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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP015174 Staphylococcus aureus strain RIVM6519 plasmid pRIVM6519-1, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP015173 Staphylococcus aureus strain RIVM6519 chromosome, complete genome 12 crisprs RT,WYL,cas3,DEDDh,DinG,csa3 9 1 8 3
NZ_CP015175 Staphylococcus aureus strain RIVM6519 plasmid pRIVM6519-2, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP015173
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015173_1 85081-85161 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015173_2 97402-97487 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015173_3 206922-207002 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015173_4 854266-854350 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015173_5 1091270-1091371 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015173_6 1479716-1479794 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015173_7 1485118-1485333 Unclear NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015173_8 1492428-1492507 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015173_9 1528236-1528317 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015173_10 1710823-1710915 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015173_11 1792853-1792938 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015173_12 2275305-2275389 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP015173_4 4.1|854292|33|NZ_CP015173|CRISPRCasFinder 854292-854324 33 NZ_CP015173.1 2005926-2005958 0 1.0
NZ_CP015173_7 7.2|1485217|18|NZ_CP015173|CRT 1485217-1485234 18 NZ_CP015173.1 854248-854265 0 1.0
NZ_CP015173_7 7.2|1485217|18|NZ_CP015173|CRT 1485217-1485234 18 NZ_CP015173.1 977251-977268 0 1.0
NZ_CP015173_7 7.2|1485217|18|NZ_CP015173|CRT 1485217-1485234 18 NZ_CP015173.1 1313492-1313509 0 1.0
NZ_CP015173_7 7.2|1485217|18|NZ_CP015173|CRT 1485217-1485234 18 NZ_CP015173.1 1437881-1437898 0 1.0
NZ_CP015173_7 7.2|1485217|18|NZ_CP015173|CRT 1485217-1485234 18 NZ_CP015173.1 1528318-1528335 0 1.0
NZ_CP015173_7 7.2|1485217|18|NZ_CP015173|CRT 1485217-1485234 18 NZ_CP015173.1 1579020-1579037 0 1.0
NZ_CP015173_7 7.2|1485217|18|NZ_CP015173|CRT 1485217-1485234 18 NZ_CP015173.1 1694497-1694514 0 1.0
NZ_CP015173_7 7.2|1485217|18|NZ_CP015173|CRT 1485217-1485234 18 NZ_CP015173.1 1792672-1792689 0 1.0
NZ_CP015173_7 7.2|1485217|18|NZ_CP015173|CRT 1485217-1485234 18 NZ_CP015173.1 2005824-2005841 0 1.0
NZ_CP015173_7 7.2|1485217|18|NZ_CP015173|CRT 1485217-1485234 18 NZ_CP015173.1 2275390-2275407 0 1.0
NZ_CP015173_7 7.2|1485217|18|NZ_CP015173|CRT 1485217-1485234 18 NZ_CP015173.1 2289910-2289927 0 1.0
NZ_CP015173_7 7.2|1485217|18|NZ_CP015173|CRT 1485217-1485234 18 NZ_CP015173.1 2495388-2495405 0 1.0
NZ_CP015173_7 7.2|1485217|18|NZ_CP015173|CRT 1485217-1485234 18 NZ_CP015173.1 2641632-2641649 0 1.0
NZ_CP015173_7 7.2|1485217|18|NZ_CP015173|CRT 1485217-1485234 18 NZ_CP015173.1 2742759-2742776 0 1.0
NZ_CP015173_7 7.3|1485275|19|NZ_CP015173|CRT 1485275-1485293 19 NZ_CP015173.1 1485334-1485352 0 1.0
NZ_CP015173_7 7.3|1485275|19|NZ_CP015173|CRT 1485275-1485293 19 NZ_CP015173.1 1492530-1492548 0 1.0
NZ_CP015173_8 8.1|1492452|32|NZ_CP015173|CRISPRCasFinder 1492452-1492483 32 NZ_CP015173.1 371365-371396 0 1.0
NZ_CP015173_8 8.1|1492452|32|NZ_CP015173|CRISPRCasFinder 1492452-1492483 32 NZ_CP015173.1 755965-755996 0 1.0
NZ_CP015173_8 8.1|1492452|32|NZ_CP015173|CRISPRCasFinder 1492452-1492483 32 NZ_CP015173.1 1528566-1528597 0 1.0
NZ_CP015173_8 8.1|1492452|32|NZ_CP015173|CRISPRCasFinder 1492452-1492483 32 NZ_CP015173.1 2289974-2290005 0 1.0
NZ_CP015173_8 8.1|1492452|32|NZ_CP015173|CRISPRCasFinder 1492452-1492483 32 NZ_CP015173.1 2766725-2766756 0 1.0
NZ_CP015173_3 3.1|206947|31|NZ_CP015173|CRISPRCasFinder 206947-206977 31 NZ_CP015173.1 1492402-1492432 1 0.968
NZ_CP015173_6 6.1|1479740|31|NZ_CP015173|CRISPRCasFinder 1479740-1479770 31 NZ_CP015173.1 977221-977251 1 0.968
NZ_CP015173_7 7.2|1485217|18|NZ_CP015173|CRT 1485217-1485234 18 NZ_CP015173.1 206906-206923 1 0.944
NZ_CP015173_7 7.2|1485217|18|NZ_CP015173|CRT 1485217-1485234 18 NZ_CP015173.1 977196-977213 1 0.944
NZ_CP015173_7 7.2|1485217|18|NZ_CP015173|CRT 1485217-1485234 18 NZ_CP015173.1 1598550-1598567 1 0.944
NZ_CP015173_7 7.2|1485217|18|NZ_CP015173|CRT 1485217-1485234 18 NZ_CP015173.1 1798321-1798338 1 0.944
NZ_CP015173_7 7.2|1485217|18|NZ_CP015173|CRT 1485217-1485234 18 NZ_CP015173.1 2010307-2010324 1 0.944
NZ_CP015173_7 7.2|1485217|18|NZ_CP015173|CRT 1485217-1485234 18 NZ_CP015173.1 2055798-2055815 1 0.944
NZ_CP015173_7 7.2|1485217|18|NZ_CP015173|CRT 1485217-1485234 18 NZ_CP015173.1 2352778-2352795 1 0.944
NZ_CP015173_7 7.2|1485217|18|NZ_CP015173|CRT 1485217-1485234 18 NZ_CP015173.1 2353011-2353028 1 0.944
NZ_CP015173_7 7.2|1485217|18|NZ_CP015173|CRT 1485217-1485234 18 NZ_CP015173.1 2650982-2650999 1 0.944
NZ_CP015173_7 7.3|1485275|19|NZ_CP015173|CRT 1485275-1485293 19 NZ_CP015173.1 196102-196120 1 0.947
NZ_CP015173_7 7.3|1485275|19|NZ_CP015173|CRT 1485275-1485293 19 NZ_CP015173.1 1439039-1439057 1 0.947
NZ_CP015173_7 7.3|1485275|19|NZ_CP015173|CRT 1485275-1485293 19 NZ_CP015173.1 2005940-2005958 1 0.947
NZ_CP015173_7 7.3|1485275|19|NZ_CP015173|CRT 1485275-1485293 19 NZ_CP015173.1 2641690-2641708 1 0.947
NZ_CP015173_7 7.3|1485275|19|NZ_CP015173|CRT 1485275-1485293 19 NZ_CP015173.1 2742700-2742718 1 0.947
NZ_CP015173_7 7.3|1485275|19|NZ_CP015173|CRT 1485275-1485293 19 NZ_CP015173.1 2742817-2742835 1 0.947
NZ_CP015173_8 8.1|1492452|32|NZ_CP015173|CRISPRCasFinder 1492452-1492483 32 NZ_CP015173.1 2006003-2006034 1 0.969
NZ_CP015173_9 9.1|1528260|34|NZ_CP015173|CRISPRCasFinder 1528260-1528293 34 NZ_CP015173.1 2005925-2005958 1 0.971
NZ_CP015173_12 12.1|2275331|33|NZ_CP015173|CRISPRCasFinder 2275331-2275363 33 NZ_CP015173.1 2005926-2005958 1 0.97
NZ_CP015173_3 3.1|206947|31|NZ_CP015173|CRISPRCasFinder 206947-206977 31 NZ_CP015173.1 196146-196176 2 0.935
NZ_CP015173_3 3.1|206947|31|NZ_CP015173|CRISPRCasFinder 206947-206977 31 NZ_CP015173.1 371371-371401 2 0.935
NZ_CP015173_3 3.1|206947|31|NZ_CP015173|CRISPRCasFinder 206947-206977 31 NZ_CP015173.1 755971-756001 2 0.935
NZ_CP015173_3 3.1|206947|31|NZ_CP015173|CRISPRCasFinder 206947-206977 31 NZ_CP015173.1 1052533-1052563 2 0.935
NZ_CP015173_3 3.1|206947|31|NZ_CP015173|CRISPRCasFinder 206947-206977 31 NZ_CP015173.1 1313552-1313582 2 0.935
NZ_CP015173_3 3.1|206947|31|NZ_CP015173|CRISPRCasFinder 206947-206977 31 NZ_CP015173.1 1528572-1528602 2 0.935
NZ_CP015173_3 3.1|206947|31|NZ_CP015173|CRISPRCasFinder 206947-206977 31 NZ_CP015173.1 1694540-1694570 2 0.935
NZ_CP015173_3 3.1|206947|31|NZ_CP015173|CRISPRCasFinder 206947-206977 31 NZ_CP015173.1 1798265-1798295 2 0.935
NZ_CP015173_3 3.1|206947|31|NZ_CP015173|CRISPRCasFinder 206947-206977 31 NZ_CP015173.1 2005884-2005914 2 0.935
NZ_CP015173_3 3.1|206947|31|NZ_CP015173|CRISPRCasFinder 206947-206977 31 NZ_CP015173.1 2094317-2094347 2 0.935
NZ_CP015173_3 3.1|206947|31|NZ_CP015173|CRISPRCasFinder 206947-206977 31 NZ_CP015173.1 2289969-2289999 2 0.935
NZ_CP015173_4 4.1|854292|33|NZ_CP015173|CRISPRCasFinder 854292-854324 33 NZ_CP015173.1 2094273-2094305 2 0.939
NZ_CP015173_6 6.1|1479740|31|NZ_CP015173|CRISPRCasFinder 1479740-1479770 31 NZ_CP015173.1 977166-977196 2 0.935
NZ_CP015173_6 6.1|1479740|31|NZ_CP015173|CRISPRCasFinder 1479740-1479770 31 NZ_CP015173.1 2352914-2352944 2 0.935
NZ_CP015173_7 7.1|1485158|19|NZ_CP015173|CRT 1485158-1485176 19 NZ_CP015173.1 196160-196178 2 0.895
NZ_CP015173_7 7.1|1485158|19|NZ_CP015173|CRT 1485158-1485176 19 NZ_CP015173.1 1052531-1052549 2 0.895
NZ_CP015173_7 7.1|1485158|19|NZ_CP015173|CRT 1485158-1485176 19 NZ_CP015173.1 1313550-1313568 2 0.895
NZ_CP015173_7 7.1|1485158|19|NZ_CP015173|CRT 1485158-1485176 19 NZ_CP015173.1 1694554-1694572 2 0.895
NZ_CP015173_7 7.1|1485158|19|NZ_CP015173|CRT 1485158-1485176 19 NZ_CP015173.1 1798263-1798281 2 0.895
NZ_CP015173_7 7.1|1485158|19|NZ_CP015173|CRT 1485158-1485176 19 NZ_CP015173.1 2005882-2005900 2 0.895
NZ_CP015173_7 7.1|1485158|19|NZ_CP015173|CRT 1485158-1485176 19 NZ_CP015173.1 2094331-2094349 2 0.895
NZ_CP015173_7 7.1|1485158|19|NZ_CP015173|CRT 1485158-1485176 19 NZ_CP015173.1 2640289-2640307 2 0.895
NZ_CP015173_7 7.2|1485217|18|NZ_CP015173|CRT 1485217-1485234 18 NZ_CP015173.1 1452711-1452728 2 0.889
NZ_CP015173_7 7.2|1485217|18|NZ_CP015173|CRT 1485217-1485234 18 NZ_CP015173.1 1798376-1798393 2 0.889
NZ_CP015173_7 7.2|1485217|18|NZ_CP015173|CRT 1485217-1485234 18 NZ_CP015173.1 2587704-2587721 2 0.889
NZ_CP015173_7 7.3|1485275|19|NZ_CP015173|CRT 1485275-1485293 19 NZ_CP015173.1 1452655-1452673 2 0.895
NZ_CP015173_7 7.3|1485275|19|NZ_CP015173|CRT 1485275-1485293 19 NZ_CP015173.1 1792785-1792803 2 0.895
NZ_CP015173_7 7.3|1485275|19|NZ_CP015173|CRT 1485275-1485293 19 NZ_CP015173.1 2055912-2055930 2 0.895
NZ_CP015173_7 7.3|1485275|19|NZ_CP015173|CRT 1485275-1485293 19 NZ_CP015173.1 2094273-2094291 2 0.895
NZ_CP015173_7 7.3|1485275|19|NZ_CP015173|CRT 1485275-1485293 19 NZ_CP015173.1 2640233-2640251 2 0.895

1. spacer 4.1|854292|33|NZ_CP015173|CRISPRCasFinder matches to position: 2005926-2005958, mismatch: 0, identity: 1.0

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*********************************

2. spacer 7.2|1485217|18|NZ_CP015173|CRT matches to position: 854248-854265, mismatch: 0, identity: 1.0

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaaattctc	Protospacer
******************

3. spacer 7.2|1485217|18|NZ_CP015173|CRT matches to position: 977251-977268, mismatch: 0, identity: 1.0

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaaattctc	Protospacer
******************

4. spacer 7.2|1485217|18|NZ_CP015173|CRT matches to position: 1313492-1313509, mismatch: 0, identity: 1.0

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaaattctc	Protospacer
******************

5. spacer 7.2|1485217|18|NZ_CP015173|CRT matches to position: 1437881-1437898, mismatch: 0, identity: 1.0

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaaattctc	Protospacer
******************

6. spacer 7.2|1485217|18|NZ_CP015173|CRT matches to position: 1528318-1528335, mismatch: 0, identity: 1.0

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaaattctc	Protospacer
******************

7. spacer 7.2|1485217|18|NZ_CP015173|CRT matches to position: 1579020-1579037, mismatch: 0, identity: 1.0

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaaattctc	Protospacer
******************

8. spacer 7.2|1485217|18|NZ_CP015173|CRT matches to position: 1694497-1694514, mismatch: 0, identity: 1.0

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaaattctc	Protospacer
******************

9. spacer 7.2|1485217|18|NZ_CP015173|CRT matches to position: 1792672-1792689, mismatch: 0, identity: 1.0

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaaattctc	Protospacer
******************

10. spacer 7.2|1485217|18|NZ_CP015173|CRT matches to position: 2005824-2005841, mismatch: 0, identity: 1.0

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaaattctc	Protospacer
******************

11. spacer 7.2|1485217|18|NZ_CP015173|CRT matches to position: 2275390-2275407, mismatch: 0, identity: 1.0

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaaattctc	Protospacer
******************

12. spacer 7.2|1485217|18|NZ_CP015173|CRT matches to position: 2289910-2289927, mismatch: 0, identity: 1.0

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaaattctc	Protospacer
******************

13. spacer 7.2|1485217|18|NZ_CP015173|CRT matches to position: 2495388-2495405, mismatch: 0, identity: 1.0

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaaattctc	Protospacer
******************

14. spacer 7.2|1485217|18|NZ_CP015173|CRT matches to position: 2641632-2641649, mismatch: 0, identity: 1.0

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaaattctc	Protospacer
******************

15. spacer 7.2|1485217|18|NZ_CP015173|CRT matches to position: 2742759-2742776, mismatch: 0, identity: 1.0

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaaattctc	Protospacer
******************

16. spacer 7.3|1485275|19|NZ_CP015173|CRT matches to position: 1485334-1485352, mismatch: 0, identity: 1.0

attggaaatccaatttctc	CRISPR spacer
attggaaatccaatttctc	Protospacer
*******************

17. spacer 7.3|1485275|19|NZ_CP015173|CRT matches to position: 1492530-1492548, mismatch: 0, identity: 1.0

attggaaatccaatttctc	CRISPR spacer
attggaaatccaatttctc	Protospacer
*******************

18. spacer 8.1|1492452|32|NZ_CP015173|CRISPRCasFinder matches to position: 371365-371396, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

19. spacer 8.1|1492452|32|NZ_CP015173|CRISPRCasFinder matches to position: 755965-755996, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

20. spacer 8.1|1492452|32|NZ_CP015173|CRISPRCasFinder matches to position: 1528566-1528597, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

21. spacer 8.1|1492452|32|NZ_CP015173|CRISPRCasFinder matches to position: 2289974-2290005, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

22. spacer 8.1|1492452|32|NZ_CP015173|CRISPRCasFinder matches to position: 2766725-2766756, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

23. spacer 3.1|206947|31|NZ_CP015173|CRISPRCasFinder matches to position: 1492402-1492432, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

24. spacer 6.1|1479740|31|NZ_CP015173|CRISPRCasFinder matches to position: 977221-977251, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgtattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattgcc	Protospacer
************************.******

25. spacer 7.2|1485217|18|NZ_CP015173|CRT matches to position: 206906-206923, mismatch: 1, identity: 0.944

tttcttttcgaaattctc	CRISPR spacer
tttctttttgaaattctc	Protospacer
********.*********

26. spacer 7.2|1485217|18|NZ_CP015173|CRT matches to position: 977196-977213, mismatch: 1, identity: 0.944

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaatttctc	Protospacer
************ *****

27. spacer 7.2|1485217|18|NZ_CP015173|CRT matches to position: 1598550-1598567, mismatch: 1, identity: 0.944

tttcttttcgaaattctc	CRISPR spacer
tttcttttagaaattctc	Protospacer
******** *********

28. spacer 7.2|1485217|18|NZ_CP015173|CRT matches to position: 1798321-1798338, mismatch: 1, identity: 0.944

tttcttttcgaaattctc	CRISPR spacer
tttctttttgaaattctc	Protospacer
********.*********

29. spacer 7.2|1485217|18|NZ_CP015173|CRT matches to position: 2010307-2010324, mismatch: 1, identity: 0.944

tttcttttcgaaattctc	CRISPR spacer
tttcttatcgaaattctc	Protospacer
****** ***********

30. spacer 7.2|1485217|18|NZ_CP015173|CRT matches to position: 2055798-2055815, mismatch: 1, identity: 0.944

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaaaatctc	Protospacer
************* ****

31. spacer 7.2|1485217|18|NZ_CP015173|CRT matches to position: 2352778-2352795, mismatch: 1, identity: 0.944

tttcttttcgaaattctc	CRISPR spacer
tttctttacgaaattctc	Protospacer
******* **********

32. spacer 7.2|1485217|18|NZ_CP015173|CRT matches to position: 2353011-2353028, mismatch: 1, identity: 0.944

tttcttttcgaaattctc	CRISPR spacer
tttctttacgaaattctc	Protospacer
******* **********

33. spacer 7.2|1485217|18|NZ_CP015173|CRT matches to position: 2650982-2650999, mismatch: 1, identity: 0.944

tttcttttcgaaattctc	CRISPR spacer
tttcctttcgaaattctc	Protospacer
****.*************

34. spacer 7.3|1485275|19|NZ_CP015173|CRT matches to position: 196102-196120, mismatch: 1, identity: 0.947

attggaaatccaatttctc	CRISPR spacer
attgggaatccaatttctc	Protospacer
*****.*************

35. spacer 7.3|1485275|19|NZ_CP015173|CRT matches to position: 1439039-1439057, mismatch: 1, identity: 0.947

attggaaatccaatttctc	CRISPR spacer
attgggaatccaatttctc	Protospacer
*****.*************

36. spacer 7.3|1485275|19|NZ_CP015173|CRT matches to position: 2005940-2005958, mismatch: 1, identity: 0.947

attggaaatccaatttctc	CRISPR spacer
attgggaatccaatttctc	Protospacer
*****.*************

37. spacer 7.3|1485275|19|NZ_CP015173|CRT matches to position: 2641690-2641708, mismatch: 1, identity: 0.947

attggaaatccaatttctc	CRISPR spacer
attgggaatccaatttctc	Protospacer
*****.*************

38. spacer 7.3|1485275|19|NZ_CP015173|CRT matches to position: 2742700-2742718, mismatch: 1, identity: 0.947

attggaaatccaatttctc	CRISPR spacer
attgggaatccaatttctc	Protospacer
*****.*************

39. spacer 7.3|1485275|19|NZ_CP015173|CRT matches to position: 2742817-2742835, mismatch: 1, identity: 0.947

attggaaatccaatttctc	CRISPR spacer
attgggaatccaatttctc	Protospacer
*****.*************

40. spacer 8.1|1492452|32|NZ_CP015173|CRISPRCasFinder matches to position: 2006003-2006034, mismatch: 1, identity: 0.969

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaaactgactttccgc	Protospacer
*******************.************

41. spacer 9.1|1528260|34|NZ_CP015173|CRISPRCasFinder matches to position: 2005925-2005958, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

42. spacer 12.1|2275331|33|NZ_CP015173|CRISPRCasFinder matches to position: 2005926-2005958, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** ************

43. spacer 3.1|206947|31|NZ_CP015173|CRISPRCasFinder matches to position: 196146-196176, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

44. spacer 3.1|206947|31|NZ_CP015173|CRISPRCasFinder matches to position: 371371-371401, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

45. spacer 3.1|206947|31|NZ_CP015173|CRISPRCasFinder matches to position: 755971-756001, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

46. spacer 3.1|206947|31|NZ_CP015173|CRISPRCasFinder matches to position: 1052533-1052563, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

47. spacer 3.1|206947|31|NZ_CP015173|CRISPRCasFinder matches to position: 1313552-1313582, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

48. spacer 3.1|206947|31|NZ_CP015173|CRISPRCasFinder matches to position: 1528572-1528602, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

49. spacer 3.1|206947|31|NZ_CP015173|CRISPRCasFinder matches to position: 1694540-1694570, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

50. spacer 3.1|206947|31|NZ_CP015173|CRISPRCasFinder matches to position: 1798265-1798295, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

51. spacer 3.1|206947|31|NZ_CP015173|CRISPRCasFinder matches to position: 2005884-2005914, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

52. spacer 3.1|206947|31|NZ_CP015173|CRISPRCasFinder matches to position: 2094317-2094347, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

53. spacer 3.1|206947|31|NZ_CP015173|CRISPRCasFinder matches to position: 2289969-2289999, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

54. spacer 4.1|854292|33|NZ_CP015173|CRISPRCasFinder matches to position: 2094273-2094305, mismatch: 2, identity: 0.939

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tggaccccaacaaagagaaattgtattcccaat	Protospacer
***.******************* *********

55. spacer 6.1|1479740|31|NZ_CP015173|CRISPRCasFinder matches to position: 977166-977196, mismatch: 2, identity: 0.935

ctgtgttggggccccgccaacttgtattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattacc	Protospacer
************************.***.**

56. spacer 6.1|1479740|31|NZ_CP015173|CRISPRCasFinder matches to position: 2352914-2352944, mismatch: 2, identity: 0.935

ctgtgttggggccccgccaacttgtattgcc	CRISPR spacer
ctgtgttggggccccgccaacttccattgcc	Protospacer
*********************** .******

57. spacer 7.1|1485158|19|NZ_CP015173|CRT matches to position: 196160-196178, mismatch: 2, identity: 0.895

ctgacttatcgtaagcttc	CRISPR spacer
ctgacttttcgtcagcttc	Protospacer
******* **** ******

58. spacer 7.1|1485158|19|NZ_CP015173|CRT matches to position: 1052531-1052549, mismatch: 2, identity: 0.895

ctgacttatcgtaagcttc	CRISPR spacer
ctgacttttcgtcagcttc	Protospacer
******* **** ******

59. spacer 7.1|1485158|19|NZ_CP015173|CRT matches to position: 1313550-1313568, mismatch: 2, identity: 0.895

ctgacttatcgtaagcttc	CRISPR spacer
ctgacttttcgtcagcttc	Protospacer
******* **** ******

60. spacer 7.1|1485158|19|NZ_CP015173|CRT matches to position: 1694554-1694572, mismatch: 2, identity: 0.895

ctgacttatcgtaagcttc	CRISPR spacer
ctgacttttcgtcagcttc	Protospacer
******* **** ******

61. spacer 7.1|1485158|19|NZ_CP015173|CRT matches to position: 1798263-1798281, mismatch: 2, identity: 0.895

ctgacttatcgtaagcttc	CRISPR spacer
ctgacttttcgtcagcttc	Protospacer
******* **** ******

62. spacer 7.1|1485158|19|NZ_CP015173|CRT matches to position: 2005882-2005900, mismatch: 2, identity: 0.895

ctgacttatcgtaagcttc	CRISPR spacer
ctgacttttcgtcagcttc	Protospacer
******* **** ******

63. spacer 7.1|1485158|19|NZ_CP015173|CRT matches to position: 2094331-2094349, mismatch: 2, identity: 0.895

ctgacttatcgtaagcttc	CRISPR spacer
ctgacttttcgtcagcttc	Protospacer
******* **** ******

64. spacer 7.1|1485158|19|NZ_CP015173|CRT matches to position: 2640289-2640307, mismatch: 2, identity: 0.895

ctgacttatcgtaagcttc	CRISPR spacer
ctgacttttcgtcagcttc	Protospacer
******* **** ******

65. spacer 7.2|1485217|18|NZ_CP015173|CRT matches to position: 1452711-1452728, mismatch: 2, identity: 0.889

tttcttttcgaaattctc	CRISPR spacer
ttcctttttgaaattctc	Protospacer
**.*****.*********

66. spacer 7.2|1485217|18|NZ_CP015173|CRT matches to position: 1798376-1798393, mismatch: 2, identity: 0.889

tttcttttcgaaattctc	CRISPR spacer
tttctttttgaatttctc	Protospacer
********.*** *****

67. spacer 7.2|1485217|18|NZ_CP015173|CRT matches to position: 2587704-2587721, mismatch: 2, identity: 0.889

tttcttttcgaaattctc	CRISPR spacer
tttcttttcaaaagtctc	Protospacer
*********.*** ****

68. spacer 7.3|1485275|19|NZ_CP015173|CRT matches to position: 1452655-1452673, mismatch: 2, identity: 0.895

attggaaatccaatttctc	CRISPR spacer
attgaaaatcaaatttctc	Protospacer
****.***** ********

69. spacer 7.3|1485275|19|NZ_CP015173|CRT matches to position: 1792785-1792803, mismatch: 2, identity: 0.895

attggaaatccaatttctc	CRISPR spacer
attggtgatccaatttctc	Protospacer
***** .************

70. spacer 7.3|1485275|19|NZ_CP015173|CRT matches to position: 2055912-2055930, mismatch: 2, identity: 0.895

attggaaatccaatttctc	CRISPR spacer
attaggaatccaatttctc	Protospacer
***.*.*************

71. spacer 7.3|1485275|19|NZ_CP015173|CRT matches to position: 2094273-2094291, mismatch: 2, identity: 0.895

attggaaatccaatttctc	CRISPR spacer
attgggaatacaatttctc	Protospacer
*****.*** *********

72. spacer 7.3|1485275|19|NZ_CP015173|CRT matches to position: 2640233-2640251, mismatch: 2, identity: 0.895

attggaaatccaatttctc	CRISPR spacer
attgtagatccaatttctc	Protospacer
**** *.************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP015173_2 2.1|97428|34|NZ_CP015173|CRISPRCasFinder 97428-97461 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NZ_CP015173_2 2.1|97428|34|NZ_CP015173|CRISPRCasFinder 97428-97461 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765

1. spacer 2.1|97428|34|NZ_CP015173|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

2. spacer 2.1|97428|34|NZ_CP015173|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1416950 : 1424771 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 1436742 : 1451327 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 1623997 : 1676012 52 Streptococcus_phage(33.33%) bacteriocin,tRNA,protease NA
DBSCAN-SWA_4 1696050 : 1704523 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_5 2265910 : 2348992 110 Staphylococcus_phage(71.25%) plate,portal,terminase,integrase,tail,holin,tRNA,head,capsid,transposase attL 2290153:2290174|attR 2352708:2352729
DBSCAN-SWA_6 2368101 : 2377144 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_7 2500257 : 2557961 54 Staphylococcus_phage(95.35%) tRNA,protease NA
DBSCAN-SWA_8 2653003 : 2747691 114 Staphylococcus_phage(85.71%) portal,terminase,protease,integrase,tail,holin,tRNA,head,capsid attL 2650957:2650981|attR 2749899:2749923
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP015173.1|WP_063125012.1|2341225_2341669_-|hypothetical-protein 2341225_2341669_- 147 aa aa NA NA NA 2265910-2348992 yes
NZ_CP015173.1|WP_000681968.1|2690221_2690398_-|hypothetical-protein 2690221_2690398_- 58 aa aa NA NA NA 2653003-2747691 yes
NZ_CP015173.1|WP_000990056.1|2690640_2690739_-|hypothetical-protein 2690640_2690739_- 32 aa aa NA NA NA 2653003-2747691 yes