CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015065	Mesorhizobium ciceri biovar biserrulae strain WSM1284 plasmid pMc1284, complete sequence	0 crisprs	csa3	0	0	1	0
NZ_CP015064	Mesorhizobium ciceri biovar biserrulae strain WSM1284 chromosome, complete genome	7 crisprs	cas3,csa3,WYL,DEDDh	0	1	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

152190 : 193471

Ochrobactrum_phage(22.22%)

transposase,plate,integrase

attL 142751:142768|attR 197534:197551

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
142751:142768	attL	NA	NA	NA	NA
WP_063173896.1\|152190_153834_-\|transposase	Mu transposase C-terminal domain-containing protein	NA	NA	NA	NA
WP_082827608.1\|153919_155137_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_063173898.1\|155160_155679_-	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_013525331.1\|155675_156065_-	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_063173899.1\|156251_157457_-	replication initiation protein RepC	L7TKN6	Rhizobium_phage	3.6e-18	23.9
WP_013525329.1\|157610_158576_-	plasmid partitioning protein RepB	A0A240F4U0	Ochrobactrum_phage	3.2e-62	42.5
WP_013525328.1\|158653_159856_-	plasmid partitioning protein RepA	A0A240F4U1	Ochrobactrum_phage	6.7e-150	67.1
WP_027163180.1\|161866_162577_+	transcriptional regulator NanR	NA	NA	NA	NA
WP_063173900.1\|162573_162879_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_013525325.1\|162929_163706_+	hpch/hpai aldolase	NA	NA	NA	NA
WP_013525324.1\|163720_164773_+	dehydrogenase	M1I4S0	Paramecium_bursaria_Chlorella_virus	4.2e-23	35.4
WP_063173902.1\|164888_166544_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_063173903.1\|166648_167590_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_063173904.1\|167589_168438_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_063173905.1\|168450_169545_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G3M9Y6	Bacillus_virus	1.0e-24	33.3
WP_082827609.1\|169541_171521_+	hypothetical protein	NA	NA	NA	NA
WP_063173907.1\|171723_173937_-	EAL domain-containing protein	G3MA91	Bacillus_virus	1.1e-20	32.8
WP_063173908.1\|174098_174380_+	hypothetical protein	NA	NA	NA	NA
WP_082827646.1\|174641_177278_-	EAL domain-containing protein	A0A2D0W9B6	Bordetella_phage	5.6e-08	38.9
WP_013525315.1\|177688_177889_-	hypothetical protein	NA	NA	NA	NA
WP_082827647.1\|178455_178941_-	hypothetical protein	A3EYX3	Salmonella_phage	1.2e-22	67.1
WP_167355204.1\|179018_179270_-	hypothetical protein	NA	NA	NA	NA
WP_063174083.1\|179697_182463_-	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	2.9e-84	27.6
WP_063173910.1\|182790_183963_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_013525309.1\|183969_184509_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_024504477.1\|184511_186017_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_013525307.1\|186063_186522_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_013525306.1\|186508_187264_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_063173911.1\|187265_189140_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_063173912.1\|189103_190171_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_063173913.1\|190167_191640_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_063173914.1\|191643_192096_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_013525301.1\|192136_193471_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
197534:197551	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP015064

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015064_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015064_1

1739202-1739276

Orphan

Consensus_repeat	Method
ACGGTGGCTTTCATGCCGCTACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015064_1

>merge|NZ_CP015064|1|1739202-1739276|CRISPRCasFinder
ACGGTGGCTTTCATGCCGCTACCCACAGCCCGCAATTGCGGCGATATCCGAAACGGTGGCTTTCATGCCGCTACC

>NZ_CP015064|1|1|1739202-1739276|CRISPRCasFinder
ACGGTGGCTTTCATGCCGCTACC	CACAGCCCGCAATTGCGGCGATATCCGAA
ACGGTGGCTTTCATGCCGCTACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015064.1\|WP_082827345.1\|1724966_1725845_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP015064.1\|WP_027163813.1\|1747040_1748111_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270306
NZ_CP015064.1\|WP_013532880.1\|1726925_1728590_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173868
NZ_CP015064.1\|WP_063173617.1\|1733605_1736782_-\|multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP015064.1\|WP_063171629.1\|1743920_1745201_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_CP015064.1\|WP_024502610.1\|1730023_1731130_-\|mandelate-racemase/muconate-lactonizing-enzyme-family-protein	unknown	unknown	gnl\|CDD\|227284
NZ_CP015064.1\|WP_027163814.1\|1746186_1747056_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NZ_CP015064.1\|WP_013532876.1\|1732438_1733590_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP015064.1\|WP_174564964.1\|1725841_1726825_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223674
NZ_CP015064.1\|WP_013532870.1\|1739350_1740142_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP015064.1\|WP_027164193.1\|1748882_1749968_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP015064.1\|WP_013532868.1\|1741246_1742182_-\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380621
NZ_CP015064.1\|WP_013532869.1\|1740145_1741132_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP015064.1\|WP_013532873.1\|1737271_1737862_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP015064.1\|WP_063171628.1\|1742525_1743683_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|226479
NZ_CP015064.1\|WP_063171630.1\|1748284_1748893_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380339
NZ_CP015064.1\|WP_013532877.1\|1731165_1731858_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP015064.1\|WP_024502614.1\|1736775_1737030_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015064.1\|WP_063171625.1\|1728837_1730022_-\|mandelate-racemase/muconate-lactonizing-enzyme-family-protein	unknown	unknown	gnl\|CDD\|227284
NZ_CP015064.1\|WP_027163815.1\|1745305_1746190_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224097

Protein	Function_ID	Function_description	E-value
NZ_CP015064.1\|WP_082827345.1\|1724966_1725845_-\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.8181e-88
NZ_CP015064.1\|WP_013532880.1\|1726925_1728590_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173868	cd08503, PBP2_NikA_DppA_OppA_like_17, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	5.32393e-166
NZ_CP015064.1\|WP_063173617.1\|1733605_1736782_-\|multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP015064.1\|WP_063171629.1\|1743920_1745201_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	1.95054e-51
NZ_CP015064.1\|WP_024502610.1\|1730023_1731130_-\|mandelate-racemase/muconate-lactonizing-enzyme-family-protein	gnl\|CDD\|227284	COG4948, COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only].	2.02248e-70
NZ_CP015064.1\|WP_027163814.1\|1746186_1747056_+\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	1.87052e-71
NZ_CP015064.1\|WP_013532876.1\|1732438_1733590_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	9.30936e-72
NZ_CP015064.1\|WP_174564964.1\|1725841_1726825_-\|ABC-transporter-permease-subunit	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.03122e-99
NZ_CP015064.1\|WP_013532870.1\|1739350_1740142_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	9.86356e-109
NZ_CP015064.1\|WP_027164193.1\|1748882_1749968_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	4.1835e-149
NZ_CP015064.1\|WP_013532868.1\|1741246_1742182_-\|substrate-binding-domain-containing-protein	gnl\|CDD\|380621	cd19966, PBP1_ABC_sugar_binding-like, monosaccharide ABC transporter substrate binding protein CUT2 family and simialr proteins. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.	5.27178e-91
NZ_CP015064.1\|WP_013532869.1\|1740145_1741132_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	4.97632e-81
NZ_CP015064.1\|WP_013532873.1\|1737271_1737862_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	4.24784e-11
NZ_CP015064.1\|WP_063171628.1\|1742525_1743683_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|226479	COG3970, COG3970, Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only].	0
NZ_CP015064.1\|WP_063171630.1\|1748284_1748893_+\|cupin-domain-containing-protein	gnl\|CDD\|380339	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain. This family contains transcriptional regulators containing an N-terminal XRE (Xenobiotic Response Element) family helix-turn-helix (HTH) DNA-binding domain and a C-terminal cupin domain. Included in this family is Escherichia coli transcription factor SutR (YdcN) that plays a regulatory role in sulfur utilization; it regulates a set of genes involved in the generation of sulfate and its reduction, the synthesis of cysteine, the synthesis of enzymes containing Fe-S as cofactors, and the modification of tRNA with use of sulfur-containing substrates. This family belongs to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	1.87761e-31
NZ_CP015064.1\|WP_013532877.1\|1731165_1731858_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	4.53317e-38
NZ_CP015064.1\|WP_027163815.1\|1745305_1746190_+\|ABC-transporter-permease	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	8.98699e-87
NZ_CP015064.1\|WP_063171625.1\|1728837_1730022_-\|mandelate-racemase/muconate-lactonizing-enzyme-family-protein	gnl\|CDD\|227284	COG4948, COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only].	3.4125e-84
NZ_CP015064.1\|WP_027163813.1\|1747040_1748111_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270306	cd13588, PBP2_polyamine_1, The periplasmic-binding component of an uncharacterized ABC transporter involved in uptake of polyamines; contains the type 2 periplasmic binding fold. This group represents the periplasmic binding domain that functions as the primary high-affinity receptor of an uncharactertized ABC-type polyamine transport system. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.9195e-109

>NZ_CP015064.1|WP_013532873.1|1737271_1737862_+|TetR/AcrR-family-transcriptional-regulator
MADGIVERSRPRDRILETARDMFHKHGIKGVGVDAITEAAGTNKMTLYRHFESKDELIVECLRANAAKAGAMWEAFEAEFPGDKLAQLHAWVRKAAAMLNADGRGCDMANAAAELTEPDHPARLVIKELKEAQRARLVTLCRDAGIGQAELLADTLSLLFEGARVSVQTVGTEGPSTQFVRMAEGLIVSFRGAAAG
>NZ_CP015064.1|WP_024502614.1|1736775_1737030_-|hypothetical-protein
MPQRRDLTIDEAVRDPMIRLVMKADGVDPRAFETMLRSLADTQRGEVPLLRSRDGLGDKRGQRLSRVASAFGRATAAGEACVSW
>NZ_CP015064.1|WP_063173617.1|1733605_1736782_-|multidrug-efflux-RND-transporter-permease-subunit
MVNFFIHRPIFASAIAIIMVLAGSICYFLLPVSQFPDITPPQVVVSAHYPGASAQVVADTVTTPLEQQINGVQGMTYMSSTSSNDGSSTITITFDVGYSLSTAAVDVQNRVSQAASSLPAIVNQGGVTIKKQNPNFVLIVNLTSPDSSVDPVALSNLAYLQVVDPLKRLPGVGDVQIFGERRYSMRVWLDPDKLANLGITAVDVQNAIAEQNVQVAAGKIGQSPAPAGTAFEMQVNAVGRLSDPKEFGDIVVRANTDTGSLVRLRDVARIELGALQYSSSAFFGKDPTVVLAVYQMPGSNALDLQQRVKDKMQELSGRFPKGVSYAMHYDTTRFVSASMHDVLITLGEALVLVVAVVFLFLQSWRTTIIPTIAIPVSLVATLVVMEMFGFSLNMLSLLGMVLAIGLVVDDAIVVVENVERQLEAGLKPLAATKAAMSEVTGPIIATTAVLMAVFVPVAFIPGVSGKLYNQFALTVAISVGISAFNSLTLSPALSAAFLRHRGETQFAPFRWFNTGFDRLSRAYANGVRILIRLRWIMLGLFAAGLVATYFVWQRLPSTFLPVEDQGYFFVVIQLPDGASLERTDAVAQKARDILQATPGVDIVGSISGLNFLTSAAQSNSAVEFAILKPWEERGPDQSASKLVADVRGKLMQIPEAFALSFDPPSIPGIGTTGGFEFVVEDLTGRGSSALNDATQAVIAEARKQPEINPQQLFSPFSTSTPQFNYDLDRSKAKLLGLNLPDVFNTLQIYLGSLYVNDFNLFGRTFRVTIQADKDARAGAADISRLYVRNASGGMVPLSTLGKLVPFVGPETVPHYNNNASASINGGAAPGFSSGQAVAAMERAAATALPRDFGFEWTGITFQELKAGSIASVVFGLAIVFVFLILAMQYESWAMPFMVLLAVPLALFGAFAALLLRGMQIDVYSQIGFVMLIGLAAKNAILIVEFARRRREEGLSIVDAAMEAARLRLRPILMTAFAFILGVLPLMFATGAGAASRQSIGTTVFGGMVAATILSLVFVPVFYAVIEQLRERRGKDEPASQDNEPTAEHALPPLAEAAE
>NZ_CP015064.1|WP_013532876.1|1732438_1733590_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MRKWKIALGTAVALGAISVASVHLLDMGNLSLNAGTAGAAPAPAAFVMPVPVVSVVKKTIPIYLDYAARTEPIRSITLQARIPGYLQEQTAADGVDVRQGDLLYKISPDDFQAALDQAKAQVQRDTATLDYARSNLGRGTELAKSGYLAKDGFDQRTSTLREAQASLALNQAAVRTAELNLSYAEIRAPFAGRLGRNQASVGTLVSVAGTVLNTLVQLDPIYVTFNPSETDLTEIEQARANGPIEVDVLLPGQTEASQKGELTFIDNSVDRSTGTITARATIGNGKFTLLPGQYVRVRLHVREQADALMVPQTALGSSQLGKYLYVVGKGNTVDQRLVSLGPTSGDQVAILSGVAEGDQVITGNLQKIGPGAPVSPIPEKPAT
>NZ_CP015064.1|WP_013532877.1|1731165_1731858_-|GntR-family-transcriptional-regulator
MAKADFSPIADTTRRAEIVALLRRAILTGQLAPGQKLNELRISEQMRVSRAPLREAMRELVQEGILTSIPYAGTFVIEVTAKDIDDAYSFNKVMDELAIERAWPLRDQRFFDELDRRHEAVKQATRALDTTRQIETALQLHGLIYEWADNSVLLETWQRLTSRLQMYFALHQHARNEPVPAEDVHETYVRLLKGKDMRAAQCHAREHIDLDFEELLAYARGLEQRPSRGA
>NZ_CP015064.1|WP_024502610.1|1730023_1731130_-|mandelate-racemase/muconate-lactonizing-enzyme-family-protein
MQIETIKAYHVMQPFVDGPYRMSKGREADAFDAVIVSMTSDSGITGWGEMAPLGNFYSAAFPAGVRAGVVEIAPHLIGRDPRGLASIGRLMDTVFKGHPYIKSALDMACWDLAARAADVPLVTLLGGKESDTAELYKVVTHGSVDAMAALAKRIVKDGFHRLQVKVGGNVHDDIERVIAVASSVPKGTVIFCDANAGWTPYQARQFADATRAIDYTFEQPCTTIDENMSVRRMLDKPMVLDESVTSLEAMLEIHRLGAADGLTLKISRLGGVTKTRQIRDIAVDLGFMITVEDTGGAEIDTAAMAHLSLSTPEERRLHAIAFHEWVTVRTASNMPPVTGSRMGIPDGPGLGIDVVPDLLGAPFFEVGR
>NZ_CP015064.1|WP_063171625.1|1728837_1730022_-|mandelate-racemase/muconate-lactonizing-enzyme-family-protein
MKIRSIKATPINLRLEAPYAWVFGELDGFSPTVVEVETEDGLVGLGEAPTPAAAAIINDVLAPRLVGRDAFDIAGAEHVCLPFWTGVQSINDRTRIMAFGAIEMASWDLRGKAWNQPLYQLLGGAVRKDIPFTDYFSLRGDGPNVKGETTPQEVADYCVELHETHGTTFFEGKFSTEDPKISLRMVELIRRKLGDDAMIRIDSNQAYSLSTARRLARPLEELGVRNWEDPVATIEEMRELRRHCSIPFSTHNIDIARAMETKVPDAFVGNPTTHGGIGRLLRFVGACEHAGIDFWCYSGDSGIGSAAYLHLCAALGWIREPNQSLFRMLPMDVTEEGPFSPKNNVVRVPEGPGLGVTLSRENLAACHRDFTEKGPCNKYHDPAKPGTYRRLPLN
>NZ_CP015064.1|WP_013532880.1|1726925_1728590_-|ABC-transporter-substrate-binding-protein
MSKNHSILDLIRRNRTPLENHLIDGLVDGRVSRRDFVRHGSLLGLSLPLLGRIGMAAGLGGMPSLARAQGAPGATIRVASSVPAATIDPVSIADAGGLLIMQQVAEFLCVDGPDLVLQPALAESWKPNDNGTVWTFKLRKGVKFHSGGEMKADDVVASIDRLADPANSSNALSVFTGILQKGASKKVDDYTVEFHLDAPNGNFPYMLSSDNYNAVIIPASYKGDYEKSFDGTGPFRIEKYTAKVGASFVRNEDYWGPKALPERTEFTFFTDMQPQILALQGGQVDIINQMPVLAGVALLNDPNIDIISLKSSAHQQLHMRCDEGPLKDARVRRAIALCLDRDKLAAGLMKGRSALGNDSPFAAVYPSTDTSVPQRKQDIAQAKQLMEAAGLGQGFKITLTTERYLEIPEYAQLIQNWVKEIGVELDLNILDQSGYYGDAVFGKSNWLDSVMGITDYGHRGVPNVYLAAPLKSEGTWNAAHFKNKDYDALATSYIAALDLEAQKADAGKIQKLLLEETPVIFGYFYDYLTATAKGVAGVQPTAMSQLFLDKASKA
>NZ_CP015064.1|WP_174564964.1|1725841_1726825_-|ABC-transporter-permease-subunit
MGLAPQGVLAILSFLARRVSLSLVTLFLLSIMVFLGGQVLPGNVGRAILGPFADQRAVDALNHTLGVDRPLLAQYWGWISNFVQGDMGTSYIFRSPVAPFVVDALGNSMKLAAVAFVLVVPIGILGGVVAALNLNRPLDRIISLGGLSVTVLPEFVTGIILILIFGVWLRWLPISAAWPRDAGFFTQLYYLILPSLPLFLVLFGYIARMARSGMIEALDSDYTRTAVLKGLPWRTVIWRHVLRNALLPTITVIATQTGYLIGGLVVIETLFRYQGIGSLIFTAARGKDFPMLESGILTIGIVYAVATLVADFLYSVLNPRIRLGSDQ
>NZ_CP015064.1|WP_082827345.1|1724966_1725845_-|ABC-transporter-permease
MSTIQTTSPTPDDTRPRGPLAEVFFSLLRSRTFLVGFAIVLFWVACALFGEHFAPYDPLADDIINALAPPSSEHWFGTDQIGRDVFSRVIVGSRDILTVAPLATLLATVAGTALGLVTGYFRGLVDDVVSRILEAFMAIPVVIVALLAIVALGTSKTTVIVVIGLSFAPIIARTVRSAVLAERELDYVAAAQLRHESALHTMFVEILPNVIPPILVETTVRLGYAIFAVATLSFMGFGIQPPSPDWGLSISNNYGMIGGGFWWTVLFDALAIASLVIGVNLAADGVHGALND
>NZ_CP015064.1|WP_013532870.1|1739350_1740142_-|sugar-ABC-transporter-ATP-binding-protein
MAEPLIRMTNIRKSYGRVQALEDANFHVNEREIVGLLGDNGAGKSTLIKVLSGAVPLTSGDIFIRGKKVSLRSTSDAIAHGIETIYQDSALVTQLSIARNLFLGREPIKPPRFLNRMDQEAMNTVARDLLKQVGISKNIPPTTPIGSLSGGERQAVAIARAMHFDSDLIILDEPTNNLGVAETQGVLSFVRSARDSGHSCIFIAHNIHHVFQVVDRIVVMRRGKVVADDIDPKTTSVAEVERIITGMSDKEIRDAITDGKPSH
>NZ_CP015064.1|WP_013532869.1|1740145_1741132_-|ABC-transporter-permease
MENHSLVPRLIARPEFGPFVLLVVEIAVFWSFNHDFLSPQNISNTLAFTVELGLIALAMTLLMTSGEFDLSVGSLFGFSPVLMWTLFNSGLTSLEAGFVAALLVAAFIGLVNGWFVTQLKIPSFLVTLGMLLVVRGTALFVTDGFPQRTWSAEGSWLAEALVGDFFIGPFRIYMSLFWFIAAAIALGYVLTQSRTGNWIQAAGGNPSAARARGVNVSGVKIGLFVLSSVMASLAGVISSLRTSAANPNSGTGYELEVIAMVVIGGTALTGGRGTIIGTVLGILILRVMRNGIVLIGVPGLAYNIFIGAIILGMMALHSWLERRHQAGT
>NZ_CP015064.1|WP_013532868.1|1741246_1742182_-|substrate-binding-domain-containing-protein
MLTRLRLVLYGLLVALMVVPAAAQAKTFYWISHGGPADPVWTYFLAGAKQWAKDTGNTVNTSFHNGDVASQQEAVRAALSAKADGIVTTSPDPGSLIEIVKEARAAKVPIINFNTPDPKADFNAYVGGDNVTFGKHWAQYLVDKGLVKKGDFVWMPVEIPGATYGVQEEEGIKSVFEPLGITYEITEATLDQAEVINRMVDYLTANKAKVKAIIGLGDLVTGSIKRVFDQVGIKPGEIPVVGWGNSLDTTQEVLNGYVNAGQWQDPQATSYVALSLANMAAGGIPPGFNVITGALYEKDTAQIYDDILSGK
>NZ_CP015064.1|WP_063171628.1|1742525_1743683_-|fumarylacetoacetate-hydrolase-family-protein
MTNPTHLPSEGLFVGRARSSGAAYPLVVTVRDGTVFDITSRTAPTMRDLCEMADPAGHVRSAEGRPIGSLDDIAANSFETGRDPAKPYLLSPVDLQAVKASGVTFVVSLLERVIEEQARGSAEKADAIRADIAGLIGHDLSKLKPGSPEAMEIKAKLISRGAWSQYLEVGIGPDAEIFTKCQPMASVGFGADVGLHPVSTWNNPEPEIAMIAASSGRIVGATIGNDVNLRDVEGRSALLLGKAKDNNASASLGPFIRLFDDKFSIDDVKRAVVRLKVEGEDGFSLEGASSMAEISRSPEELVAAAMGLHHQYPDGLALYLGTMFVPSKDRGEKGKGFTHKVGDIVTISSEKFGALVNRVQLSPDCPHWTYGASHLMRELARADLI
>NZ_CP015064.1|WP_063171629.1|1743920_1745201_+|FAD-binding-oxidoreductase
MATAFSDPIWRRPQAASTFQSLPNGERVDLAIVGGGIMGLSTALHAARLGLSVQVLDAGEIGQGASGLNGGQVIPGLKYDPEWLLEHFGPERGEALVNFAASTADAVFELIRDENLAVPFVRSGWIQAAHTEAALKAATNRDRQWHARGADVRLLNAEETAARTGAQGYLGGWLDRRAGVIDPLAYTSELARVGTATGVRIAERQRVVRLANAAGVWRVSTENGLELQAKAVVLATNAYTDGLIPGLAQTIVPLHSFQIATAPLPSNLAATILPEGQAVSDSRRILVYYRKSADGRLVLGGRGRMALPTSAGDWAHLEHALVRLYPSLSGVPIEKRWFGRVAMTPDHLPHIHEPEKGLLAVVGCQGRGVGLMTALGERIAGYLQSGDARQLPFPVSPIRPIPFHAFRQVGVAATIAWYRLLDALER
>NZ_CP015064.1|WP_027163815.1|1745305_1746190_+|ABC-transporter-permease
MSTLVATSAPEARSSQGFRVAMLLPGALVTLLLILFALGLVLFLAFRGNDGSLLGAGFTVANFATVVSDPLYWTVTLRSLIIAALVTLATVVTAYPVAYYLAFHTGRRRGLLLFLVTLPFWTSYLLRVFAWKIVLAYNGVLNSALIESGIWSEPTLAFLNTPAAVVVTLAHAYAPFAILPIYVALDTIPKSLIEAASDLGARPFTSFRRIVLPNSMPGVLAAALVVFVPTVGDYVTPALVGGPASTMIGTLIQAQFGKANDWPFGAALSVAVMLVILCVVLVARFADRRFGSRT
>NZ_CP015064.1|WP_027163814.1|1746186_1747056_+|ABC-transporter-permease
MSTARTQGGGRWLGMYVAAYLVFLYLPVLLIPLFSFNNSIQAAFPLQGFTLQWYATLFGNSALTGALLNSLAIGAIAATGATLCGITVSYMDLYGRSPLAATISAIARLPILIPGVIVGISLLILINLVGLGPSRVAIVLGHILVALPTTVVIMRSRFAAIPKTIREAALDLGASDWTTFRRVMLPLSLPAIVSAFMLAFLISFDEFIVVFFLAGTEPTLPLYIWSQLRFPRSLPTVMALGTSILAVSFVIAAAAEILRHRGLSATAPKPADPSQPKQTKRGELQWHST
>NZ_CP015064.1|WP_027163813.1|1747040_1748111_+|ABC-transporter-substrate-binding-protein
MAFDLKSISAKTVCAGLTAFALALSSTVAFAGDKLQYFTWSGYELPDFNKSFLAAHPDGVEASIFGDDDDAFTKVKAGFRPDIAHPCYDKVARWNKEGLLQPIDTKRIKNWDSIFPVFKNLPDLQAGDGKVWMVPWDWGNTSILYRTDLVKNPEASWNLLWDKQYAGRMATIDAVHDTPVVAALLAGVNPFDMTPEQMDKVAEKLREQRPLLSNYTTDMTSVEQALASGQLVAAMTWNASATSLKKQGVSVEFMKPKEGMLTWACGFVMLKDAKNVDLAYDFINSRLETDSGKYLIEAYGYGSSTSSAFAAVPKEELEKLQLPSDPEVMLKTTIFTGPMKQNDDLAKMFEKVKAGG
>NZ_CP015064.1|WP_063171630.1|1748284_1748893_+|cupin-domain-containing-protein
MDMLDEAAGKPKDDADVRVGRRVRALRLERNLSLADLAAKAGVSIGALSQIERGMSSLRVKVIWPLAAALDIEPSALIADGSDTANDLYCVRADKRRQIPVKSEGIAKALLSPPGATLTGMLVTVEAGGGTAEAYAHAGHEFGFVLAGEVELVVDSTKYGLKAGDSFAFKSTLLHAFRNPGAERCQILWVNTTKPSEVRDGA
>NZ_CP015064.1|WP_027164193.1|1748882_1749968_+|ABC-transporter-ATP-binding-protein
MAPDPLVRLQAVSKIFPGGIVGLDAVDLDIISGEFITLLGPSGCGKTTSLRVIAGFESPSSGKVLLDGRDITALRPFDRPVNTVFQDYALFPHMNVAENVGFGLSLRKLSGAEQAKRTGEALDMVGLADKLGARVSELSGGQRQRVALARAIVCEPRVLLLDEPLSALDAHLREQMQVELKRLQSRLGTTFVMVTHDQTEALSISDRIVVMNKGRIEQIAPPATLYDRPATKFVASFIGTMNLLQSRFVGRDGDRLRFTAGTLPLEAISETGEAPAEGATRTIGVRPEDLLAMTEAAPGTAPARVNSVVFHGRTLRLHAELGQGAPVVIDAPRQAEGFRFQVGDVAHISLRRGANCPVLPG

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Crispr_ID: NZ_CP015064_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015064_2

2295198-2295313

Orphan

Consensus_repeat	Method
CGCCCAATGGCCGCCGAAGGCGAGCGCAAGCCCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015064_2

>merge|NZ_CP015064|2|2295198-2295313|CRISPRCasFinder
CGCCCAATGGCCGCCGAAGGCGAGCGCAAGCCCTATGAAAAGCGCGAAGGACCGCGCAAGCCCTACGCACCGCGCGGCGACCGCCCAATGGCCGCTGAAGGCGAGCGCAAGCCCTA

>NZ_CP015064|2|2|2295198-2295313|CRISPRCasFinder
CGCCCAATGGCCGCCGAAGGCGAGCGCAAGCCCTA	TGAAAAGCGCGAAGGACCGCGCAAGCCCTACGCACCGCGCGGCGAC
CGCCCAATGGCCGCTGAAGGCGAGCGCAAGCCCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015064.1\|WP_063171845.1\|2287623_2288604_+\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP015064.1\|WP_063171847.1\|2290395_2293359_+\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237514
NZ_CP015064.1\|WP_082827371.1\|2303992_2305243_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|234819
NZ_CP015064.1\|WP_063171858.1\|2305849_2307193_+\|TldD/PmbA-family-protein	unknown	unknown	gnl\|CDD\|223389
NZ_CP015064.1\|WP_063171855.1\|2301429_2301972_-\|dihydrofolate-reductase-family-protein	unknown	unknown	gnl\|CDD\|334719
NZ_CP015064.1\|WP_063171842.1\|2282899_2283751_+\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223489
NZ_CP015064.1\|WP_063171854.1\|2300518_2301388_+\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|224666
NZ_CP015064.1\|WP_063170199.1\|2286756_2287617_+\|TIGR01459-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319827
NZ_CP015064.1\|WP_013532362.1\|2288605_2289160_-\|HdeD-family-acid-resistance-protein	unknown	unknown	gnl\|CDD\|225786
NZ_CP015064.1\|WP_013532356.1\|2296939_2297494_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|223813
NZ_CP015064.1\|WP_082827370.1\|2293566_2294238_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015064.1\|WP_063171852.1\|2297616_2299005_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP015064.1\|WP_063171856.1\|2302838_2303879_+\|EF-P-lysine-aminoacylase-GenX	unknown	unknown	gnl\|CDD\|225178
NZ_CP015064.1\|WP_063171849.1\|2294274_2294724_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NZ_CP015064.1\|WP_063171846.1\|2289354_2290161_+\|MipA/OmpV-family-protein	unknown	unknown	gnl\|CDD\|226236
NZ_CP015064.1\|WP_013532351.1\|2302151_2302721_-\|elongation-factor-P	unknown	unknown	gnl\|CDD\|234788
NZ_CP015064.1\|WP_063171843.1\|2283776_2284409_-\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_CP015064.1\|WP_013532348.1\|2305266_2305683_-\|dioxygenase	unknown	unknown	gnl\|CDD\|226095
NZ_CP015064.1\|WP_174564967.1\|2284540_2286526_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|227296
NZ_CP015064.1\|WP_063171853.1\|2299151_2300522_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685

Protein	Function_ID	Function_description	E-value
NZ_CP015064.1\|WP_063171845.1\|2287623_2288604_+\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	6.78146e-144
NZ_CP015064.1\|WP_063171842.1\|2282899_2283751_+\|dienelactone-hydrolase-family-protein	gnl\|CDD\|223489	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	5.08826e-37
NZ_CP015064.1\|WP_082827371.1\|2303992_2305243_+\|FAD-binding-oxidoreductase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	3.36203e-46
NZ_CP015064.1\|WP_063171858.1\|2305849_2307193_+\|TldD/PmbA-family-protein	gnl\|CDD\|223389	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only].	1.04101e-123
NZ_CP015064.1\|WP_063171855.1\|2301429_2301972_-\|dihydrofolate-reductase-family-protein	gnl\|CDD\|334719	pfam01872, RibD_C, RibD C-terminal domain. The function of this domain is not known, but it is thought to be involved in riboflavin biosynthesis. This domain is found in the C-terminus of RibD/RibG, in combination with pfam00383, as well as in isolation in some archaebacterial proteins. This family appears to be related to pfam00186.	6.87483e-28
NZ_CP015064.1\|WP_063170199.1\|2286756_2287617_+\|TIGR01459-family-HAD-type-hydrolase	gnl\|CDD\|319827	cd07525, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	6.79879e-90
NZ_CP015064.1\|WP_063171854.1\|2300518_2301388_+\|patatin-like-phospholipase-family-protein	gnl\|CDD\|224666	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only].	3.76445e-68
NZ_CP015064.1\|WP_013532348.1\|2305266_2305683_-\|dioxygenase	gnl\|CDD\|226095	COG3565, COG3565, Predicted dioxygenase of extradiol dioxygenase family [General function prediction only].	4.72168e-78
NZ_CP015064.1\|WP_013532362.1\|2288605_2289160_-\|HdeD-family-acid-resistance-protein	gnl\|CDD\|225786	COG3247, HdeD, Uncharacterized conserved protein [Function unknown].	1.10924e-32
NZ_CP015064.1\|WP_013532356.1\|2296939_2297494_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	7.94004e-75
NZ_CP015064.1\|WP_063171847.1\|2290395_2293359_+\|isoleucine--tRNA-ligase	gnl\|CDD\|237514	PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.	0
NZ_CP015064.1\|WP_063171852.1\|2297616_2299005_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	7.41063e-114
NZ_CP015064.1\|WP_063171856.1\|2302838_2303879_+\|EF-P-lysine-aminoacylase-GenX	gnl\|CDD\|225178	COG2269, COG2269, Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis].	9.02775e-166
NZ_CP015064.1\|WP_063171849.1\|2294274_2294724_-\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	2.8294e-58
NZ_CP015064.1\|WP_063171846.1\|2289354_2290161_+\|MipA/OmpV-family-protein	gnl\|CDD\|226236	COG3713, OmpV, Outer membrane protein V [Cell envelope biogenesis, outer membrane].	2.86647e-83
NZ_CP015064.1\|WP_013532351.1\|2302151_2302721_-\|elongation-factor-P	gnl\|CDD\|234788	PRK00529, PRK00529, elongation factor P; Validated.	3.94234e-87
NZ_CP015064.1\|WP_063171843.1\|2283776_2284409_-\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	2.55494e-45
NZ_CP015064.1\|WP_174564967.1\|2284540_2286526_-\|pilus-assembly-protein	gnl\|CDD\|227296	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion].	8.35421e-22
NZ_CP015064.1\|WP_063171853.1\|2299151_2300522_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	1.83484e-99

>NZ_CP015064.1|WP_063171849.1|2294274_2294724_-|nucleoside-deaminase
MKRPDFMALALKEAEAAALRGEVPVGAVIANSAGVVASAGNRTRELADPTAHAEMLVIREACRKLSAERLTGHDLYVTLEPCAMCAGAISFARLRRLYFGAADDKGGAVVNGVRFFASPTCHHAPDIYPGMGETEAGLLLKGFFRERRG
>NZ_CP015064.1|WP_082827370.1|2293566_2294238_+|hypothetical-protein
MTERYNARLALLAPLVASGLALSGCMGSPTYGTDKTAGEQLAGDISGAFSFAPKRKEQIDYKPRPTLVKPAPGQKEALPTPQDSIETASAEWPESPEQRRARLRADATAHQNDPAYQSEIVDDVQTDPASVKRAMAESGSSHPPAWTPADSDKGRAAEIQRRLADSKQGDPNTRKYLSEPPVQYRVAAGTAPQNELGEDEYKKERRLKKEAEGKKGSGWFDWL
>NZ_CP015064.1|WP_063171847.1|2290395_2293359_+|isoleucine--tRNA-ligase
MTDTTETIDYSKTLYLPQTDFPMRAGLPEKEPLLVKRWQDMDLYRKLRESAAGRTKYVLHDGPPYANGNIHIGHALNKILKDVITRSFQMRGYDSNYVPGWDCHGLPIEWKIEEQYRAKGKNKDEVPVNEFRKECREFAAGWITVQGAEFQRLGVIGDFKNPYTTMAFHAESRIAGELLKFAMSGQLYRGSKPVMWSVVERTALAEAEIEYHDYESDTIWVKFPVASLVRPIDDGQTKLTEGALDLLQAHVVIWTTTPWTIPGNRAVNYSPRINYGLYEVTAAENAFGPQPGEKLIFADALAEDSSAKAKVTLNRLRSVSAQELGSLTLSHPLKGLGGGYEFAVPMLAGDHVTDDAGTGFVHTAPGHGREDFDAWMDAAVDLRARGIDPAIPFTVDDGGFFTKDAPGFGPDREGGPARVIDDNGKKGNANQAVIDELIRRNALFARGRLKHSYPHSWRSKKPIIFRNTPQWFVYMDKDLGDGSTLRSRALKAIDETRFVPAAGQNRIRAMIEERPDWVLSRQRAWGVPIAVFADVDGNVLKDEAVNQRIMDAFEKEGADAWFAAGAKERFLGNHDASKWKQVMDILDVWFDSGSTHVFTLEDRPDLKWPADVYLEGSDQHRGWFHSSLLESCGTRGRAPYDTVVTHGFTMDEDGRKMSKSLGNTVVPQDVIKQSGADILRLWVVTTDYWEDQRLGKNVLQTNIDAYRKLRNTIRWMLGTLAHDDGEEVPLEKMPELERLMLHRLAELDEVVRSGYDAFEFKRITRMLLDFMVVELSAFYFDIRKDALYCDAPSSLKRKASVQVVRHLFNCLVKWLAPMLPFTMEEAWLDRHPDSVSVHLDQFPQIPADWQNEALAEKWRQVRQVRRVVTGALEIARAQKVIGSSLEAVPVVTISDAALEAAISDVDMAEMAITSDLVIAHGEAPAGAFAIDDVRGVAVVVEKAEDRGLLKCARSWRYTADIGQDPEFPDVSARDAAVLHELKALGRL
>NZ_CP015064.1|WP_063171846.1|2289354_2290161_+|MipA/OmpV-family-protein
MSPVGRISLVLAAAVLGGVGAANAGEGSWLSGDWYLTVGATGLVAPNFEGGRKYMLSAQPIISLGKAGPAARFVSRNDNISLALVDDGGVRAGLTGKFLFSRDDDNADELKGLDPVRWGGEVGGFFEFYPTDWLRARAELRHGIRAHNGFVADIAADAFYDVTPTVRISGGPRVSFASGNYFDAYYGVNAQEAVASGLSEYHPGGGLKSTGLGGAITWKVTEPMTASLFGEYSRLMGPAADSSLVKERGDRNQFTVGVSTTYRFDFTM
>NZ_CP015064.1|WP_013532362.1|2288605_2289160_-|HdeD-family-acid-resistance-protein
MTLHGDALKIAIEQTRTKWGWFVALGVLLLIFGGIAFANLFVATVASVYVVGWLMLMAGIIEIVHAFGVKTWSRFFYWLLSGLLYAVAGFFAFGNPLLASAVLTFLLAIALVASGVLRAWVGYSHRPERGWGWIVAAGVITALAGLIIAMGWPVNSLWVLGLFLAIDLIFQGWTFIAVGLALKK
>NZ_CP015064.1|WP_063171845.1|2287623_2288604_+|bifunctional-riboflavin-kinase/FAD-synthetase
MAAFQRILATAPLPADLRGGVVAIGNFDGVHRGHQAVLERASAEAGRRGVPALVLTFEPHPRKIFRPDIPLFVLTPPPMKARLLSLLGFAALVEQPFTRDFASLSAEAFVTDVLETNLGITHAVTGFDFHFGKDRQGGPAYLMAAGERHGFGVTLVDAFRDEGAEVVSSSRIRGLLGEGEVAEAAGLLGYRFTVESEVVGGQQLGRTLGFPTANMRLSPEATLKEGIYAVRFRRADGTLHDGVASFGRRPTVDDNGAPLLETFVFDFSGDLYGEVCQVSFFGFLRPEVKFEGLDALVAQMKRDEAEARALLAGVRPLSDLDAAMAF
>NZ_CP015064.1|WP_063170199.1|2286756_2287617_+|TIGR01459-family-HAD-type-hydrolase
MADSPEIIGSLEDVSKAYSAILCDVWGVVHNGETHFPVAASALARAREAKIPVVLITNSPRRSADVVAQMNAIGVPPSAYDRVVTSGDVTRDLIAEGPRKIFHIGADRDFTLYEGLDVELVEEFEASGVVCTGLFDDEVEKPEDYAELLRRLRARNLPFICANPDIVVERGERIIWCAGALARDYAQLGGRTLIAGKPYAPIYNLAMKEVAEILGQPVERGQVLAIGDGMMTDVKGAADNGFDVLYVSGGIHARDYGDALQPDPARLAAFLEKHGYGPVAVIPRLR
>NZ_CP015064.1|WP_174564967.1|2284540_2286526_-|pilus-assembly-protein
MHGLWRQFCRDQRGNYALMTVVAMVPLMGALAMAVDFTEMSREKQAVSNALDAANFATARRLTEGATDDQLRAYALDFFNANLNKINPANTTLTVTLPSNTTGGGLLKMTARLDYKPYFYPVFGQLVGKSETDANQRISFNITSEVRLKNTLEVALVLDNSGSMTKTGTGSGQTRIDLLKTAAKQLVDTLAQQAAMIKQVDRPVQFGLVPFAASVNVGPGNGNAPWVDTEGLSPVSNENFDWSTLNAADKYAQQTNGIWYKRGTGWGTDEGQMLTRFSLYRDMKVVTNHERVVNSKRVVCDEYNPNNTCKRDHDEYDYIDTYGPFASWQGCVEARPYPYNVNDAAPSGGSANTGIGVGDPATMFVPMFAPDEPGNHWRLTQDPDEAAPTTYGAINSWWNDDPTSSTGQSRLRNMSKYFQPRPINAPALAAGNGPNYSCSTNPITPLTDVSVTTGLTAIKAAIDLMKPDGGTNVPEGMAWGWRVVSSGEPFTQGRPETERGNDKVVIVLTDGANTYYTPSSLSHSDPADSKSTYASFGYLNPGYNGTSVGRLFMGTSSAIGQFDYSNGNYTNALNEQMATLCNNAKAANIMVMTVALDLSTTKTADQQAIEALKSCSSNSRFRKDPTDASKPAKLFWNATGASLSNDFKEIGNELSNLRIVG
>NZ_CP015064.1|WP_063171843.1|2283776_2284409_-|LysE-family-translocator
MPETANHLAFALVCLGMVLTPGPNMIYLISRSLSQGPKAGLISLGGVALGFVFYVLAAAFGITALLLAVPFAYDALRFAGVLYLLWLAWQAVKPGGRSPFEVRELPRDRPRKLFAMGLMTNLLNPKVAVLYLSLLPQFISPGKGHVLSQLLVLGATQISISLSVNAVIAVTAGSIATFLAGRPLWLVIQRWMMGTVLAALALKMATDAQR
>NZ_CP015064.1|WP_063171842.1|2282899_2283751_+|dienelactone-hydrolase-family-protein
MAFTLPRLPNKVVCLTCLCIGSYLHAAPARADQPVQFESAASEPTPFQKRIAQAGGNVPRAVPGTPLQGYLTRPPGEGPFPAVVVLHGCSGLPRSVRKTWSERLSSWGYVVLVVDSFSTRGIKETCDGLHPVDRVYDAYGALEYLSKYSFVDPRRIALMGFSAGGNATLEALQSGGDERLMERKFKAAIAYYPDCSATNGDMAVPTLILIGELDDRTPAKNCQEMMTQRSGKGSSVQLDVYPGARHGFDSAGLKTGIEAYGQYNTAEQSILASHAFLKEVFGG
>NZ_CP015064.1|WP_013532356.1|2296939_2297494_+|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MRIVGGEFRGRPLATPRSSAIRPTTDRTREAVFNVLAHRFAEQLDGARVLDLFAGTGALGLEALSRGASYGVFIEESAEGRGLIRDNVEAFGLTGRTKIFRRDATGLGEAGTLAPFGLVFADPPYGKGLGERALQSAKAGGWLRPGALCVVEEAAVASFEPGPGFSVLDERNYGETVIRFIEAS
>NZ_CP015064.1|WP_063171852.1|2297616_2299005_+|insulinase-family-protein
MTSRIEWLRGTLLATSLAFVTTSPVLAESPVLPNTVPAEFKVTDFLLDNGMEVVVIPDHRAPIVTHMVWYKIGSADEPPGKSGIAHFFEHLMFKATTNHAAGEFDRAVSDIGGSNNAFTSYDYTAFHETVAPSALGLMMSFEADRMRNLILTDDVIKTERDVILEERRSRIDNSPEAVLDEEVDATLWQNQPYRIPVIGWMQEMQQLNRVDATAFYDKYYRPNNAVLIVAGDVEPDTVRALAEKTYGKVARGPDLPPRIRPVEPEQNTKRTVTLSDARVSVPSFSTQWVVPSYHSGKPGEAEALDLLAEILGGGNRSRLYQALVVQQGIASSAGAFFQGTMLDDTNFTVYGAPRGDARISDVETAVDAEVVRIVRDGVTPSELEKAKDRYVRSMIFARDKQDSMANIYGSTLATGGNVQDVQQWTDRIRKVTADEVKAVAARYLVLARSTTGYLLPQQQAGN
>NZ_CP015064.1|WP_063171853.1|2299151_2300522_+|insulinase-family-protein
MRGSAGFRDRSLPTIAAWRALTTLFLSILFLILPALTARAMEIQSVTSPKGITAWLVEDYSVPVVAIRFVFGGGSTQDPVGKEGLANLMTGLFDEGAGPLDSEDFQIKLDDAGAEMSFDESRDGIYGSMRMLAEQRDQAFDLLRLAVNEPRFDQLPIDRIRSQILSGIIAGENDPDTVAQNKWARALYGDHPYSRSDQGTKESIAAITSDDLKALHKAVFARGGLHVAVVGAIDAETLKKKLDMVFGDLPQNQALRPVADIDPKLAQHIEVDYDLPQTSLQLAFPGVKRKAADFFPAVLMNEILGGGTFTSRLFQEVREKRGLAYSVNSSLINQDHANALIVSTGTRSDRAAETLGIVRDVVKQLAEQGPTEAELAATKKYMIGAYAINNLDSSSAIASTLVELQLDDLGIDYMQRRAGYINAVTLEQVKAAAKKLLTTEPTIMIIGPKLAGAGKG
>NZ_CP015064.1|WP_063171854.1|2300518_2301388_+|patatin-like-phospholipase-family-protein
MSPTFGIAFGGGGARGLAHIHVIEALDELGIRPVAIAGSSIGAIMGAGMASGMTGRDIHDYARSILGRRAEVASRMWRARPGTIAEAMQNGIRVSQFNVERILKAFLPEAIPETFAELKIPLKVTATDYFGHKLAVFEDGDLHSALAASAAIPAVFRPVMRDGRLLIDGGIYNPVPFDLIENDADIIIGVDVVGAPEEADRKQPTSVDLMFGATQLMMQSIIANKLKQCRPDILVRPAVSRYRVLDFLKIDALMNETVDIKDELKRQVEKAVEARNSAAIKGRRGKQVG
>NZ_CP015064.1|WP_063171855.1|2301429_2301972_-|dihydrofolate-reductase-family-protein
MRKLIVTEFISVDGIAEVEKLPSVTWNDEMNRFKEDELADSGAMLLGRTTYEIFAGSWPTETGDFAERFNALPKYVASNSLKALDWKPAELLKGPLPEAVRTLKQGSGGNIYVHGSLSVAQELLRHGLVDRVRLLSYPGTVGQGKPLFPGGEPASLELISATPFSNGVVALEYAPVAAKS
>NZ_CP015064.1|WP_013532351.1|2302151_2302721_-|elongation-factor-P
MVKVIASSLRKGNVVDKDGKLYVILFAENIHPGKGTPVTQLDMRRIGDGVKVSERYRTTEQVERAYVEEREHTFLYRDGEGFHFMNPETYDQVAVSEAVVGDMAPYLLEGMAVQVSQFNGIAISLVLPQRATFEVVETEPTTKGQTASSSYKPAVLSNGVRTLVPPHIAPGTRVVVMTADGAYVERAKD
>NZ_CP015064.1|WP_063171856.1|2302838_2303879_+|EF-P-lysine-aminoacylase-GenX
MTEASPWWTPDVHADRRPRLMLRNGIAAGLRDWFAAHDFVEVQTAALQVSPGNEAHLAAFATEAVGPDGARAPLYLHTSPEFACKKLIAAGETRIFSFGPVYRNRERGPLHHPEFTMLEWYRVGEAYESLMLDCAAFLALAATRTGATLFSFRGRDCDPFAEPERLTVADAFTRYSGIDLLATVAADGGTDRNALHAALTHVGLRTAPDDSWADLFSRVMVEKIEPFLGQGRATILCEYPVAEAALARPSQRDPRVAERFELYCCGVELANGFGELTDADEQRRRFVIEMDEKQRIYGERYPLDEDFLSALAIMPPASGIALGFDRLAMLATGAQKIEDVIWTPVA
>NZ_CP015064.1|WP_082827371.1|2303992_2305243_+|FAD-binding-oxidoreductase
MAASETVEIAIVGAGVVGLATALRLVADGREVLLIDPNEPGSGASFGNAGTIAEYACMPVGTPAVLRALPKLLLDPDSPFSLRWPALLQLAPWLVRFMRQSLPAATRANARALAGLLADALPAWEDMVGEAGLEDQLRRNGCLYLYRHLSDFAAGAGGRAMRAGFGIHQEVLTPEKVAALEPGLPATAAHGVYFPDSINVTDPAMVMRRLLGAVSARGASVKQAEITGLQVEADGVQLSGPGVRIKAGTAVIAAGARSRALAAQAGDRIPLETERGYHLEFQTDAPLLNRPVCPVDLGFYLTPMAGRLRVAGTVELGGLVAPPNPRRLALLDRGARQIFPRLGSPASQWLGFRPSLPDSRPVIGASRGSSRVIHAFGHGHLGLTLAPITARLVADLIGGRGDPARLAPFAAGRFGH
>NZ_CP015064.1|WP_013532348.1|2305266_2305683_-|dioxygenase
MTPFHLAFPVRDLDETRVFYGEVLGCAIGRSSATWVDFDLYGHQMSAHLRPQAAQAPSDGKVDGIVVPIPHFGAVLLMDDWQRLATRLEARDDIDWLERPMVRFKGEPGEQATLFIRDPSGNALEFKGFRSLEQVFAH
>NZ_CP015064.1|WP_063171858.1|2305849_2307193_+|TldD/PmbA-family-protein
MTDISDAAKLTDRVAALVEAAKKAGADAADAVAVRGRSTGVSVRLGKVEATEASESEDVALRVFVGGRVASVSATAASDPKTLAERAVAMAKVSPQDPYQGLADPALLAKQTRDLDLFDATEVSADQLKEAALAAEAAALAVKGVTNSAGASAGAGLGGLVLATSHGFLGHYVGSRFSRSASVIAGEGTGMERDYEFSSRQHFADLDAPEDIGRKAGERAVRRIGARKAATGPVNVVFDPRVARGIAGHLAGAINGASVARKTSFLRDMMGKQVAASAITVTDEPLRRRGQASRPFDGEGVEGEKLLMVEKGVLNHWFLSTSAARELGLVTNGRGARSGSSVTPSSTNLAIEPGERSPEELIKSLKTGFYVTEVFGQGVDMVTGEYSRGASGFWIENGELAYPVAEVTIASNLKTMFLNMVPADDLDRNFGTAAPTLLIEGMTLAGA

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Crispr_ID: NZ_CP015064_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015064_4

5229654-5229736

Orphan

Consensus_repeat	Method
GCCATCGCCGCCACCGCCGCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015064_4

>merge|NZ_CP015064|4|5229654-5229736|CRISPRCasFinder
GCCCGACGCGCCATCGCCGCCAAGCGAGAAGGACGGCCCGCCAACCGAGACGGCAAATCCGCCTGAGCCGCCACCGCCGCCGA

>NZ_CP015064|4|4|5229654-5229736|CRISPRCasFinder
GCCCGACGCGCCATCGCCGCCAA	GCGAGAAGGACGGCCCGCCAACCGAGACGGCAAATCC
GCCTGAGCCGCCACCGCCGCCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015064.1\|WP_027161348.1\|5223600_5224179_-\|invasion-associated-locus-B-family-protein	unknown	unknown	gnl\|CDD\|227647
NZ_CP015064.1\|WP_024502799.1\|5219101_5219878_+\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	unknown	unknown	gnl\|CDD\|234689
NZ_CP015064.1\|WP_024502800.1\|5219948_5221523_+\|2-polyprenylphenol-6-hydroxylase	unknown	unknown	gnl\|CDD\|273909
NZ_CP015064.1\|WP_024502808.1\|5235883_5237407_-\|tripartite-tricarboxylate-transporter-permease	unknown	unknown	gnl\|CDD\|225870
NZ_CP015064.1\|WP_013529626.1\|5217216_5217846_-\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
NZ_CP015064.1\|WP_024502807.1\|5234683_5235868_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
NZ_CP015064.1\|WP_024502797.1\|5216429_5216993_-\|TIGR02281-family-clan-AA-aspartic-protease	unknown	unknown	gnl\|CDD\|226106
NZ_CP015064.1\|WP_063173086.1\|5240151_5240685_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP015064.1\|WP_063173083.1\|5215024_5216344_+\|thymidine-phosphorylase	unknown	unknown	gnl\|CDD\|131691
NZ_CP015064.1\|WP_063168998.1\|5237411_5237948_-\|tripartite-tricarboxylate-transporter-TctB-family-protein	unknown	unknown	gnl\|CDD\|377815
NZ_CP015064.1\|WP_027161350.1\|5221603_5221861_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|172484
NZ_CP015064.1\|WP_063168996.1\|5233835_5234687_-\|citryl-CoA-lyase	unknown	unknown	gnl\|CDD\|235748
NZ_CP015064.1\|WP_013529617.1\|5232925_5233234_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015064.1\|WP_063173085.1\|5238087_5239062_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|225722
NZ_CP015064.1\|WP_013529616.1\|5233360_5233831_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|240024
NZ_CP015064.1\|WP_027161349.1\|5221863_5222286_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350298
NZ_CP015064.1\|WP_013529610.1\|5239245_5240010_+\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP015064.1\|WP_024502802.1\|5222282_5223515_+\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	unknown	unknown	gnl\|CDD\|172484
NZ_CP015064.1\|WP_024502811.1\|5240887_5241343_+\|DUF2214-family-protein	unknown	unknown	gnl\|CDD\|226086
NZ_CP015064.1\|WP_027161351.1\|5217992_5218967_-\|adenosine-deaminase	unknown	unknown	gnl\|CDD\|273619

Protein	Function_ID	Function_description	E-value
NZ_CP015064.1\|WP_027161348.1\|5223600_5224179_-\|invasion-associated-locus-B-family-protein	gnl\|CDD\|227647	COG5342, COG5342, Invasion protein B, involved in pathogenesis [General function prediction only].	1.01633e-44
NZ_CP015064.1\|WP_024502799.1\|5219101_5219878_+\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	4.05549e-133
NZ_CP015064.1\|WP_024502800.1\|5219948_5221523_+\|2-polyprenylphenol-6-hydroxylase	gnl\|CDD\|273909	TIGR01982, Probable_protein_kinase_UbiB, 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol -> 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	0
NZ_CP015064.1\|WP_024502808.1\|5235883_5237407_-\|tripartite-tricarboxylate-transporter-permease	gnl\|CDD\|225870	COG3333, COG3333, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP015064.1\|WP_013529626.1\|5217216_5217846_-\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	1.11129e-132
NZ_CP015064.1\|WP_024502807.1\|5234683_5235868_-\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	8.28302e-145
NZ_CP015064.1\|WP_024502797.1\|5216429_5216993_-\|TIGR02281-family-clan-AA-aspartic-protease	gnl\|CDD\|226106	COG3577, COG3577, Predicted aspartyl protease [General function prediction only].	4.99522e-56
NZ_CP015064.1\|WP_063173086.1\|5240151_5240685_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	2.324e-32
NZ_CP015064.1\|WP_063173083.1\|5215024_5216344_+\|thymidine-phosphorylase	gnl\|CDD\|131691	TIGR02643, Thymidine_phosphorylase, thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_CP015064.1\|WP_063168998.1\|5237411_5237948_-\|tripartite-tricarboxylate-transporter-TctB-family-protein	gnl\|CDD\|377815	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family. This family consists of several hypothetical bacterial proteins of around 150 residues in length. This family was formerly known as DUF1468.	1.65179e-08
NZ_CP015064.1\|WP_027161350.1\|5221603_5221861_+\|hypothetical-protein	gnl\|CDD\|172484	PRK13982, PRK13982, bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional.	8.37248e-10
NZ_CP015064.1\|WP_063168996.1\|5233835_5234687_-\|citryl-CoA-lyase	gnl\|CDD\|235748	PRK06224, PRK06224, citryl-CoA lyase.	6.01687e-108
NZ_CP015064.1\|WP_063173085.1\|5238087_5239062_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|225722	COG3181, COG3181, Uncharacterized protein conserved in bacteria [Function unknown].	2.41936e-77
NZ_CP015064.1\|WP_013529616.1\|5233360_5233831_+\|NUDIX-hydrolase	gnl\|CDD\|240024	cd04666, Nudix_Hydrolase_9, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.78596e-48
NZ_CP015064.1\|WP_027161349.1\|5221863_5222286_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350298	cd18731, PIN_NgFitB-like, VapC-like PIN domain of Neisseria gonorrhoeae FitB and related proteins. This subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Neisseria gonorrhoeae FitB toxin of the FitAB toxin/antitoxin (TA) system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. In N. gonorrhoeae, FitA and FitB form a heterodimer: FitA is the DNA binding subunit and FitB contains a ribonuclease activity that is blocked by the presence of FitA. A tetramer of FitAB heterodimers binds DNA from the fitAB upstream promoter region with high affinity. This results in both sequestration of FitAB and repression of fitAB transcription. It is thought that FitAB release from the DNA and subsequent dissociation both slows N. gonorrhoeae replication and transcytosis by an as yet undefined mechanism. The toxin M. tuberculosis VapC is a structural homolog of N. gonorrhoeae FitB, but their antitoxin partners, VapB and FitA, respectively, differ structurally. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.8154e-57
NZ_CP015064.1\|WP_013529610.1\|5239245_5240010_+\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	1.60199e-45
NZ_CP015064.1\|WP_024502802.1\|5222282_5223515_+\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	gnl\|CDD\|172484	PRK13982, PRK13982, bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional.	0
NZ_CP015064.1\|WP_024502811.1\|5240887_5241343_+\|DUF2214-family-protein	gnl\|CDD\|226086	COG3556, COG3556, Predicted membrane protein [Function unknown].	1.4404e-61
NZ_CP015064.1\|WP_027161351.1\|5217992_5218967_-\|adenosine-deaminase	gnl\|CDD\|273619	TIGR01430, Putative_adenosine/adenine_deaminase, adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.	4.7163e-151

>NZ_CP015064.1|WP_027161348.1|5223600_5224179_-|invasion-associated-locus-B-family-protein
MRKFAYFLAMLGVACTVGVPAVAAQTKSDKAVAAPAAADAPQLPGGASALSETHGDWTVNCQISGATKTCSLSHQQFNKQNNQRLLAIELSSKTGEDATGTLALPFGLALAKGVSLTIDDQKLDGSLAFNTCQVVGCLVPVMFDATVTPLLKSGTTLKIDAFAADTGQAVSFSIPLNGFAGALARTAELLTN
>NZ_CP015064.1|WP_024502802.1|5222282_5223515_+|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC
MSLSGKRILLIIGGGIAAYKALDLIRRLRERGAAVRVVMTSAAQEFVTTLSVGALSADHVFTELFDRNDEHDVGHIRLSREADLLVVAPATADLMAKLANGHANDLASTVLVATDKPVLMAPAMNPRMWAHPATRRNRATLQKDGVTFVGPARGEMAESNETGEGRMAEPLEIVAAVEALLDVGPRPLSGRKIIVTSGPTHEPIDPVRYIANRSSGKQGHAIAAALARLGADVRLVSGPVGIADPPGVKTIHVERAQEMRDAVERLLPADAAVFVAAVADWRTENSAGEKIKKVAGEGPPVLRMVENPDILAGVGHHSQRPGLVIGFAAETQDLLRNAEAKLKKKGADLIVANDVSQGSGVGSSGVMGGDRNRVRIVSKAGVEEWPEMSKDEVAARLAALIAERLKTIVV
>NZ_CP015064.1|WP_027161349.1|5221863_5222286_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MFVLDTNVISETFKPRPDAGVATWMDSSLATRSYVTAMTKAELLVGLANMPDGTRKAALGSVIGAFFTKWLKTPVLAFGDREAEAYAEIASNRRFLARPIREFDAQIASVARSRGFAVVTRNVADFSDCGISIVNPWEGA
>NZ_CP015064.1|WP_027161350.1|5221603_5221861_+|hypothetical-protein
MSTLTIRNLDTYVKQKLRERAAVRGVSMEEEARSVLAKSVLSDGVDQDPRGESLYAAIRRLVEPHGGFDVELPERGPPREPLKFD
>NZ_CP015064.1|WP_024502800.1|5219948_5221523_+|2-polyprenylphenol-6-hydroxylase
MSNVSAGFRLVRAGWVLVREGVVAALPGEELSGLPKFGWRMARLFTRRRALAYERSDRLAKAVVRLGPSYVKLGQFLATRPDVVGNDMALDLAMLQDKMHTFPKAEAIAAIEASLGRKVGDLYAQFGDPVAAASIAQVHAADAMHDGVATKVAVKVIRPGVRRRFFQDLESYFLAARLQEKYIPSSRRLRPVEVTQTLAQTTKIEMDLRLEAAALSELGESTRHDPGFRVPSVDWERTGRDVLTMEWVDGVKMNDIAGLVAAGHDLKTIATNLIQSFLRHTLRDGFFHADMHPGNLFVEANGTIVAVDLGIAGRLGKKERRFLAEILYGFITRDYLRVAEVHFEAGYVPRQHNVAAFAQAIRAIGEPIHGQPAETISMAKLLTLLFEVTELFDMATRPELILLQKTMVVVEGVARTLDPAFNMWKTAEPVVGDWISGNLGPRGMMMDARDGAKALLTLARQVPELAARTDRLSREIDLMAEHGLRFDETTAHAIGKAEARYSRSGRWALWVIALTLVYIAWKMI
>NZ_CP015064.1|WP_024502799.1|5219101_5219878_+|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE
MSVERTTAAGGMETSYGFKRVGAGDKQSLVNDVFHKVANRYDLMNDLMSAGLHRLWKDAMVTWLNPPKRAGWKVLDVAGGTGDIAFRIVDASHGNAHATVLDINGSMLAVGRDRAEKKGLSGNTDFVEANAEELPFPDATFDAYTIAFGIRNVPRIEVALGEAFRVLKPGGRFLCLEFSEVEMPLLDKAYEAWSFNAIPKIGKMVTGDGEPYSYLVESIARFPNQQNFTTMISRAGFDRVSFRNYSGGIAALHSGWKL
>NZ_CP015064.1|WP_027161351.1|5217992_5218967_-|adenosine-deaminase
MPLKAELHCHIEGAAAPELVIRQAQKYGKDTSPYIQNGSFVWHDFTSFLAAYDFSADLFRTEEDYARLADHYLTSLARDGAIYSEVFTSPDHAKKAGLSPKAYTDALGEGMARAKAKTGIEGRMIVTGVRHVGVESIEQAARFAARCGHPLVTGFGVAGDERVGDMEDYVRAFEIAREAGLGITIHAGELTGWETVQAALDHIRPSRIGHGVRAIENPDLVRRIADEGVVLECCPGSNIALKVFDSFADHPFPALQAAGCKVTLNSDDPPYFWTSLKREYDIATEHFSMNDKALTAVTRTAIEAAFVDRKTKTALLARLNSAAR
>NZ_CP015064.1|WP_013529626.1|5217216_5217846_-|uracil-phosphoribosyltransferase
MQGVTVVDHPLVQHKLTIMRKKETSTAGFRRLLREISLLLGYEVTRNLELTTTTIETPMETMEAPTLEGKKLVFASVLRAGNGLLEGLLDLVPAARVAHVGLYRDHETLEAVEYFFKAPSDLADRLVIVVDPMLATANSAIAAIDKLKERGATNIRFLCLLAAPEGIERFIKAHPDVPVFTASIDRQLNEKGYIMPGLGDAGDRMYGTK
>NZ_CP015064.1|WP_024502797.1|5216429_5216993_-|TIGR02281-family-clan-AA-aspartic-protease
MLRKLLILAVFAGTSASIPIVYQSNPQLVENLLRSAVPGKQAVEAQPNVNLASVPNKPAAPLPMGRKVLVAADERGHFSSPFKLNGRQVDGMIDTGATLVAINISTARRIGLSLNASDFNREVNTANGTIKAAVAMIDRLQIGSITVNDVQTIVLDDRALRTNLIGMSFLNRLDKYQVENGTLLLVQ
>NZ_CP015064.1|WP_063173083.1|5215024_5216344_+|thymidine-phosphorylase
MLPQEIIRRKRDGLRLSEEEIAGFVAGVTSGAVTDGQAGAFAMAVFFNGMNRDEAVALTLAMRDSGDVLDWSDLPGPVTDKHSTGGVGDNVSLMLAPIVAACGAYVPMISGRGLGHTGGTLDKMDAIPGYISQPDVALFRKAVLETGCAIIGQTADLAPADRRLYAIRDVSGTVESVPLITASILSKKLAAGLQSLVLDVKVGNGAFMEKSRDATALANSLVEIANGAGLKASALITGMNEPLASAAGNAVEVRNAVDFLTGRYRDRRLEDVTLALAAEMLQSAGLVSSNQDGMRRATETLASGRAAATFARMVAALGGPADFIEKPEKYLPAAATELAVKATANGFVTGIATRDIGLAVVGLGAGRTRPDDQIDPAVGITRLLPVGAEVGIGEPLALIHARSSADAETAAATVLSAYMVGASKPPADKSVIRRILPRG
>NZ_CP015064.1|WP_013529617.1|5232925_5233234_+|hypothetical-protein
MSALRPSTIFTVAMLATAVLAGVCLPASAQALNPATGNNALIRQNDLQILQNRIQRQQYQQQQQQNRAQDRQIFQQPPPVVQQLKPSCQTQIIGTTAVSNCR
>NZ_CP015064.1|WP_013529616.1|5233360_5233831_+|NUDIX-hydrolase
MAATKKKAVRKAKKGERIRQVAAIPFRLTARGDIEVMLVTSRTTRRFIVPKGWPMKGKSGRKAATIEAQEEAGVLGKTLKQPAGTYSYWKRLANRFVRVDVIVYLLEVSEELADWQEAKRRQRAWLAPADAAMLIDEPDLSTLVKTLKIPVQVDQA
>NZ_CP015064.1|WP_063168996.1|5233835_5234687_-|citryl-CoA-lyase
MSGTEKKTGRERGEEWWQTDIIEMRPGVIRLRGYEIQDLIGRVSFPAVIWLMLRGELPSEDQAELLGIALAAAVDHGPQAPSIAIARMAATCGVGINSAMASAINVLGDVHGGAGEQALSFYGDIAVAIDAGMTLNEAVSARLDRFFAEEKGYVPGLGHRFHPVDPRAPRLLELTREFAARGAVNGRFADIAEAVEADVERRKGKKIPLNIDGATAVIYGELGFPPPLTRGLFVLSRSVGILAHAWEQSQQAERNKGPLPREWLWAYTGTPVRPFPESDDPGE
>NZ_CP015064.1|WP_024502807.1|5234683_5235868_-|CoA-transferase
MTELLSGIRVLDLTNVLAGPYCAYQLALLGADVIKVEAPQGGDLARQLGGSPKLNSAGMGASFLAQNAGKRSVVLDLKKQADRERFFDLVASADALVENFRPGVMDRLGLGYEALKTVRPGLVYCAISGFGQTGPMRDNPAYDQIIQGLSGIMSITGTPETAPLRVGYPVADTLGGLVGAFAIASALVRQKTSGEGAFLDVSMLECTLSALGWPVSNYLTAGIDPMPMGNENMTAAPSGAFRTGDGLINIAANKQEQFVALCRLIGRPELASDVRYAERETRKRNRAALKVEIEDALAGASAAAWEETLNRAGVPAGRVLTIPQVLAEPQVLERQVTAHFDDVAGMDKPLTVLRGGFMVDGEAPLPTKPPPALGEHMSEVFADLPPRTRTKARA
>NZ_CP015064.1|WP_024502808.1|5235883_5237407_-|tripartite-tricarboxylate-transporter-permease
METLGHLSHGFSVAFTPVNLLWCLLGTTLGTAIGVLPGLGPALTIALLLPITYQVAPEASFILFAGIYYGAMYGGSTTSILLNTPGESATIVTALEGNRMARSGRGGAALATSAIGSFVAGTIGTMGVAFLAPVVVKFALAFGPAEYFSLMVLAFITVSAVLGSSSVRGLTSLFAGFVIGMIGVDLQTGQPRFTFGMTELLDGVDVIIAAVGLFAVGETLYMASRRYAGKDEIVPLKGSLYMTAAEWGRSWKPWLRGAAIGFPIGAMPAGGAEIPTFLSYAIEKKLSKHKQEFGTVGAIEGVAGPEAANNASAAGVLVPMLTLGLPTSATAAIMLSAFQSYGINPGPLLLTTQGDLVWGLIASLFIANVILVILNLPLIGLWVRLLKIPAPQLYAGILVFATVGTYGISQSPIDLVILYLLGAAGFLMRRFDFPTAPVIIGMILGPLAETQFRRAMTISNGDWSVFYTHKLSLTLLTLAFIGLAGPHIWAFIEHRRRRGPEHVPGDA
>NZ_CP015064.1|WP_063168998.1|5237411_5237948_-|tripartite-tricarboxylate-transporter-TctB-family-protein
MSTSDQQAAPSRLAVPELLIGIGLLACAGAVAWQTLAIPVSPLYSKVGPTVFPYLTMVGLVVLSLLLILAALRGGWQPEEEKETPTDWKAMGFVVIGLIANLLLIQPLGFTAASVIMFVLVCYGFGSKRTLRDVVLGLILALAAYFGFARALGVNIGAGFIENQLNTVIDAFITMLRG
>NZ_CP015064.1|WP_063173085.1|5238087_5239062_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MLDRRRFLMSTAAVGAGLMTSHLSPALAEGAPQIQLFVPAAPGGGWDQTARTIDQVLRSEKLISGSQITNVGGAGGTVGLPQFISQWNGKGNSLMVAGMVMVGAIIANKAANNLTQVTPIARLTGEFEALVVPAESPFKTAADFVAALKADPTKVPVAGGSAGGSDHILFGLIAKTVGVPATNLSYVPFAGGGEALSALLGNQVAAGISGFGEFSEQVKAGALRLLAISADKRQDGIDAPTLKEAGIDVELFNWRGVFAPPGISDADKAAMITLIGTMAKSDAWATECKNRNWTPILLTGDDYAKFVTEDSARIEAILKDLGLA
>NZ_CP015064.1|WP_013529610.1|5239245_5240010_+|IclR-family-transcriptional-regulator
MDSPSKSADAEIDRAEGVAALDRAIAILDAFSTEDRSLSLAEIAARTGLYKSTILRLANSLLRGRLLERLDNGRYRVGPATFRLGALYQRSVVAVDILLPIMRDLSERSWESVAFYVRSGDVRTCLYRVESKHPIRYTIREGDVLPLLLGSGGRVLAAFSGQQGEPYETIRKTCNCLAVGDRDPETGGVSAPVFGPGGVLLGALTLAGPSTRVDAAFLQRMKRPLLEAAARATRAFGEDASMLEQASLAADALP
>NZ_CP015064.1|WP_063173086.1|5240151_5240685_-|GNAT-family-N-acetyltransferase
MNNPQATSAPVIETKRTILRAHRLDDFDTYAAMWTDPLVTRFIGGKPRTREESWMRFLRHAGLWSLLGYGFWAIEEKATGRFIGEAGFHDLKRDMEPSIEGIPEAGWALVPAVHGAGFATEVVGRVLAWGEVIFGREKTVCIIDPENGASLRVAAKCGYREVVKTTYHDAPTILLAR
>NZ_CP015064.1|WP_024502811.1|5240887_5241343_+|DUF2214-family-protein
MDTTDLVLAIFHHLLVFSLAGIIGAEFVLIRGDLGAATLKRLAGIDRHYGVIAALIIVVGIGRVFYGLKGWEFYVYNWVFWAKIAAFGAVGLLSIIPTVRFISWNRQASGNASFQVPATELASVKTYIRAEAFIFLLIPVFAAAMARGYGY

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Crispr_ID: NZ_CP015064_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015064_5

5230698-5230787

Orphan

Consensus_repeat	Method
GCCGCCAGTGCCGCCGCCACCGCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015064_5

>merge|NZ_CP015064|5|5230698-5230787|CRISPRCasFinder
ACCCGCCTTGCCGCCACTGCCGCCGACGCCCACTGCTGCGACGGTCGAGCCGGAAAGTGCAAACCCGCCATTGCCGCCGCCGCCGCCCAC

>NZ_CP015064|5|5|5230698-5230787|CRISPRCasFinder
ACCCGCCTTGCCGCCACTGCCGCCGA	CGCCCACTGCTGCGACGGTCGAGCCGGAAAGTGCAAA
CCCGCCATTGCCGCCGCCGCCGCCCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015064.1\|WP_027161348.1\|5223600_5224179_-\|invasion-associated-locus-B-family-protein	unknown	unknown	gnl\|CDD\|227647
NZ_CP015064.1\|WP_024502799.1\|5219101_5219878_+\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	unknown	unknown	gnl\|CDD\|234689
NZ_CP015064.1\|WP_024502800.1\|5219948_5221523_+\|2-polyprenylphenol-6-hydroxylase	unknown	unknown	gnl\|CDD\|273909
NZ_CP015064.1\|WP_024502808.1\|5235883_5237407_-\|tripartite-tricarboxylate-transporter-permease	unknown	unknown	gnl\|CDD\|225870
NZ_CP015064.1\|WP_013529626.1\|5217216_5217846_-\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
NZ_CP015064.1\|WP_024502807.1\|5234683_5235868_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
NZ_CP015064.1\|WP_024502797.1\|5216429_5216993_-\|TIGR02281-family-clan-AA-aspartic-protease	unknown	unknown	gnl\|CDD\|226106
NZ_CP015064.1\|WP_063173086.1\|5240151_5240685_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP015064.1\|WP_063173083.1\|5215024_5216344_+\|thymidine-phosphorylase	unknown	unknown	gnl\|CDD\|131691
NZ_CP015064.1\|WP_063168998.1\|5237411_5237948_-\|tripartite-tricarboxylate-transporter-TctB-family-protein	unknown	unknown	gnl\|CDD\|377815
NZ_CP015064.1\|WP_027161350.1\|5221603_5221861_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|172484
NZ_CP015064.1\|WP_063168996.1\|5233835_5234687_-\|citryl-CoA-lyase	unknown	unknown	gnl\|CDD\|235748
NZ_CP015064.1\|WP_013529617.1\|5232925_5233234_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015064.1\|WP_063173085.1\|5238087_5239062_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|225722
NZ_CP015064.1\|WP_013529616.1\|5233360_5233831_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|240024
NZ_CP015064.1\|WP_027161349.1\|5221863_5222286_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350298
NZ_CP015064.1\|WP_013529610.1\|5239245_5240010_+\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP015064.1\|WP_024502802.1\|5222282_5223515_+\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	unknown	unknown	gnl\|CDD\|172484
NZ_CP015064.1\|WP_024502811.1\|5240887_5241343_+\|DUF2214-family-protein	unknown	unknown	gnl\|CDD\|226086
NZ_CP015064.1\|WP_027161351.1\|5217992_5218967_-\|adenosine-deaminase	unknown	unknown	gnl\|CDD\|273619

Protein	Function_ID	Function_description	E-value
NZ_CP015064.1\|WP_027161348.1\|5223600_5224179_-\|invasion-associated-locus-B-family-protein	gnl\|CDD\|227647	COG5342, COG5342, Invasion protein B, involved in pathogenesis [General function prediction only].	1.01633e-44
NZ_CP015064.1\|WP_024502799.1\|5219101_5219878_+\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	4.05549e-133
NZ_CP015064.1\|WP_024502800.1\|5219948_5221523_+\|2-polyprenylphenol-6-hydroxylase	gnl\|CDD\|273909	TIGR01982, Probable_protein_kinase_UbiB, 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol -> 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	0
NZ_CP015064.1\|WP_024502808.1\|5235883_5237407_-\|tripartite-tricarboxylate-transporter-permease	gnl\|CDD\|225870	COG3333, COG3333, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP015064.1\|WP_013529626.1\|5217216_5217846_-\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	1.11129e-132
NZ_CP015064.1\|WP_024502807.1\|5234683_5235868_-\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	8.28302e-145
NZ_CP015064.1\|WP_024502797.1\|5216429_5216993_-\|TIGR02281-family-clan-AA-aspartic-protease	gnl\|CDD\|226106	COG3577, COG3577, Predicted aspartyl protease [General function prediction only].	4.99522e-56
NZ_CP015064.1\|WP_063173086.1\|5240151_5240685_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	2.324e-32
NZ_CP015064.1\|WP_063173083.1\|5215024_5216344_+\|thymidine-phosphorylase	gnl\|CDD\|131691	TIGR02643, Thymidine_phosphorylase, thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_CP015064.1\|WP_063168998.1\|5237411_5237948_-\|tripartite-tricarboxylate-transporter-TctB-family-protein	gnl\|CDD\|377815	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family. This family consists of several hypothetical bacterial proteins of around 150 residues in length. This family was formerly known as DUF1468.	1.65179e-08
NZ_CP015064.1\|WP_027161350.1\|5221603_5221861_+\|hypothetical-protein	gnl\|CDD\|172484	PRK13982, PRK13982, bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional.	8.37248e-10
NZ_CP015064.1\|WP_063168996.1\|5233835_5234687_-\|citryl-CoA-lyase	gnl\|CDD\|235748	PRK06224, PRK06224, citryl-CoA lyase.	6.01687e-108
NZ_CP015064.1\|WP_063173085.1\|5238087_5239062_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|225722	COG3181, COG3181, Uncharacterized protein conserved in bacteria [Function unknown].	2.41936e-77
NZ_CP015064.1\|WP_013529616.1\|5233360_5233831_+\|NUDIX-hydrolase	gnl\|CDD\|240024	cd04666, Nudix_Hydrolase_9, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.78596e-48
NZ_CP015064.1\|WP_027161349.1\|5221863_5222286_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350298	cd18731, PIN_NgFitB-like, VapC-like PIN domain of Neisseria gonorrhoeae FitB and related proteins. This subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Neisseria gonorrhoeae FitB toxin of the FitAB toxin/antitoxin (TA) system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. In N. gonorrhoeae, FitA and FitB form a heterodimer: FitA is the DNA binding subunit and FitB contains a ribonuclease activity that is blocked by the presence of FitA. A tetramer of FitAB heterodimers binds DNA from the fitAB upstream promoter region with high affinity. This results in both sequestration of FitAB and repression of fitAB transcription. It is thought that FitAB release from the DNA and subsequent dissociation both slows N. gonorrhoeae replication and transcytosis by an as yet undefined mechanism. The toxin M. tuberculosis VapC is a structural homolog of N. gonorrhoeae FitB, but their antitoxin partners, VapB and FitA, respectively, differ structurally. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.8154e-57
NZ_CP015064.1\|WP_013529610.1\|5239245_5240010_+\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	1.60199e-45
NZ_CP015064.1\|WP_024502802.1\|5222282_5223515_+\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	gnl\|CDD\|172484	PRK13982, PRK13982, bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional.	0
NZ_CP015064.1\|WP_024502811.1\|5240887_5241343_+\|DUF2214-family-protein	gnl\|CDD\|226086	COG3556, COG3556, Predicted membrane protein [Function unknown].	1.4404e-61
NZ_CP015064.1\|WP_027161351.1\|5217992_5218967_-\|adenosine-deaminase	gnl\|CDD\|273619	TIGR01430, Putative_adenosine/adenine_deaminase, adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.	4.7163e-151

>NZ_CP015064.1|WP_027161348.1|5223600_5224179_-|invasion-associated-locus-B-family-protein
MRKFAYFLAMLGVACTVGVPAVAAQTKSDKAVAAPAAADAPQLPGGASALSETHGDWTVNCQISGATKTCSLSHQQFNKQNNQRLLAIELSSKTGEDATGTLALPFGLALAKGVSLTIDDQKLDGSLAFNTCQVVGCLVPVMFDATVTPLLKSGTTLKIDAFAADTGQAVSFSIPLNGFAGALARTAELLTN
>NZ_CP015064.1|WP_024502802.1|5222282_5223515_+|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC
MSLSGKRILLIIGGGIAAYKALDLIRRLRERGAAVRVVMTSAAQEFVTTLSVGALSADHVFTELFDRNDEHDVGHIRLSREADLLVVAPATADLMAKLANGHANDLASTVLVATDKPVLMAPAMNPRMWAHPATRRNRATLQKDGVTFVGPARGEMAESNETGEGRMAEPLEIVAAVEALLDVGPRPLSGRKIIVTSGPTHEPIDPVRYIANRSSGKQGHAIAAALARLGADVRLVSGPVGIADPPGVKTIHVERAQEMRDAVERLLPADAAVFVAAVADWRTENSAGEKIKKVAGEGPPVLRMVENPDILAGVGHHSQRPGLVIGFAAETQDLLRNAEAKLKKKGADLIVANDVSQGSGVGSSGVMGGDRNRVRIVSKAGVEEWPEMSKDEVAARLAALIAERLKTIVV
>NZ_CP015064.1|WP_027161349.1|5221863_5222286_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MFVLDTNVISETFKPRPDAGVATWMDSSLATRSYVTAMTKAELLVGLANMPDGTRKAALGSVIGAFFTKWLKTPVLAFGDREAEAYAEIASNRRFLARPIREFDAQIASVARSRGFAVVTRNVADFSDCGISIVNPWEGA
>NZ_CP015064.1|WP_027161350.1|5221603_5221861_+|hypothetical-protein
MSTLTIRNLDTYVKQKLRERAAVRGVSMEEEARSVLAKSVLSDGVDQDPRGESLYAAIRRLVEPHGGFDVELPERGPPREPLKFD
>NZ_CP015064.1|WP_024502800.1|5219948_5221523_+|2-polyprenylphenol-6-hydroxylase
MSNVSAGFRLVRAGWVLVREGVVAALPGEELSGLPKFGWRMARLFTRRRALAYERSDRLAKAVVRLGPSYVKLGQFLATRPDVVGNDMALDLAMLQDKMHTFPKAEAIAAIEASLGRKVGDLYAQFGDPVAAASIAQVHAADAMHDGVATKVAVKVIRPGVRRRFFQDLESYFLAARLQEKYIPSSRRLRPVEVTQTLAQTTKIEMDLRLEAAALSELGESTRHDPGFRVPSVDWERTGRDVLTMEWVDGVKMNDIAGLVAAGHDLKTIATNLIQSFLRHTLRDGFFHADMHPGNLFVEANGTIVAVDLGIAGRLGKKERRFLAEILYGFITRDYLRVAEVHFEAGYVPRQHNVAAFAQAIRAIGEPIHGQPAETISMAKLLTLLFEVTELFDMATRPELILLQKTMVVVEGVARTLDPAFNMWKTAEPVVGDWISGNLGPRGMMMDARDGAKALLTLARQVPELAARTDRLSREIDLMAEHGLRFDETTAHAIGKAEARYSRSGRWALWVIALTLVYIAWKMI
>NZ_CP015064.1|WP_024502799.1|5219101_5219878_+|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE
MSVERTTAAGGMETSYGFKRVGAGDKQSLVNDVFHKVANRYDLMNDLMSAGLHRLWKDAMVTWLNPPKRAGWKVLDVAGGTGDIAFRIVDASHGNAHATVLDINGSMLAVGRDRAEKKGLSGNTDFVEANAEELPFPDATFDAYTIAFGIRNVPRIEVALGEAFRVLKPGGRFLCLEFSEVEMPLLDKAYEAWSFNAIPKIGKMVTGDGEPYSYLVESIARFPNQQNFTTMISRAGFDRVSFRNYSGGIAALHSGWKL
>NZ_CP015064.1|WP_027161351.1|5217992_5218967_-|adenosine-deaminase
MPLKAELHCHIEGAAAPELVIRQAQKYGKDTSPYIQNGSFVWHDFTSFLAAYDFSADLFRTEEDYARLADHYLTSLARDGAIYSEVFTSPDHAKKAGLSPKAYTDALGEGMARAKAKTGIEGRMIVTGVRHVGVESIEQAARFAARCGHPLVTGFGVAGDERVGDMEDYVRAFEIAREAGLGITIHAGELTGWETVQAALDHIRPSRIGHGVRAIENPDLVRRIADEGVVLECCPGSNIALKVFDSFADHPFPALQAAGCKVTLNSDDPPYFWTSLKREYDIATEHFSMNDKALTAVTRTAIEAAFVDRKTKTALLARLNSAAR
>NZ_CP015064.1|WP_013529626.1|5217216_5217846_-|uracil-phosphoribosyltransferase
MQGVTVVDHPLVQHKLTIMRKKETSTAGFRRLLREISLLLGYEVTRNLELTTTTIETPMETMEAPTLEGKKLVFASVLRAGNGLLEGLLDLVPAARVAHVGLYRDHETLEAVEYFFKAPSDLADRLVIVVDPMLATANSAIAAIDKLKERGATNIRFLCLLAAPEGIERFIKAHPDVPVFTASIDRQLNEKGYIMPGLGDAGDRMYGTK
>NZ_CP015064.1|WP_024502797.1|5216429_5216993_-|TIGR02281-family-clan-AA-aspartic-protease
MLRKLLILAVFAGTSASIPIVYQSNPQLVENLLRSAVPGKQAVEAQPNVNLASVPNKPAAPLPMGRKVLVAADERGHFSSPFKLNGRQVDGMIDTGATLVAINISTARRIGLSLNASDFNREVNTANGTIKAAVAMIDRLQIGSITVNDVQTIVLDDRALRTNLIGMSFLNRLDKYQVENGTLLLVQ
>NZ_CP015064.1|WP_063173083.1|5215024_5216344_+|thymidine-phosphorylase
MLPQEIIRRKRDGLRLSEEEIAGFVAGVTSGAVTDGQAGAFAMAVFFNGMNRDEAVALTLAMRDSGDVLDWSDLPGPVTDKHSTGGVGDNVSLMLAPIVAACGAYVPMISGRGLGHTGGTLDKMDAIPGYISQPDVALFRKAVLETGCAIIGQTADLAPADRRLYAIRDVSGTVESVPLITASILSKKLAAGLQSLVLDVKVGNGAFMEKSRDATALANSLVEIANGAGLKASALITGMNEPLASAAGNAVEVRNAVDFLTGRYRDRRLEDVTLALAAEMLQSAGLVSSNQDGMRRATETLASGRAAATFARMVAALGGPADFIEKPEKYLPAAATELAVKATANGFVTGIATRDIGLAVVGLGAGRTRPDDQIDPAVGITRLLPVGAEVGIGEPLALIHARSSADAETAAATVLSAYMVGASKPPADKSVIRRILPRG
>NZ_CP015064.1|WP_013529617.1|5232925_5233234_+|hypothetical-protein
MSALRPSTIFTVAMLATAVLAGVCLPASAQALNPATGNNALIRQNDLQILQNRIQRQQYQQQQQQNRAQDRQIFQQPPPVVQQLKPSCQTQIIGTTAVSNCR
>NZ_CP015064.1|WP_013529616.1|5233360_5233831_+|NUDIX-hydrolase
MAATKKKAVRKAKKGERIRQVAAIPFRLTARGDIEVMLVTSRTTRRFIVPKGWPMKGKSGRKAATIEAQEEAGVLGKTLKQPAGTYSYWKRLANRFVRVDVIVYLLEVSEELADWQEAKRRQRAWLAPADAAMLIDEPDLSTLVKTLKIPVQVDQA
>NZ_CP015064.1|WP_063168996.1|5233835_5234687_-|citryl-CoA-lyase
MSGTEKKTGRERGEEWWQTDIIEMRPGVIRLRGYEIQDLIGRVSFPAVIWLMLRGELPSEDQAELLGIALAAAVDHGPQAPSIAIARMAATCGVGINSAMASAINVLGDVHGGAGEQALSFYGDIAVAIDAGMTLNEAVSARLDRFFAEEKGYVPGLGHRFHPVDPRAPRLLELTREFAARGAVNGRFADIAEAVEADVERRKGKKIPLNIDGATAVIYGELGFPPPLTRGLFVLSRSVGILAHAWEQSQQAERNKGPLPREWLWAYTGTPVRPFPESDDPGE
>NZ_CP015064.1|WP_024502807.1|5234683_5235868_-|CoA-transferase
MTELLSGIRVLDLTNVLAGPYCAYQLALLGADVIKVEAPQGGDLARQLGGSPKLNSAGMGASFLAQNAGKRSVVLDLKKQADRERFFDLVASADALVENFRPGVMDRLGLGYEALKTVRPGLVYCAISGFGQTGPMRDNPAYDQIIQGLSGIMSITGTPETAPLRVGYPVADTLGGLVGAFAIASALVRQKTSGEGAFLDVSMLECTLSALGWPVSNYLTAGIDPMPMGNENMTAAPSGAFRTGDGLINIAANKQEQFVALCRLIGRPELASDVRYAERETRKRNRAALKVEIEDALAGASAAAWEETLNRAGVPAGRVLTIPQVLAEPQVLERQVTAHFDDVAGMDKPLTVLRGGFMVDGEAPLPTKPPPALGEHMSEVFADLPPRTRTKARA
>NZ_CP015064.1|WP_024502808.1|5235883_5237407_-|tripartite-tricarboxylate-transporter-permease
METLGHLSHGFSVAFTPVNLLWCLLGTTLGTAIGVLPGLGPALTIALLLPITYQVAPEASFILFAGIYYGAMYGGSTTSILLNTPGESATIVTALEGNRMARSGRGGAALATSAIGSFVAGTIGTMGVAFLAPVVVKFALAFGPAEYFSLMVLAFITVSAVLGSSSVRGLTSLFAGFVIGMIGVDLQTGQPRFTFGMTELLDGVDVIIAAVGLFAVGETLYMASRRYAGKDEIVPLKGSLYMTAAEWGRSWKPWLRGAAIGFPIGAMPAGGAEIPTFLSYAIEKKLSKHKQEFGTVGAIEGVAGPEAANNASAAGVLVPMLTLGLPTSATAAIMLSAFQSYGINPGPLLLTTQGDLVWGLIASLFIANVILVILNLPLIGLWVRLLKIPAPQLYAGILVFATVGTYGISQSPIDLVILYLLGAAGFLMRRFDFPTAPVIIGMILGPLAETQFRRAMTISNGDWSVFYTHKLSLTLLTLAFIGLAGPHIWAFIEHRRRRGPEHVPGDA
>NZ_CP015064.1|WP_063168998.1|5237411_5237948_-|tripartite-tricarboxylate-transporter-TctB-family-protein
MSTSDQQAAPSRLAVPELLIGIGLLACAGAVAWQTLAIPVSPLYSKVGPTVFPYLTMVGLVVLSLLLILAALRGGWQPEEEKETPTDWKAMGFVVIGLIANLLLIQPLGFTAASVIMFVLVCYGFGSKRTLRDVVLGLILALAAYFGFARALGVNIGAGFIENQLNTVIDAFITMLRG
>NZ_CP015064.1|WP_063173085.1|5238087_5239062_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MLDRRRFLMSTAAVGAGLMTSHLSPALAEGAPQIQLFVPAAPGGGWDQTARTIDQVLRSEKLISGSQITNVGGAGGTVGLPQFISQWNGKGNSLMVAGMVMVGAIIANKAANNLTQVTPIARLTGEFEALVVPAESPFKTAADFVAALKADPTKVPVAGGSAGGSDHILFGLIAKTVGVPATNLSYVPFAGGGEALSALLGNQVAAGISGFGEFSEQVKAGALRLLAISADKRQDGIDAPTLKEAGIDVELFNWRGVFAPPGISDADKAAMITLIGTMAKSDAWATECKNRNWTPILLTGDDYAKFVTEDSARIEAILKDLGLA
>NZ_CP015064.1|WP_013529610.1|5239245_5240010_+|IclR-family-transcriptional-regulator
MDSPSKSADAEIDRAEGVAALDRAIAILDAFSTEDRSLSLAEIAARTGLYKSTILRLANSLLRGRLLERLDNGRYRVGPATFRLGALYQRSVVAVDILLPIMRDLSERSWESVAFYVRSGDVRTCLYRVESKHPIRYTIREGDVLPLLLGSGGRVLAAFSGQQGEPYETIRKTCNCLAVGDRDPETGGVSAPVFGPGGVLLGALTLAGPSTRVDAAFLQRMKRPLLEAAARATRAFGEDASMLEQASLAADALP
>NZ_CP015064.1|WP_063173086.1|5240151_5240685_-|GNAT-family-N-acetyltransferase
MNNPQATSAPVIETKRTILRAHRLDDFDTYAAMWTDPLVTRFIGGKPRTREESWMRFLRHAGLWSLLGYGFWAIEEKATGRFIGEAGFHDLKRDMEPSIEGIPEAGWALVPAVHGAGFATEVVGRVLAWGEVIFGREKTVCIIDPENGASLRVAAKCGYREVVKTTYHDAPTILLAR
>NZ_CP015064.1|WP_024502811.1|5240887_5241343_+|DUF2214-family-protein
MDTTDLVLAIFHHLLVFSLAGIIGAEFVLIRGDLGAATLKRLAGIDRHYGVIAALIIVVGIGRVFYGLKGWEFYVYNWVFWAKIAAFGAVGLLSIIPTVRFISWNRQASGNASFQVPATELASVKTYIRAEAFIFLLIPVFAAAMARGYGY

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Crispr_ID: NZ_CP015064_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015064_6

5231043-5231140

Orphan

Consensus_repeat	Method
GCCGCCAGTGCCGCCGCCACCGCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015064_6

>merge|NZ_CP015064|6|5231043-5231140|CRISPRCasFinder
GCCACCCTTGCCGCCAGTGCCGCCGCCACCGCCGATGGCGACCGAAATTGCAGGCGCTACGCCGATGGCGTAGCCGCCATTGCCGCCGCCACCGCCGA

>NZ_CP015064|6|6|5231043-5231140|CRISPRCasFinder
GCCACCCTTGCCGCCAGTGCCGCCGC	CACCGCCGATGGCGACCGAAATTGCAGGCGCTACGCCGATGGCGTA
GCCGCCATTGCCGCCGCCACCGCCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015064.1\|WP_027161348.1\|5223600_5224179_-\|invasion-associated-locus-B-family-protein	unknown	unknown	gnl\|CDD\|227647
NZ_CP015064.1\|WP_024502799.1\|5219101_5219878_+\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	unknown	unknown	gnl\|CDD\|234689
NZ_CP015064.1\|WP_024502800.1\|5219948_5221523_+\|2-polyprenylphenol-6-hydroxylase	unknown	unknown	gnl\|CDD\|273909
NZ_CP015064.1\|WP_024502808.1\|5235883_5237407_-\|tripartite-tricarboxylate-transporter-permease	unknown	unknown	gnl\|CDD\|225870
NZ_CP015064.1\|WP_013529626.1\|5217216_5217846_-\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
NZ_CP015064.1\|WP_024502807.1\|5234683_5235868_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
NZ_CP015064.1\|WP_024502797.1\|5216429_5216993_-\|TIGR02281-family-clan-AA-aspartic-protease	unknown	unknown	gnl\|CDD\|226106
NZ_CP015064.1\|WP_063173086.1\|5240151_5240685_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP015064.1\|WP_063173083.1\|5215024_5216344_+\|thymidine-phosphorylase	unknown	unknown	gnl\|CDD\|131691
NZ_CP015064.1\|WP_063168998.1\|5237411_5237948_-\|tripartite-tricarboxylate-transporter-TctB-family-protein	unknown	unknown	gnl\|CDD\|377815
NZ_CP015064.1\|WP_027161350.1\|5221603_5221861_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|172484
NZ_CP015064.1\|WP_063168996.1\|5233835_5234687_-\|citryl-CoA-lyase	unknown	unknown	gnl\|CDD\|235748
NZ_CP015064.1\|WP_013529617.1\|5232925_5233234_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015064.1\|WP_063173085.1\|5238087_5239062_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|225722
NZ_CP015064.1\|WP_013529616.1\|5233360_5233831_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|240024
NZ_CP015064.1\|WP_027161349.1\|5221863_5222286_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350298
NZ_CP015064.1\|WP_013529610.1\|5239245_5240010_+\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP015064.1\|WP_024502802.1\|5222282_5223515_+\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	unknown	unknown	gnl\|CDD\|172484
NZ_CP015064.1\|WP_024502811.1\|5240887_5241343_+\|DUF2214-family-protein	unknown	unknown	gnl\|CDD\|226086
NZ_CP015064.1\|WP_027161351.1\|5217992_5218967_-\|adenosine-deaminase	unknown	unknown	gnl\|CDD\|273619

Protein	Function_ID	Function_description	E-value
NZ_CP015064.1\|WP_027161348.1\|5223600_5224179_-\|invasion-associated-locus-B-family-protein	gnl\|CDD\|227647	COG5342, COG5342, Invasion protein B, involved in pathogenesis [General function prediction only].	1.01633e-44
NZ_CP015064.1\|WP_024502799.1\|5219101_5219878_+\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	4.05549e-133
NZ_CP015064.1\|WP_024502800.1\|5219948_5221523_+\|2-polyprenylphenol-6-hydroxylase	gnl\|CDD\|273909	TIGR01982, Probable_protein_kinase_UbiB, 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol -> 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	0
NZ_CP015064.1\|WP_024502808.1\|5235883_5237407_-\|tripartite-tricarboxylate-transporter-permease	gnl\|CDD\|225870	COG3333, COG3333, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP015064.1\|WP_013529626.1\|5217216_5217846_-\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	1.11129e-132
NZ_CP015064.1\|WP_024502807.1\|5234683_5235868_-\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	8.28302e-145
NZ_CP015064.1\|WP_024502797.1\|5216429_5216993_-\|TIGR02281-family-clan-AA-aspartic-protease	gnl\|CDD\|226106	COG3577, COG3577, Predicted aspartyl protease [General function prediction only].	4.99522e-56
NZ_CP015064.1\|WP_063173086.1\|5240151_5240685_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	2.324e-32
NZ_CP015064.1\|WP_063173083.1\|5215024_5216344_+\|thymidine-phosphorylase	gnl\|CDD\|131691	TIGR02643, Thymidine_phosphorylase, thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_CP015064.1\|WP_063168998.1\|5237411_5237948_-\|tripartite-tricarboxylate-transporter-TctB-family-protein	gnl\|CDD\|377815	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family. This family consists of several hypothetical bacterial proteins of around 150 residues in length. This family was formerly known as DUF1468.	1.65179e-08
NZ_CP015064.1\|WP_027161350.1\|5221603_5221861_+\|hypothetical-protein	gnl\|CDD\|172484	PRK13982, PRK13982, bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional.	8.37248e-10
NZ_CP015064.1\|WP_063168996.1\|5233835_5234687_-\|citryl-CoA-lyase	gnl\|CDD\|235748	PRK06224, PRK06224, citryl-CoA lyase.	6.01687e-108
NZ_CP015064.1\|WP_063173085.1\|5238087_5239062_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|225722	COG3181, COG3181, Uncharacterized protein conserved in bacteria [Function unknown].	2.41936e-77
NZ_CP015064.1\|WP_013529616.1\|5233360_5233831_+\|NUDIX-hydrolase	gnl\|CDD\|240024	cd04666, Nudix_Hydrolase_9, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.78596e-48
NZ_CP015064.1\|WP_027161349.1\|5221863_5222286_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350298	cd18731, PIN_NgFitB-like, VapC-like PIN domain of Neisseria gonorrhoeae FitB and related proteins. This subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Neisseria gonorrhoeae FitB toxin of the FitAB toxin/antitoxin (TA) system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. In N. gonorrhoeae, FitA and FitB form a heterodimer: FitA is the DNA binding subunit and FitB contains a ribonuclease activity that is blocked by the presence of FitA. A tetramer of FitAB heterodimers binds DNA from the fitAB upstream promoter region with high affinity. This results in both sequestration of FitAB and repression of fitAB transcription. It is thought that FitAB release from the DNA and subsequent dissociation both slows N. gonorrhoeae replication and transcytosis by an as yet undefined mechanism. The toxin M. tuberculosis VapC is a structural homolog of N. gonorrhoeae FitB, but their antitoxin partners, VapB and FitA, respectively, differ structurally. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.8154e-57
NZ_CP015064.1\|WP_013529610.1\|5239245_5240010_+\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	1.60199e-45
NZ_CP015064.1\|WP_024502802.1\|5222282_5223515_+\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	gnl\|CDD\|172484	PRK13982, PRK13982, bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional.	0
NZ_CP015064.1\|WP_024502811.1\|5240887_5241343_+\|DUF2214-family-protein	gnl\|CDD\|226086	COG3556, COG3556, Predicted membrane protein [Function unknown].	1.4404e-61
NZ_CP015064.1\|WP_027161351.1\|5217992_5218967_-\|adenosine-deaminase	gnl\|CDD\|273619	TIGR01430, Putative_adenosine/adenine_deaminase, adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.	4.7163e-151

>NZ_CP015064.1|WP_027161348.1|5223600_5224179_-|invasion-associated-locus-B-family-protein
MRKFAYFLAMLGVACTVGVPAVAAQTKSDKAVAAPAAADAPQLPGGASALSETHGDWTVNCQISGATKTCSLSHQQFNKQNNQRLLAIELSSKTGEDATGTLALPFGLALAKGVSLTIDDQKLDGSLAFNTCQVVGCLVPVMFDATVTPLLKSGTTLKIDAFAADTGQAVSFSIPLNGFAGALARTAELLTN
>NZ_CP015064.1|WP_024502802.1|5222282_5223515_+|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC
MSLSGKRILLIIGGGIAAYKALDLIRRLRERGAAVRVVMTSAAQEFVTTLSVGALSADHVFTELFDRNDEHDVGHIRLSREADLLVVAPATADLMAKLANGHANDLASTVLVATDKPVLMAPAMNPRMWAHPATRRNRATLQKDGVTFVGPARGEMAESNETGEGRMAEPLEIVAAVEALLDVGPRPLSGRKIIVTSGPTHEPIDPVRYIANRSSGKQGHAIAAALARLGADVRLVSGPVGIADPPGVKTIHVERAQEMRDAVERLLPADAAVFVAAVADWRTENSAGEKIKKVAGEGPPVLRMVENPDILAGVGHHSQRPGLVIGFAAETQDLLRNAEAKLKKKGADLIVANDVSQGSGVGSSGVMGGDRNRVRIVSKAGVEEWPEMSKDEVAARLAALIAERLKTIVV
>NZ_CP015064.1|WP_027161349.1|5221863_5222286_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MFVLDTNVISETFKPRPDAGVATWMDSSLATRSYVTAMTKAELLVGLANMPDGTRKAALGSVIGAFFTKWLKTPVLAFGDREAEAYAEIASNRRFLARPIREFDAQIASVARSRGFAVVTRNVADFSDCGISIVNPWEGA
>NZ_CP015064.1|WP_027161350.1|5221603_5221861_+|hypothetical-protein
MSTLTIRNLDTYVKQKLRERAAVRGVSMEEEARSVLAKSVLSDGVDQDPRGESLYAAIRRLVEPHGGFDVELPERGPPREPLKFD
>NZ_CP015064.1|WP_024502800.1|5219948_5221523_+|2-polyprenylphenol-6-hydroxylase
MSNVSAGFRLVRAGWVLVREGVVAALPGEELSGLPKFGWRMARLFTRRRALAYERSDRLAKAVVRLGPSYVKLGQFLATRPDVVGNDMALDLAMLQDKMHTFPKAEAIAAIEASLGRKVGDLYAQFGDPVAAASIAQVHAADAMHDGVATKVAVKVIRPGVRRRFFQDLESYFLAARLQEKYIPSSRRLRPVEVTQTLAQTTKIEMDLRLEAAALSELGESTRHDPGFRVPSVDWERTGRDVLTMEWVDGVKMNDIAGLVAAGHDLKTIATNLIQSFLRHTLRDGFFHADMHPGNLFVEANGTIVAVDLGIAGRLGKKERRFLAEILYGFITRDYLRVAEVHFEAGYVPRQHNVAAFAQAIRAIGEPIHGQPAETISMAKLLTLLFEVTELFDMATRPELILLQKTMVVVEGVARTLDPAFNMWKTAEPVVGDWISGNLGPRGMMMDARDGAKALLTLARQVPELAARTDRLSREIDLMAEHGLRFDETTAHAIGKAEARYSRSGRWALWVIALTLVYIAWKMI
>NZ_CP015064.1|WP_024502799.1|5219101_5219878_+|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE
MSVERTTAAGGMETSYGFKRVGAGDKQSLVNDVFHKVANRYDLMNDLMSAGLHRLWKDAMVTWLNPPKRAGWKVLDVAGGTGDIAFRIVDASHGNAHATVLDINGSMLAVGRDRAEKKGLSGNTDFVEANAEELPFPDATFDAYTIAFGIRNVPRIEVALGEAFRVLKPGGRFLCLEFSEVEMPLLDKAYEAWSFNAIPKIGKMVTGDGEPYSYLVESIARFPNQQNFTTMISRAGFDRVSFRNYSGGIAALHSGWKL
>NZ_CP015064.1|WP_027161351.1|5217992_5218967_-|adenosine-deaminase
MPLKAELHCHIEGAAAPELVIRQAQKYGKDTSPYIQNGSFVWHDFTSFLAAYDFSADLFRTEEDYARLADHYLTSLARDGAIYSEVFTSPDHAKKAGLSPKAYTDALGEGMARAKAKTGIEGRMIVTGVRHVGVESIEQAARFAARCGHPLVTGFGVAGDERVGDMEDYVRAFEIAREAGLGITIHAGELTGWETVQAALDHIRPSRIGHGVRAIENPDLVRRIADEGVVLECCPGSNIALKVFDSFADHPFPALQAAGCKVTLNSDDPPYFWTSLKREYDIATEHFSMNDKALTAVTRTAIEAAFVDRKTKTALLARLNSAAR
>NZ_CP015064.1|WP_013529626.1|5217216_5217846_-|uracil-phosphoribosyltransferase
MQGVTVVDHPLVQHKLTIMRKKETSTAGFRRLLREISLLLGYEVTRNLELTTTTIETPMETMEAPTLEGKKLVFASVLRAGNGLLEGLLDLVPAARVAHVGLYRDHETLEAVEYFFKAPSDLADRLVIVVDPMLATANSAIAAIDKLKERGATNIRFLCLLAAPEGIERFIKAHPDVPVFTASIDRQLNEKGYIMPGLGDAGDRMYGTK
>NZ_CP015064.1|WP_024502797.1|5216429_5216993_-|TIGR02281-family-clan-AA-aspartic-protease
MLRKLLILAVFAGTSASIPIVYQSNPQLVENLLRSAVPGKQAVEAQPNVNLASVPNKPAAPLPMGRKVLVAADERGHFSSPFKLNGRQVDGMIDTGATLVAINISTARRIGLSLNASDFNREVNTANGTIKAAVAMIDRLQIGSITVNDVQTIVLDDRALRTNLIGMSFLNRLDKYQVENGTLLLVQ
>NZ_CP015064.1|WP_063173083.1|5215024_5216344_+|thymidine-phosphorylase
MLPQEIIRRKRDGLRLSEEEIAGFVAGVTSGAVTDGQAGAFAMAVFFNGMNRDEAVALTLAMRDSGDVLDWSDLPGPVTDKHSTGGVGDNVSLMLAPIVAACGAYVPMISGRGLGHTGGTLDKMDAIPGYISQPDVALFRKAVLETGCAIIGQTADLAPADRRLYAIRDVSGTVESVPLITASILSKKLAAGLQSLVLDVKVGNGAFMEKSRDATALANSLVEIANGAGLKASALITGMNEPLASAAGNAVEVRNAVDFLTGRYRDRRLEDVTLALAAEMLQSAGLVSSNQDGMRRATETLASGRAAATFARMVAALGGPADFIEKPEKYLPAAATELAVKATANGFVTGIATRDIGLAVVGLGAGRTRPDDQIDPAVGITRLLPVGAEVGIGEPLALIHARSSADAETAAATVLSAYMVGASKPPADKSVIRRILPRG
>NZ_CP015064.1|WP_013529617.1|5232925_5233234_+|hypothetical-protein
MSALRPSTIFTVAMLATAVLAGVCLPASAQALNPATGNNALIRQNDLQILQNRIQRQQYQQQQQQNRAQDRQIFQQPPPVVQQLKPSCQTQIIGTTAVSNCR
>NZ_CP015064.1|WP_013529616.1|5233360_5233831_+|NUDIX-hydrolase
MAATKKKAVRKAKKGERIRQVAAIPFRLTARGDIEVMLVTSRTTRRFIVPKGWPMKGKSGRKAATIEAQEEAGVLGKTLKQPAGTYSYWKRLANRFVRVDVIVYLLEVSEELADWQEAKRRQRAWLAPADAAMLIDEPDLSTLVKTLKIPVQVDQA
>NZ_CP015064.1|WP_063168996.1|5233835_5234687_-|citryl-CoA-lyase
MSGTEKKTGRERGEEWWQTDIIEMRPGVIRLRGYEIQDLIGRVSFPAVIWLMLRGELPSEDQAELLGIALAAAVDHGPQAPSIAIARMAATCGVGINSAMASAINVLGDVHGGAGEQALSFYGDIAVAIDAGMTLNEAVSARLDRFFAEEKGYVPGLGHRFHPVDPRAPRLLELTREFAARGAVNGRFADIAEAVEADVERRKGKKIPLNIDGATAVIYGELGFPPPLTRGLFVLSRSVGILAHAWEQSQQAERNKGPLPREWLWAYTGTPVRPFPESDDPGE
>NZ_CP015064.1|WP_024502807.1|5234683_5235868_-|CoA-transferase
MTELLSGIRVLDLTNVLAGPYCAYQLALLGADVIKVEAPQGGDLARQLGGSPKLNSAGMGASFLAQNAGKRSVVLDLKKQADRERFFDLVASADALVENFRPGVMDRLGLGYEALKTVRPGLVYCAISGFGQTGPMRDNPAYDQIIQGLSGIMSITGTPETAPLRVGYPVADTLGGLVGAFAIASALVRQKTSGEGAFLDVSMLECTLSALGWPVSNYLTAGIDPMPMGNENMTAAPSGAFRTGDGLINIAANKQEQFVALCRLIGRPELASDVRYAERETRKRNRAALKVEIEDALAGASAAAWEETLNRAGVPAGRVLTIPQVLAEPQVLERQVTAHFDDVAGMDKPLTVLRGGFMVDGEAPLPTKPPPALGEHMSEVFADLPPRTRTKARA
>NZ_CP015064.1|WP_024502808.1|5235883_5237407_-|tripartite-tricarboxylate-transporter-permease
METLGHLSHGFSVAFTPVNLLWCLLGTTLGTAIGVLPGLGPALTIALLLPITYQVAPEASFILFAGIYYGAMYGGSTTSILLNTPGESATIVTALEGNRMARSGRGGAALATSAIGSFVAGTIGTMGVAFLAPVVVKFALAFGPAEYFSLMVLAFITVSAVLGSSSVRGLTSLFAGFVIGMIGVDLQTGQPRFTFGMTELLDGVDVIIAAVGLFAVGETLYMASRRYAGKDEIVPLKGSLYMTAAEWGRSWKPWLRGAAIGFPIGAMPAGGAEIPTFLSYAIEKKLSKHKQEFGTVGAIEGVAGPEAANNASAAGVLVPMLTLGLPTSATAAIMLSAFQSYGINPGPLLLTTQGDLVWGLIASLFIANVILVILNLPLIGLWVRLLKIPAPQLYAGILVFATVGTYGISQSPIDLVILYLLGAAGFLMRRFDFPTAPVIIGMILGPLAETQFRRAMTISNGDWSVFYTHKLSLTLLTLAFIGLAGPHIWAFIEHRRRRGPEHVPGDA
>NZ_CP015064.1|WP_063168998.1|5237411_5237948_-|tripartite-tricarboxylate-transporter-TctB-family-protein
MSTSDQQAAPSRLAVPELLIGIGLLACAGAVAWQTLAIPVSPLYSKVGPTVFPYLTMVGLVVLSLLLILAALRGGWQPEEEKETPTDWKAMGFVVIGLIANLLLIQPLGFTAASVIMFVLVCYGFGSKRTLRDVVLGLILALAAYFGFARALGVNIGAGFIENQLNTVIDAFITMLRG
>NZ_CP015064.1|WP_063173085.1|5238087_5239062_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MLDRRRFLMSTAAVGAGLMTSHLSPALAEGAPQIQLFVPAAPGGGWDQTARTIDQVLRSEKLISGSQITNVGGAGGTVGLPQFISQWNGKGNSLMVAGMVMVGAIIANKAANNLTQVTPIARLTGEFEALVVPAESPFKTAADFVAALKADPTKVPVAGGSAGGSDHILFGLIAKTVGVPATNLSYVPFAGGGEALSALLGNQVAAGISGFGEFSEQVKAGALRLLAISADKRQDGIDAPTLKEAGIDVELFNWRGVFAPPGISDADKAAMITLIGTMAKSDAWATECKNRNWTPILLTGDDYAKFVTEDSARIEAILKDLGLA
>NZ_CP015064.1|WP_013529610.1|5239245_5240010_+|IclR-family-transcriptional-regulator
MDSPSKSADAEIDRAEGVAALDRAIAILDAFSTEDRSLSLAEIAARTGLYKSTILRLANSLLRGRLLERLDNGRYRVGPATFRLGALYQRSVVAVDILLPIMRDLSERSWESVAFYVRSGDVRTCLYRVESKHPIRYTIREGDVLPLLLGSGGRVLAAFSGQQGEPYETIRKTCNCLAVGDRDPETGGVSAPVFGPGGVLLGALTLAGPSTRVDAAFLQRMKRPLLEAAARATRAFGEDASMLEQASLAADALP
>NZ_CP015064.1|WP_063173086.1|5240151_5240685_-|GNAT-family-N-acetyltransferase
MNNPQATSAPVIETKRTILRAHRLDDFDTYAAMWTDPLVTRFIGGKPRTREESWMRFLRHAGLWSLLGYGFWAIEEKATGRFIGEAGFHDLKRDMEPSIEGIPEAGWALVPAVHGAGFATEVVGRVLAWGEVIFGREKTVCIIDPENGASLRVAAKCGYREVVKTTYHDAPTILLAR
>NZ_CP015064.1|WP_024502811.1|5240887_5241343_+|DUF2214-family-protein
MDTTDLVLAIFHHLLVFSLAGIIGAEFVLIRGDLGAATLKRLAGIDRHYGVIAALIIVVGIGRVFYGLKGWEFYVYNWVFWAKIAAFGAVGLLSIIPTVRFISWNRQASGNASFQVPATELASVKTYIRAEAFIFLLIPVFAAAMARGYGY

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Crispr_ID: NZ_CP015064_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015064_3

5229300-5229398

Orphan

Consensus_repeat	Method
GCCATCGCCGCCACCGCCGCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015064_3

>merge|NZ_CP015064|3|5229300-5229398|CRISPRCasFinder
GCCATCGCCGCCACCGCCGCCGATCGCCACGGAAGCGGCGCCGAACAGACCGACGGCAAACGTTCCGACAGATCCGCCATTGCCGCCACCGCCGCCGAC

>NZ_CP015064|3|3|5229300-5229398|CRISPRCasFinder
GCCATCGCCGCCACCGCCGCCGA	TCGCCACGGAAGCGGCGCCGAACAGACCGACGGCAAACGTTCCGACAGATCC
GCCATTGCCGCCACCGCCGCCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015064.1\|WP_027161348.1\|5223600_5224179_-\|invasion-associated-locus-B-family-protein	unknown	unknown	gnl\|CDD\|227647
NZ_CP015064.1\|WP_024502799.1\|5219101_5219878_+\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	unknown	unknown	gnl\|CDD\|234689
NZ_CP015064.1\|WP_024502800.1\|5219948_5221523_+\|2-polyprenylphenol-6-hydroxylase	unknown	unknown	gnl\|CDD\|273909
NZ_CP015064.1\|WP_024502808.1\|5235883_5237407_-\|tripartite-tricarboxylate-transporter-permease	unknown	unknown	gnl\|CDD\|225870
NZ_CP015064.1\|WP_013529626.1\|5217216_5217846_-\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
NZ_CP015064.1\|WP_024502807.1\|5234683_5235868_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
NZ_CP015064.1\|WP_024502797.1\|5216429_5216993_-\|TIGR02281-family-clan-AA-aspartic-protease	unknown	unknown	gnl\|CDD\|226106
NZ_CP015064.1\|WP_063173086.1\|5240151_5240685_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP015064.1\|WP_063173083.1\|5215024_5216344_+\|thymidine-phosphorylase	unknown	unknown	gnl\|CDD\|131691
NZ_CP015064.1\|WP_063168998.1\|5237411_5237948_-\|tripartite-tricarboxylate-transporter-TctB-family-protein	unknown	unknown	gnl\|CDD\|377815
NZ_CP015064.1\|WP_027161350.1\|5221603_5221861_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|172484
NZ_CP015064.1\|WP_063168996.1\|5233835_5234687_-\|citryl-CoA-lyase	unknown	unknown	gnl\|CDD\|235748
NZ_CP015064.1\|WP_013529617.1\|5232925_5233234_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015064.1\|WP_063173085.1\|5238087_5239062_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|225722
NZ_CP015064.1\|WP_013529616.1\|5233360_5233831_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|240024
NZ_CP015064.1\|WP_027161349.1\|5221863_5222286_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350298
NZ_CP015064.1\|WP_013529610.1\|5239245_5240010_+\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP015064.1\|WP_024502802.1\|5222282_5223515_+\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	unknown	unknown	gnl\|CDD\|172484
NZ_CP015064.1\|WP_024502811.1\|5240887_5241343_+\|DUF2214-family-protein	unknown	unknown	gnl\|CDD\|226086
NZ_CP015064.1\|WP_027161351.1\|5217992_5218967_-\|adenosine-deaminase	unknown	unknown	gnl\|CDD\|273619

Protein	Function_ID	Function_description	E-value
NZ_CP015064.1\|WP_027161348.1\|5223600_5224179_-\|invasion-associated-locus-B-family-protein	gnl\|CDD\|227647	COG5342, COG5342, Invasion protein B, involved in pathogenesis [General function prediction only].	1.01633e-44
NZ_CP015064.1\|WP_024502799.1\|5219101_5219878_+\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	4.05549e-133
NZ_CP015064.1\|WP_024502800.1\|5219948_5221523_+\|2-polyprenylphenol-6-hydroxylase	gnl\|CDD\|273909	TIGR01982, Probable_protein_kinase_UbiB, 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol -> 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	0
NZ_CP015064.1\|WP_024502808.1\|5235883_5237407_-\|tripartite-tricarboxylate-transporter-permease	gnl\|CDD\|225870	COG3333, COG3333, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP015064.1\|WP_013529626.1\|5217216_5217846_-\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	1.11129e-132
NZ_CP015064.1\|WP_024502807.1\|5234683_5235868_-\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	8.28302e-145
NZ_CP015064.1\|WP_024502797.1\|5216429_5216993_-\|TIGR02281-family-clan-AA-aspartic-protease	gnl\|CDD\|226106	COG3577, COG3577, Predicted aspartyl protease [General function prediction only].	4.99522e-56
NZ_CP015064.1\|WP_063173086.1\|5240151_5240685_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	2.324e-32
NZ_CP015064.1\|WP_063173083.1\|5215024_5216344_+\|thymidine-phosphorylase	gnl\|CDD\|131691	TIGR02643, Thymidine_phosphorylase, thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_CP015064.1\|WP_063168998.1\|5237411_5237948_-\|tripartite-tricarboxylate-transporter-TctB-family-protein	gnl\|CDD\|377815	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family. This family consists of several hypothetical bacterial proteins of around 150 residues in length. This family was formerly known as DUF1468.	1.65179e-08
NZ_CP015064.1\|WP_027161350.1\|5221603_5221861_+\|hypothetical-protein	gnl\|CDD\|172484	PRK13982, PRK13982, bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional.	8.37248e-10
NZ_CP015064.1\|WP_063168996.1\|5233835_5234687_-\|citryl-CoA-lyase	gnl\|CDD\|235748	PRK06224, PRK06224, citryl-CoA lyase.	6.01687e-108
NZ_CP015064.1\|WP_063173085.1\|5238087_5239062_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|225722	COG3181, COG3181, Uncharacterized protein conserved in bacteria [Function unknown].	2.41936e-77
NZ_CP015064.1\|WP_013529616.1\|5233360_5233831_+\|NUDIX-hydrolase	gnl\|CDD\|240024	cd04666, Nudix_Hydrolase_9, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.78596e-48
NZ_CP015064.1\|WP_027161349.1\|5221863_5222286_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350298	cd18731, PIN_NgFitB-like, VapC-like PIN domain of Neisseria gonorrhoeae FitB and related proteins. This subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Neisseria gonorrhoeae FitB toxin of the FitAB toxin/antitoxin (TA) system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. In N. gonorrhoeae, FitA and FitB form a heterodimer: FitA is the DNA binding subunit and FitB contains a ribonuclease activity that is blocked by the presence of FitA. A tetramer of FitAB heterodimers binds DNA from the fitAB upstream promoter region with high affinity. This results in both sequestration of FitAB and repression of fitAB transcription. It is thought that FitAB release from the DNA and subsequent dissociation both slows N. gonorrhoeae replication and transcytosis by an as yet undefined mechanism. The toxin M. tuberculosis VapC is a structural homolog of N. gonorrhoeae FitB, but their antitoxin partners, VapB and FitA, respectively, differ structurally. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.8154e-57
NZ_CP015064.1\|WP_013529610.1\|5239245_5240010_+\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	1.60199e-45
NZ_CP015064.1\|WP_024502802.1\|5222282_5223515_+\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	gnl\|CDD\|172484	PRK13982, PRK13982, bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional.	0
NZ_CP015064.1\|WP_024502811.1\|5240887_5241343_+\|DUF2214-family-protein	gnl\|CDD\|226086	COG3556, COG3556, Predicted membrane protein [Function unknown].	1.4404e-61
NZ_CP015064.1\|WP_027161351.1\|5217992_5218967_-\|adenosine-deaminase	gnl\|CDD\|273619	TIGR01430, Putative_adenosine/adenine_deaminase, adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.	4.7163e-151

>NZ_CP015064.1|WP_027161348.1|5223600_5224179_-|invasion-associated-locus-B-family-protein
MRKFAYFLAMLGVACTVGVPAVAAQTKSDKAVAAPAAADAPQLPGGASALSETHGDWTVNCQISGATKTCSLSHQQFNKQNNQRLLAIELSSKTGEDATGTLALPFGLALAKGVSLTIDDQKLDGSLAFNTCQVVGCLVPVMFDATVTPLLKSGTTLKIDAFAADTGQAVSFSIPLNGFAGALARTAELLTN
>NZ_CP015064.1|WP_024502802.1|5222282_5223515_+|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC
MSLSGKRILLIIGGGIAAYKALDLIRRLRERGAAVRVVMTSAAQEFVTTLSVGALSADHVFTELFDRNDEHDVGHIRLSREADLLVVAPATADLMAKLANGHANDLASTVLVATDKPVLMAPAMNPRMWAHPATRRNRATLQKDGVTFVGPARGEMAESNETGEGRMAEPLEIVAAVEALLDVGPRPLSGRKIIVTSGPTHEPIDPVRYIANRSSGKQGHAIAAALARLGADVRLVSGPVGIADPPGVKTIHVERAQEMRDAVERLLPADAAVFVAAVADWRTENSAGEKIKKVAGEGPPVLRMVENPDILAGVGHHSQRPGLVIGFAAETQDLLRNAEAKLKKKGADLIVANDVSQGSGVGSSGVMGGDRNRVRIVSKAGVEEWPEMSKDEVAARLAALIAERLKTIVV
>NZ_CP015064.1|WP_027161349.1|5221863_5222286_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MFVLDTNVISETFKPRPDAGVATWMDSSLATRSYVTAMTKAELLVGLANMPDGTRKAALGSVIGAFFTKWLKTPVLAFGDREAEAYAEIASNRRFLARPIREFDAQIASVARSRGFAVVTRNVADFSDCGISIVNPWEGA
>NZ_CP015064.1|WP_027161350.1|5221603_5221861_+|hypothetical-protein
MSTLTIRNLDTYVKQKLRERAAVRGVSMEEEARSVLAKSVLSDGVDQDPRGESLYAAIRRLVEPHGGFDVELPERGPPREPLKFD
>NZ_CP015064.1|WP_024502800.1|5219948_5221523_+|2-polyprenylphenol-6-hydroxylase
MSNVSAGFRLVRAGWVLVREGVVAALPGEELSGLPKFGWRMARLFTRRRALAYERSDRLAKAVVRLGPSYVKLGQFLATRPDVVGNDMALDLAMLQDKMHTFPKAEAIAAIEASLGRKVGDLYAQFGDPVAAASIAQVHAADAMHDGVATKVAVKVIRPGVRRRFFQDLESYFLAARLQEKYIPSSRRLRPVEVTQTLAQTTKIEMDLRLEAAALSELGESTRHDPGFRVPSVDWERTGRDVLTMEWVDGVKMNDIAGLVAAGHDLKTIATNLIQSFLRHTLRDGFFHADMHPGNLFVEANGTIVAVDLGIAGRLGKKERRFLAEILYGFITRDYLRVAEVHFEAGYVPRQHNVAAFAQAIRAIGEPIHGQPAETISMAKLLTLLFEVTELFDMATRPELILLQKTMVVVEGVARTLDPAFNMWKTAEPVVGDWISGNLGPRGMMMDARDGAKALLTLARQVPELAARTDRLSREIDLMAEHGLRFDETTAHAIGKAEARYSRSGRWALWVIALTLVYIAWKMI
>NZ_CP015064.1|WP_024502799.1|5219101_5219878_+|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE
MSVERTTAAGGMETSYGFKRVGAGDKQSLVNDVFHKVANRYDLMNDLMSAGLHRLWKDAMVTWLNPPKRAGWKVLDVAGGTGDIAFRIVDASHGNAHATVLDINGSMLAVGRDRAEKKGLSGNTDFVEANAEELPFPDATFDAYTIAFGIRNVPRIEVALGEAFRVLKPGGRFLCLEFSEVEMPLLDKAYEAWSFNAIPKIGKMVTGDGEPYSYLVESIARFPNQQNFTTMISRAGFDRVSFRNYSGGIAALHSGWKL
>NZ_CP015064.1|WP_027161351.1|5217992_5218967_-|adenosine-deaminase
MPLKAELHCHIEGAAAPELVIRQAQKYGKDTSPYIQNGSFVWHDFTSFLAAYDFSADLFRTEEDYARLADHYLTSLARDGAIYSEVFTSPDHAKKAGLSPKAYTDALGEGMARAKAKTGIEGRMIVTGVRHVGVESIEQAARFAARCGHPLVTGFGVAGDERVGDMEDYVRAFEIAREAGLGITIHAGELTGWETVQAALDHIRPSRIGHGVRAIENPDLVRRIADEGVVLECCPGSNIALKVFDSFADHPFPALQAAGCKVTLNSDDPPYFWTSLKREYDIATEHFSMNDKALTAVTRTAIEAAFVDRKTKTALLARLNSAAR
>NZ_CP015064.1|WP_013529626.1|5217216_5217846_-|uracil-phosphoribosyltransferase
MQGVTVVDHPLVQHKLTIMRKKETSTAGFRRLLREISLLLGYEVTRNLELTTTTIETPMETMEAPTLEGKKLVFASVLRAGNGLLEGLLDLVPAARVAHVGLYRDHETLEAVEYFFKAPSDLADRLVIVVDPMLATANSAIAAIDKLKERGATNIRFLCLLAAPEGIERFIKAHPDVPVFTASIDRQLNEKGYIMPGLGDAGDRMYGTK
>NZ_CP015064.1|WP_024502797.1|5216429_5216993_-|TIGR02281-family-clan-AA-aspartic-protease
MLRKLLILAVFAGTSASIPIVYQSNPQLVENLLRSAVPGKQAVEAQPNVNLASVPNKPAAPLPMGRKVLVAADERGHFSSPFKLNGRQVDGMIDTGATLVAINISTARRIGLSLNASDFNREVNTANGTIKAAVAMIDRLQIGSITVNDVQTIVLDDRALRTNLIGMSFLNRLDKYQVENGTLLLVQ
>NZ_CP015064.1|WP_063173083.1|5215024_5216344_+|thymidine-phosphorylase
MLPQEIIRRKRDGLRLSEEEIAGFVAGVTSGAVTDGQAGAFAMAVFFNGMNRDEAVALTLAMRDSGDVLDWSDLPGPVTDKHSTGGVGDNVSLMLAPIVAACGAYVPMISGRGLGHTGGTLDKMDAIPGYISQPDVALFRKAVLETGCAIIGQTADLAPADRRLYAIRDVSGTVESVPLITASILSKKLAAGLQSLVLDVKVGNGAFMEKSRDATALANSLVEIANGAGLKASALITGMNEPLASAAGNAVEVRNAVDFLTGRYRDRRLEDVTLALAAEMLQSAGLVSSNQDGMRRATETLASGRAAATFARMVAALGGPADFIEKPEKYLPAAATELAVKATANGFVTGIATRDIGLAVVGLGAGRTRPDDQIDPAVGITRLLPVGAEVGIGEPLALIHARSSADAETAAATVLSAYMVGASKPPADKSVIRRILPRG
>NZ_CP015064.1|WP_013529617.1|5232925_5233234_+|hypothetical-protein
MSALRPSTIFTVAMLATAVLAGVCLPASAQALNPATGNNALIRQNDLQILQNRIQRQQYQQQQQQNRAQDRQIFQQPPPVVQQLKPSCQTQIIGTTAVSNCR
>NZ_CP015064.1|WP_013529616.1|5233360_5233831_+|NUDIX-hydrolase
MAATKKKAVRKAKKGERIRQVAAIPFRLTARGDIEVMLVTSRTTRRFIVPKGWPMKGKSGRKAATIEAQEEAGVLGKTLKQPAGTYSYWKRLANRFVRVDVIVYLLEVSEELADWQEAKRRQRAWLAPADAAMLIDEPDLSTLVKTLKIPVQVDQA
>NZ_CP015064.1|WP_063168996.1|5233835_5234687_-|citryl-CoA-lyase
MSGTEKKTGRERGEEWWQTDIIEMRPGVIRLRGYEIQDLIGRVSFPAVIWLMLRGELPSEDQAELLGIALAAAVDHGPQAPSIAIARMAATCGVGINSAMASAINVLGDVHGGAGEQALSFYGDIAVAIDAGMTLNEAVSARLDRFFAEEKGYVPGLGHRFHPVDPRAPRLLELTREFAARGAVNGRFADIAEAVEADVERRKGKKIPLNIDGATAVIYGELGFPPPLTRGLFVLSRSVGILAHAWEQSQQAERNKGPLPREWLWAYTGTPVRPFPESDDPGE
>NZ_CP015064.1|WP_024502807.1|5234683_5235868_-|CoA-transferase
MTELLSGIRVLDLTNVLAGPYCAYQLALLGADVIKVEAPQGGDLARQLGGSPKLNSAGMGASFLAQNAGKRSVVLDLKKQADRERFFDLVASADALVENFRPGVMDRLGLGYEALKTVRPGLVYCAISGFGQTGPMRDNPAYDQIIQGLSGIMSITGTPETAPLRVGYPVADTLGGLVGAFAIASALVRQKTSGEGAFLDVSMLECTLSALGWPVSNYLTAGIDPMPMGNENMTAAPSGAFRTGDGLINIAANKQEQFVALCRLIGRPELASDVRYAERETRKRNRAALKVEIEDALAGASAAAWEETLNRAGVPAGRVLTIPQVLAEPQVLERQVTAHFDDVAGMDKPLTVLRGGFMVDGEAPLPTKPPPALGEHMSEVFADLPPRTRTKARA
>NZ_CP015064.1|WP_024502808.1|5235883_5237407_-|tripartite-tricarboxylate-transporter-permease
METLGHLSHGFSVAFTPVNLLWCLLGTTLGTAIGVLPGLGPALTIALLLPITYQVAPEASFILFAGIYYGAMYGGSTTSILLNTPGESATIVTALEGNRMARSGRGGAALATSAIGSFVAGTIGTMGVAFLAPVVVKFALAFGPAEYFSLMVLAFITVSAVLGSSSVRGLTSLFAGFVIGMIGVDLQTGQPRFTFGMTELLDGVDVIIAAVGLFAVGETLYMASRRYAGKDEIVPLKGSLYMTAAEWGRSWKPWLRGAAIGFPIGAMPAGGAEIPTFLSYAIEKKLSKHKQEFGTVGAIEGVAGPEAANNASAAGVLVPMLTLGLPTSATAAIMLSAFQSYGINPGPLLLTTQGDLVWGLIASLFIANVILVILNLPLIGLWVRLLKIPAPQLYAGILVFATVGTYGISQSPIDLVILYLLGAAGFLMRRFDFPTAPVIIGMILGPLAETQFRRAMTISNGDWSVFYTHKLSLTLLTLAFIGLAGPHIWAFIEHRRRRGPEHVPGDA
>NZ_CP015064.1|WP_063168998.1|5237411_5237948_-|tripartite-tricarboxylate-transporter-TctB-family-protein
MSTSDQQAAPSRLAVPELLIGIGLLACAGAVAWQTLAIPVSPLYSKVGPTVFPYLTMVGLVVLSLLLILAALRGGWQPEEEKETPTDWKAMGFVVIGLIANLLLIQPLGFTAASVIMFVLVCYGFGSKRTLRDVVLGLILALAAYFGFARALGVNIGAGFIENQLNTVIDAFITMLRG
>NZ_CP015064.1|WP_063173085.1|5238087_5239062_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MLDRRRFLMSTAAVGAGLMTSHLSPALAEGAPQIQLFVPAAPGGGWDQTARTIDQVLRSEKLISGSQITNVGGAGGTVGLPQFISQWNGKGNSLMVAGMVMVGAIIANKAANNLTQVTPIARLTGEFEALVVPAESPFKTAADFVAALKADPTKVPVAGGSAGGSDHILFGLIAKTVGVPATNLSYVPFAGGGEALSALLGNQVAAGISGFGEFSEQVKAGALRLLAISADKRQDGIDAPTLKEAGIDVELFNWRGVFAPPGISDADKAAMITLIGTMAKSDAWATECKNRNWTPILLTGDDYAKFVTEDSARIEAILKDLGLA
>NZ_CP015064.1|WP_013529610.1|5239245_5240010_+|IclR-family-transcriptional-regulator
MDSPSKSADAEIDRAEGVAALDRAIAILDAFSTEDRSLSLAEIAARTGLYKSTILRLANSLLRGRLLERLDNGRYRVGPATFRLGALYQRSVVAVDILLPIMRDLSERSWESVAFYVRSGDVRTCLYRVESKHPIRYTIREGDVLPLLLGSGGRVLAAFSGQQGEPYETIRKTCNCLAVGDRDPETGGVSAPVFGPGGVLLGALTLAGPSTRVDAAFLQRMKRPLLEAAARATRAFGEDASMLEQASLAADALP
>NZ_CP015064.1|WP_063173086.1|5240151_5240685_-|GNAT-family-N-acetyltransferase
MNNPQATSAPVIETKRTILRAHRLDDFDTYAAMWTDPLVTRFIGGKPRTREESWMRFLRHAGLWSLLGYGFWAIEEKATGRFIGEAGFHDLKRDMEPSIEGIPEAGWALVPAVHGAGFATEVVGRVLAWGEVIFGREKTVCIIDPENGASLRVAAKCGYREVVKTTYHDAPTILLAR
>NZ_CP015064.1|WP_024502811.1|5240887_5241343_+|DUF2214-family-protein
MDTTDLVLAIFHHLLVFSLAGIIGAEFVLIRGDLGAATLKRLAGIDRHYGVIAALIIVVGIGRVFYGLKGWEFYVYNWVFWAKIAAFGAVGLLSIIPTVRFISWNRQASGNASFQVPATELASVKTYIRAEAFIFLLIPVFAAAMARGYGY

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Crispr_ID: NZ_CP015064_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015064_7

5783806-5783951

Orphan

Consensus_repeat	Method
GTCCGGTCAGTTCATCGTCGGGATGACGAATTCGGCACCGTCCTTGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015064_7

>merge|NZ_CP015064|7|5783806-5783951|CRISPRCasFinder
GTCCGGTCAGTTCATCGTCGGGATGACGAATTCGGCACCGTCCTTGATGCCTGCCCGCGCGACCGCAGCCGAAGGCGAGGACGCGTAACCAGGAAATCGTCCGGTCAGTTCATCGTCGGGATGACGAATTCGGCACCGTCCTTGAT

>NZ_CP015064|7|7|5783806-5783951|CRISPRCasFinder
GTCCGGTCAGTTCATCGTCGGGATGACGAATTCGGCACCGTCCTTGAT	GCCTGCCCGCGCGACCGCAGCCGAAGGCGAGGACGCGTAACCAGGAAATC
GTCCGGTCAGTTCATCGTCGGGATGACGAATTCGGCACCGTCCTTGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015064.1\|WP_027162554.1\|5791255_5791678_-\|nucleoside-diphosphate-kinase-regulator	unknown	unknown	gnl\|CDD\|180236
NZ_CP015064.1\|WP_013529084.1\|5786721_5787165_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|153095
NZ_CP015064.1\|WP_013529095.1\|5774050_5774779_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223487
NZ_CP015064.1\|WP_024502893.1\|5780205_5781525_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_CP015064.1\|WP_013529096.1\|5773591_5773939_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015064.1\|WP_024502886.1\|5789322_5790579_-\|D-amino-acid-dehydrogenase	unknown	unknown	gnl\|CDD\|234819
NZ_CP015064.1\|WP_013529092.1\|5777934_5778837_-\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182689
NZ_CP015064.1\|WP_013529085.1\|5785623_5786505_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP015064.1\|WP_024502890.1\|5783294_5783594_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015064.1\|WP_081714251.1\|5790698_5791253_-\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|180236
NZ_CP015064.1\|WP_063173268.1\|5791952_5793092_-\|alanine-racemase	unknown	unknown	gnl\|CDD\|223858
NZ_CP015064.1\|WP_063173265.1\|5779171_5780173_-\|4-hydroxyproline-epimerase	unknown	unknown	gnl\|CDD\|184428
NZ_CP015064.1\|WP_063173267.1\|5787161_5789318_+\|phospholipase	unknown	unknown	gnl\|CDD\|224419
NZ_CP015064.1\|WP_063173818.1\|5781586_5782480_-\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|223406
NZ_CP015064.1\|WP_063173264.1\|5774778_5776335_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223488
NZ_CP015064.1\|WP_063173266.1\|5782549_5783242_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP015064.1\|WP_024502881.1\|5795152_5796484_-\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|223864
NZ_CP015064.1\|WP_013529093.1\|5776334_5777930_-\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM	unknown	unknown	gnl\|CDD\|236896
NZ_CP015064.1\|WP_013529078.1\|5793209_5793731_-\|RNA-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|234820
NZ_CP015064.1\|WP_027163441.1\|5793761_5794940_-\|divergent-polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|225416

Protein	Function_ID	Function_description	E-value
NZ_CP015064.1\|WP_027162554.1\|5791255_5791678_-\|nucleoside-diphosphate-kinase-regulator	gnl\|CDD\|180236	PRK05753, PRK05753, nucleoside diphosphate kinase regulator; Provisional.	6.32003e-47
NZ_CP015064.1\|WP_013529084.1\|5786721_5787165_+\|hypothetical-protein	gnl\|CDD\|153095	cd04706, PLA2_plant, PLA2_plant: Plant-specific sub-family of Phospholipase A2, a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. Enzymatically active PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids; secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis cannot form bilayers leading to a change in membrane conformation and ultimately to a block in the release of neurotransmitters. PLA2 may form dimers or oligomers. This sub-family does not appear to have a conserved active site and metal-binding loop.	7.59246e-35
NZ_CP015064.1\|WP_013529095.1\|5774050_5774779_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	3.88428e-135
NZ_CP015064.1\|WP_024502893.1\|5780205_5781525_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	2.62265e-52
NZ_CP015064.1\|WP_063173264.1\|5774778_5776335_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223488	COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	5.14182e-127
NZ_CP015064.1\|WP_081714251.1\|5790698_5791253_-\|nucleoside-diphosphate-kinase	gnl\|CDD\|180236	PRK05753, PRK05753, nucleoside diphosphate kinase regulator; Provisional.	1.49124e-13
NZ_CP015064.1\|WP_013529092.1\|5777934_5778837_-\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|182689	PRK10740, PRK10740, high-affinity branched-chain amino acid ABC transporter permease LivH.	7.38261e-91
NZ_CP015064.1\|WP_013529085.1\|5785623_5786505_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	4.39701e-39
NZ_CP015064.1\|WP_024502886.1\|5789322_5790579_-\|D-amino-acid-dehydrogenase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	0
NZ_CP015064.1\|WP_063173268.1\|5791952_5793092_-\|alanine-racemase	gnl\|CDD\|223858	COG0787, Alr, Alanine racemase [Cell envelope biogenesis, outer membrane].	3.54308e-143
NZ_CP015064.1\|WP_063173265.1\|5779171_5780173_-\|4-hydroxyproline-epimerase	gnl\|CDD\|184428	PRK13971, PRK13971, 4-hydroxyproline epimerase.	0
NZ_CP015064.1\|WP_063173267.1\|5787161_5789318_+\|phospholipase	gnl\|CDD\|224419	COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism].	8.44239e-36
NZ_CP015064.1\|WP_063173818.1\|5781586_5782480_-\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|223406	COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane].	2.28798e-86
NZ_CP015064.1\|WP_063173266.1\|5782549_5783242_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	3.91906e-32
NZ_CP015064.1\|WP_024502881.1\|5795152_5796484_-\|S41-family-peptidase	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	1.96002e-155
NZ_CP015064.1\|WP_013529093.1\|5776334_5777930_-\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM	gnl\|CDD\|236896	PRK11301, livM, leucine/isoleucine/valine transporter permease subunit; Provisional.	7.45304e-139
NZ_CP015064.1\|WP_013529078.1\|5793209_5793731_-\|RNA-pyrophosphohydrolase	gnl\|CDD\|234820	PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed.	5.83741e-81
NZ_CP015064.1\|WP_027163441.1\|5793761_5794940_-\|divergent-polysaccharide-deacetylase-family-protein	gnl\|CDD\|225416	COG2861, COG2861, Uncharacterized protein conserved in bacteria [Function unknown].	7.48516e-106

>NZ_CP015064.1|WP_024502890.1|5783294_5783594_-|hypothetical-protein
MTRLVATLFFAAVSAFAAVPAMAEQCAARADMIKALGEKFHESEAARGLVNPSVILEIFVSDQGTWTILATDTHGQSCVITAGEGWDGSLMAAAALPGT
>NZ_CP015064.1|WP_063173266.1|5782549_5783242_+|GntR-family-transcriptional-regulator
MIYSRYIRGAHLISTAASTSAEPAATRAYHVLEHMIVTLELAPASFVTEGALIDRLGLGRTPVREAIQRLAWEGLLDIRPRAGIAIAPLHPGDWLRVLDARRGVEVVLARSAARFVTREAADLFHEAALAMQKAVISGNVLAFIQADKALDEALALAADNPFAARLAAPLQTHSRRFWFRYKAETGLAESAEHHVALIRSILAGDEEAAAKDAKRLMALLRGHAETAATR
>NZ_CP015064.1|WP_063173818.1|5781586_5782480_-|dihydrodipicolinate-synthase-family-protein
MWTGVFPAVTTKFTADDRLDHAEMERCFNLQMEAGCDGIIVCGSLGEGPMLSPDEKIEVLKTALKVAGKKPVLLTVNEAGTREAASIAKRASREGANGLMVVPSPIYHTNAEETVAALRAVAQAGDLPVMIYSNRLAYRVDVSVDQMEELASDERFVAIKESSDDIRRSTEIINRLGTRYDLFTGVDNLAFEALSVGAIGWVAGLVTAFPRETVAIYQLMKQGRREEALGIYRWFRPLLDLDVSTYLVQNIKLAEVFAINTNDRVRMPRQPLSGDRRKSVEKIVKDALAVRPTLPQF
>NZ_CP015064.1|WP_024502893.1|5780205_5781525_-|FAD-dependent-oxidoreductase
MQGNSRSTEAGRSPSSALRAPSPRERGEGLDIAIVGGGIIGICAAASLAEAGRRVTVFDRTGICEETSSGNAAAFAFSDVLPLAHKGMMRQLPKWLADPLGPLSIPPAYLPTLLPWLIRFWRAGAPGKYEASLAAQAGMMKLAEAEWMGLLDRSGTRSMLREDGSLELYESEAEFQAGLPGWAARKRFGIGFRHVEGEELAALQPGLSPRFIKGTFVPGWKTVADPKLLGKAVWTYAQAKGARFELVRISQVAADQDGATLTLADGTTRQARHLVVAAGAWSHLLAKQLGDRIPLETERGYNTTLPTSAFDVKRMLIFSGHGFVVTPLETGLRVGGAVELGGIERPPNYARSKALLQKAQKFLPGLDPSGGREWMGFRPSLPDSVPVIGGAPGKRSVVYAFGHGHLGLTQAAATGRLIRDLVLGQTPPIDLAPFSPQRF
>NZ_CP015064.1|WP_063173265.1|5779171_5780173_-|4-hydroxyproline-epimerase
MAKKSFFCIDGHTCGNPVRLVAGGGPLLQGATMMERRAHFLAEYDWIRTGLMFEPRGHDVMSGSILYPPTREDCDIAILFIETSGCLPMCGHGTIGTVTMAIEHGLIKPKTPGVLRLDTPAGLVVAEYKQVGDYVEEVRITNVPSFLYAEGLTVECPGLGEITVDVAYGGNFYAIVEPQENYRDMADHSAGDFIAWSPVVRQRLNEKYSFVHPENPGINRLSHMLWTGAPTVDGADARNAVFYGDKAIDRSPCGTGTSARMAQLHAKGKLKAGDSFVHESIIGSLFKGKVEKDVSVAGKPAIIPSIGGWARMTGLNTIFIDDRDPFAHGFVVK
>NZ_CP015064.1|WP_013529092.1|5777934_5778837_-|branched-chain-amino-acid-ABC-transporter-permease
MQYFVQQLINGLTLGSIYGLIAIGYTMVYGIIGMINFAHGDIFMVGAFTALIVFLALGALFYSVPVVLALLIMMIVAMLLTSLYNWTIEKVAYRPLRGSFRLAPLITAIGMSIALSNFVQVTQGPRNKPIPPMVSQVYNINGISVSLKQIIIVVVTALLLALFWYLVNKTSLGRAQRACEQDRKMAALLGIDVDRTISITFIMGAALAAVAGTLFLMYYGVIAFSDGFTPGVKAFTAAVLGGIGSLPGAVVGGLMIGFIESMWSAYFSIDYKDVAAFSILAIVLIFLPSGILGRPEVEKV
>NZ_CP015064.1|WP_013529093.1|5776334_5777930_-|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM
MAVTVSPERDTVATPMQRALREALYAAAISFGLFVLFIGLKTGQNISNELVLTTRWGLLAAVVIATAVGRFLYVAYGQPFLANQKITDVATGLLPASVASRFFQLPAFIVALVAAVVLFAVNSSLVGWVGAEPAGYLQFLRALSVIYVLACVIYYFRGFIHANFTKLGIAALILYPILVVAILSLMSWSFVGGLQGSLKWVDNFGIQILIYVMLAWGLNIVVGLAGLLDLGYVAFYAVGAYAYALLGTQYGLSFWILLPAAGAMAAFWGVLLGFPVLRLRGDYLAIVTLAFGEIIRLVLINWREVTNGSAGISGIPKVTFFGLMTFNVSDPNYVAKVLHLATSSAYYKIFLYYLILALALLTAFVTIRLRRMPVGRAWEALREDEIACRSLGINTTTTKLTAFATGAMFGGFAGAFFAARQGFVSPESFVFLESAIILAIVVLGGMGSLVGIAVAAMVMIGGTEALRELDFLKQVFGPDFTPELYRMLLFGMAMVIVMLWKPRGFVGSREPTAFLKERKAVSSSFTKEGHG
>NZ_CP015064.1|WP_063173264.1|5774778_5776335_-|ATP-binding-cassette-domain-containing-protein
MNANPVQKAASGMNDAILQVDHLSMKFGGLVAIGDLSFAAKRGEITALIGPNGAGKTTVFNCITGFYKPSEGMITLNRNDGSTFLLERLPNHEIPARAKVARTFQNIRLFSGMTLLENLLVAQHNKLMKASGYTVLGLFGFSGYRKASAESVELAKHWLEKADLVDRADDPAGDLPYGAQRRLEIARAMCTGPELLCLDEPAAGLNPKESAALNELLIDIKNTSGASILLIEHDMSVVMQISDHVVVLEYGRKISDGSPQSVRTDPRVIAAYLGVDDEEVEAVLTEVGDEDVIEQLDTGPDAAHGPGTSSSYLAGPVTDTVGHSSGERVTVAKGASKAGQVDARSLAAANKAASLAAVPPAKAKPAPKATSKAATGTAAKSTASAKPAAKTGEISNRLAAPRGGKADNLTRIKGIGTVNEKKLNDHGIFHFDQIGAWKKADVEAAEAYLAFDGRIAREEWVKQARLLGQGRDTEFSRRVDAGKVATSHASAKTAKAASGKTASKTAAKPVAGKRGGGK
>NZ_CP015064.1|WP_013529095.1|5774050_5774779_-|ABC-transporter-ATP-binding-protein
MAATTLLDIKGVQTYYGNIRALNGVDVTVKQGEIVALIGANGAGKSTLMMTIFGAPRARAGTITFAGTDITQMPTHEIARMRIAQSPEGRRIFPRMTVMENLQMGASLDNLKHYDEDVEKVFTLFPRLKERITQRGGTLSGGEQQMLSIGRALMARPKLLLLDEPSLGLAPLIVKQIFDAIRELNRTQGLTVFLVEQNAFGALKLATRGYVMVNGNVTMSGTGKELLANPEVRAAYLEGGHH
>NZ_CP015064.1|WP_013529096.1|5773591_5773939_-|hypothetical-protein
MQGILYEEPSIWQFFFVTCLLGGWAAWMTGKASAQTWRSFIQLFAYVLGLGIAIRFIHHALFGGTMFSLHYYVVDTIVLMILGFVGYQYTRTNQMVTQYNWLYERASLLSWKPKG
>NZ_CP015064.1|WP_013529085.1|5785623_5786505_+|LysR-family-transcriptional-regulator
MNWDDVRIFLAVARAGQILGAAKRLELNHATVSRRIAALEDALRTKLFRRLTTGSELTPAGERFLDIAERMEGDMIAARSTISGEGDDVSGTVRIGAPDGFGVAFLAKRLGALTALHRELTIQLVPVPRSFSLSRREADIAITVERPTEGRLVAGKLVDYSLGLFASRAYVDANGLPKTAAELGQHTLIGYVPDLIVSPSLDYAAEFSADWRTSFAISSALGQAEAVRSGAGIGILHTFVARSMPELVPVDVVAPIRRAYWLVYHESVRPLRRVQIVASFITKMVERERNLFV
>NZ_CP015064.1|WP_013529084.1|5786721_5787165_+|hypothetical-protein
MRAVLAILPLLFVSACANPWTKVPEAELPKPIRYAMARPSPFVFGNYCGPGTRTGDLSARPADRLDAACQTHDACYIARHNHCDCDGALVASAKAIRDDNATPRKMRGEAELLIATFAIPVCKVFPQGFMPPRDPAQLSALKTGAAG
>NZ_CP015064.1|WP_063173267.1|5787161_5789318_+|phospholipase
MKGRAFIAVVLFGLAVLAGCAGTGRNACDLLQGQSACARPALSAETAGPRIVAAQFFGDAGTSDYEKRFLALLARHQLGAMDRANGTGPFGHDRHEIANSDFQATYRTLQKLAGPVAETHLPPAGANSGEGHFDGRWRVSRQTLYIDAAARPSAPKTFDFSGLQARSVEIVLRQAGKQPADIEGVCDGTLAIRAGGASRTIATGTAFRFRLSGEDDTVSLFPSDGLNRCAARIRSSLAPAGAPLTIRREETADPALAAFDSRYERCPTPDPTGLDPLSRAFYASRWLSQTCALPIGKPRLLRKSRDGFNAKVEALMGAPLSDSAIDKGDPELPLDFSRAPKLKLIYLSSLEFKADFSGRIIERLIRHHAALGTKVRILVTDVLERDKDDAMLHRLATEFPNVGLQEYRWRADRGAPIDEQISQLHKVHHVKMLATLADDPRRSRAIVGGRNIHDGFLFHQPIDLSRYPDLEQYGKTDGFSLNYYSNWSDFDIEFADPATVETLAAHLSTVWLRDADTNLVRPFSIPVRPDGARPSGTARHFISVPYEDGHALEDYFVELVDAAQHHIQIVNPYLNLTPKLAQAVDRALARGVRIDIVGRIDLKGDIGGKFLTALNKLFVEKYGDRINIREFKAPDVVLHSKIMMIDERLVAISSVNLNNRSFFHDSENGMMVLDPAFYTRMKPIYDDYVAHSKPIATNVTIPWAYRLLFDEDWVRQAF
>NZ_CP015064.1|WP_024502886.1|5789322_5790579_-|D-amino-acid-dehydrogenase
MKIMVLGGGVIGVTTAYFLAEAGHEVTVLDRQKGPALETSFANAGEISPGYASPWAGPGIPLKAIKWLLMKHGPLVVRPAFDPHMWTWLIKMLRNCTAERYAINKARMVPLAEYSRDTLKALREATGIAYDERTQGTLQLFRTQKQLDGTGGDVEVLKKYGVPYEILDQDGCIAAEPGLAGVREKFVGGLRLPHDETGDCKMFTDRLAELCVARGVKFEYDVTIWRVIRSRNRIANLSTSKGWKTADAYVMALGSYSAGFMRRVKRPIPVYPVKGYSITVPIKDAAAAPVSTVMDETYKVAITRLGDRIRVGGTAEISGFDLRLHESRRRTLEHSVGDLFPGAGAMRDATFWCGLRPMTPDGPPLIGRTELSNLYLNTGHGTLGWTMACGSGKVLADIISSRVPDIDVRDLAQERYLR
>NZ_CP015064.1|WP_081714251.1|5790698_5791253_-|nucleoside-diphosphate-kinase
METAMTGANFQLTTKDFAVLEIMLERRRAFADPIVPMLEDKLSKAEVVAIDSVGSDIVTLNSRLVFRVDAGPAQTRTLVQNEVRGPVGSSLSIMTRRGLCMLGMAEGQTAWIEQADGRRESVLIATVLYQPEAARRAVREKSQAEARRPHGLTLVYSAAADWRPLGERAGMRQTGDDDPGPAAA
>NZ_CP015064.1|WP_027162554.1|5791255_5791678_-|nucleoside-diphosphate-kinase-regulator
MQHATGLRPPSRLLVTDADHHRLTGLARASLDRVPETAEELLSEMDRAVVTAAASMPANVVRMGSAVTIRNDGGNIQRVTLVYPGEADISENRISVLTPMGTALIGATAGQTVCWSSRGGRELSATIEVVDTPACGREGA
>NZ_CP015064.1|WP_063173268.1|5791952_5793092_-|alanine-racemase
MNDALQKSPPEEVTATSEVAAGAILTIDLGAIRENYRRLKARLGDVACAGVLKADGYGLGAGQVGAALLREGCDIFFVALLGEGVALRRSLGAGPAIFVLNGIPPGAETDAVAANLCAVINSPEQLAAWRSAARRAGRKLPAAVQVDSGMSRLGMAPRDVERIAADPQAFDGIDIRYVMSHLACADEPEHPANELQRLAFEQLRKMLPAAPASLTNSSGIFLGPSFHYDLARPGAALYGINPTPPKSNPMLPVVRLQAKVAQTRSVEKGAGVGYGHSYHAQGPLRLATISFGYADGWQRRAASAAWFEGVRLPFVGRVSMDSIILDISALPAGRLREGDLVELLGPSQSVDDAAGHAGTIGYEILTSLGPRFHRRYVGG
>NZ_CP015064.1|WP_013529078.1|5793209_5793731_-|RNA-pyrophosphohydrolase
MPKTNKIDRETLPYRPCVGLMILNAEGLVWVGHRIAEPDSEFAGTTQLWQMPQGGIDEGEEPLQAAERELYEETGMRGVSLLAEAPDWINYDLPEHLVGIAFKGRYRGQTQKWFAFRFHGDVSEIQINPPPGGHTAEFDKWAWRPMQDLPDLIVPFKRHVYEDVVAAFRHLVR
>NZ_CP015064.1|WP_027163441.1|5793761_5794940_-|divergent-polysaccharide-deacetylase-family-protein
MTDIGKDIERPLGQAVRPPRAAGKLSGGAIMATVAVLVVAGISGAIALREKPFRKPQEVAVSTPKVTAAAEPAAAPPALAPAAPKPEAPVKSGGPQIIHVQTEEGDGPPKAAIVIRDPSTVGQNLKIAHIPDKALIEASETGPLPVRAADGRRPFDVYARPWSGGRGARVAIVIGGLSVSQTGTQAAIAKLPAEVTLAFAPQGNSIGRWMQAARQSGHEIVMQVPLEPFDYPKVNPGRNTLTVAASADENLKSLHWALSRTTNYTGVMNYMGARFSADAAAMEPFIAELGKRGLAYIDDGSSSRSLAPDLALKDGVPFVAGDMAIDAVQDRGEILKKLDSLEATARAKGTAVGIGSAFDLTVDTVSSWVVEAKKRGIEIVPISAVAIDPQKG
>NZ_CP015064.1|WP_024502881.1|5795152_5796484_-|S41-family-peptidase
MMRKLSLLFAGALMGASAMSLVYGAPGSAANAAGSETYKQLAIFGDIFERVRAQYVTPPDDKSLVENAINGMLASLDPHSSYMNAEQAQDMRVQTKGEFGGLGIEVTMENDLVKVITPIDDTPAAKAGVLAGDYIAKIDGEEVRGLTLNDAVDKMRGLVNTPIKLTILRQGADKPIELTVVRDIIKVKAVKFRVENDIGYMKITSFTEKTYDDLENAIDTIKKQIPDDKLKGYVLDLRLNPGGLLDQAVSVSDAFLNRGEIVSTRGRDPKDVTRFDAKPKQVDDINGKPMIVLVNGGSASASEIVAGALQDLRRVTVVGTQSFGKGSVQTIIPLGENGALRLTTALYYTPSGKSIQGKGITPDIKVEQPLPPELQGRDLTRGESDLKGHIKGADESTTGSGSAAYVPPDPKDDLQLIYAEQLLRGQKTDPSFPPNPQKAVLNQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP015064_1	1.1\|1739225\|29\|NZ_CP015064\|CRISPRCasFinder	1739225-1739253	29	NZ_CP034911	Ensifer alkalisoli strain YIC4027 plasmid unnamed, complete sequence	232073-232101	8	0.724

1. spacer 1.1|1739225|29|NZ_CP015064|CRISPRCasFinder matches to NZ_CP034911 (Ensifer alkalisoli strain YIC4027 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.724

cacagcccgcaattgcggcgatatccgaa	CRISPR spacer
gccagccggcatttgcggcgatatcgccg	Protospacer
  ***** *** *************   .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP015065

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP015064

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection