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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP014786 Lactobacillus reuteri strain ZLR003 chromosome, complete genome 3 crisprs cas14j,DinG,DEDDh,RT,cas3,csa3 0 2 17 0

Results visualization

1. NZ_CP014786
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014786_1 928700-929106 Orphan NA
7 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014786_2 1885524-1885880 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014786_3 2208883-2208998 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP014786_2 2.5|1885734|27|NZ_CP014786|PILER-CR 1885734-1885760 27 MK448831 Streptococcus phage Javan83, complete genome 18431-18457 4 0.852
NZ_CP014786_2 2.5|1885734|27|NZ_CP014786|PILER-CR 1885734-1885760 27 MT900488 Streptococcus phage SA01, complete genome 17964-17990 4 0.852
NZ_CP014786_2 2.5|1885734|27|NZ_CP014786|PILER-CR 1885734-1885760 27 MK449006 Streptococcus phage Javan78, complete genome 18431-18457 4 0.852
NZ_CP014786_2 2.5|1885734|27|NZ_CP014786|PILER-CR 1885734-1885760 27 MK448671 Streptococcus phage Javan115, complete genome 17403-17429 5 0.815
NZ_CP014786_1 1.2|928765|34|NZ_CP014786|CRISPRCasFinder 928765-928798 34 NZ_CP039697 Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence 133936-133969 10 0.706

1. spacer 2.5|1885734|27|NZ_CP014786|PILER-CR matches to MK448831 (Streptococcus phage Javan83, complete genome) position: , mismatch: 4, identity: 0.852

agagggattgatacactccaatcatta	CRISPR spacer
acaatgattgatacattccaatcatta	Protospacer
* *. **********.***********

2. spacer 2.5|1885734|27|NZ_CP014786|PILER-CR matches to MT900488 (Streptococcus phage SA01, complete genome) position: , mismatch: 4, identity: 0.852

agagggattgatacactccaatcatta	CRISPR spacer
acaatgattgatacattccaatcatta	Protospacer
* *. **********.***********

3. spacer 2.5|1885734|27|NZ_CP014786|PILER-CR matches to MK449006 (Streptococcus phage Javan78, complete genome) position: , mismatch: 4, identity: 0.852

agagggattgatacactccaatcatta	CRISPR spacer
acaatgattgatacattccaatcatta	Protospacer
* *. **********.***********

4. spacer 2.5|1885734|27|NZ_CP014786|PILER-CR matches to MK448671 (Streptococcus phage Javan115, complete genome) position: , mismatch: 5, identity: 0.815

agagggattgatacactccaatcatta	CRISPR spacer
acaatgattgatacattccaatcattg	Protospacer
* *. **********.**********.

5. spacer 1.2|928765|34|NZ_CP014786|CRISPRCasFinder matches to NZ_CP039697 (Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence) position: , mismatch: 10, identity: 0.706

ggtatcagtgcccttgttgccgttgtctggcttt	CRISPR spacer
gtgatcggtgcccttgttgccgttttcgcgaaag	Protospacer
*  ***.***************** **  *    

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 9642 : 73200 51 Catovirus(20.0%) transposase NA
DBSCAN-SWA_2 85316 : 143845 55 unidentified_phage(44.44%) integrase,transposase attL 93809:93868|attR 149680:149855
DBSCAN-SWA_3 249148 : 256320 8 Staphylococcus_phage(57.14%) transposase NA
DBSCAN-SWA_4 304847 : 312912 8 Staphylococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_5 323343 : 433267 111 Lactobacillus_phage(47.62%) portal,transposase,integrase,capsid,tRNA,head,plate,terminase,tail,holin,protease attL 315315:315330|attR 423139:423153
DBSCAN-SWA_6 513709 : 568738 50 Acinetobacter_phage(14.29%) tRNA,transposase NA
DBSCAN-SWA_7 652403 : 719393 59 unidentified_phage(18.75%) integrase,transposase attL 701234:701248|attR 722308:722322
DBSCAN-SWA_8 876434 : 948889 58 Bacillus_virus(20.0%) tRNA,transposase,protease NA
DBSCAN-SWA_9 1005090 : 1298382 236 Bacillus_phage(15.94%) tRNA,integrase,transposase,protease attL 1048794:1048813|attR 1068685:1068704
DBSCAN-SWA_10 1305984 : 1435001 107 unidentified_phage(16.67%) tRNA,transposase NA
DBSCAN-SWA_11 1513371 : 1576283 59 Streptococcus_phage(17.65%) tRNA,transposase NA
DBSCAN-SWA_12 1614128 : 1660942 35 Planktothrix_phage(20.0%) transposase NA
DBSCAN-SWA_13 1687936 : 1747414 52 Lactobacillus_phage(18.18%) integrase,transposase,protease attL 1719240:1719261|attR 1725499:1725520
DBSCAN-SWA_14 1764616 : 1814881 46 Bacillus_phage(14.29%) tRNA,transposase NA
DBSCAN-SWA_15 1858428 : 1868704 8 Escherichia_phage(42.86%) transposase NA
DBSCAN-SWA_16 2003039 : 2092348 85 unidentified_phage(26.09%) tRNA,integrase,transposase attL 2053739:2053758|attR 2082893:2082912
DBSCAN-SWA_17 2098757 : 2148186 50 unidentified_phage(22.22%) tRNA,transposase,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage