGTIVAISHDRYFLQKLFTKTAWLENQQLTLHDGPFEWAKMKQKKLYNE
>NZ_CP014806.1|WP_173668500.1|3269461_3269599_+|hypothetical-protein
MEKLAMETGVKVNTAMYFASVIAFDFATNGTSVPFFRKINSVLAN
>NZ_CP014806.1|WP_066791627.1|3268345_3269227_+|GNAT-family-N-acetyltransferase
MIKIKRLVDCTIADAVTAWNDGFEGYFVDATTTPEKFLTRMVMEDLSPALSIIAFENIRPIGIVMNGVRMDHGQKVAWNGGTGVSKDYRGKGIGKLLIESTLSILQKENVSIATLEAISENTVAISIYKKKGYLVEDTVEFLNLNGKQKQNLIGEVKRKFTVERVALQQIGQLPFYKSTNPWQTRWQSAKSGEGLLVKEENGDVLGYAYYKKNYNDQGVHTGTTMYQCEAKPERVDAEEIIYQLIGCVFGDFTDNINRTVPNLPMNKSKKTYSALRKIGFETTAQQVYMVKEI
>NZ_CP014806.1|WP_066791625.1|3267292_3268207_+|hypothetical-protein
MKIIIGVDAGGTKTEAAAYDLDGNLLHTSISGFGNVLIHEERALHHIMEAVDACQSALSKTECVHLYMGIAGYESSLNQQLILQYFKNYYKTKVDIVQDSIIAHAASLKGQDGILTIAGTGSVCFGVHDGLQKMTGGFGHLLGDEGSGYWIAIQALKAMIKEEDRGVAYSSLTRTVLKELGQTSVQDMKDFVYASPKADIARLVPVIVKEAEIGGEKALQILREAGEELAELTWNAYKKLQYKEEEKVAIAIKGSILVNIPFVQEKFTEILRQRIQNVQFITEDISSTAGCYYLAKLKGETPSN
>NZ_CP014806.1|WP_066791623.1|3266745_3267243_+|hypothetical-protein
MEKYLPKNVCILFLLLGGFVTVLGVLTQISHGTQVGNWSWREIVMVVVGIVVYFTFAFTGFYFLIARIKKRGIAWTKRRVSIDFSNHELYWHEIESIVLKKYPGIGKVTTIVTKPEYRDEIQQRLEKRKSAVESFDILWIAVQKPNIMHQEMMKAFKQFENLHRV
>NZ_CP014806.1|WP_066791621.1|3266065_3266554_-|QueT-transporter-family-protein
MKTKSLAISGIIAALYVAVTLLIAPFGFTAIQFRISEMFNHLVVFNKKYMIGIVVGVIIANFFSPLGVYDLAFGVGQSVLALTITIISIRFIKGQLAKMIFNTIVFTVTMFLIAIELHLLYDLPFLYTWFTCAVGELAVMAVGIPVMMGLNKRINFNKLIED
>NZ_CP014806.1|WP_066792075.1|3264414_3266022_+|long-chain-fatty-acid--CoA-ligase
MMGTPLVLTDFVKRAERYFPEKLIISRTAENMIHRINYREFGRRTRRLAEALTKLGMKKGTKVGSFAWNHHRHLEAYFAVPCAGAVLHMINIRLSPEHIVYIINHAEDEILLVDGDLFPLIEKAIPLLTSVKHIVVMQDNHELPPTDLKNVHSYERLLEDASDTYEFPEDLDENMPAGMCYTSATTGFPKGVIYTHRSLVLHSLALGLADSLGLRENDVSMPVVPMFHVNAWGMPFAAVNFGTTQVLPGPMFTPSLLLDLIEKEKVTITAGVPTIWLGVLKELEQNKRDISSLRVIVCGGAASPKGLIQTFEEKYNVPFIVGYGMTETTPIVSLSTYTSDMQHWSKEDKLNIRATQGLTVSLLETRVVNEQGEVPWDGKTMGELTVRGPWIADEYYKDERTKEAFKDGWLYTGDIAVMTPEGYIKITDRVKDLIKSGGEWISSVDIENALMTHPQVFEAAVIAMPDEKWQERPLACVVLKEASTATKEELLSYLEGQFAKWWVPDDVVFLNEIPKTSVGKFLKAKLRDDIHELRK
>NZ_CP014806.1|WP_066791620.1|3263910_3264234_-|general-stress-protein
MVTKITVENAVQAKEEIEKLEAQGYSRDDVYVFAHYQEREDDIADALDTAEVGMKEQGFFKSMKNLVAKRGDELRTEMQAVGLSEAEADAGEKELDQGKLVLVVNKK
>NZ_CP014806.1|WP_066791637.1|3274846_3275293_-|hypothetical-protein
MKKIIMAFLLILVIAGGFYVNSLLNSKPPLPIIRAGHENVAKVRGSYCWEGLISSECVDTIPPPELIKSQNLTPVIASPSSKLKIVFKNEPKKNTISVSKWLPNNQVEDVELNKNTIVLPQEKGMYVYDVSANWEKGSASYAFAIDVR
>NZ_CP014806.1|WP_066791639.1|3275423_3276116_-|bacillithiol-biosynthesis-deacetylase-BshB2
MLQPERQILVVFPHPDDEAFGVSGTLAQYAKAGTPITYACLTLGEMGRNLGNPPFTTREELPLIRKKELQASCEAIGIKDLRMMGLRDKTVEFEDDEEMVAMMTNLIDELNPSLIITFYPNYAVHPDHEATARAVVRAVRRMPESDRPRLYGLAFANNTVAELGDPDIINDINDVREEKMNSMRAHISQTGWMLQEEEKRKEEGATAENNWFTNEHFYSYRFDEDFEDSF
>NZ_CP014806.1|WP_066791641.1|3276142_3276496_-|YojF-family-protein
METVNLQKLQDLLNSFANKDVYIHLETTNGAYASHFDEKVFNAGTFIRNVLIRYELGKVTPDVPHRVGLKLSNGGWVYAQGITHFELDDQNRLLMAGHGYDGKLAIALEISETPFAY
>NZ_CP014806.1|WP_066791642.1|3276684_3278130_+|hypothetical-protein
MHFTTPVLEEETKIKNAWMTAMLPFSFMTKKEIALSEELLSNGYSFFNLNDKKQQSEFYGDIELSSIALKQNFLSYIERRLFPKNIRDDGFQRFSKEISKTGSLQIHDRHYLFTILSIDITLCPFGIGFVSIRVKLEDVNLFSDALDFMHHFRILEPKTNNQLGMEVQYDGEPFTCIHDFIMKHLCPEIQKYTVHDDRRDGYFGSLPYFEDERMLVTNYIELDEDHLPIEQLYRASQLDGYTEESVPFISAANTEHMEEYLKTRVNTRYMPKLCDITTEHVQTTIVYRDTTEAFREKARVRFMGVHYYTILLHYFYKLTLLELSFRYCELAWKKDEIYVEKLMQLITMFSSKYYFQEVSSRSSSREMSKRLREIFKIDELFSEVSKTLDALYVNQQKAADKRQNYLLFVLTMFTVVSGIYGMNLIIEEWDGNYKWSEIFHYNIYEWICLITAVGGILMTFFLLVSTFYNYIRKRLQFWLKY
>NZ_CP014806.1|WP_066791644.1|3278213_3279047_-|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MSLKKTLTIAGSDASGGAGLEADLKTFQEYGTYGMAAVTVIATMDPDENWSHGVYTLPIDVLKAQLKTAFSTGIDAVKTGMLSTEEVILTAGDAIKEAHLKNVVIDPVMVCKGEDEVLNPGNVDAMISHLLPIALVTTPNLFEAGQLAGMKTPKNIDEMKSAAEKIHAIGAKHVVIKGGRSIDPNKAFDLYYDGEKHFLLETPKIETTYNHGAGCTFAAAITANLANGLDVKEAVIKSKEFVAAAITHGWKLNQYVGPVMHGAKNVYGAPEITVTEL
>NZ_CP014806.1|WP_084246986.1|3279291_3280062_+|DUF4230-domain-containing-protein
MVEKEYKRRKFMPRNNKKLTQLFNKYYRDNEQAATVVEGTSMRRRSFRNIVVLALLKNKYMWASLLILLVILLVPFAAWKMIQGSTYQEQKGSLVERIQNLNELTTAEAFTKVIIEKENNELFGKEIGIDLPGTKRELLVVVPGGVKAGVDFEDVSEKNVKLDQKNKEATITLPAPKILGEPEVDFDNVQVFSSEGLFRNKPDMKEAFGLTAEAKREMIKEAKTQGLLSRAKNNAKNSVADMFALVGYDVTVKFKE
>NZ_CP014806.1|WP_066791648.1|3280066_3280750_+|uracil-DNA-glycosylase
MPKRIFDNDWQEIVGAEFDKPYYQKLRDFLKEEYATHTVYPPMEDIWNAFRYTPYHKVKVVMLGQDPYHGPNQAQGLSFSVKDGVRKPPSLQNMLKELHEDLGFGIPKDGSLIKWAKQGVLLLNTVLTVRAHEAHSHKNQGWEQFTDTVIEKLSERQEPIVFVLWGKPAQQKERLIDTSRHAIIKSPHPSPLSAHRGFFGSRPYSKINNQLLSWGEEPIDFNLTDSE
>NZ_CP014806.1|WP_066791650.1|3280827_3281115_+|YwdI-family-protein
MISYDAVIRELEKHIHQAGQRSSEAMMREELSAIRALCDLALQSDKSPTPHTVMPKMIGETVQDLSHSSVSSMPKSLTANKLEEEDANGDSLFDF
>NZ_CP014806.1|WP_066791652.1|3281133_3281514_+|DUF423-domain-containing-protein
MSFYILIGAILAFLAVAFGAFGAHALKDVLTDHYATVYETAVQYQMFHAVGLILIGILMSKSLFGPIPLLSRAGMIMLIGTIVFSGSLYVLAVTQIKVLGAITPIGGVLFLIAWVLVMIAAVKFGK
>NZ_CP014806.1|WP_066791654.1|3281587_3281968_-|spore-coat-protein-GerQ
MVQYYWTPNYQQQTYPAGGVTIPTGTVQTTPSQGPATGGLHLGREQSYIENIMRLNRSKPGTFHFSFEHATAQGQNVVIIRGVIEAAGRDHVILRDIKTNHRFLMPMIYFDYAEFDEPLQYFDQTP

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Crispr_ID: NZ_CP014806_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014806_2

3410358-3410503

Orphan

Consensus_repeat	Method
TAAAATCAGGCTACAAAACAGCTAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP014806_2

>merge|NZ_CP014806|2|3410358-3410503|CRISPRCasFinder
TGAAAAAAGGTTACAAAACTGTTGGTTCAGGTAAAACAATCAAACTTTACTACAACGGTAAATTAAAAGAAGGTTACAAAACTGCAAGAAACAATAAATTGTTGTTCTTTAACGGTTCACTTAAAAAAGGCTACAAAACAGCTGGT

>NZ_CP014806|2|2|3410358-3410503|CRISPRCasFinder
TGAAAAAAGGTTACAAAACTGTTGG	TTCAGGTAAAACAATCAAACTTTACTACAACGGTAAAT
TAAAAGAAGGTTACAAAACTGCAAG	AAACAATAAATTGTTGTTCTTTAACGGTTCAC
TTAAAAAAGGCTACAAAACAGCTGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014806.1\|WP_066791804.1\|3405152_3405773_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380314
NZ_CP014806.1\|WP_066791803.1\|3404421_3405015_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223508
NZ_CP014806.1\|WP_066791806.1\|3406756_3407365_+\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|224766
NZ_CP014806.1\|WP_066791800.1\|3402037_3402421_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014806.1\|WP_066791808.1\|3408642_3409128_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP014806.1\|WP_066791805.1\|3405794_3406733_+\|ring-cleaving-dioxygenase	unknown	unknown	gnl\|CDD\|319934
NZ_CP014806.1\|WP_066791801.1\|3402771_3403299_+\|YceI-family-protein	unknown	unknown	gnl\|CDD\|377274
NZ_CP014806.1\|WP_066791802.1\|3403425_3404409_+\|ring-cleaving-dioxygenase	unknown	unknown	gnl\|CDD\|319935
NZ_CP014806.1\|WP_066791807.1\|3407403_3408009_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223477
NZ_CP014806.1\|WP_158512616.1\|3408356_3408512_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP014806.1\|WP_066791804.1\|3405152_3405773_+\|nitroreductase-family-protein	gnl\|CDD\|380314	cd02137, MhqN-like, nitroreductase family protein similar to the NAD(P)H nitroreductase MhqN. A diverse subfamily of the nitroreductase family containing uncharacterized proteins; includes nitroreductases MhqN, YodC, YdgI, DrgA. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.	6.39108e-57
NZ_CP014806.1\|WP_066791803.1\|3404421_3405015_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|223508	COG0431, COG0431, Predicted flavoprotein [General function prediction only].	3.54736e-38
NZ_CP014806.1\|WP_066791806.1\|3406756_3407365_+\|flavin-reductase-family-protein	gnl\|CDD\|224766	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only].	2.88409e-45
NZ_CP014806.1\|WP_066791808.1\|3408642_3409128_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	6.9071e-17
NZ_CP014806.1\|WP_066791805.1\|3405794_3406733_+\|ring-cleaving-dioxygenase	gnl\|CDD\|319934	cd08346, PcpA_N_like, N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.	3.69366e-65
NZ_CP014806.1\|WP_066791801.1\|3402771_3403299_+\|YceI-family-protein	gnl\|CDD\|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	5.33185e-55
NZ_CP014806.1\|WP_066791802.1\|3403425_3404409_+\|ring-cleaving-dioxygenase	gnl\|CDD\|319935	cd08347, PcpA_C_like, C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.	5.53021e-61
NZ_CP014806.1\|WP_066791807.1\|3407403_3408009_+\|alpha/beta-hydrolase	gnl\|CDD\|223477	COG0400, COG0400, Predicted esterase [General function prediction only].	2.20938e-71

>NZ_CP014806.1|WP_066791808.1|3408642_3409128_-|sigma-70-family-RNA-polymerase-sigma-factor
MYHFEEILTRFEPMISAAIRKCKIYKNHEHYRQTARIALWQAWQKYDSRQGDFTPYAYRCIHGSILDELKREIRYEAHYQPEEDSQLETYLPMELDNEIASKLEGLLNILEEQDRQFLIDYYIRGFSYEELSVKFGTSIVALKRRRGRIIKRVRENNTIKI
>NZ_CP014806.1|WP_158512616.1|3408356_3408512_+|hypothetical-protein
MSQEEMQMKFKEILLYGYQRGNEEGTLSASDLVQELADKMKDVLWVANTQG
>NZ_CP014806.1|WP_066791807.1|3407403_3408009_+|alpha/beta-hydrolase
MKHIFNKGTNPNKPTFLMLHGTGGNELDLLPLAGVIDDEANVLSVRGNVLEQGMPRFFRRLSEGVFDEEDLIFRTNELNEFLNEAAEKYEFDRDNIIAIGYSNGANIAASLLFHYQHALKGAILLHPMVPRRGITLPDLANTSVFIGAGTNDPICSPEETKELQQLLQQANANVELHWGNRGHQLTMGEVESAKEWYLKLG
>NZ_CP014806.1|WP_066791806.1|3406756_3407365_+|flavin-reductase-family-protein
MRSIDPETMAERENYKFLTGSIIPRPVAFVTTLTQDGVLNGAPFSYFNIVSSNPPMISLSIQRSKGKMKDSARNILGSNEFVVHIVDEQNVDKINITAASLPPEQSEVELANLTPVESTKIAVPGIKESKVRMECVLEQALELGGTDEPGCDLIIGKVVQFHIEEAIYEKGRIDPRGLAAISRLAGQSYAKIGEMFEIERPK
>NZ_CP014806.1|WP_066791805.1|3405794_3406733_+|ring-cleaving-dioxygenase
MSKKTMGIHHITAIVGHPQENVDFYAGVLGLRLVKKTVNFDDPATYHLYFGNDGGKPGTIITFFPWANAQQGEIGDGQVGVTAYAIPQGSLAFWKQRLAKFNVQYTIAERFGEEVLAFDDPHGLHLELVEREAGETNTWTTGEITPKFAIKGFAGATLYSTNPSETAKLVEEIMGLEVVGQEGDYIRFRSSADIGNVIDLKLTTNGRGIMGVGTVHHIAWRAADNEDQLDWQKYISQHGYGVTPVRDRNYFNAIYFREHGEILFEIATDPPGFAHDESPEAMGEKLMLPEQFEPYRAGMERRLIPIEVRELD
>NZ_CP014806.1|WP_066791804.1|3405152_3405773_+|nitroreductase-family-protein
MTEFTQLVKERRSASNFLPNYEISQEELDEIFGLVKLGPSAFNLQHTHYIVVTDPEVKEEIRKAANGQYKVHSASAVILVLGDKEAYKKAAEINEGLLMLGILNKQEYDFAVEGTVDLYETRGPSFQRDEAIRNASLSSMLFMLAAKEKGWDTCPMIGFEEDKVKEILNISDQYEVALMITLGKEKVASRQPRGYRKPVNEFVTIV
>NZ_CP014806.1|WP_066791803.1|3404421_3405015_+|NAD(P)H-dependent-oxidoreductase
MGFMSKLFGTKQEEEETMTKVNIGIILGSTREGRVSPQVGAWVKEIADKRGDANYTIIDIADYKLPLLGEAGGDASGAAAWSEAIAAQDGFVFIVQEYNHSITGSLKNALDYLREEWNNKAAGIVSYGSVGGARAAEHLRGILGELLVADVRVHPALSLFTDFENGTDFKPKAVQEESVNQMLDQVVPWSKALFTIR
>NZ_CP014806.1|WP_066791802.1|3403425_3404409_+|ring-cleaving-dioxygenase
MDALKGLHHVTAITSSAEKIYDFFTYVLGLRLVKKTVNQDDIQTYHLYFTDDVGSPGTDMTFFDFPGIPKGVHGTNEISKTSFRVPNDEALAYWVKRFDKFEVRHTGIQEQFGKKTLSFVDFDDQNYQLISDELNEGVPAGTPWQNGPVPLEYAITGLGPIFVRTSFADYFKQLLEEVFFMKEVAKEGSFKLFEMGDGGNGAQVIVEMNTVLPQARQGYGTVHHTAFRVNDRADLDAWQQRLELYKLPNSGYVERYYFGSLYTNAAPSVLFELATDGPGFMGDEPYETLGEKLSLPPFFEPKREEIEKIVRPNDTVRSTRAFEKEYL
>NZ_CP014806.1|WP_066791801.1|3402771_3403299_+|YceI-family-protein
MAKWTVDQSHSTVGFEVKHMMVSKVRGLFDSYTADVEAADLTDLTTATIAFKFDVASINTNSEDRDNHLKSADFFDAENNPTIDFASTNIVKDGDDYKVTGDLTIKGVTKPVTFDVEYGGKGTNPWGVEVYGFEAETKINREEFDLTWNAALETGGVLVGKDIKIKVELEINPAA
>NZ_CP014806.1|WP_066791800.1|3402037_3402421_-|hypothetical-protein
MKKDYDQFKKEDINKEVSAQGLPKETNSVSVNYDSPLAGYMQSARIDILGGVAKVTATNTGNNDLKVSILSYKFAMKVVKSWTVKPGATLNTGEFSITGDTYALRVGRASDSYPTTGRGTLYGITYL

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Crispr_ID: NZ_CP014806_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014806_3

3410601-3410682

Orphan

Consensus_repeat	Method
TAAAATCAGGCTACAAAACAGCTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014806_3

>merge|NZ_CP014806|3|3410601-3410682|CRISPRCasFinder
TAAAATCAGGCTACAAAACAGCTAACAATGCAACTCTTTTATTCTACAACGGTAAATTAAAATCAGGCTACAAAACAGCTAA

>NZ_CP014806|3|3|3410601-3410682|CRISPRCasFinder
TAAAATCAGGCTACAAAACAGCTAA	CAATGCAACTCTTTTATTCTACAACGGTAAAT
TAAAATCAGGCTACAAAACAGCTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014806.1\|WP_066791804.1\|3405152_3405773_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380314
NZ_CP014806.1\|WP_066791803.1\|3404421_3405015_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223508
NZ_CP014806.1\|WP_066791806.1\|3406756_3407365_+\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|224766
NZ_CP014806.1\|WP_066791800.1\|3402037_3402421_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014806.1\|WP_066791808.1\|3408642_3409128_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP014806.1\|WP_066791805.1\|3405794_3406733_+\|ring-cleaving-dioxygenase	unknown	unknown	gnl\|CDD\|319934
NZ_CP014806.1\|WP_066791801.1\|3402771_3403299_+\|YceI-family-protein	unknown	unknown	gnl\|CDD\|377274
NZ_CP014806.1\|WP_066791802.1\|3403425_3404409_+\|ring-cleaving-dioxygenase	unknown	unknown	gnl\|CDD\|319935
NZ_CP014806.1\|WP_066791807.1\|3407403_3408009_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223477
NZ_CP014806.1\|WP_158512616.1\|3408356_3408512_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP014806.1\|WP_066791804.1\|3405152_3405773_+\|nitroreductase-family-protein	gnl\|CDD\|380314	cd02137, MhqN-like, nitroreductase family protein similar to the NAD(P)H nitroreductase MhqN. A diverse subfamily of the nitroreductase family containing uncharacterized proteins; includes nitroreductases MhqN, YodC, YdgI, DrgA. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.	6.39108e-57
NZ_CP014806.1\|WP_066791803.1\|3404421_3405015_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|223508	COG0431, COG0431, Predicted flavoprotein [General function prediction only].	3.54736e-38
NZ_CP014806.1\|WP_066791806.1\|3406756_3407365_+\|flavin-reductase-family-protein	gnl\|CDD\|224766	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only].	2.88409e-45
NZ_CP014806.1\|WP_066791808.1\|3408642_3409128_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	6.9071e-17
NZ_CP014806.1\|WP_066791805.1\|3405794_3406733_+\|ring-cleaving-dioxygenase	gnl\|CDD\|319934	cd08346, PcpA_N_like, N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.	3.69366e-65
NZ_CP014806.1\|WP_066791801.1\|3402771_3403299_+\|YceI-family-protein	gnl\|CDD\|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	5.33185e-55
NZ_CP014806.1\|WP_066791802.1\|3403425_3404409_+\|ring-cleaving-dioxygenase	gnl\|CDD\|319935	cd08347, PcpA_C_like, C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.	5.53021e-61
NZ_CP014806.1\|WP_066791807.1\|3407403_3408009_+\|alpha/beta-hydrolase	gnl\|CDD\|223477	COG0400, COG0400, Predicted esterase [General function prediction only].	2.20938e-71

>NZ_CP014806.1|WP_066791808.1|3408642_3409128_-|sigma-70-family-RNA-polymerase-sigma-factor
MYHFEEILTRFEPMISAAIRKCKIYKNHEHYRQTARIALWQAWQKYDSRQGDFTPYAYRCIHGSILDELKREIRYEAHYQPEEDSQLETYLPMELDNEIASKLEGLLNILEEQDRQFLIDYYIRGFSYEELSVKFGTSIVALKRRRGRIIKRVRENNTIKI
>NZ_CP014806.1|WP_158512616.1|3408356_3408512_+|hypothetical-protein
MSQEEMQMKFKEILLYGYQRGNEEGTLSASDLVQELADKMKDVLWVANTQG
>NZ_CP014806.1|WP_066791807.1|3407403_3408009_+|alpha/beta-hydrolase
MKHIFNKGTNPNKPTFLMLHGTGGNELDLLPLAGVIDDEANVLSVRGNVLEQGMPRFFRRLSEGVFDEEDLIFRTNELNEFLNEAAEKYEFDRDNIIAIGYSNGANIAASLLFHYQHALKGAILLHPMVPRRGITLPDLANTSVFIGAGTNDPICSPEETKELQQLLQQANANVELHWGNRGHQLTMGEVESAKEWYLKLG
>NZ_CP014806.1|WP_066791806.1|3406756_3407365_+|flavin-reductase-family-protein
MRSIDPETMAERENYKFLTGSIIPRPVAFVTTLTQDGVLNGAPFSYFNIVSSNPPMISLSIQRSKGKMKDSARNILGSNEFVVHIVDEQNVDKINITAASLPPEQSEVELANLTPVESTKIAVPGIKESKVRMECVLEQALELGGTDEPGCDLIIGKVVQFHIEEAIYEKGRIDPRGLAAISRLAGQSYAKIGEMFEIERPK
>NZ_CP014806.1|WP_066791805.1|3405794_3406733_+|ring-cleaving-dioxygenase
MSKKTMGIHHITAIVGHPQENVDFYAGVLGLRLVKKTVNFDDPATYHLYFGNDGGKPGTIITFFPWANAQQGEIGDGQVGVTAYAIPQGSLAFWKQRLAKFNVQYTIAERFGEEVLAFDDPHGLHLELVEREAGETNTWTTGEITPKFAIKGFAGATLYSTNPSETAKLVEEIMGLEVVGQEGDYIRFRSSADIGNVIDLKLTTNGRGIMGVGTVHHIAWRAADNEDQLDWQKYISQHGYGVTPVRDRNYFNAIYFREHGEILFEIATDPPGFAHDESPEAMGEKLMLPEQFEPYRAGMERRLIPIEVRELD
>NZ_CP014806.1|WP_066791804.1|3405152_3405773_+|nitroreductase-family-protein
MTEFTQLVKERRSASNFLPNYEISQEELDEIFGLVKLGPSAFNLQHTHYIVVTDPEVKEEIRKAANGQYKVHSASAVILVLGDKEAYKKAAEINEGLLMLGILNKQEYDFAVEGTVDLYETRGPSFQRDEAIRNASLSSMLFMLAAKEKGWDTCPMIGFEEDKVKEILNISDQYEVALMITLGKEKVASRQPRGYRKPVNEFVTIV
>NZ_CP014806.1|WP_066791803.1|3404421_3405015_+|NAD(P)H-dependent-oxidoreductase
MGFMSKLFGTKQEEEETMTKVNIGIILGSTREGRVSPQVGAWVKEIADKRGDANYTIIDIADYKLPLLGEAGGDASGAAAWSEAIAAQDGFVFIVQEYNHSITGSLKNALDYLREEWNNKAAGIVSYGSVGGARAAEHLRGILGELLVADVRVHPALSLFTDFENGTDFKPKAVQEESVNQMLDQVVPWSKALFTIR
>NZ_CP014806.1|WP_066791802.1|3403425_3404409_+|ring-cleaving-dioxygenase
MDALKGLHHVTAITSSAEKIYDFFTYVLGLRLVKKTVNQDDIQTYHLYFTDDVGSPGTDMTFFDFPGIPKGVHGTNEISKTSFRVPNDEALAYWVKRFDKFEVRHTGIQEQFGKKTLSFVDFDDQNYQLISDELNEGVPAGTPWQNGPVPLEYAITGLGPIFVRTSFADYFKQLLEEVFFMKEVAKEGSFKLFEMGDGGNGAQVIVEMNTVLPQARQGYGTVHHTAFRVNDRADLDAWQQRLELYKLPNSGYVERYYFGSLYTNAAPSVLFELATDGPGFMGDEPYETLGEKLSLPPFFEPKREEIEKIVRPNDTVRSTRAFEKEYL
>NZ_CP014806.1|WP_066791801.1|3402771_3403299_+|YceI-family-protein
MAKWTVDQSHSTVGFEVKHMMVSKVRGLFDSYTADVEAADLTDLTTATIAFKFDVASINTNSEDRDNHLKSADFFDAENNPTIDFASTNIVKDGDDYKVTGDLTIKGVTKPVTFDVEYGGKGTNPWGVEVYGFEAETKINREEFDLTWNAALETGGVLVGKDIKIKVELEINPAA
>NZ_CP014806.1|WP_066791800.1|3402037_3402421_-|hypothetical-protein
MKKDYDQFKKEDINKEVSAQGLPKETNSVSVNYDSPLAGYMQSARIDILGGVAKVTATNTGNNDLKVSILSYKFAMKVVKSWTVKPGATLNTGEFSITGDTYALRVGRASDSYPTTGRGTLYGITYL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014806_2	2.2\|3410446\|32\|NZ_CP014806\|CRISPRCasFinder	3410446-3410477	32	LC494302	Escherichia phage SP27 DNA, complete genome	195187-195218	5	0.844
NZ_CP014806_2	2.2\|3410446\|32\|NZ_CP014806\|CRISPRCasFinder	3410446-3410477	32	NC_027364	Escherichia phage PBECO 4, complete genome	90065-90096	5	0.844
NZ_CP014806_2	2.2\|3410446\|32\|NZ_CP014806\|CRISPRCasFinder	3410446-3410477	32	CP040041	Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence	3438-3469	8	0.75
NZ_CP014806_2	2.2\|3410446\|32\|NZ_CP014806\|CRISPRCasFinder	3410446-3410477	32	NZ_CP034581	Lactococcus lactis subsp. lactis strain UC06 plasmid pUC06F, complete sequence	6888-6919	8	0.75
NZ_CP014806_3	3.1\|3410626\|32\|NZ_CP014806\|CRISPRCasFinder	3410626-3410657	32	NZ_CP048772	Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence	118981-119012	8	0.75
NZ_CP014806_3	3.1\|3410626\|32\|NZ_CP014806\|CRISPRCasFinder	3410626-3410657	32	NC_018878	Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence	104653-104684	8	0.75

1. spacer 2.2|3410446|32|NZ_CP014806|CRISPRCasFinder matches to LC494302 (Escherichia phage SP27 DNA, complete genome) position: , mismatch: 5, identity: 0.844

aaacaataaattgttgttcttta-acggttcac	CRISPR spacer
aatcaataaattgttgttctttagatgggtta-	Protospacer
** ******************** *.** *.*

2. spacer 2.2|3410446|32|NZ_CP014806|CRISPRCasFinder matches to NC_027364 (Escherichia phage PBECO 4, complete genome) position: , mismatch: 5, identity: 0.844

aaacaataaattgttgttcttta-acggttcac	CRISPR spacer
aatcaataaattgttgttctttagatgggtta-	Protospacer
** ******************** *.** *.*

3. spacer 2.2|3410446|32|NZ_CP014806|CRISPRCasFinder matches to CP040041 (Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

aaacaataaattgttgttctttaacggttcac	CRISPR spacer
aaacaataagttgttgttctttattaaattcc	Protospacer
*********.************* ... *. *

4. spacer 2.2|3410446|32|NZ_CP014806|CRISPRCasFinder matches to NZ_CP034581 (Lactococcus lactis subsp. lactis strain UC06 plasmid pUC06F, complete sequence) position: , mismatch: 8, identity: 0.75

aaacaataaattgttgttctttaacggttcac	CRISPR spacer
aaataatcaattgttgttctttatcattgggc	Protospacer
***.*** *************** *. *  .*

5. spacer 3.1|3410626|32|NZ_CP014806|CRISPRCasFinder matches to NZ_CP048772 (Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence) position: , mismatch: 8, identity: 0.75

caatgcaactcttttattctacaacggtaaat	CRISPR spacer
caatggaactattttattctacaatctcggat	Protospacer
***** **** *************.  ...**

6. spacer 3.1|3410626|32|NZ_CP014806|CRISPRCasFinder matches to NC_018878 (Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence) position: , mismatch: 8, identity: 0.75

caatgcaactcttttattctacaacggtaaat-----	CRISPR spacer
aaatgcaactctttttttctaaa-----aaatcttct	Protospacer
 ************** ***** *     ****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

375106 : 388230

Prochlorococcus_phage(30.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066784859.1\|375106_375652_+	phosphatidylglycerophosphatase A	G3MBC5	Bacillus_virus	2.0e-37	49.4
WP_066784861.1\|375725_376487_+	thermonuclease family protein	A0A1P8CWK6	Bacillus_phage	1.0e-42	58.9
WP_066784864.1\|376495_377074_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_066784872.1\|378049_378535_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	3.6e-22	46.5
WP_066784875.1\|378518_379667_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_149031981.1\|379763_380483_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3FUQ7	Synechococcus_phage	8.8e-49	43.9
WP_066784878.1\|380475_380730_+	phosphoribosylformylglycinamidine synthase subunit PurS	M4QPE7	Synechococcus_phage	2.1e-05	33.3
WP_066784881.1\|380726_381413_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_066784882.1\|381396_383619_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	9.4e-166	41.2
WP_066784887.1\|383603_385028_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	4.6e-49	32.8
WP_066784890.1\|385081_386098_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	4.7e-72	48.0
WP_066784892.1\|386097_386682_+	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	1.8e-23	37.6
WP_066784895.1\|386694_388230_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	2.1e-71	49.7

DBSCAN-SWA_2

565374 : 634403

Bacillus_phage(22.22%)

terminase,protease,tRNA,integrase,portal,tail,head,capsid

attL 574484:574514|attR 627791:627821

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066791835.1\|565374_566109_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_066785363.1\|566243_566588_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_066785366.1\|566734_567304_+	signal peptidase I	NA	NA	NA	NA
WP_066785368.1\|567316_568180_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_066785370.1\|568268_569042_+	ribonuclease HII	G9E3X7	Emiliania_huxleyi_virus	7.3e-25	38.5
WP_066785372.1\|569048_570974_+	hypothetical protein	NA	NA	NA	NA
WP_066785374.1\|570970_571267_+	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA
WP_066785376.1\|571432_572593_+	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA
WP_066785379.1\|572609_573512_+	succinate--CoA ligase subunit alpha	NA	NA	NA	NA
WP_066785381.1\|573580_574477_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	1.2e-26	36.0
574484:574514	attL	NA	NA	NA	NA
WP_066785385.1\|574593_575724_-\|integrase	site-specific integrase	S5MNZ2	Brevibacillus_phage	1.0e-43	30.1
WP_066785388.1\|575796_576426_-	helix-turn-helix domain-containing protein	A0A1B2APZ3	Phage_Wrath	3.4e-65	58.1
WP_066785390.1\|576579_576822_+	helix-turn-helix transcriptional regulator	A0A1B2APZ4	Phage_Wrath	9.0e-22	71.6
WP_066785395.1\|576846_577029_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_066785397.1\|577049_577748_+	ORF6C domain-containing protein	A9CR56	Staphylococcus_phage	1.8e-43	41.8
WP_066785401.1\|577768_577972_+	DUF2829 domain-containing protein	A0A2H4JF85	uncultured_Caudovirales_phage	2.0e-06	42.6
WP_066785404.1\|577995_578736_+	hypothetical protein	NA	NA	NA	NA
WP_066785407.1\|578755_579124_-	hypothetical protein	NA	NA	NA	NA
WP_066785410.1\|579185_579905_+	hypothetical protein	NA	NA	NA	NA
WP_066785413.1\|579901_580105_+	hypothetical protein	A0A2D1GQB9	Lysinibacillus_phage	1.1e-09	56.9
WP_084246858.1\|580197_580455_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A2I7SC16	Paenibacillus_phage	1.2e-13	72.0
WP_066785415.1\|580469_580892_+	replication terminator protein	A0A097BY30	Enterococcus_phage	1.5e-40	64.3
WP_066785417.1\|580891_581650_+	hypothetical protein	A0A097BY87	Enterococcus_phage	2.3e-71	54.4
WP_066785419.1\|581666_581894_+	hypothetical protein	NA	NA	NA	NA
WP_066785422.1\|581909_582182_-	hypothetical protein	A0A097BY83	Enterococcus_phage	6.8e-18	50.0
WP_066785425.1\|582236_583535_+	AAA family ATPase	Q5YA97	Bacillus_phage	1.0e-167	78.8
WP_066785428.1\|583534_584662_+	AAA family ATPase	A0A0K2CZH1	Paenibacillus_phage	5.0e-131	63.0
WP_066785431.1\|584684_585302_+	hypothetical protein	A0A2I7SC41	Paenibacillus_phage	6.2e-67	80.8
WP_066785433.1\|585315_586893_+	DEAD/DEAH box helicase	Q5YA94	Bacillus_phage	5.3e-264	85.7
WP_066785435.1\|586912_587488_+	hypothetical protein	NA	NA	NA	NA
WP_066785439.1\|587488_587713_+	hypothetical protein	NA	NA	NA	NA
WP_158512558.1\|587702_587873_+	hypothetical protein	NA	NA	NA	NA
WP_066785440.1\|587877_588069_+	hypothetical protein	NA	NA	NA	NA
WP_066785442.1\|588405_588615_+	hypothetical protein	NA	NA	NA	NA
WP_158512559.1\|588668_588836_+	hypothetical protein	NA	NA	NA	NA
WP_158512560.1\|588894_589071_+	hypothetical protein	NA	NA	NA	NA
WP_066785445.1\|589370_591602_+	AAA family ATPase	Q5YA88	Bacillus_phage	0.0e+00	72.3
WP_066785446.1\|591950_592301_+	hypothetical protein	A0A0C5AN02	Paenibacillus_phage	6.9e-31	69.0
WP_066785449.1\|592312_592726_+	RusA family crossover junction endodeoxyribonuclease	Q5YA86	Bacillus_phage	3.4e-53	72.5
WP_149032048.1\|592953_593364_+	HNH endonuclease	A0A220GJG3	Streptococcus_phage	4.9e-28	50.4
WP_066785453.1\|593353_593578_+	hypothetical protein	Q5YA85	Bacillus_phage	8.9e-16	46.6
WP_066785456.1\|593609_594134_+	hypothetical protein	S5MNT8	Brevibacillus_phage	2.9e-25	44.1
WP_066785459.1\|594529_594727_+	hypothetical protein	NA	NA	NA	NA
WP_066785462.1\|594952_595144_+	hypothetical protein	NA	NA	NA	NA
WP_066785465.1\|595237_595522_+	hypothetical protein	NA	NA	NA	NA
WP_066785468.1\|595884_596130_+	hypothetical protein	NA	NA	NA	NA
WP_066785471.1\|596147_596510_+	HNH endonuclease	A0A2H4J3B4	uncultured_Caudovirales_phage	4.2e-31	50.8
WP_066785473.1\|596617_597100_+\|terminase	phage terminase small subunit P27 family	Q2I8G1	Bacillus_phage	2.0e-41	55.3
WP_066785475.1\|597096_598782_+\|terminase	terminase large subunit	Q2LII3	Bacillus_virus	6.0e-205	64.5
WP_066785477.1\|598824_599334_+	hypothetical protein	NA	NA	NA	NA
WP_066785479.1\|599364_600585_+\|portal	phage portal protein	A0A0C5AE82	Paenibacillus_phage	3.2e-144	60.8
WP_066785482.1\|600568_601309_+\|protease	Clp protease ClpP	A0A0U3U021	Bacillus_phage	2.1e-74	58.0
WP_066785485.1\|601328_602549_+\|capsid	phage major capsid protein	A0A0K2CZ99	Paenibacillus_phage	8.0e-135	65.6
WP_066785488.1\|602599_602833_+	hypothetical protein	A0A0U4JVC3	Bacillus_phage	1.6e-07	56.0
WP_066785491.1\|602832_603147_+\|head,tail	phage gp6-like head-tail connector protein	Q8SBP7	Clostridium_phage	4.0e-06	31.2
WP_066785494.1\|603139_603472_+\|head	phage head closure protein	NA	NA	NA	NA
WP_066785497.1\|603472_603904_+	HK97 gp10 family phage protein	X2KQN7	Enterococcus_phage	4.7e-13	34.5
WP_066785499.1\|603900_604293_+	hypothetical protein	NA	NA	NA	NA
WP_066785500.1\|604293_604875_+	hypothetical protein	A0A059T7Y4	Listeria_phage	1.1e-41	43.2
WP_066785502.1\|604931_605258_+	hypothetical protein	NA	NA	NA	NA
WP_158512561.1\|605290_605440_+	hypothetical protein	NA	NA	NA	NA
WP_066785505.1\|605455_610393_+\|tail	phage tail tape measure protein	A0A059T5F4	Listeria_phage	9.3e-81	41.6
WP_066785509.1\|610389_612033_+\|tail	phage tail family protein	A0A059T682	Listeria_phage	7.8e-101	37.5
WP_066785512.1\|612045_614571_+\|tail	phage tail protein	A0A059T7Y6	Listeria_phage	1.3e-99	45.7
WP_066785515.1\|614570_616175_+	hypothetical protein	A0A1I9KK49	Lactobacillus_phage	6.0e-05	37.6
WP_066785520.1\|616167_616359_+	hypothetical protein	NA	NA	NA	NA
WP_066785524.1\|616336_617458_+	hypothetical protein	NA	NA	NA	NA
WP_066785526.1\|617545_617761_+	hypothetical protein	NA	NA	NA	NA
WP_066785529.1\|617880_618285_+	hypothetical protein	NA	NA	NA	NA
WP_066785532.1\|618297_618549_+	PTS mannose transporter subunit IID	A0A2H4JAG6	uncultured_Caudovirales_phage	3.0e-12	44.6
WP_066785541.1\|618550_619366_+	N-acetylmuramoyl-L-alanine amidase	Q5ILA1	Bacillus_phage	2.7e-25	42.4
WP_066785545.1\|619624_619804_+	hypothetical protein	NA	NA	NA	NA
WP_066785548.1\|619811_620447_+	GNAT family acetyltransferase	NA	NA	NA	NA
WP_066785550.1\|620611_620833_+	transcriptional regulator	NA	NA	NA	NA
WP_066785553.1\|620829_621213_+	hypothetical protein	NA	NA	NA	NA
WP_066785556.1\|621228_621504_+	hypothetical protein	A0A2I7SCS8	Paenibacillus_phage	2.8e-11	41.8
WP_066785558.1\|621617_622127_-	hypothetical protein	A0A2H4JA12	uncultured_Caudovirales_phage	2.5e-13	43.4
WP_066785561.1\|622142_622745_-	replication-relaxation family protein	M1HML1	Bacillus_virus	2.9e-53	51.8
WP_066785563.1\|622683_623979_-	cell division protein FtsK	A0A1S5QTS4	Bacillus_phage	4.5e-136	58.4
WP_149032049.1\|624364_624526_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_066785566.1\|624663_625458_+	hypothetical protein	NA	NA	NA	NA
WP_066785569.1\|625496_625706_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_066785572.1\|625880_626768_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_066785574.1\|626793_627549_-	hypothetical protein	NA	NA	NA	NA
WP_066785576.1\|627875_629951_+	type I DNA topoisomerase	A0A167R9A0	Powai_lake_megavirus	3.3e-104	40.3
627791:627821	attR	NA	NA	NA	NA
WP_066785577.1\|629981_631292_+\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA
WP_066785580.1\|631548_632448_+	tyrosine recombinase XerC	A0A0K2CP59	Brevibacillus_phage	7.2e-32	30.3
WP_066785582.1\|632466_633015_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_066785584.1\|633011_634403_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A173GFL6	Erwinia_phage	2.1e-38	26.5

DBSCAN-SWA_3

1407015 : 1431058

Bacillus_phage(29.41%)

terminase,protease,head,tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066787680.1\|1407015_1409541_-\|tail	phage tail protein	A0A059T7Y6	Listeria_phage	1.7e-99	46.1
WP_066787681.1\|1409553_1411203_-\|tail	phage tail family protein	A0A059T682	Listeria_phage	4.2e-102	37.7
WP_066787682.1\|1411199_1416140_-\|tail	phage tail tape measure protein	A0A059T5F4	Listeria_phage	1.6e-80	41.6
WP_158512576.1\|1416155_1416305_-	hypothetical protein	NA	NA	NA	NA
WP_066787685.1\|1416337_1416664_-	hypothetical protein	NA	NA	NA	NA
WP_066787687.1\|1416721_1417303_-	hypothetical protein	A0A059T7Y4	Listeria_phage	2.2e-42	44.2
WP_066787689.1\|1417303_1417696_-	hypothetical protein	NA	NA	NA	NA
WP_066787692.1\|1417692_1418124_-	HK97 gp10 family phage protein	X2KQN7	Enterococcus_phage	4.0e-12	33.1
WP_066787695.1\|1418124_1418457_-	hypothetical protein	NA	NA	NA	NA
WP_066787698.1\|1418449_1418764_-\|head,tail	phage gp6-like head-tail connector protein	Q8SBP7	Clostridium_phage	4.0e-06	31.2
WP_066787701.1\|1418763_1418997_-	hypothetical protein	A0A0U4JVC3	Bacillus_phage	3.9e-06	53.1
WP_066787704.1\|1419047_1420268_-\|capsid	phage major capsid protein	A0A0K2CZ99	Paenibacillus_phage	4.7e-135	65.9
WP_066787706.1\|1420287_1421061_-\|protease	Clp protease ClpP	A0A0A7RUD3	Clostridium_phage	8.6e-42	41.2
WP_066787713.1\|1422290_1423976_-\|terminase	terminase large subunit	Q2LII3	Bacillus_virus	2.7e-205	64.8
WP_066787716.1\|1423972_1424455_-\|terminase	phage terminase small subunit P27 family	Q2I8G1	Bacillus_phage	2.0e-41	55.3
WP_066785471.1\|1424562_1424925_-	HNH endonuclease	A0A2H4J3B4	uncultured_Caudovirales_phage	4.2e-31	50.8
WP_066785468.1\|1424942_1425188_-	hypothetical protein	NA	NA	NA	NA
WP_066785465.1\|1425550_1425835_-	hypothetical protein	NA	NA	NA	NA
WP_066785462.1\|1425928_1426120_-	hypothetical protein	NA	NA	NA	NA
WP_066787721.1\|1426282_1426543_-	hypothetical protein	NA	NA	NA	NA
WP_066785456.1\|1426938_1427463_-	hypothetical protein	S5MNT8	Brevibacillus_phage	2.9e-25	44.1
WP_066785453.1\|1427494_1427719_-	hypothetical protein	Q5YA85	Bacillus_phage	8.9e-16	46.6
WP_066787724.1\|1427715_1428117_-	RusA family crossover junction endodeoxyribonuclease	Q5YA86	Bacillus_phage	2.2e-57	77.9
WP_066787726.1\|1428128_1428479_-	hypothetical protein	A0A0C5AN02	Paenibacillus_phage	6.9e-31	69.0
WP_066787728.1\|1428826_1431058_-	AAA family ATPase	Q5YA88	Bacillus_phage	0.0e+00	72.7

DBSCAN-SWA_4

1434328 : 1445936

Paenibacillus_phage(41.67%)

integrase

attL 1429063:1429078|attR 1447022:1447037

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1429063:1429078	attL	NA	NA	NA	NA
WP_066787745.1\|1434328_1435906_-	DEAD/DEAH box helicase	A0A2I7SC38	Paenibacillus_phage	3.7e-265	85.9
WP_066787746.1\|1435919_1436534_-	hypothetical protein	A0A2I7SC41	Paenibacillus_phage	6.8e-66	79.1
WP_066787750.1\|1436556_1437696_-	ATP-binding protein	A0A0K2CZH1	Paenibacillus_phage	5.5e-130	61.9
WP_066787753.1\|1437695_1438997_-	AAA family ATPase	Q5YA97	Bacillus_phage	2.9e-167	78.8
WP_066787756.1\|1439018_1439777_-	hypothetical protein	A0A097BY87	Enterococcus_phage	1.0e-71	54.4
WP_066787759.1\|1439776_1440199_-	replication terminator protein	A0A097BY30	Enterococcus_phage	5.7e-40	62.9
WP_084246858.1\|1440214_1440472_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A2I7SC16	Paenibacillus_phage	1.2e-13	72.0
WP_066787762.1\|1440564_1440768_-	hypothetical protein	A0A2D1GQB9	Lysinibacillus_phage	2.7e-11	57.4
WP_066787766.1\|1440764_1441430_-	hypothetical protein	NA	NA	NA	NA
WP_158512579.1\|1441702_1441879_-	hypothetical protein	NA	NA	NA	NA
WP_066787767.1\|1441941_1442130_+	hypothetical protein	NA	NA	NA	NA
WP_158512580.1\|1442110_1442287_-	hypothetical protein	NA	NA	NA	NA
WP_066787768.1\|1442397_1442787_+	DUF2513 domain-containing protein	A0A2I7SCV0	Paenibacillus_phage	4.8e-17	40.9
WP_066787771.1\|1442783_1443032_-	hypothetical protein	NA	NA	NA	NA
WP_066787777.1\|1443141_1443450_-	DUF771 domain-containing protein	NA	NA	NA	NA
WP_066791876.1\|1443427_1443619_-	transcriptional regulator	A0A2H4JAT3	uncultured_Caudovirales_phage	9.2e-14	63.5
WP_066787780.1\|1443853_1444261_+	helix-turn-helix domain-containing protein	A0A2H4J386	uncultured_Caudovirales_phage	8.6e-17	47.7
WP_066787783.1\|1444383_1444608_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_066787786.1\|1444811_1445936_+\|integrase	site-specific integrase	Q5YAA6	Bacillus_phage	1.5e-90	50.3
1447022:1447037	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1486974 : 1539695

Bacillus_phage(22.22%)

protease,integrase,head,tail,plate

attL 1497612:1497627|attR 1542247:1542262

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066787891.1\|1486974_1488168_+\|integrase	site-specific integrase	S6C485	Thermus_phage	2.9e-44	34.3
WP_066787894.1\|1488248_1489499_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA
WP_066787897.1\|1489530_1492341_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA
WP_066787905.1\|1492572_1493991_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_066787908.1\|1493987_1494668_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.4e-34	30.9
WP_066787914.1\|1494799_1496533_-	diguanylate cyclase	NA	NA	NA	NA
WP_066787916.1\|1496556_1497528_-	diaminopimelate epimerase	NA	NA	NA	NA
1497612:1497627	attL	NA	NA	NA	NA
WP_066787918.1\|1498134_1498683_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_066787921.1\|1499942_1500890_+	MATE family efflux transporter	NA	NA	NA	NA
WP_066787923.1\|1500915_1501494_+	DUF5067 domain-containing protein	NA	NA	NA	NA
WP_158512586.1\|1501532_1501748_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_066787930.1\|1502089_1503385_+	cell division protein FtsK	A0A1S5QTS4	Bacillus_phage	7.7e-136	58.4
WP_066787932.1\|1503323_1503926_+	replication-relaxation family protein	M1HML1	Bacillus_virus	5.5e-52	51.3
WP_066787935.1\|1503941_1504481_+	hypothetical protein	A0A2H4JA12	uncultured_Caudovirales_phage	1.3e-15	49.5
WP_066787938.1\|1504685_1505480_-	N-acetylmuramoyl-L-alanine amidase	Q8W5Y8	Listeria_phage	3.9e-21	42.0
WP_066787941.1\|1505481_1505733_-	PTS mannose transporter subunit IID	A0A2H4JAG6	uncultured_Caudovirales_phage	4.2e-14	47.0
WP_066787944.1\|1505747_1506197_-	hypothetical protein	NA	NA	NA	NA
WP_149032001.1\|1506180_1506561_-	hypothetical protein	NA	NA	NA	NA
WP_149032056.1\|1506624_1507515_-\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	4.8e-20	28.5
WP_173668476.1\|1507732_1507897_+	hypothetical protein	NA	NA	NA	NA
WP_066787950.1\|1507883_1508096_+	hypothetical protein	NA	NA	NA	NA
WP_066787953.1\|1508161_1509397_-	hypothetical protein	NA	NA	NA	NA
WP_158512587.1\|1509374_1509545_-	hypothetical protein	NA	NA	NA	NA
WP_066787956.1\|1509537_1510779_-\|tail	phage tail protein	Q19UQ3	Mannheimia_phage	9.0e-25	38.8
WP_066787959.1\|1510781_1511345_-\|tail	phage tail protein	A0A2K9V471	Faecalibacterium_phage	1.3e-15	38.7
WP_066787962.1\|1511337_1512450_-\|plate	baseplate J/gp47 family protein	A0A059WFM2	Vibrio_phage	7.7e-52	36.6
WP_149032002.1\|1512436_1512757_-	hypothetical protein	NA	NA	NA	NA
WP_066787968.1\|1512770_1513493_-\|tail	phage tail protein	NA	NA	NA	NA
WP_066787971.1\|1513506_1514592_-	phage late control D family protein	A0A0C5AJ59	Bacteriophage	2.0e-36	28.1
WP_066787973.1\|1514566_1514851_-\|tail	tail protein X	NA	NA	NA	NA
WP_066787976.1\|1514862_1518120_-\|tail	phage tail tape measure protein	X2KQI5	Enterococcus_phage	2.4e-61	43.1
WP_066787979.1\|1518304_1518592_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_066787982.1\|1518663_1519182_-\|tail	phage major tail tube protein	A0A0E3Y6F4	Fusobacterium_phage	4.4e-18	32.9
WP_066787985.1\|1519199_1520654_-	hypothetical protein	A0A059WKP9	Vibrio_phage	1.1e-69	34.4
WP_066787987.1\|1520653_1520953_-	hypothetical protein	NA	NA	NA	NA
WP_066787990.1\|1520949_1521456_-	hypothetical protein	A0A2K9V310	Faecalibacterium_phage	3.6e-12	27.0
WP_066787993.1\|1521452_1522019_-\|tail	phage tail protein	A0A067ZG41	Vibrio_phage	1.5e-27	42.0
WP_066787996.1\|1522018_1522336_-	hypothetical protein	NA	NA	NA	NA
WP_066787999.1\|1522319_1522619_-	hypothetical protein	NA	NA	NA	NA
WP_066788002.1\|1522629_1522947_-	DUF2190 family protein	A0A2K9V343	Faecalibacterium_phage	3.5e-10	35.8
WP_084246910.1\|1524457_1525039_-\|head,protease	HK97 family phage prohead protease	A0A2K9V308	Faecalibacterium_phage	8.7e-47	63.2
WP_066788005.1\|1528506_1529031_-	hypothetical protein	NA	NA	NA	NA
WP_066788006.1\|1529426_1529969_-\|integrase	site-specific integrase	D2XR58	Bacillus_phage	5.6e-48	53.5
WP_066788007.1\|1529968_1530562_-	hypothetical protein	A0A1L2JY33	Aeribacillus_phage	4.6e-27	45.9
WP_066788008.1\|1530573_1530783_-	hypothetical protein	NA	NA	NA	NA
WP_066788010.1\|1530833_1531103_-	hypothetical protein	NA	NA	NA	NA
WP_066788012.1\|1531279_1531504_-	hypothetical protein	NA	NA	NA	NA
WP_149032057.1\|1531519_1531681_-	DUF3954 domain-containing protein	NA	NA	NA	NA
WP_066788018.1\|1531695_1531962_-	hypothetical protein	NA	NA	NA	NA
WP_066788021.1\|1532116_1532323_-	hypothetical protein	NA	NA	NA	NA
WP_066788024.1\|1532323_1532695_-	hypothetical protein	NA	NA	NA	NA
WP_066788030.1\|1532691_1532874_-	hypothetical protein	NA	NA	NA	NA
WP_066788032.1\|1532904_1533369_-	hypothetical protein	Q3HKY3	Bacillus_phage	3.2e-28	42.0
WP_158512588.1\|1533422_1533560_-	hypothetical protein	NA	NA	NA	NA
WP_066788034.1\|1533578_1533785_-	hypothetical protein	NA	NA	NA	NA
WP_066788036.1\|1533781_1534159_-	hypothetical protein	NA	NA	NA	NA
WP_066788043.1\|1534161_1534974_-	ATP-binding protein	Q2I8C8	Bacillus_phage	1.7e-32	33.2
WP_066788047.1\|1534918_1535716_-	conserved phage C-terminal domain-containing protein	A0A2H4J2N5	uncultured_Caudovirales_phage	2.6e-25	49.6
WP_066788050.1\|1535708_1536368_-	ORF6N domain-containing protein	A0A0K2CNP0	Brevibacillus_phage	1.9e-34	39.4
WP_066788052.1\|1536489_1536678_-	hypothetical protein	NA	NA	NA	NA
WP_066788055.1\|1536710_1536977_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_066788058.1\|1537096_1537798_+	hypothetical protein	A6M973	Geobacillus_virus	1.2e-37	41.1
WP_066788061.1\|1537889_1539695_+	recombinase family protein	A0A2P1JU08	Anoxybacillus_phage	1.1e-28	28.0
1542247:1542262	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2443810 : 2451491

Bacillus_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066790127.1\|2443810_2444635_-	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	1.3e-72	55.3
WP_066790129.1\|2444631_2446113_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	2.4e-117	48.4
WP_066790134.1\|2446214_2446715_-	methylated-DNA--[protein]-cysteine S-methyltransferase	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	1.1e-21	53.8
WP_066790136.1\|2446865_2447597_+	phosphate ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.6e-21	36.2
WP_066790138.1\|2447593_2448349_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_066790140.1\|2448760_2449735_+	proline dehydrogenase family protein	A0A2H4PQT6	Staphylococcus_phage	9.0e-89	52.6
WP_066790141.1\|2449785_2450391_-	response regulator transcription factor	NA	NA	NA	NA
WP_066791957.1\|2450495_2451491_-	fatty acid desaturase	A0A1V0SAL5	Catovirus	3.7e-29	30.7

DBSCAN-SWA_7

2656318 : 2664789

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066790508.1\|2656318_2656789_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.2e-43	63.4
WP_066790509.1\|2656804_2657995_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.9e-113	51.8
WP_066791998.1\|2658012_2658651_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.5e-39	41.0
WP_066790512.1\|2658661_2659747_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	3.5e-57	37.7
WP_149032026.1\|2660720_2660867_-	lmo0937 family membrane protein	NA	NA	NA	NA
WP_149032027.1\|2661025_2661874_-	hypothetical protein	NA	NA	NA	NA
WP_066790518.1\|2662164_2662374_-	copper chaperone CopZ	A0A218MNH0	uncultured_virus	7.5e-09	44.6
WP_066790520.1\|2662404_2664789_-	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	2.7e-126	40.1

DBSCAN-SWA_8

2750040 : 2792436

Deep-sea_thermophilic_phage(26.09%)

terminase,holin,portal,coat,integrase,transposase,head,tail,plate

attL 2744047:2744062|attR 2780177:2780192

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2744047:2744062	attL	NA	NA	NA	NA
WP_066790697.1\|2750040_2752200_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_149032028.1\|2752190_2753051_-	TnsA endonuclease N-terminal domain-containing protein	NA	NA	NA	NA
WP_066790700.1\|2755582_2756332_+	ABC transporter permease	NA	NA	NA	NA
WP_066790701.1\|2756331_2757165_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_066790706.1\|2757334_2759137_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1H1Z3	Paramecium_bursaria_Chlorella_virus	9.2e-95	37.5
WP_173668488.1\|2759620_2760139_-	type 1 glutamine amidotransferase	NA	NA	NA	NA
WP_066790710.1\|2760246_2761599_-	phosphoglucosamine mutase	NA	NA	NA	NA
WP_066790712.1\|2761675_2762995_-	hypothetical protein	NA	NA	NA	NA
WP_066790714.1\|2762994_2763837_-	TIGR00159 family protein	NA	NA	NA	NA
WP_066790719.1\|2764068_2764689_-	anti-sigma factor	NA	NA	NA	NA
WP_066790721.1\|2764702_2765266_-	RNA polymerase sigma factor SigW	NA	NA	NA	NA
WP_066790722.1\|2765622_2766525_-	arginase	A0A1V0SJM8	Klosneuvirus	3.2e-24	32.3
WP_066790724.1\|2767580_2769023_-	hypothetical protein	A0A090DBU6	Clostridium_phage	3.7e-46	28.4
WP_066790726.1\|2769028_2769565_-	ImmA/IrrE family metallo-endopeptidase	A0A090D850	Clostridium_phage	7.8e-26	37.4
WP_066790731.1\|2769577_2770087_-	hypothetical protein	NA	NA	NA	NA
WP_158512607.1\|2770372_2770516_+	hypothetical protein	NA	NA	NA	NA
WP_066790733.1\|2770752_2770938_+	hypothetical protein	NA	NA	NA	NA
WP_066790735.1\|2771003_2771792_-	N-acetylmuramoyl-L-alanine amidase	Q8W5Y8	Listeria_phage	1.8e-23	40.3
WP_066790737.1\|2771795_2772191_-\|holin	phage holin family protein	D0R0E9	Streptococcus_phage	2.3e-06	28.1
WP_066790739.1\|2772290_2772542_-	hypothetical protein	NA	NA	NA	NA
WP_066790740.1\|2772649_2773882_-	hypothetical protein	NA	NA	NA	NA
WP_158512587.1\|2773859_2774030_-	hypothetical protein	NA	NA	NA	NA
WP_066790742.1\|2774022_2774871_-\|tail	tail fiber domain-containing protein	NA	NA	NA	NA
WP_066790743.1\|2774882_2775521_-	DUF2612 domain-containing protein	E5DV65	Deep-sea_thermophilic_phage	8.9e-53	49.3
WP_066790745.1\|2775520_2776693_-\|plate	baseplate J/gp47 family protein	E5DV64	Deep-sea_thermophilic_phage	3.1e-83	42.9
WP_066790746.1\|2776676_2777033_-	hypothetical protein	NA	NA	NA	NA
WP_066790748.1\|2777029_2777410_-	hypothetical protein	NA	NA	NA	NA
WP_066790750.1\|2777418_2778225_-	hypothetical protein	A0A1L2JY62	Aeribacillus_phage	4.7e-59	43.6
WP_066790752.1\|2778217_2778547_-	hypothetical protein	E5DV60	Deep-sea_thermophilic_phage	5.0e-15	61.7
WP_066790754.1\|2778546_2779128_-	LysM peptidoglycan-binding domain-containing protein	A0A2H4JD33	uncultured_Caudovirales_phage	6.1e-24	39.6
WP_066790756.1\|2779129_2781568_-	hypothetical protein	A0A223LI73	Staphylococcus_phage	2.6e-23	29.9
2780177:2780192	attR	NA	NA	NA	NA
WP_066790758.1\|2781765_2782056_-	hypothetical protein	NA	NA	NA	NA
WP_066790760.1\|2782151_2782550_-	hypothetical protein	A0A1L2K2P1	Aeribacillus_phage	6.0e-31	53.4
WP_066790763.1\|2782604_2783615_-	DUF3383 family protein	A0A1L2JZ70	Aeribacillus_phage	3.1e-84	49.6
WP_066790765.1\|2783625_2784096_-	hypothetical protein	A0A2H4J4R9	uncultured_Caudovirales_phage	1.3e-11	31.9
WP_066790767.1\|2784088_2784430_-	hypothetical protein	NA	NA	NA	NA
WP_066790769.1\|2784426_2784954_-	hypothetical protein	A0A2H4J4S5	uncultured_Caudovirales_phage	1.4e-35	44.0
WP_066790772.1\|2784946_2785270_-\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
WP_066790773.1\|2785253_2785481_-	hypothetical protein	NA	NA	NA	NA
WP_066790774.1\|2785522_2786497_-\|coat	coat protein	A0A2P1JTX1	Anoxybacillus_phage	4.2e-110	61.8
WP_066790778.1\|2786510_2787122_-	phage scaffolding protein	I1TLE1	Bacillus_phage	1.3e-37	52.0
WP_066790780.1\|2787234_2787453_-	hypothetical protein	NA	NA	NA	NA
WP_066790782.1\|2787488_2788403_-	hypothetical protein	E5DV54	Deep-sea_thermophilic_phage	1.4e-51	39.2
WP_066790785.1\|2788403_2789810_-\|portal	phage portal protein	A0A0A8WFC0	Clostridium_phage	1.3e-101	46.5
WP_066790787.1\|2789824_2791105_-\|terminase	PBSX family phage terminase large subunit	E5DV50	Deep-sea_thermophilic_phage	4.1e-190	74.2
WP_066790789.1\|2791097_2791985_-\|terminase	terminase small subunit	E5DV49	Deep-sea_thermophilic_phage	1.2e-74	50.7
WP_066790792.1\|2791968_2792436_-	DUF1064 domain-containing protein	A0A2P1JUQ3	Bacillus_phage	4.3e-28	45.1

DBSCAN-SWA_9

2795910 : 2809657

Bacillus_phage(15.38%)

integrase

attL 2798163:2798177|attR 2815498:2815512

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149032029.1\|2795910_2796090_-	hypothetical protein	A0A1B1P7M4	Bacillus_phage	9.3e-08	51.1
WP_158512609.1\|2796255_2796408_-	hypothetical protein	NA	NA	NA	NA
WP_066790801.1\|2796644_2796875_-	DUF3850 domain-containing protein	A0A059T7N3	Listeria_phage	6.5e-22	66.2
WP_066790803.1\|2796874_2797084_-	hypothetical protein	NA	NA	NA	NA
WP_066790805.1\|2797080_2797569_-	hypothetical protein	NA	NA	NA	NA
WP_084246970.1\|2797581_2798442_-	ATP-binding protein	A0A2D1GQF9	Lysinibacillus_phage	1.4e-40	38.6
2798163:2798177	attL	NA	NA	NA	NA
WP_066790808.1\|2798389_2799337_-	DnaD domain protein	D2XR43	Bacillus_phage	1.5e-51	45.7
WP_173668489.1\|2799349_2799517_-	hypothetical protein	A0A290G4G7	Caldibacillus_phage	1.9e-07	65.2
WP_066790810.1\|2799520_2800327_-	recombination protein RecT	S6AVW6	Thermus_phage	4.3e-84	62.7
WP_066790812.1\|2800329_2801265_-	YqaJ viral recombinase family protein	A0A2H4JA52	uncultured_Caudovirales_phage	6.2e-79	48.2
WP_066790814.1\|2801340_2801532_-	hypothetical protein	NA	NA	NA	NA
WP_066790816.1\|2801818_2802085_-	hypothetical protein	NA	NA	NA	NA
WP_066790817.1\|2802081_2802612_-	hypothetical protein	NA	NA	NA	NA
WP_066790819.1\|2802672_2802945_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_066790820.1\|2802979_2803783_-	phage antirepressor KilAC domain-containing protein	A0A075KK42	Lactobacillus_phage	1.3e-77	57.4
WP_066792017.1\|2804264_2804495_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_066790822.1\|2804657_2805143_+	helix-turn-helix transcriptional regulator	A8ATJ9	Listeria_phage	7.1e-18	38.8
WP_066790823.1\|2805154_2805571_+	ImmA/IrrE family metallo-endopeptidase	A0A2P1JU12	Anoxybacillus_phage	3.3e-32	48.6
WP_066790825.1\|2805607_2806333_+	hypothetical protein	NA	NA	NA	NA
WP_066790827.1\|2806589_2807147_+	DUF4352 domain-containing protein	E5DV69	Deep-sea_thermophilic_phage	4.6e-05	37.6
WP_149032032.1\|2807154_2808150_+	virulence RhuM family protein	Q9JMN3	Wolbachia_phage	8.7e-87	51.4
WP_066790829.1\|2808427_2809657_+\|integrase	site-specific integrase	A0A0K2CZ62	Paenibacillus_phage	7.7e-53	32.6
2815498:2815512	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP014806

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection