CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015117	Pseudomonas aeruginosa strain ATCC 27853, complete genome	5 crisprs	DEDDh,PD-DExK,RT,WYL,DinG,csa3,cas3	0	1	7	3

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015117_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015117_1

2036347-2036509

Orphan

Consensus_repeat	Method
CCCTACGGACCGGCGCTCCGCTGGCCCAACGTGGTGTAGGGCGAATAACCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015117_1

>merge|NZ_CP015117|1|2036347-2036509|CRISPRCasFinder
CCCTACGGACCGGCGCTCCGCTGGCCCAACGTGGTGTAGGGCGAATAACCGCCACGCGGTTATCCGCCATTTCAGACGCCTCACGGCGAATAACGCCTGGGGCGTTATCCACCCTACGGACCGGCGCTCCGCTGGCCCAACCTGGTGTAGGGCGAATAACCGC

>NZ_CP015117|1|1|2036347-2036509|CRISPRCasFinder
CCCTACGGACCGGCGCTCCGCTGGCCCAACGTGGTGTAGGGCGAATAACCGC	CACGCGGTTATCCGCCATTTCAGACGCCTCACGGCGAATAACGCCTGGGGCGTTATCCA
CCCTACGGACCGGCGCTCCGCTGGCCCAACCTGGTGTAGGGCGAATAACCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015117.1\|WP_003120854.1\|2026438_2028010_+\|DUF4129-domain-containing-protein	unknown	unknown	gnl\|CDD\|379261
NZ_CP015117.1\|WP_016852098.1\|2032034_2032391_-\|DUF4124-domain-containing-protein	unknown	unknown	gnl\|CDD\|379230
NZ_CP015117.1\|WP_003101151.1\|2038365_2039493_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP015117.1\|WP_003112780.1\|2029274_2030282_+\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP015117.1\|WP_003120863.1\|2045890_2046970_-\|phosphatidylserine/phosphatidylglycerophosphate/-cardiolipin-synthase-family-protein	unknown	unknown	gnl\|CDD\|224419
NZ_CP015117.1\|WP_003101146.1\|2042782_2043091_-\|ribbon-helix-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|226771
NZ_CP015117.1\|WP_003093898.1\|2031614_2031974_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274060
NZ_CP015117.1\|WP_003120861.1\|2043111_2043696_-\|DJ-1/PfpI-family-protein	unknown	unknown	gnl\|CDD\|153243
NZ_CP015117.1\|WP_003120855.1\|2032491_2032875_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015117.1\|WP_003093930.1\|2034856_2036308_+\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235619
NZ_CP015117.1\|WP_003112779.1\|2030278_2031610_+\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NZ_CP015117.1\|WP_003101153.1\|2037446_2038373_-\|iron-sulfur-binding-ferredoxin-reductase	unknown	unknown	gnl\|CDD\|235575
NZ_CP015117.1\|WP_003101143.1\|2043799_2044411_-\|DUF2846-domain-containing-protein	unknown	unknown	gnl\|CDD\|378537
NZ_CP015117.1\|WP_003455444.1\|2032968_2033775_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274513
NZ_CP015117.1\|WP_003101155.1\|2036608_2037382_-\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|235852
NZ_CP015117.1\|WP_003101165.1\|2028006_2029278_+\|DUF4350-domain-containing-protein	unknown	unknown	gnl\|CDD\|379527
NZ_CP015117.1\|WP_073653404.1\|2041390_2042698_-\|divalent-metal-cation-transporter	unknown	unknown	gnl\|CDD\|234815
NZ_CP015117.1\|WP_016852099.1\|2044504_2045791_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_CP015117.1\|WP_003120856.1\|2033859_2034774_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|236871
NZ_CP015117.1\|WP_003116189.1\|2039770_2041294_+\|fumarate-hydratase	unknown	unknown	gnl\|CDD\|224862

Protein	Function_ID	Function_description	E-value
NZ_CP015117.1\|WP_003120854.1\|2026438_2028010_+\|DUF4129-domain-containing-protein	gnl\|CDD\|379261	pfam13559, DUF4129, Domain of unknown function (DUF4129). This presumed domain is found at the C-terminus of proteins that contain a transglutaminase core domain. The function of this domain is unknown. The domain has a conserved TXXE motif.	0.00173262
NZ_CP015117.1\|WP_016852098.1\|2032034_2032391_-\|DUF4124-domain-containing-protein	gnl\|CDD\|379230	pfam13511, DUF4124, Domain of unknown function (DUF4124). This presumed domain is found in a variety of bacterial proteins. It is found associated at the N-terminus associated with other domains such as the SLT domain and glutaredoxin domains in some proteins. The function of this domain is unknown, but it may have an Ig-like fold.	5.5104e-11
NZ_CP015117.1\|WP_003101151.1\|2038365_2039493_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.30352e-61
NZ_CP015117.1\|WP_003112780.1\|2029274_2030282_+\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	1.85211e-99
NZ_CP015117.1\|WP_003120863.1\|2045890_2046970_-\|phosphatidylserine/phosphatidylglycerophosphate/-cardiolipin-synthase-family-protein	gnl\|CDD\|224419	COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism].	8.25583e-83
NZ_CP015117.1\|WP_003101146.1\|2042782_2043091_-\|ribbon-helix-helix-domain-containing-protein	gnl\|CDD\|226771	COG4321, COG4321, Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis [General function prediction only].	6.44728e-40
NZ_CP015117.1\|WP_003093898.1\|2031614_2031974_-\|hypothetical-protein	gnl\|CDD\|274060	TIGR02266, gmx_TIGR02266, Myxococcus xanthus paralogous domain TIGR02266. This domain is related to Type IV pilus assembly protein PilZ (pfam07238). It is found in at least 12 copies in Myxococcus xanthus DK 1622.	0.00176063
NZ_CP015117.1\|WP_003120861.1\|2043111_2043696_-\|DJ-1/PfpI-family-protein	gnl\|CDD\|153243	cd03169, GATase1_PfpI_1, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.	3.72461e-111
NZ_CP015117.1\|WP_003093930.1\|2034856_2036308_+\|pyruvate-kinase	gnl\|CDD\|235619	PRK05826, PRK05826, pyruvate kinase; Provisional.	0
NZ_CP015117.1\|WP_003112779.1\|2030278_2031610_+\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	1.10209e-86
NZ_CP015117.1\|WP_003101153.1\|2037446_2038373_-\|iron-sulfur-binding-ferredoxin-reductase	gnl\|CDD\|235575	PRK05713, PRK05713, iron-sulfur-binding ferredoxin reductase.	0
NZ_CP015117.1\|WP_003101143.1\|2043799_2044411_-\|DUF2846-domain-containing-protein	gnl\|CDD\|378537	pfam11008, DUF2846, Protein of unknown function (DUF2846). Some members in this family of proteins with unknown function are annotated as lipoproteins however this cannot be confirmed.	1.20717e-26
NZ_CP015117.1\|WP_003455444.1\|2032968_2033775_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|274513	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking].	1.96341e-05
NZ_CP015117.1\|WP_003101155.1\|2036608_2037382_-\|enoyl-CoA-hydratase	gnl\|CDD\|235852	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.	2.79206e-90
NZ_CP015117.1\|WP_003101165.1\|2028006_2029278_+\|DUF4350-domain-containing-protein	gnl\|CDD\|379527	pfam14258, DUF4350, Domain of unknown function (DUF4350). This domain family is found in bacteria, archaea and eukaryotes, and is approximately 70 amino acids in length.	1.67666e-10
NZ_CP015117.1\|WP_073653404.1\|2041390_2042698_-\|divalent-metal-cation-transporter	gnl\|CDD\|234815	PRK00701, PRK00701, divalent metal cation transporter MntH.	0
NZ_CP015117.1\|WP_016852099.1\|2044504_2045791_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	3.3436e-33
NZ_CP015117.1\|WP_003120856.1\|2033859_2034774_+\|universal-stress-protein	gnl\|CDD\|236871	PRK11175, PRK11175, universal stress protein UspE; Provisional.	6.18568e-41
NZ_CP015117.1\|WP_003116189.1\|2039770_2041294_+\|fumarate-hydratase	gnl\|CDD\|224862	COG1951, TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion].	1.05118e-147

>NZ_CP015117.1|WP_003093930.1|2034856_2036308_+|pyruvate-kinase
MSVRRTKIVATLGPASNSPEVLEQLILAGIDVARLNFSHGTPDEHRARARLVRELAAKHGRFVALLGDLQGPKIRIAKFANKRIELQVGDKFRFSTSHARDAGTQEVVGIDYPDLVKDCGVGDELLLDDGRVVMVVEEVAADELRCRVLIGGPLSDHKGINRRGGGLTAPALTDKDKADIKLAADMDLDYVAVSFPRDAKDMEYARRLLTEAGGKAWLVAKIERAEAVADDDALDGLIRASDAVMVARGDLGVEIGDAELVGIQKKIILHARRNNKVVITATQMMESMIHSPMPTRAEVSDVANAVLDYTDAVMLSAESAAGEYPVEAVKAMARVCQGAEKHPTSQKSSHRLGQTFDRCDESIALASMYTANHFPGIKAIICLTESGFTPLIMSRIRSSVPIYAYSPHRETQARVAMFRGVETIPFDPAALPAEKVSQAAVDELLKRGVVTKGDWVILTKGDSYTAQGGTNTMKVLHVGDLLV
>NZ_CP015117.1|WP_003120856.1|2033859_2034774_+|universal-stress-protein
MNLHNLLVVVDPSSDEQPALSRAQWIAERSGASVELLLCDFNPALDGGLFFDSHSLQRARDLYLDERVTWLEQLSMPLQQAGIRTQVEAQWGKPLDRMVLQRVGETRPDLVLKSTRKHNLLRRLLLGNSDWQLIRHCPQPLWLVHHDAWRGQRLCAALDPLHASDKPAALDHRLIAAARQLEASLGLRADYLHTHAAMPRSLLFDAEMLAGYERFVLQHEERHRQAFDDLLAAYPEIAAERRHLLAGYAEQAIPDFVRANDIDLLLMGAVARGHLDNALIGQTAERVLEEVECDLLVLKPTNDI
>NZ_CP015117.1|WP_003455444.1|2032968_2033775_+|tetratricopeptide-repeat-protein
MRFARRLVLLPLLSLLAACSPTTPLFVAQVTTGEVAEYKQMKSNRMTAAIEEEGDLLTYSAMAIRDNRSAEAEKLYLTGYDNSRYSAEVRGISLYQIGLIYMSRYNDQRDDAKATDYFQRVVREFPGTHAAEHAQARLLAMRQRAREPVQKSARELLATWKPQQNLDLYKTSLDPDMTLLSRRAVLKDRVDEAAELYLLAVNDPAIPAGIKEKALYQLGLMYLAPDNPHPNRDKAIEYLRRQLLDYPEGELSNKAGRHLDQALNVQPR
>NZ_CP015117.1|WP_003120855.1|2032491_2032875_-|hypothetical-protein
MPMRSLIVACLALSATGCNSWSLNSDLNGAYRAYDKGDCAQVMLDLSRAERRIRARPYLQPEISLLRGQCLERQSLFVDAAQTYHFIIARYPTSEYAYRAKARLETLRQLGRLSETPASASAVPTRL
>NZ_CP015117.1|WP_016852098.1|2032034_2032391_-|DUF4124-domain-containing-protein
MRALWFCVALMPVLAQADIYRWTDAQGKVHFSATPPAGAQRVEVRPQVVERTAAAERAGQRQAALAEECGRLRQQLSQLERGGRFYRQDAGGGPVYLSDAELDAIRRELASRESERCR
>NZ_CP015117.1|WP_003093898.1|2031614_2031974_-|hypothetical-protein
MGLQRHIQRHQLPSYLKVFNRITDKPMGYIGNVSEDGLLLISQLPMLVGARFELRLKVPGLGGRPQCIDFSADCRWTCEDVTPGHFDSGFHLLAPPAEFLELVEALRRYFSFPRQPQSV
>NZ_CP015117.1|WP_003112779.1|2030278_2031610_+|DUF58-domain-containing-protein
MKPSRALLALFAALLLLAIGLGSLSALGQRLPAQLHTFWWAALAALLLLGLLDALWARRQAVPKLSRQLSGNLPLGRWSEVRLHLQHTYRRPVRLTLFDHLPAGMDFEYLPQEVELRPGESTEVGYRVRPLNRGHFVFPRCELELPSPLRLWRQRRYLEARGETRVYPDFARLYGAELMAVDHWLNQIGVRGGQRRGLGLEFHQLREFRDGDTLRQIDWKATARKRTPIAREYQDERDQQILFLLDCGRRMRSQDGDLSHFDHALNASLLLAYVALRQGDAVGAMTFAGDDRRHLPPGKGSAQLGALLNTVYDLQTSQRPADFPEAVQAVLSRQRRRALVILVTNLRDEDDEELLGAVKRLGRQHRVLVASLREEVLDTLRHEPVARYEQALAYTGTIDYLNARNGLHEKLAAHGVPVLDARPSELGPELISRYLGWKRAGVL
>NZ_CP015117.1|WP_003112780.1|2029274_2030282_+|MoxR-family-ATPase
MSEQTPEQPSTAPNPALQRQRASQLAQALRTELQKALIGQGAVIDDVLTALLAGGHVLVEGVPGLGKTLLVRALARCFDGGFARIQFTPDLMPSDVTGHAVYDLASEQFKLRKGPVFTHLLLADEINRAPAKTQAALLEVMQERQVTLEGRALPVPQPFMVLATQNPIEQEGTYPLPEAELDRFMLKLRIDYPAEAEEQTLVRQVTRSARSDMLDVANLRPLLKDKDVLALQRIASDLPIDDQVLDYAVRLARTTRNWPGLALGAGPRASIALVRCGRARALLRGGEFVVPDDIKGCALAVLRHRVRLSPELDIEGLSVDQVLQQLLDQVPAPRV
>NZ_CP015117.1|WP_003101165.1|2028006_2029278_+|DUF4350-domain-containing-protein
MMSRRARFLLLAVLLLLAGLLAIFLASRLQPYTETIDLGPSPEARRNPYLAAELFLRKQGVTVSRADGLEVLKELPPSGHTLLLLGSRSGMTPGQARRLLQWSEQGGHLVLIAERLWDEDEKKSGDLLLDSLDIRQYLTEDFDDSQDRASEETADADADEGSVDDHATEAPPEEAAGEEEEPADSVPDYSALTRLYLENERSPAYIGFDPDYHLYDPQNHAYAWANSGDATHLLQMQHGKGLVTVLTDAWIWQNRNIEQYDNAWLLWYLTQDNQVTLLYRAERDSLATLLARHFPEALAAALLLLLAGLWRAGLRQGPLQPVASRSRRQLEEHLRAGADFLLRQRGHVALLHGLQRDILRRARRRHPGFEQLGVAEQWQILGRMTRLPPSAISQAMRPYPAQRLSAADFTRQVAHLQSLRNAL
>NZ_CP015117.1|WP_003120854.1|2026438_2028010_+|DUF4129-domain-containing-protein
MRLTDASVAIRPRSAWEALDLGILLAHRHARLLMGSWALLTLPLFAVLSLLLWQHPTLAILIFWWLKPAFERLPLYILSHALFGDTPTLRQALRAYPALLRKQLPASLLWRRFSPTRSFDLPVLQLEGLAGEPRSQRLIVLSQRNAGGATWLTVVGVHLEMALWAGFAMLLYLLIPAQNEIDWNWQSLLDPEAGEWLWLEHLSNLLYVLVLVVWEPIYVACGFTLYLNRRTELEAWDIELVFRRLRQRLVGSAYVLLLGLTASLAWLPAPSAYAEPAAATSAGEAELPPEQARLLRQKLNSEQAGKQIRAIVDGAPFKNSETVTGWRFGDKTEKKDSRKEDEERLKAFFEALANWVPFRHAAQVIEVLLWALLFSAVFLLVWRYREWLRLFVGNLGLPQRARREAPTVMFGLDLSPESLPDDIAGNAERLWNEKPREALGLLYRGLLSRLLHDYRLPLKGSHTEGEVLRLVEGLEQQRPLLHYSQLLTAQWQALAYGHRLPADDARQRLCDGWRSLFAAGAKP
>NZ_CP015117.1|WP_003101155.1|2036608_2037382_-|enoyl-CoA-hydratase
MSELIRVEREAGLLTLRLDRQDKKNALTRAMYSRMAEALLEAQADTAVRVVLITGGDACFTSGNDILDFLEQPPSLRDSPVGRFMSALLEFPKPVIAAVNGPAVGIGTTLLLHCDLVFVGRNARLKMPFVNLGLTPEFGSSLILPRMLGHARAAELLMLGQDFSGEQAAAWGLANAALEDGATVLEHARDAARRFLHLAPSAVVESKRLMKAPFIEELRRVIAEEGDIFSTRLRSPEAIEALSAFMHRRQPDFSRFA
>NZ_CP015117.1|WP_003101153.1|2037446_2038373_-|iron-sulfur-binding-ferredoxin-reductase
MPDIRVGERRLAVAAGSNLLDALLAGGIAVPHSCRAGSCHACLVHCLQGEVDDTLPEALDPARREAGWRLACQCRVLGDLVLQPFDPERDGLPARVVACHWLGDVLRLRLEPERPLRYRAGQHLLLWSDDGVARPYSLASLPHEDPWLEFHIDCSAPGAFCDRARRLAPGALLRLGELRGGALRYEPDWQERPLLLMAAGTGLAPLWGILREALRAEHQAPIQLLHLARDHYLASELAELAGRHPQVRVNLVSAAQLPSALADLRLVPRRSMALLCGQPASVERFARHLYLAGVPRSQTLADLFLPHA
>NZ_CP015117.1|WP_003101151.1|2038365_2039493_-|GGDEF-domain-containing-protein
MRTDKPPLKQRALQKLLLRRFGMAAGTYLLGLVLLWLALLSGFYRAAPTTAAASTTLVVACQLAFLWLFASGRNLRYADPSLTEPQVLVAIAWLTYFLYHVDSLRGTFMVFYVLALLFGVFQLPPRVFARCAALAFIAFSGIYLVEALQQRLELPGRAALQVLVMFIVMVWLSLFASYIQAMRQRMRQRRYALQAHQDTLRGMMRQLEDLVATDELTGLFNRRHFMRMASRALEDLLPNRQHGLALIDLDHFKRINDRHGHAAGDRVLQTFAAVARSCLRDGDVLARYGGEEFVLLLPHADAEQLESCCERLRLAFQQAEPVGVTVDTLSLSVGMTLLYADDDLDEALQRADQALYRAKRGGRNRCDATWEVTSA
>NZ_CP015117.1|WP_003116189.1|2039770_2041294_+|fumarate-hydratase
MAVIKQDDLIQSVADALQFISYYHPVDFIQAMHEAYLREESPAARDSMAQILINSRMCATGHRPICQDTGIVTVFVRVGMDVRWDGATMSVDDMINEGVRRAYNLPENVLRASILADPAGARKNTKDNTPAVIHYSIVPGDKVEVDVAAKGGGSENKSKMAMLNPSDSIVDWVLKTVPTMGAGWCPPGMLGIGIGGTAEKAAVMAKEVLMDPIDIHELKARGPQNRIEELRLELFEKVNQLGIGAQGLGGLTTVLDVKIMDYPTHAASLPVCMIPNCAATRHAHFVLDGSGPAELEAPSLDAYPEIVWEAGPSARRVDLDKITPEEVQSWKPGETLLLNGKMLTGRDAAHKRMVDMLNKGETLPVDLKGRFIYYVGPVDPVGDEVVGPAGPTTATRMDKFTRQILEQTGLLGMIGKSERGPIAIEAIKDNKAVYLMAVGGAAYLVAQAIKKSKVLAFAELGMEAIYEFEVKDMPVTVAVDTNGESVHITGPAVWQKKIAESLAIEVK
>NZ_CP015117.1|WP_073653404.1|2041390_2042698_-|divalent-metal-cation-transporter
MPTTATAPFCPSAVSHSVAVPADASPLRKLALFIGPGLLVSVGYMDPGNWATAIEAGSRFGYALLFVVVLASFSGMLLQSLCSRLGIATGRDLAQLSRERYRPGVARGQWLLAELSIVATDLAEVLGAALAFHLLLGVSITTGVVLTAFDTLIVLALQGANFRRLEAIVLGLIATIGACFFVELVLIGPYWPDVAAGLRPSWDTLSSQEPLYLAIGILGATVMPHNLYLHSSVVQTRVSGDDAASKRSAIRFSRLDTIGSLSLALLVNAAILILAAAAFHGSGHTEVVEIQDAYHLLDPLVGGALASFLFGFALLAAGQSSTFTGTIAGQVVMEGFLRAKIPCWQRRLITRGLALVPALIGVLWLGEAAVGKLLVLSQVVLSLQLPFALWPLIRFSSDRGLMGEFVNPRWVSALAWSLFGLISAANLTLLYFWFG
>NZ_CP015117.1|WP_003101146.1|2042782_2043091_-|ribbon-helix-helix-domain-containing-protein
MCELYVKADPILYESRSRSLRIRGVVTTLRLENQFWDILREIAEGEGLSTNQLITNLYEEVMDYRGEVLNFASFLRVSCTRYLAQRREKVAELSLVGQRAQA
>NZ_CP015117.1|WP_003120861.1|2043111_2043696_-|DJ-1/PfpI-family-protein
MMAAKKILMLVGDYAEDYETMVPFQALQMVGHQVHAVCPDKRAGQSVRTAIHDFEGDQTYSEKPGHNFTLNADFAQARAEDYDALLIPGGRAPEYLRLNEQVLALVRDFDAARKPIAAVCHGAQLLAAAGVLQGRACSAYPACAPEVRLAGGEYVDLPPDQAHVDGHLVTAPAWPAHPAWLARFLEALGTRISH
>NZ_CP015117.1|WP_003101143.1|2043799_2044411_-|DUF2846-domain-containing-protein
MLRSLSLALSIVASLVGCSTPGAFFGAVDGPAFVAHPSADASHATVYLYRPRSQWADEELEAPGIFLNNELIGSLPSNGYLAFEFETGSYKLEMRRPLAGSFWTLFADGPMDFTRIASFMLEARAGSVYYLRYDELNPPPKSEHPAGEGDGPLQLVAADLGAAEIGATHQVQEPMQFAASGYRKRVQRSFWEGVGRALDKIGI
>NZ_CP015117.1|WP_016852099.1|2044504_2045791_-|acyltransferase
MATPDSKERFIGLEWLRFLLGLYVVVYHTLHTYPKEQKFPGLDELTSLGFFATSTFFVLSGFLLAHVYARSGRLRESARSFWTKRLSNLYPLHLFSLLLSILVLLALSHLGIGPELDKATPRFVIYDTNEVLGRTHPELFLHWMSNTELFVNSILQILLLQAWNPYYLTFNAPLWSLSTLMFFYLAFPFVAPRLMRSRHKWKVLALVWLVYLIPPALVVASESYGIPWTGLLHRNPLLRLPEFLGGILAYGLFRGYRDRGMVPGRGLLAALVALVVAAFLVADYLFTQGAKHWYFLLHNGLLLPAQLLLVCLCALPADPKSAFVRHWSPRLGAASLSLFALHVPMFTLFSRSERLIAVPGRCLDDWRACTEAAAALPSSLLYYPLFLVLLVAFCVLFQERGVVPVRKWLVRRLMPAPAPALAKVPRPA
>NZ_CP015117.1|WP_003120863.1|2045890_2046970_-|phosphatidylserine/phosphatidylglycerophosphate/-cardiolipin-synthase-family-protein
MLLAIEAAQRSIELELYLVEDGHCAELFLVALLDARRRGVAVRCLFDGFGCLGLGSAWIQRLREAGGELRLYNPLRWKLTGGNLYRDHRKLLLVDGRLGYVGGAGITDEFWEPVSDVSAWREVMVEMDGPVVADWAALFERQWLACLEEKAWKPREGMTLTRLPPQPGAARGLGRVAYADARQHRDILQSLVRALNGSRRRIWLATPYFLPTWKVRRALRKAAQRGVEVRLLLAGRLTDHAPVRYAGQRYYPRLLRAGVRIHEYQPRFLHLKMVMVDDWVSVGSCNFDHWNLRFNLDANLEALDPDFTNEAAASLLADFADSREVTLAMWRARPLWMRLHQRLWGWLDRVVVNFLDRRR

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Crispr_ID: NZ_CP015117_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015117_2

2787913-2788007

Orphan

Consensus_repeat	Method
GCCGACAACGGCAGCGAGCAGACCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015117_2

>merge|NZ_CP015117|2|2787913-2788007|CRISPRCasFinder
GCCGACAACGGCAGCGAGCAGACCGTCGACCGCCTGCACAAGGACATGACCAAGGCCGAAGCCCGCCTGGCCGACAACGGCAGCGAACAGACCGT

>NZ_CP015117|2|2|2787913-2788007|CRISPRCasFinder
GCCGACAACGGCAGCGAGCAGACCGT	CGACCGCCTGCACAAGGACATGACCAAGGCCGAAGCCCGCCTG
GCCGACAACGGCAGCGAACAGACCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015117.1\|WP_016852187.1\|2793948_2795061_-\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|225779
NZ_CP015117.1\|WP_016852186.1\|2788169_2788937_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239026
NZ_CP015117.1\|WP_003121124.1\|2778437_2779052_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015117.1\|WP_003107570.1\|2796316_2796946_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236881
NZ_CP015117.1\|WP_003095515.1\|2790362_2791052_+\|heavy-metal-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|130454
NZ_CP015117.1\|WP_003116116.1\|2789601_2790225_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015117.1\|WP_003095503.1\|2786974_2787508_+\|bacterioferritin	unknown	unknown	gnl\|CDD\|225104
NZ_CP015117.1\|WP_003095496.1\|2783795_2784608_+\|c-di-GMP-binding-multidrug-transporter-transcriptional-regulator-BrlR	unknown	unknown	gnl\|CDD\|226231
NZ_CP015117.1\|WP_003121125.1\|2779143_2780007_-\|oxaloacetate-decarboxylase	unknown	unknown	gnl\|CDD\|225311
NZ_CP015117.1\|WP_003095526.1\|2797175_2797679_+\|urease-accessory-protein-UreE	unknown	unknown	gnl\|CDD\|237322
NZ_CP015117.1\|WP_003095519.1\|2792412_2793729_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341030
NZ_CP015117.1\|WP_003161310.1\|2788933_2789548_-\|cytochrome-b/b6-domain-containing-protein	unknown	unknown	gnl\|CDD\|226602
NZ_CP015117.1\|WP_003095488.1\|2782853_2783198_+\|osmotically-inducible-lipoprotein-OsmE	unknown	unknown	gnl\|CDD\|183058
NZ_CP015117.1\|WP_003099516.1\|2791030_2792422_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|273593
NZ_CP015117.1\|WP_003095476.1\|2780214_2781480_+\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|212673
NZ_CP015117.1\|WP_003095492.1\|2783241_2783649_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377850
NZ_CP015117.1\|WP_003095479.1\|2781654_2782071_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183165
NZ_CP015117.1\|WP_016852188.1\|2795057_2796158_-\|ferredoxin-reductase	unknown	unknown	gnl\|CDD\|99812
NZ_CP015117.1\|WP_016852185.1\|2784609_2786679_-\|AsmA-family-protein	unknown	unknown	gnl\|CDD\|225529
NZ_CP015117.1\|WP_003095483.1\|2782225_2782765_+\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|225167

Protein	Function_ID	Function_description	E-value
NZ_CP015117.1\|WP_016852187.1\|2793948_2795061_-\|fatty-acid-desaturase	gnl\|CDD\|225779	COG3239, DesA, Fatty acid desaturase [Lipid metabolism].	5.26797e-66
NZ_CP015117.1\|WP_016852186.1\|2788169_2788937_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239026	cd02108, bact_SO_family_Moco, bacterial subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. This domain is found in a variety of oxidoreductases. Common features of all known members of this family, like sulfite oxidase and nitrite reductase, are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.	4.55161e-96
NZ_CP015117.1\|WP_003095526.1\|2797175_2797679_+\|urease-accessory-protein-UreE	gnl\|CDD\|237322	PRK13261, ureE, urease accessory protein UreE; Provisional.	2.44267e-58
NZ_CP015117.1\|WP_003107570.1\|2796316_2796946_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|236881	PRK11202, PRK11202, HTH-type transcriptional repressor FabR.	4.59942e-41
NZ_CP015117.1\|WP_003095515.1\|2790362_2791052_+\|heavy-metal-response-regulator-transcription-factor	gnl\|CDD\|130454	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator. Members of this family contain a response regulator receiver domain (pfam00072) and an associated transcriptional regulatory region (pfam00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. [Regulatory functions, DNA interactions].	2.43467e-112
NZ_CP015117.1\|WP_003095503.1\|2786974_2787508_+\|bacterioferritin	gnl\|CDD\|225104	COG2193, Bfr, Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism].	1.01703e-50
NZ_CP015117.1\|WP_003095496.1\|2783795_2784608_+\|c-di-GMP-binding-multidrug-transporter-transcriptional-regulator-BrlR	gnl\|CDD\|226231	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown].	1.65802e-48
NZ_CP015117.1\|WP_003121125.1\|2779143_2780007_-\|oxaloacetate-decarboxylase	gnl\|CDD\|225311	COG2513, PrpB, PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism].	1.3777e-87
NZ_CP015117.1\|WP_016852185.1\|2784609_2786679_-\|AsmA-family-protein	gnl\|CDD\|225529	COG2982, AsmA, Uncharacterized protein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane].	0
NZ_CP015117.1\|WP_003095519.1\|2792412_2793729_-\|MFS-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.70918e-108
NZ_CP015117.1\|WP_003095488.1\|2782853_2783198_+\|osmotically-inducible-lipoprotein-OsmE	gnl\|CDD\|183058	PRK11251, PRK11251, osmotically-inducible lipoprotein OsmE.	1.90142e-51
NZ_CP015117.1\|WP_003099516.1\|2791030_2792422_+\|sensor-histidine-kinase	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	0
NZ_CP015117.1\|WP_003095476.1\|2780214_2781480_+\|Hsp70-family-protein	gnl\|CDD\|212673	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins. This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs.	0
NZ_CP015117.1\|WP_003095492.1\|2783241_2783649_-\|hypothetical-protein	gnl\|CDD\|377850	pfam07498, Rho_N, Rho termination factor, N-terminal domain. The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain (pfam07497).	0.000208897
NZ_CP015117.1\|WP_003095479.1\|2781654_2782071_-\|hypothetical-protein	gnl\|CDD\|183165	PRK11505, PRK11505, phosphate starvation-inducible protein PsiF.	1.76735e-18
NZ_CP015117.1\|WP_016852188.1\|2795057_2796158_-\|ferredoxin-reductase	gnl\|CDD\|99812	cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	8.19115e-87
NZ_CP015117.1\|WP_003161310.1\|2788933_2789548_-\|cytochrome-b/b6-domain-containing-protein	gnl\|CDD\|226602	COG4117, COG4117, Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion].	1.20616e-69
NZ_CP015117.1\|WP_003095483.1\|2782225_2782765_+\|MOSC-domain-containing-protein	gnl\|CDD\|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	5.52525e-29

>NZ_CP015117.1|WP_003095503.1|2786974_2787508_+|bacterioferritin
MTTVQLTDVQTLRDRARKNIQEGAVTEGYSADRQTVLRLLNEALATELVCFLRYKRHYFMATGLKASIAAAEFLEHANQEMQHADQLAERIMQLGGEPDFNPRGLEERSHAEYVEGKTLKDMVTENLIAERIAIDSYREIITYLGNDDPTTRRIFEEILAQEEEHADDMADILDDLA
>NZ_CP015117.1|WP_016852185.1|2784609_2786679_-|AsmA-family-protein
MTRGRKILTWSLASLVLLLAALVVFIATFDWNLIKPTLNEKVSAALNRPFAINGNLAVAWRREEGEEGWRAWIPWPRFSAEDITLGNPEWTAGKTKASEFASLERIEFRLALLPLLWQTIRIPQIKLTQPRADLLRLADGRANWDFDLPASDSDEPSAWQLDIREIGFDKGSVSLDDQRLKTRLEVLVDPLGKPVPFGQLAGKALATGDAANAQDYVFGWKVKGTYKGQALAGSGKVGGMLALQDASKPFPLQAEVSAGSTRAAVVGTLTDPLNLGALDLRLKLSGTSMANLYPLTGITLPDTPAYSTDGHLLARLKEEGGALFRYENFNGKVGASDLHGSLTFVARQPRPKLSGKLTSEQLRFADLGPLIGADSNAEKQKRGQTSRQPGDKVLPVEEFRTERWRDMDADVEFTGKRIVHSDQLPISDLYTHLVLNDGLLRLEPLRFGVAGGKLESDIRLDGGKQPMQSRVKMSARGFKLKQLFPGFAPMQTSFGELNGDASLSGSGNSVAKILGGADGELKMLINDGAISKGLTEIAGLNVGNYLVTKLFGDDEVKINCAAADFGLQKGLMTSRLFVFDTENALVNVDGTVNFANEKLDLDVTPHSKGLRIFSLRSPLYVRGTFAKPDAGVHAGPLVARGAGMIALGVTVGPAASLLALVAPSKSDDNQCTALLQRMRLPAKVPAGKR
>NZ_CP015117.1|WP_003095496.1|2783795_2784608_+|c-di-GMP-binding-multidrug-transporter-transcriptional-regulator-BrlR
MLTIGQLARIFEISTKTLRHYDAIGLFVPARTGSDNGYRYYQPEQIEQLSRILALRRLDVPLEAIDRLKRDGALDDPQRLRHFLQRHQHTLREEISARQRLLAELDRTLATLAHWRIRNMHARIVERPAFSVVGMEYFGSAPGDTIGQLWERFIPREHEIAGKHDPEVSYGICAQQPNGEFHYVAGFEVQEGWPVPEGMVRFQVPAQKYAVFTHKGTAPQIAESFQAIYSHLLAERGLEPKAGVDFEYYDQRFRGPLDPNSQVDLYIPIY
>NZ_CP015117.1|WP_003095492.1|2783241_2783649_-|hypothetical-protein
MPRGDKSKYSDKQQRKAEHIEESYKAKGVSESEAEARAWATVNKQSGGGERKGGSGRAKSETAKRADRKDSAHRAAQARSGRPANRGSASRGKRQGSTSVSEMTREELMQLARKRDIRGRSTMRKAELIEALSRA
>NZ_CP015117.1|WP_003095488.1|2782853_2783198_+|osmotically-inducible-lipoprotein-OsmE
MYKQSLAALFVMATLAGCASTKVQNPVNYITFRNEPLVKDVEKGMSQQEVLRIGGTPSGTQKRLMKPGSCNSYILNKDGQQQPFYVSFDGSGKVDGSGFLSCSELDRHERDARP
>NZ_CP015117.1|WP_003095483.1|2782225_2782765_+|MOSC-domain-containing-protein
MQQVIAVSLCATHAFSKQVRPAIRLLKGLGVEGDAHHGVTVKHRSRVRQDPTQPNLRQVHLIHEELHDELRASGFAIGPGTMGENITTRGVDLLGLPTGTRLRLGESALVELTGLRNPCSQLDNYQPGLTAAVLGRDEQGNLIRKAGVMAIVLEDGEVRPGDAIDIQLPPLPHRALEKV
>NZ_CP015117.1|WP_003095479.1|2781654_2782071_-|hypothetical-protein
MNILRIPMFVLAMAVSAHGFAATAQQEKMTACNAEATTKALKGDERKAFMSGCLKAGAPAGGKATAQQEKMKSCNADASAKSLKGDERKAFMSSCLKAGGSAKAATQQEKMKTCNADATAKALKGDERKAFMSTCLKK
>NZ_CP015117.1|WP_003095476.1|2780214_2781480_+|Hsp70-family-protein
MNPSTAARALGIDFGTSNSTVGWWRPEVEPLIELEDGKITLPSVVFFNVEERRPVYGRQALGEYLEGYEGRLMRSLKSLLGSKLLKSETTVLGSALPFKDLLGLFIGQLKARGEAAAGQAFDAVVLGRPVFFVDDDPEADREAQDTLVQVANKLGFKEVSFQYEPIAAAFDYERGIQREELVLIVDIGGGTSDFSLVRLAPERRNLAERQDDILATGGVHIGGTDFDKQLSLEGVMPLFGYGSRMKSDAFMPTSYHLNLATWHTINAVYAQKSQLALKNMRYDIVDSTGIDRLFRLIEERAGHWLAMQVEDSKIRLTETERLHLSLERIEAGLGVELTRGLFENAVDGLLERVRNSVAQLLASAGVDPDRVDTVFFTGGSSGIPALRRSVSAMLPNARHVEGNLFGSIGSGLAIEAKKRYG
>NZ_CP015117.1|WP_003121125.1|2779143_2780007_-|oxaloacetate-decarboxylase
MHRASHHELRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARVDPALTIIARTNAELIDVDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHLHIPLMLVTYGNPQLRDDARLARLGVRVVVNGHAAYFAAIKATYDCLREERGAVASDLTASELSKKYTFPEEYQAWARDYMEVKE
>NZ_CP015117.1|WP_003121124.1|2778437_2779052_+|hypothetical-protein
MMGPFRRLAHLIDQGRQLDAALAGDPFALPAPEDRYSVRQLHGLYPRRHPGLYAPLLGSLALLLGAAPLGLAALRLALPEAPLRPLGWLSALPLLAAWLWLIALLSRGASLGPRLARDASLLLVATGLLLRLASGETSGLVALGGGACAWLLFNSRAMQRYMELVYAQRLYRAQSANRPGSAQRRLANQAAYRERKRRERSGRS
>NZ_CP015117.1|WP_016852186.1|2788169_2788937_-|molybdopterin-dependent-oxidoreductase
MKGPEKKRAKIAIDPSSERQIVDLQRRLLLRGGLSLGALAMLSGCRLQDGDSVDKVLWAMSRWNDRVQAWLFSRTRLAPTFDPSQVASPFPFNAFYPAYNVPEIDLPEYRLQVSGRVRDKRPWSLEQLRRLPQASQVTQLICIEGWSAIGQWSGVPLRTFLELVGADTSAKYVGFKCADRYYSSLDMPSALHPQTLLALEMSGQALPEENGYPLRLRIPTKLGFKNAKHVVEIFVSNSNPGGYWEDQGYNWFSGV
>NZ_CP015117.1|WP_003161310.1|2788933_2789548_-|cytochrome-b/b6-domain-containing-protein
MNRALHAWPVRLCHWLNAYAMACLIGSGWGIYNASPLLDFRFPAWATLGGWLGGSIAWHLAAMWLLLGNGLCYLAHGLSSGHFRRDFLPLSAAGVWRDLRLALGLRLVHEPGRYNAVQRLLYWLVLALGALLVLSGLAIWKPVQLHGLTALFGGFQGARWVHFLAMAGVVGFVVVHLLLVLLVPRTLLPMIIGREWRRGRRSEG
>NZ_CP015117.1|WP_003116116.1|2789601_2790225_-|hypothetical-protein
MLRLKASPALFFGLLLASAASFAAQPPAGMLQPLRGTIQQAADDHLQLKARNGQQLTVRLTDKTAIRAVSLAKPEDIQPDSFIGTAAVPQPDGTLKALEVHVFAPSLRGSGEGHRPWENADGSASTMTNGTVGNLVVSQGRRMTVKYGDGEKTVVVPDDVPIVSLEPGERSLLKPGAKVVLFPQKGADGSLTALAISVGKDGVTPPM
>NZ_CP015117.1|WP_003095515.1|2790362_2791052_+|heavy-metal-response-regulator-transcription-factor
MRILVIEDDTKTGEYLKKGLGESGYAVDWSQHGADGLYLALENRYDLVVLDVMLPGLDGWQIMEVLRKKHDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTLLRRGVVREAEQVQLADLQLDVLRRKVSRQGQVIALTNKEFALLHLLMRREGEVLSRTLIASEVWDMNFDSDTNVVDVAIKRLRAKVDNPFPNKLIHTVRGIGYVCEERPCPPAAP
>NZ_CP015117.1|WP_003099516.1|2791030_2792422_+|sensor-histidine-kinase
MPARRSLTLYAALLFAAVAALVVSAVGFYLYRSVEEAMLRRSDVMVAGRVEHFRNLLRDNLTLAELKARPRLFENMLGNEQDILLLGQPGEAPIVAVNPRHERLPSLRVVAAGQALNPSVVHAALTHDGIPMRVLAAEVLVGGREPLQITAAHLLLGETRMLAQYRDRVIAAVLLAFLGTALLGWLVLRHGLRPLRTLAAKAAEIHPTSLDTRLDVAAAPAELQQVAQSFNAMLERLDDGYQRLQQFSADLAHEIRTPIGSLMGHGQVALRQPRSNEEYQALIASNQEELERIARMVESILFLARADDVRAAVERSRLDLGEELRRQAEYFEGLAEERGLSLDVQVSGQLRADPQLFRRALSNLLANAIRYASADSLIEVRGLRRSGEFLLSVENACDRLPAEPLSRLFDRFYRGDAARSDAQSSGLGLAIVQAIMRLHGGRAEASAPAPGRIRFDLAFPAQD
>NZ_CP015117.1|WP_003095519.1|2792412_2793729_-|MFS-transporter
MFSPLVTFPALYTATLLMLAGSGLFTTYIGLRLTQEGAGDLWVGGLMASYYFGLVCGGKFGHKLIASFGHIRSYVACAGIATVTVLLHALVDQLEVWLLLRFITGAVMMNQYMVIESWLNEQAESHQRGKVFAGYMVAVDLGLVLGQGLLALSPTLDYKPLLLVAICFASCLIPLAMTRRVHPAKLVAAPLEVRFFWQRVPQALGTIFIAGLMVGAFYGLAPVYANRNGLDASQSSFFVGMCIVAGFCAQWPLGWLSDRLDRSWLIRGNAVLLCLASIPMWGLVTLPYWLLLANGFVTGMLLFTLYPLAVALANDHVEQPRRVALSAMLLTTYGVGACIGPLVAGALMRHFGPGLFYMLVSGYAVLLVFWVQPKRVTGEHRVDEAPLQHVAMPDTVSPMAATLDPRVEEVPEELVVEAPANIGRSDGEPDAGEKPAQS
>NZ_CP015117.1|WP_016852187.1|2793948_2795061_-|fatty-acid-desaturase
MNRPASPAMRDDRELTPEQLAAFGAELDALRQRTLADLGADDARYIRRVRAAVRVCCWSGRALLMFGWLPPTWLLGSLLLGLGKILENMELGHNVMHGQYDWMNDPEFAGRAYEWDIAGPSDFWRHTHNHIHHTYTNVLGKDDDVGYGVVRLFPEQRWKPFYRWQPLWVTLQALLFQYAVAIQHLRLDKYAKGRLDKAELMPLLRRLRAKLGRQWTKDYLLFPLLGLFAGGFGAVFVGNLLANVLRNLWTFTVIFCGHFTEKAVVFPPSVLEGETRGHWYLRQLRGSSNLEGGPLFHILTGNLSHQIEHHLYPDLPARRYAALSREVREIARRYGQTYNSGRLGRQFLTVLRRIWVYRLPPREPLPAGRG
>NZ_CP015117.1|WP_016852188.1|2795057_2796158_-|ferredoxin-reductase
MALLPLALLTPLLAPLRRLAARGWLREADVDGLLRHAHPLASLNRHYARVEARYWVADDMLALALRTAPGWPPARPGQHIQLLAKRDGVRVGRSYSLTRVVGERLEIAVKRHPDGLLSPWLCEHLAVGQRVELQPAQGDLRWPMQAEAVCLLAAGSGLTPLLGLLREALENGYRGPVLWLHYVRHPGQRAWLGELEALAARHPNLELRWSLTRGARADGCLEGHFQPRHLDGWAADLARSQALACGPAAFVEAVGEQLGARFAGLQTESFSVPRWRSGEAPREVRLRFARSQREVSGDSAASLLEQAEAHGLRPAHGCRQGICASCTCVLLSGCVRDLRSGALCSEPGQPIRLCVSAAHGDLALDL
>NZ_CP015117.1|WP_003107570.1|2796316_2796946_+|TetR-family-transcriptional-regulator
MSSPRAEQKQQTRHALMSAARHLMESGRGFGSLSLREVTRAAGIVPAGFYRHFSDMDQLGLALVAEVDETFRATLRAVRRNEFELGGLIDASVRIFLDAVGANRSQFLFLAREQYGGSLPIRQAIASLRQRITDDLAADLALLNKMPHLDGAALDVFADLVVKTVFATLPELIDPPAADLPPHLMPAAKITHQLRFIMIGGKHWHGLPG
>NZ_CP015117.1|WP_003095526.1|2797175_2797679_+|urease-accessory-protein-UreE
MLVIHQRLPARSPRWDEELHLTYEARSKSRLRCFAASGEEVGLFLERGQPPLADGDCLEARDGRLVRVVARSERLLHVTCASPLELTRAAYHLGNRHVALQVGDGWLRLLDDYVLKAMLEQLGATVEAIEAPFQPEHGAYGGGHHHSHHGEAEFNYAPRLHQFGVRR

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Crispr_ID: NZ_CP015117_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015117_3

3513085-3513243

Orphan

Consensus_repeat	Method
CATGCGGTTCGGCGTCTTGGAGTGAGGCCGAGCCGACATCCTGTCGAGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015117_3

>merge|NZ_CP015117|3|3513085-3513243|CRISPRCasFinder
CATGCGGTTCGGCGTCTTGGAGTGAGGCCGAGCCGACATCCTGTCGAGGCTTCGTCGTTCAGCCCACCCCCGGCCCGGCCATCCTGGCCGGTCGTTCGCCCTTCAAAACGCATGCGGTTCGGCGTCTTGGGTGAGGCCGAGCCGACATCCTGTCGAGGC

>NZ_CP015117|3|3|3513085-3513243|CRISPRCasFinder
CATGCGGTTCGGCGTCTTGGAGTGAGGCCGAGCCGACATCCTGTCGAGGC	TTCGTCGTTCAGCCCACCCCCGGCCCGGCCATCCTGGCCGGTCGTTCGCCCTTCAAAAC
GCATGCGGTTCGGCGTCTTGGGTGAGGCCGAGCCGACATCCTGTCGAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015117.1\|WP_003099732.1\|3517838_3518648_+\|zinc-ABC-transporter-ATP-binding-protein-ZnuC	unknown	unknown	gnl\|CDD\|181939
NZ_CP015117.1\|WP_003097007.1\|3522226_3523009_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270315
NZ_CP015117.1\|WP_016852288.1\|3503191_3505207_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP015117.1\|WP_003118455.1\|3508939_3511681_-\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NZ_CP015117.1\|WP_003096984.1\|3511758_3512049_+\|DUF2782-domain-containing-protein	unknown	unknown	gnl\|CDD\|378588
NZ_CP015117.1\|WP_003096998.1\|3518640_3519429_+\|zinc-ABC-transporter-permease-subunit-ZnuB	unknown	unknown	gnl\|CDD\|181938
NZ_CP015117.1\|WP_003097004.1\|3521472_3522150_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_CP015117.1\|WP_003102827.1\|3512082_3513033_+\|homoserine-kinase	unknown	unknown	gnl\|CDD\|235369
NZ_CP015117.1\|WP_003096987.1\|3513322_3514012_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223287
NZ_CP015117.1\|WP_003122325.1\|3519470_3520259_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274513
NZ_CP015117.1\|WP_003122328.1\|3514028_3516233_-\|adenosylcobalamin-dependent-ribonucleoside-diphosphate-reductase	unknown	unknown	gnl\|CDD\|274168
NZ_CP015117.1\|WP_003096979.1\|3507551_3507845_-\|cytochrome-c5-family-protein	unknown	unknown	gnl\|CDD\|225784
NZ_CP015117.1\|WP_003096975.1\|3505203_3506082_-\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|226098
NZ_CP015117.1\|WP_003096992.1\|3517335_3517839_+\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NZ_CP015117.1\|WP_003097002.1\|3520465_3521473_+\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236863
NZ_CP015117.1\|WP_003096980.1\|3508028_3508676_+\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NZ_CP015117.1\|WP_003096976.1\|3506097_3506733_-\|thiol:disulfide-interchange-protein-DsbA/DsbL	unknown	unknown	gnl\|CDD\|239317
NZ_CP015117.1\|WP_003102836.1\|3502480_3503074_-\|MarC-family-protein	unknown	unknown	gnl\|CDD\|170674
NZ_CP015117.1\|WP_003102831.1\|3506900_3507506_-\|cytochrome-c4	unknown	unknown	gnl\|CDD\|225418
NZ_CP015117.1\|WP_003118453.1\|3516342_3517266_-\|zinc-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226908

Protein	Function_ID	Function_description	E-value
NZ_CP015117.1\|WP_003099732.1\|3517838_3518648_+\|zinc-ABC-transporter-ATP-binding-protein-ZnuC	gnl\|CDD\|181939	PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.	8.54289e-114
NZ_CP015117.1\|WP_003097007.1\|3522226_3523009_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270315	cd13597, PBP2_lipoprotein_Tp32, The substrate-binding domain of the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum binds L-methionine; the type 2 periplasmic-binding protein fold. This group includes the lipoprotein Tp32, a periplasmic component of a methionine uptake transporter system, and its closely related homologs. The Tp32 has both structural and sequential homology to the MetQ family of substrate-binding protein, and thus it belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.	6.38438e-133
NZ_CP015117.1\|WP_016852288.1\|3503191_3505207_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	3.50465e-62
NZ_CP015117.1\|WP_003118455.1\|3508939_3511681_-\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NZ_CP015117.1\|WP_003096984.1\|3511758_3512049_+\|DUF2782-domain-containing-protein	gnl\|CDD\|378588	pfam11191, DUF2782, Protein of unknown function (DUF2782). This is a bacterial family of proteins whose function is unknown.	3.76643e-30
NZ_CP015117.1\|WP_003096998.1\|3518640_3519429_+\|zinc-ABC-transporter-permease-subunit-ZnuB	gnl\|CDD\|181938	PRK09543, znuB, zinc ABC transporter permease subunit ZnuB.	7.07263e-93
NZ_CP015117.1\|WP_003097004.1\|3521472_3522150_+\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	1.33335e-106
NZ_CP015117.1\|WP_003102827.1\|3512082_3513033_+\|homoserine-kinase	gnl\|CDD\|235369	PRK05231, PRK05231, homoserine kinase; Provisional.	7.54032e-167
NZ_CP015117.1\|WP_003096987.1\|3513322_3514012_-\|hypothetical-protein	gnl\|CDD\|223287	COG0209, NrdA, Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism].	5.19108e-14
NZ_CP015117.1\|WP_003122325.1\|3519470_3520259_+\|hypothetical-protein	gnl\|CDD\|274513	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking].	0.000920553
NZ_CP015117.1\|WP_003122328.1\|3514028_3516233_-\|adenosylcobalamin-dependent-ribonucleoside-diphosphate-reductase	gnl\|CDD\|274168	TIGR02504, ribonucleotide_reductase, ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent. This model represents a group of adenosylcobalamin(B12)-dependent ribonucleotide reductases (Class II RNRs) related to the characterized species from Pyrococcus, Thermoplasma, Corynebacterium, and Deinococcus. RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. This model identifies genes in a wide range of deeply branching bacteria. All are structurally related to the class I (non-heme iron dependent) RNRs. In most species this gene is known as NrdJ, while in mycobacteria it is called NrdZ. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	0
NZ_CP015117.1\|WP_003096979.1\|3507551_3507845_-\|cytochrome-c5-family-protein	gnl\|CDD\|225784	COG3245, CycB, Cytochrome c5 [Energy production and conversion].	1.51706e-36
NZ_CP015117.1\|WP_003096975.1\|3505203_3506082_-\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|226098	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only].	1.23885e-61
NZ_CP015117.1\|WP_003096992.1\|3517335_3517839_+\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	1.3923e-42
NZ_CP015117.1\|WP_003097002.1\|3520465_3521473_+\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	0
NZ_CP015117.1\|WP_003096980.1\|3508028_3508676_+\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	6.08635e-107
NZ_CP015117.1\|WP_003096976.1\|3506097_3506733_-\|thiol:disulfide-interchange-protein-DsbA/DsbL	gnl\|CDD\|239317	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.	1.63388e-70
NZ_CP015117.1\|WP_003102836.1\|3502480_3503074_-\|MarC-family-protein	gnl\|CDD\|170674	PRK10739, PRK10739, YhgN family NAAT transporter.	4.81982e-48
NZ_CP015117.1\|WP_003102831.1\|3506900_3507506_-\|cytochrome-c4	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	1.5355e-43
NZ_CP015117.1\|WP_003118453.1\|3516342_3517266_-\|zinc-ABC-transporter-substrate-binding-protein	gnl\|CDD\|226908	COG4531, ZnuA, ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism].	4.92498e-156

>NZ_CP015117.1|WP_003102827.1|3512082_3513033_+|homoserine-kinase
MSVFTPLERSTLEAFLAPYDLGRLRDFRGIAEGSENSNFFVSLEHGEFVLTLVERGPVQDLPFFIELLDVLHEDGLPVPYALRTRDGEALRRLEGKPALLQPRLAGRHERQPNAHHCQEVGDLLGHLHAATRGRILERPSDRGLPWMLEQGANLAPRLPEQARALLAPALAEIAALDAERPALPRANLHADLFRDNVLFDGPHLAGLIDFYNACSGWMLYDLAITLNDWCSNTDGSLDPARARALLAAYANRRPFTALEAEHWPSMLRVACVRFWLSRLIAAEAFAGQDVLIHDPAEFEMRLAQRQNVEIHLPFAL
>NZ_CP015117.1|WP_003096984.1|3511758_3512049_+|DUF2782-domain-containing-protein
MRTLNRLMLAGLLAFAPLVAMAADDDAPSGEPDVTIRQEGDKTIQEYRVNGFLYAIKVVPKHGKPYFLVRADGSDGNFIRSDQPDKLIPQWEIFSW
>NZ_CP015117.1|WP_003118455.1|3508939_3511681_-|DNA-polymerase-I
MSQAPLVLVDGSSYLYRAFHALPPLTTSTGKPTGAVKGVLNMLLSLRKQYPDSPFAVVFDAKGPTFRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLARSSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSRLDVDGVKEKFGVGPELIIDFLALMGDKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLEENREQAFLSYQLATIKTDVELDVEIDKLYPGEPQREALIALYRELEFKNWLDDLLREAKEAGENGEAETPIQAEVDYDVVLDQAGFDAWLKKLEEAELIAFDTETTSIDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAVLRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAYDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVALERQAYDLAGQEFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDFELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEAQAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAINAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELVLEVREELVEQVCEGIRPLMSGAATLDVPLVVEAGVGSNWDEAH
>NZ_CP015117.1|WP_003096980.1|3508028_3508676_+|YihA-family-ribosome-biogenesis-GTP-binding-protein
MSEKNPIVGLCQKASFLISAAQVDQCPPDEGLEVAFAGRSNAGKSSALNTLTHANLARTSKTPGRTQLLNFFALDDSRRLVDLPGYGYAKVPIPLKQHWQRHLEAYLSSRASLAGVFLMMDIRHPLTDFDRLMLDWAQASQLPIHVLMTKADKLAFGAAKNALLKVRREVQQGWGDVATLQLFSAPKRQGVDEAQMVLAQWLGLLDEEQEAFEEA
>NZ_CP015117.1|WP_003096979.1|3507551_3507845_-|cytochrome-c5-family-protein
MKKLLLAATVVAVAVTAQAAQDPEAVFNRTCGACHDGQLPMAPKKGDHAAWEPRLAKGMPTLVQHVTNGFNAMPPRGLCTDCSAEDYQATIQWMVKK
>NZ_CP015117.1|WP_003102831.1|3506900_3507506_-|cytochrome-c4
MNKLLVSLLLTLGLTGLAHAAGDAAAGQAKAAVCGACHGADGNSPAPNFPKLAGQGERYLLKQMHDIKDGKRTVLEMTGLLTNLSDQDLADIAAYFASQKMSVGMADPNLVAQGEALFRGGKIAEGMPACTGCHSPSGVGIATAGFPHLGGQHATYVAKQLTDFREGTRTNDGDTKIMQSIAAKLSNKDIAAISSYIQGLH
>NZ_CP015117.1|WP_003096976.1|3506097_3506733_-|thiol:disulfide-interchange-protein-DsbA/DsbL
MRNLILTAMLAMASLFGMAAQADDYTAGKEYVELSSPVPVSQPGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFEAIHKEHKKLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVVNGKYRFDIGSAGGPEETLKLADYLIEKERAAAKK
>NZ_CP015117.1|WP_003096975.1|3505203_3506082_-|endonuclease/exonuclease/phosphatase-family-protein
MLRRWQREPRVAGSCDPRVNPSCDDSRELPDDGRLRLLSFNIQVGISTERYRHYLTRGWQHLLPHAGRATNLKRIGELLADYDLVALQEADGGSLRSGYVNQVEHLAQLGAFPYWYQQLNRNLGRIAQHSNGLLSRWRPTLLEDHPLPGPPGRGAIFVRFGEGADALVVVMMHLALGARTRTRQLAYIRELIGDYRHQVLMGDMNTHAVDLLENSPLRDLGLMAPQVEATFPSWRPQRNLDHILLSSDLALERVDVLDQPISDHLPVSVEIRLPDNLRDKALVVRGDAGSPP
>NZ_CP015117.1|WP_016852288.1|3503191_3505207_-|diguanylate-cyclase
MSRDDVQRWKDKYLENIEQQERLQRRWDARIDLLRRGLVRSSLAAEGSDKAVDQCMKELREILRRDDMDAGLSGLIPRLEKAVLDSEQRRQQRTQQNIDALGELAQQLLALDLPRELRKPLKQFARDIEERARQSREIPILLSELSRLQRQALAERKGGDAEDGRPSLLQRLFGGKESETAAEPSASVPSVVAASNTPIQPAAAAPSLPVAEHDEAPGGPPQPLPACTVAAIESAPAGWVGVAERGEPNQILLDEAREIWLDSLPLPAGLSFSETLEEAGAEPSPAMPADVESAPEAPATPVDNLDGQAVDEAYELPPPIPEPGYSAVAPHIEASLLRLLDGLSLPSSHQPQAEALRERIDGSLNWYELVPVLDDLAVLVLSLADSGQRDFEEYLRQLNERLESFLGHLGDAHAGYTDVLDNARGFDQSLREQVSGLQASVQQATDLNSLKLAVDSRLNGLLASMDEHQREQAEHEQEVSGRLQALMERVNSMEQDAKAFHSHLEDQRQKALTDPLTGLPNRAALSERLEQEVARRHRDGGDLLLAVLDIDHFKRINDDFGHLAGDKVLKIIAGELRKRLRQADFIARFGGEEFVVLLPATSLEAGRQLLERLRAAIAACPFHFKGEPLSITCSAGITAFEGNEAGEAVFERADQALYRAKRAGRDRLEVA
>NZ_CP015117.1|WP_003102836.1|3502480_3503074_-|MarC-family-protein
MDMFGVAVLIFLVTDPFGNIAVFLAALKGVAPGRRLRVAFRELAFALGLLLLFLTLGEHILSGLGLSREATGIAGGIILFVIAMRLIFPSPQGLLGEVPDGEPLLVPLATPAVAGPSALAMLITLRTTFDGPLWELYLAVVLAWAATALILLQAAFLQRFLGPRGLTAIERLAGMLLIMLSVDMLLDNLRSVLHIAA
>NZ_CP015117.1|WP_003096987.1|3513322_3514012_-|hypothetical-protein
MSAVKITQKIKGFKVVNEAEEQALAAAAEAASVVQMDETLERPDTLIGATYKIKSPLFEHALYVTINDMVLNAGTAHEQRRPFEIFINSKNMDHFQWIVALTRIMSAVFRKGGDCTFLVEELKAVFDPRGGYLKKGGIYMPSIVAEIGGVLERHLTAIGLLRGPELDEEQRLFLAEKRAAYEAAQGTSKVEPGEGFPAGAQLCGKCNSMAVVQMDGCATCLNCGHSKCG
>NZ_CP015117.1|WP_003122328.1|3514028_3516233_-|adenosylcobalamin-dependent-ribonucleoside-diphosphate-reductase
MLRTVAGFGRPNNHREVNQRMAKTDARSPRTERGTIALQDASQDIWDKKYRLKSKDGTPVDASVDGTWQRVARALADVEDKASREHWYGRFLWALRNGAIPAGRIISNAGALGHKPATSTINCTVSGTIQDSMDNILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKREDGRLRQFNLSLLITDQFMQAVEQDADWPLVFPVHVKERDEIDLDDPNAVVWREWPIQDDYVQRADGLVACKVYGQVRARHLWDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPYGSCLLGSVNLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGFLGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAEMLRKRPEMAADGYKAGDRIRGSVLHAKYSRYMQRVAEHAPELIEALAETGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRNLIREGRKTKEKVEVYSYELLAYRTLVNAQALPDSDDPARRLPDYFITADSVTPAQHVDIQAAAQKWVDSSISKTANVPTDYPFEDFKDIYRYAWHQGLKGCTTFRFNPEAFQGVLVKESDLEKTRYRFELEDGSVVEFKGNEQVEYDGEIHTAANLFDALKEGYYGKY
>NZ_CP015117.1|WP_003118453.1|3516342_3517266_-|zinc-ABC-transporter-substrate-binding-protein
MTLRPFALLSACFALFLLASPARAEVSVMTSIKPLQLVAAAIQDGVGQPDVLLPPGASPHQYALRPSDVRRLREVQLFYWIGPDLENFLPKVLAGRQGASVAVQDLPGMHLRKFVNFEEEEHAGHDEHDHDHRPGMLDAHLWLLPANARTIAARMAEDLAQVDPANAGRYRANLKAFEERLGGLDGKLRERLGKLAGKPFFVFHEAFDYFEEAYGLRHTGVFAVSAEVQPGARHVAAMRAQLKAAGPACIFSEPPLRPRLADTLSEGLPVRLAELDDLGVNVSVDANGYENLLNNLAGEFAGCLEKL
>NZ_CP015117.1|WP_003096992.1|3517335_3517839_+|transcriptional-repressor
MYKIAPKTPLACQPHDHSQCVSTALAEADALCARQGVRLTELRRRVLELVWQSHKPLGAYDILAVLSETDGRRAAPPTVYRALDFLQENGLVHRIASLNAFVGCNNPEHSHQGQFLICRTCHTAIELEQPDISRAIVAGANSVGFAVESQTVEVVGLCGTCRDQKDA
>NZ_CP015117.1|WP_003099732.1|3517838_3518648_+|zinc-ABC-transporter-ATP-binding-protein-ZnuC
MDNALVRLTQVGVSFNGQAVLSDVDLAIEPGQIVTLIGPNGAGKTTLVRSVLGLLKPHVGEVWRRPRLTIGYMPQKLHVDATLPLSVLRFLRLVPGVRREQALAALREVGAAHVLERPLQSISGGELQRVLLARALLRKPELLVLDEPVQGVDVAGQAELYRLIGKLRDRYGCGVLMVSHDLHLVMSATDQVVCLNRHVCCSGHPEQVSGDPAFVELFGQDARSLAIYHHHHDHAHDLHGEVVKAGPGALPPGTRFTPVHKHGPDCNHG
>NZ_CP015117.1|WP_003096998.1|3518640_3519429_+|zinc-ABC-transporter-permease-subunit-ZnuB
MADFLLNALLAGLALALVAGPLGSFVVWRRMAYFGDTLSHAALLGVALGFLLDVSPTLAVTVGCVLLAVLLVTLQQRQPLAADTLLGILAHSTLSLGLVTLSFMKEVRVDLMAYLFGDLLAVSASDLLWIIAGSALVLALICFLWRPLLAITVHEELAKVEGLPVGAIRLALMLLIAIVIAVAMKIVGVLLITSLLIIPAAAAQRHARSPEQMAVGASLLGLVAVCAGLALSWFKDTPAGPSIVVSAAGLFLLSFVLPRRTV
>NZ_CP015117.1|WP_003122325.1|3519470_3520259_+|hypothetical-protein
MSSFFRLLSVLAAALLVSACQGNASSQPTPVVAPQAQPADPYAELQQTLAAGKLEQAEQQWLALRSAAAGDERVEAFRRQLAEAYMQRGETALRQGDLNTATSALGHARGLMPKAPALTAGLDGAINRAKVDPARAEQARRMQQAAQQQMQQIIQTPPGGELKPLPGAPHLIDPQAASSAVPLPMLDGTGQGGLGAVLDAVAADVVAYRCRVHIEVRRDSDYPLVSDQLLARVKKLSPDFDLHLSHVVQADKPTRLILTPRN
>NZ_CP015117.1|WP_003097002.1|3520465_3521473_+|methionine-ABC-transporter-ATP-binding-protein
MIEFHDVHKTYRVAGREIPALQPTRLNIQAGQIFGLIGHSGAGKSTLLRLINRLEEPSGGRILVEGEDVTALDAEGLRRFRQRVGMIFQHFNLLSSKTVADNIAMPLRLAGGFSRAEVDARVSELLARVGLSDHARKYPAQLSGGQKQRVGIARALACRPSILLCDEATSALDPQTTASVLQLLAEINRELKLTIVLITHEMDVIRRVCDQVAVMDGGAIVEQGDVADVFLHPQHPTTRRFVFEAERVDEDERHDDFAHVPGLILRLTFRGEATYAPLLGTVARQTGVDYSILSGRIDRIKDTPYGQLTLALVGGDLEAAMSQLNAADVHVEVLR
>NZ_CP015117.1|WP_003097004.1|3521472_3522150_+|ABC-transporter-permease
MDFFETMSFANIDWYEIWLASVDTFWMLGGSLLFTVVLGLPLGVLLFLTGPRQMFEQKAVYTLLSLVVNILRSLPFIILLIVMIPLTVLITGTSLGVAGAIPPLVVGATPFFARLVETALREVDKGIIEATQAMGASTRQIIWNALLPEARPGIIAAITVTAITLVSYTAMAGVVGAGGLGDLAIRFGYQRFQTDVMVVTVVMLLILVQILQTVGDKLVVHFSRK
>NZ_CP015117.1|WP_003097007.1|3522226_3523009_+|ABC-transporter-substrate-binding-protein
MKKLLAAFSAVAALGLTAAQAAESLTVAATPVPHAEILNVVKPLLAKEGVDLKIKEFTDYVQPNVQVSEKRLDANFFQHQPYLDEFNKAKGTDLVAVTGVHIEPLGAYSSKYKKLDELPSGATVVIPNDATNGGRALLLLDKAGVIKLKDNKSITATPKDIVDNPKNIKIRELEAATLPRVLTQVDMALINTNYALEAKLNPTKDALAIEGSDSPYVNILVARPDNKDSDAMQKLAKALHSAEVKQFIQEKYKGAVVPAF

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Crispr_ID: NZ_CP015117_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015117_4

3943323-3943436

Orphan

Consensus_repeat	Method
GGCCAAAGAACTGGAGGGCAAGGTATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015117_4

>merge|NZ_CP015117|4|3943323-3943436|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGAGCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGTGGCCAAAGAACTGGAGGGCAAGGTATGA

>NZ_CP015117|4|4|3943323-3943436|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGA	GCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGT
GGCCAAAGAACTGGAGGGCAAGGTATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015117.1\|WP_016852355.1\|3949226_3950246_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP015117.1\|WP_016852353.1\|3934910_3935663_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|336781
NZ_CP015117.1\|WP_003118762.1\|3948616_3949228_-\|thiol-disulfide-isomerase	unknown	unknown	gnl\|CDD\|239267
NZ_CP015117.1\|WP_016852350.1\|3931212_3931878_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP015117.1\|WP_003112942.1\|3948008_3948512_-\|transcriptional-regulator	unknown	unknown	unknown
NZ_CP015117.1\|WP_003084339.1\|3953103_3953796_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP015117.1\|WP_003112945.1\|3952606_3953101_+\|DUF523-domain-containing-protein	unknown	unknown	gnl\|CDD\|224597
NZ_CP015117.1\|WP_003084301.1\|3940135_3941233_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP015117.1\|WP_003111119.1\|3929861_3930740_-\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
NZ_CP015117.1\|WP_003084299.1\|3938613_3939717_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP015117.1\|WP_016852354.1\|3944479_3946867_-\|penicillin-acylase-family-protein	unknown	unknown	gnl\|CDD\|225241
NZ_CP015117.1\|WP_003084297.1\|3937127_3938498_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994
NZ_CP015117.1\|WP_003112937.1\|3933255_3934632_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP015117.1\|WP_003084320.1\|3950265_3951018_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015117.1\|WP_003118764.1\|3951066_3951765_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226274
NZ_CP015117.1\|WP_003084303.1\|3941287_3942442_+\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
NZ_CP015117.1\|WP_003107781.1\|3931938_3933000_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP015117.1\|WP_003112941.1\|3946977_3948030_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NZ_CP015117.1\|WP_016852356.1\|3951786_3952341_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015117.1\|WP_003084290.1\|3935703_3937062_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252

Protein	Function_ID	Function_description	E-value
NZ_CP015117.1\|WP_016852355.1\|3949226_3950246_+\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	1.73073e-56
NZ_CP015117.1\|WP_016852353.1\|3934910_3935663_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	4.197e-109
NZ_CP015117.1\|WP_003118762.1\|3948616_3949228_-\|thiol-disulfide-isomerase	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	0.00342131
NZ_CP015117.1\|WP_016852350.1\|3931212_3931878_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.56691e-09
NZ_CP015117.1\|WP_003084339.1\|3953103_3953796_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.29364e-79
NZ_CP015117.1\|WP_003112945.1\|3952606_3953101_+\|DUF523-domain-containing-protein	gnl\|CDD\|224597	COG1683, COG1683, Uncharacterized conserved protein [Function unknown].	2.14015e-67
NZ_CP015117.1\|WP_003084301.1\|3940135_3941233_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP015117.1\|WP_003111119.1\|3929861_3930740_-\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP015117.1\|WP_003084299.1\|3938613_3939717_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP015117.1\|WP_016852354.1\|3944479_3946867_-\|penicillin-acylase-family-protein	gnl\|CDD\|225241	COG2366, COG2366, Protein related to penicillin acylase [General function prediction only].	0
NZ_CP015117.1\|WP_003084297.1\|3937127_3938498_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
NZ_CP015117.1\|WP_003112937.1\|3933255_3934632_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	1.09186e-161
NZ_CP015117.1\|WP_003118764.1\|3951066_3951765_+\|hypothetical-protein	gnl\|CDD\|226274	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones].	2.81845e-78
NZ_CP015117.1\|WP_003084303.1\|3941287_3942442_+\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
NZ_CP015117.1\|WP_003107781.1\|3931938_3933000_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.00795e-165
NZ_CP015117.1\|WP_003112941.1\|3946977_3948030_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	2.54039e-32
NZ_CP015117.1\|WP_003084290.1\|3935703_3937062_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	5.71424e-158

>NZ_CP015117.1|WP_003084303.1|3941287_3942442_+|polyamine-ABC-transporter-ATP-binding-protein
MAIASGAYKKALEGNQQPKEVLVKIDRVTKQFDETLAVDTVSLTINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIFLDGQDITDLPPYERPINMMFQSYALFPHMSVAQNIAFGLKQDGLPKAEIDERVAEMLKLVHMTQYAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAQRIAIMHLGCIEQIGSPMDIYETPASRLVCEFIGNVNLFDGVLVEDVQDHAVIACPQLENPIYIGHGISTRAEDKRITYALRPEKVMISAQKPDNLEHAGHNWAQGTVYDIAYLGGHSVYYIKLASGMIVQAFMANAERHVARPTWDQSVYISWYDDSGVVLQS
>NZ_CP015117.1|WP_003084301.1|3940135_3941233_+|polyamine-ABC-transporter-substrate-binding-protein
MQHSIGKTLLVAALATAIAGPVQAEKKSLHIYNWTDYIAPTTLKDFTKESGIDVSYDVFDSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAYAFIDYLLRPEVIAKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTRIKTGK
>NZ_CP015117.1|WP_003084299.1|3938613_3939717_+|polyamine-ABC-transporter-substrate-binding-protein
MMKRFGKTLLALTLAGSVAGMAQAADNKVLHVYNWSDYIAPDTLEKFTKETGIKVVYDVYDSNEVLEAKLLAGKSGYDVVVPSNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIMAEITDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPDLPAKTQRAMTRSWTKIKSGK
>NZ_CP015117.1|WP_003084297.1|3937127_3938498_+|aspartate-aminotransferase-family-protein
MNSQITNAKTREWQALSRDHHLPPFTDYKQLNEKGARIITKAEGVYIWDSEGNKILDAMAGLWCVNVGYGREELVQAATRQMRELPFYNLFFQTAHPPVVELAKAIADVAPEGMNHVFFTGSGSEANDTVLRMVRHYWATKGQPQKKVVIGRWNGYHGSTVAGVSLGGMKALHEQGDFPIPGIVHIAQPYWYGEGGDMSPDEFGVWAAEQLEKKILEVGEENVAAFIAEPIQGAGGVIVPPDTYWPKIREILAKYDILFIADEVICGFGRTGEWFGSQYYGNAPDLMPIAKGLTSGYIPMGGVVVRDEIVEVLNQGGEFYHGFTYSGHPVAAAVALENIRILREEKIIEKVKAETAPYLQKRWQELADHPLVGEARGVGMVAALELVKNKKTRERFTDKGVGMLCREHCFRNGLIMRAVGDTMIISPPLVIDPSQIDELITLARKCLDQTAAAVLA
>NZ_CP015117.1|WP_003084290.1|3935703_3937062_+|glutamine-synthetase
MTTKLDQLTSWLKERKITEVECLISDLTGIARGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYDLLDPADIDMVCRPDENAVFLVPWAIEPTAMVIHDTFDKLGNPIELSPRNILKRVLKMYADKGWRPIVAPEMEFYLTKRSDDPDYPLQAPVGRSGRQETGRQSFSIDAANEFDPLFEDMYDWCEAQGLDLDTLIHEEGTAQMEINFRHGDALDLADQILVFKRTMREAALKHNVAATFMAKPMTGEPGSAMHLHQSIVDVKTGKNIFSNADGTMSELFLHHIGGLQKFIPEVLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDSSPENRRVENRLAGADANPYLALAASLLCGYIGMVEGIKPSAQVKGRGYERRNLRLPLTIEAALERMENCKPLEQYLGSKFISGYVAVKRAEHENFKRVISSWEREFLLLSV
>NZ_CP015117.1|WP_016852353.1|3934910_3935663_+|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MSRLPLIGVTACTKQIGLHPYHIAGDKYLRAVVNGAGGLPLIIPALGDSIDQAALLDSVDGLLFTGSPSNVEPRHYSGPASEPGTLHDSDRDATTLPLVRAAIDAGIPVLGICRGFQEMNVAFGGSLHQKVHEVGTFMDHREPADQPLEVQYAPRHAMHVQPGGVLAGIGLPSEFQVNSIHGQGVDRLAPGLRVEALAPDGLVEAISVEGAKAFALGVQWHPEWQVLTNPNYLAIFQAFGKACSKRAGQR
>NZ_CP015117.1|WP_003112937.1|3933255_3934632_-|glutamine-synthetase
MSVPQRAVQLTEPSEFLKEHPEVQFVDLLIADMNGVVRGKRIERNSLNKVFEKGINLPASLFALDITGSTVESTGLGLDIGDADRICYPIPGTLSMEPWQKRPTAQLLMTMHELEGEPFFADPREVLRQVVARFTEMELTIVAAFELEFYLIDQENVNGRPQPPRSPISGKRPQSVQVYSIDDLDEYVECLQDIIDGARAQGIPADAIVAESAPAQFEVNLNHVNDALKACDHAVLLKRLVKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISLLDKHGNNIFTSEDPEQNAALRHAIGGVLETLPASMAFLCPNVNSYRRFGSQFYVPNAPSWGLDNRTVALRVPTGSPDAVRLEHRVAGADANPYLLLAAVLAGVHHGLTNKVEPGAPIEGNSYEQMEPSLPNNLRDALRELDESEIMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>NZ_CP015117.1|WP_003107781.1|3931938_3933000_-|polyamine-ABC-transporter-substrate-binding-protein
MPRLSALLFLALAPWLAQAEETLRVYNWNDYIDPQVLESFQKDTGIRVEYHTFATAEELDKALRSGEAIDVAVPSHDTLPALLKDNLLRPLDFTQLPNRSHLDRQLLSKLAAVDPDNRHAVPYLWGAVGLAINTPQAEAAYGGPLPNSWSLLFDASQSQRLKSCGISLLDAPDETLAILLNYQGRNLGRTAPSQVRRAAEALHGLRPNLRYVDSERYIADLEGGRLCLAMAWVGDALRAAKAGQPVSFEVPQEGSVLFIDNLVIPAGAQHPREAHRFIDYLMQPKIAAQITAATLYPSGNADAAGFLDPALRQQPGLYPDRDTSRRLFALETPPEKLRPVVDEIWKAFRGASH
>NZ_CP015117.1|WP_016852350.1|3931212_3931878_-|TetR/AcrR-family-transcriptional-regulator
MQPTSSTRKPRASSQARIAAILDAARGLLADEGISGLTIYSVAERAEMPPSSVYHFFPSVPALLQGLTGEVHAAFRACLEQPVDHAGLRCWRDLSRIVEERMLAVYARDAAARQLILASHGLAEVTQADRQHDVQLGQAMRALFERHFLLPPLPTDIEIFSLAMELGDRVYALSVQRHGIIDARLAEEGMRVFDAYLGLYLPPILEKRSEPLSGFISDLNR
>NZ_CP015117.1|WP_003111119.1|3929861_3930740_-|N-carbamoylputrescine-amidase
MTRNVTVAATQMACSWDRPANIARAEKLVRQAAARGAQIILIQELFETPYFCQKPNPDYLQLATTVEENAAIAHFQALARELQVVLPISFFERAGRARFNSIAVIDADGGNLGVYRKSHIPDGPGYHEKYYFNPGDTGFKVWQTRYARIGVGICWDQWFPESARSMALLGAELLFYPTAIGSEPHDASISSRDHWQRVQQGHAGANLMPLVASNRIGREEQDGYDITFYGSSFIADPFGEKVEELNRTEEGILVHTFDLDALERTRSAWGVFRDRRPNLYGPLKTLDGSLES
>NZ_CP015117.1|WP_016852354.1|3944479_3946867_-|penicillin-acylase-family-protein
MKRTLTVIAVAVAAAAAGGAWYLHAKQPLRNGSLALAHLQAPVDVRYDERGVPHLYAQNQTDLYRALGYVHAQDRLFQMEMLRRLARGELAEVLGPKLVDTDRLFRTLRIRDHAAEYSARQDKQSQPWKVLEAYLDGVNQFQENNPAPLEFDLLGIPRRPFTPEDTLSIAGYMAYSFAAAFRTEPVLTYIRDELGSDYLRIFDLDWHPQGVLTPSGALGAGDWKDLGALARLSQQALEDAGLPQFEGSNAWVVAGSRTASGKPLLAGDPHIRFAAPAVWYEAQLSAPGFELYGHHQALNPFASLGHNRAFGWSLTMFQNDDLDLVAEKVNPDNPNQVWYQGEWVDLQSEEQEIAVKGAAPVKLTLRRSPHGPIVNDALGASSGKTPIAMWWAFLETENPVLDAFYQLNRADTLAKARAAASKIHSPGLNLVWANAAGDIGWWASAALPKRPEGVNPSFILDGSKGEADKSGFYPFADNPQEENPARGYIVSANFQPVPANGRPIPGYYNLADRGQWLDTQLADRGTKWNLDNSRALQLGNRTGYAPRLLAPLLPVLREVVDDAEGKRLVEQLAAWNGDYPVDSTAATLFNQLLFQIAEGALHDELGDAFFDSLIATRAIDSALPRLAGDADSPWWDDRRTERRETRADIVRTAWNASLAHLRGTLGNDPSGWLWGKAHTLTHEHALGQQALLKRLLNVGPFAAPGTHEVPNNLSAKIGPAPWAVTYGPSTRRLVDFADPTHSLGINPVGQSGVPFDGHYDDQAEAYIEGHYLPQHYEENEVKANSKGVLVLEPKR
>NZ_CP015117.1|WP_003112941.1|3946977_3948030_+|AraC-family-transcriptional-regulator
MQDDPSTSPLTHSATLRRLLYEALDALGLDPTRVYRSVYRRIPLPPPTLGGRLVHDNAPLFWTELAAVTGDADIGLHLGEAMKPRLLDVVGYLLLSARDLEEALRSFVRFQHILSGGFAARLEVEGETARLILDINYLGYASLRQQIECLMLLFLKLLALISDDEFVAERIEFRHRAPPRLGEHRRLFGRLPLFSRPHDALVFSAALLRRPSRNANPDMHDVLTRHAEEQSRELSENRLLNRVRYLIELRLGEGYGLRQCAAELGLGSGALQRALAAGGASFRQVRDEVRRQRASEMLLAGRAIREVAKACGFAELSPFYRAFRRWHAAPPEQYRARLAKREEGYSTSGT
>NZ_CP015117.1|WP_003112942.1|3948008_3948512_-|transcriptional-regulator
MSLRPTLALLALVSLPLMAAQNDPQPSSKELMKEHQAQIQNDLADVDYKRKRIVEANMNLTDQEGEKFWPIYNTYRTESDKLSKETLKLLLDYAQAYNSGNVSDDQASKLIERVDDLQEDRLELRDKYVKRIAKNVSPKRAMRFLQIEIQLDAIATLEIGRQVPLVE
>NZ_CP015117.1|WP_003118762.1|3948616_3949228_-|thiol-disulfide-isomerase
MASLAPVFRVNAMTPRRKTLLVSLVGLLWAGGLLAAYWWFEIRYIRPFSEQTTLFSGDSLRLPAELAGPGAIRLVHFWDPACPCNVGNQQHLGELIERFAGKGVEFHVLQKPGSQGRLPDNLAALRPLAGLPGSEQLPASPAVAIWDRDGRLAYFGPYSEGAVCTSSNSFIEPILEALLQGRPVDATHTLAVGCYCPWTPEKG
>NZ_CP015117.1|WP_016852355.1|3949226_3950246_+|alpha/beta-hydrolase
MCSRAAEYPWVSPVARPRIDCSPEPPMSEAFNPDYLRQHLRPLAAAEADAAVLAYQAYYGLDLCSRHPRLQARLGSMAVDGRRLAVQAWLLPEARGSLLLMHGYYDHMGLYRHVVDWALGMGFSVLACDLPGHGLSEGERASIRDFAEYQAVFKGLLGQAAELDLAAPWHLCGQSTGGAILLDYLLHGGERPELGETILLAPLVRPRAWGWSKLSYRLLSPFVDSIPRRFSENSSDPQFLDFLREHDPLQPRTLPTAWVGALTRWVPRIERAPRRALSPLVVQGESDETVDWRHGLKVLREKFDEPRILLLEEARHHLANESEGLRRRYFDFLSDALGA
>NZ_CP015117.1|WP_003084320.1|3950265_3951018_-|hypothetical-protein
MRALLAFALLLVGLPALADPYQRLYQAAGWPDQRAHFSDALDAAQKRYQDKLPPALYQTLVDNSNRRFAPAEVDQRALNGLRENLPDSASPLNFFESPLGRKVVAAEVLATRRDQLLQHSNGLPRQTASEPRRALVKRLAQVLPAREAGAEVSLALAGVAADSLSQMLPGLPGLLGGGQTGQLLEGQRQRLVQQIGADLENTLLYVYRDLSDAELTQYVNFAESPAGRSYYQAALAALKAGLAVDQAVAP
>NZ_CP015117.1|WP_003118764.1|3951066_3951765_+|hypothetical-protein
MGRYCRHAADRLSRHRGGTLQWTMHINVNHPLLHRIVDELVDQGWSHQSIFMPERLTTRLAEECRTRAVAGDLTPAAIGRGDGQVIREGIRGDLTQWLEPGESEACDEYLGVMDSLRQALNASLFLGLEDFECHFALYPPGAYYQKHVDRFRDDDARTVSAVLYLNDAWLPEHGGALRLHLPQRQVDIQPTGGSLVVFMSAGTEHEVLPASRDRLSLTGWFRRRNESLLQLS
>NZ_CP015117.1|WP_016852356.1|3951786_3952341_-|hypothetical-protein
MLPTRSLLPFFLAPALLASAASQAAMEALDNDSLSQVTGHAGISLRLDLRAGAARVAWVDDGGSLSLRNLVIDNGCVKAGDCPDGRGGNIPLGAAQLGLSLPIFGVEQPTLALDVTTGSGGGQQLAISLPDLATINDQLIASGLPAQRIRLRVASDLYIGDNSIGRIELRDITDLRGTIKVWGH
>NZ_CP015117.1|WP_003112945.1|3952606_3953101_+|DUF523-domain-containing-protein
MQKVLVSRCLLGHLVRYDGGSHGPFDLLSRWHAQGRIVALCPEVAGGLPTPRPPAEIPGGQGGEVLDRLNRVFTVDGEDVSEAFLLGAEAAVELVRRHDIRMAVLKARSPSCGNLENYDGRFNGNRVAGEGVTAAALKRMGVLVFNEDELDRAAVCLAGLDAGG
>NZ_CP015117.1|WP_003084339.1|3953103_3953796_-|amino-acid-ABC-transporter-permease
MNSLQKLLEWLANLVELLGMAWPFLLQGAMYTVLFAAVSMVLGLILGFSVAVVRVTKVPVVSQIAAVYVSAFRGTPLLVQIFVLYYGLPSVGIEFTPVTAGILALTLNVAAYLSESMRGAILGIDKGQWEAGLSVGLTWGQTLWNIITPQALRLAVPSLSNSLISLIKDTSLISVITVTELMLATKEVIAETFQPLPLYLAAAGIYWLLSALFERVQKALENRLTAPLRR

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Crispr_ID: NZ_CP015117_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015117_5

5441445-5441546

Orphan

Consensus_repeat	Method
GCGGCGGGTATCGGCGGATAACGCC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP015117_5

>merge|NZ_CP015117|5|5441445-5441546|CRISPRCasFinder
GCGGCGGGTATCGGCGGATAACGCCTCCGGCGTTATTCGCCCTACGCGGAGGGTTCCCAGCTTTCGCTCCGCCGTTGCGGCGGGGTATCGGCGGATAACGCC

>NZ_CP015117|5|5|5441445-5441546|CRISPRCasFinder
GCGGCGGGTATCGGCGGATAACGCC	TCCGGCGTTATTCGCCCTACGCGGAGGGTTCCCAGCTTTCGCTCCGCCGTTG
CGGCGGGGTATCGGCGGATAACGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015117.1\|WP_003114811.1\|5441682_5442807_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225688
NZ_CP015117.1\|WP_003114814.1\|5448254_5448896_+\|FMN-dependent-NADH-azoreductase	unknown	unknown	gnl\|CDD\|224103
NZ_CP015117.1\|WP_003116401.1\|5449000_5449900_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NZ_CP015117.1\|WP_016852631.1\|5433591_5434953_-\|alpha/beta-fold-hydrolase	unknown	unknown	unknown
NZ_CP015117.1\|WP_003109182.1\|5441264_5441423_+\|DUF3309-domain-containing-protein	unknown	unknown	gnl\|CDD\|378708
NZ_CP015117.1\|WP_003091540.1\|5442839_5443106_-\|DUF2790-domain-containing-protein	unknown	unknown	gnl\|CDD\|371321
NZ_CP015117.1\|WP_016852630.1\|5432784_5433588_-\|VacJ-family-lipoprotein	unknown	unknown	gnl\|CDD\|225409
NZ_CP015117.1\|WP_003114813.1\|5445827_5446655_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|131480
NZ_CP015117.1\|WP_003109191.1\|5449909_5450245_-\|tRNA-binding-protein	unknown	unknown	gnl\|CDD\|182232
NZ_CP015117.1\|WP_003091534.1\|5446661_5447591_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP015117.1\|WP_003091533.1\|5447790_5448108_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015117.1\|WP_003116398.1\|5438733_5440533_+\|cyclic-nucleotide-binding/CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225457
NZ_CP015117.1\|WP_003114812.1\|5445282_5445846_-\|peptidylprolyl-isomerase-A	unknown	unknown	gnl\|CDD\|182824
NZ_CP015117.1\|WP_023082219.1\|5435126_5435312_-\|DUF2061-domain-containing-protein	unknown	unknown	gnl\|CDD\|225746
NZ_CP015117.1\|WP_003091546.1\|5436988_5438644_+\|cation-acetate-symporter	unknown	unknown	gnl\|CDD\|236495
NZ_CP015117.1\|WP_003091547.1\|5436680_5436992_+\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|225704
NZ_CP015117.1\|WP_003109184.1\|5443387_5445220_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP015117.1\|WP_003116397.1\|5431786_5432644_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP015117.1\|WP_003114808.1\|5435605_5436463_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270357
NZ_CP015117.1\|WP_003114810.1\|5440529_5441156_+\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236391

Protein	Function_ID	Function_description	E-value
NZ_CP015117.1\|WP_003114811.1\|5441682_5442807_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225688	COG3146, COG3146, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP015117.1\|WP_003114814.1\|5448254_5448896_+\|FMN-dependent-NADH-azoreductase	gnl\|CDD\|224103	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism].	1.18979e-103
NZ_CP015117.1\|WP_003116401.1\|5449000_5449900_-\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	1.27099e-12
NZ_CP015117.1\|WP_003109182.1\|5441264_5441423_+\|DUF3309-domain-containing-protein	gnl\|CDD\|378708	pfam11752, DUF3309, Protein of unknown function (DUF3309). This family is conserved in bacteria but its function is not known.	2.8739e-06
NZ_CP015117.1\|WP_003091540.1\|5442839_5443106_-\|DUF2790-domain-containing-protein	gnl\|CDD\|371321	pfam10976, DUF2790, Protein of unknown function (DUF2790). This family of proteins with unknown function appear to be restricted to Pseudomonadaceae.	1.53651e-35
NZ_CP015117.1\|WP_016852630.1\|5432784_5433588_-\|VacJ-family-lipoprotein	gnl\|CDD\|225409	COG2853, VacJ, Surface lipoprotein [Cell envelope biogenesis, outer membrane].	1.05866e-100
NZ_CP015117.1\|WP_003114813.1\|5445827_5446655_-\|alpha/beta-hydrolase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	9.99012e-42
NZ_CP015117.1\|WP_003109191.1\|5449909_5450245_-\|tRNA-binding-protein	gnl\|CDD\|182232	PRK10089, PRK10089, chaperone CsaA.	1.70058e-64
NZ_CP015117.1\|WP_003091534.1\|5446661_5447591_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.24343e-39
NZ_CP015117.1\|WP_003116398.1\|5438733_5440533_+\|cyclic-nucleotide-binding/CBS-domain-containing-protein	gnl\|CDD\|225457	COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms].	0
NZ_CP015117.1\|WP_003114812.1\|5445282_5445846_-\|peptidylprolyl-isomerase-A	gnl\|CDD\|182824	PRK10903, PRK10903, peptidylprolyl isomerase A.	5.29669e-93
NZ_CP015117.1\|WP_023082219.1\|5435126_5435312_-\|DUF2061-domain-containing-protein	gnl\|CDD\|225746	COG3205, COG3205, Predicted membrane protein [Function unknown].	1.7036e-27
NZ_CP015117.1\|WP_003091546.1\|5436988_5438644_+\|cation-acetate-symporter	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
NZ_CP015117.1\|WP_003091547.1\|5436680_5436992_+\|DUF485-domain-containing-protein	gnl\|CDD\|225704	COG3162, COG3162, Predicted membrane protein [Function unknown].	2.28294e-48
NZ_CP015117.1\|WP_003109184.1\|5443387_5445220_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.066e-156
NZ_CP015117.1\|WP_003116397.1\|5431786_5432644_-\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.4231e-96
NZ_CP015117.1\|WP_003114808.1\|5435605_5436463_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270357	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to betaine compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine and proline betaine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.52249e-117
NZ_CP015117.1\|WP_003114810.1\|5440529_5441156_+\|3'-5'-exonuclease	gnl\|CDD\|236391	PRK09145, PRK09145, 3'-5' exonuclease.	2.00701e-94

>NZ_CP015117.1|WP_003109182.1|5441264_5441423_+|DUF3309-domain-containing-protein
MSLGTILLIILILLLIGGLPVFPHSRNWGYGPSGIIGALLVVLLVLLLLGMI
>NZ_CP015117.1|WP_003114810.1|5440529_5441156_+|3'-5'-exonuclease
MNTMVKLPDSRWPGWRRRLYWWMHEAVEAEEVISLDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPPSLDAESIRIHKLRRADLEGQLQLEQALRQVLAFIGDRPLLGYYLSFDVAVLNRHLRQLLDRQLHNPSIEISSLYHRKVSRHFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALMFMRLLKGPAPKVIH
>NZ_CP015117.1|WP_003116398.1|5438733_5440533_+|cyclic-nucleotide-binding/CBS-domain-containing-protein
MPDSFNFASPPFDQLRPHQRETLKQALSVGYYAPGETLLEAGSAVPGLFVLLKGVVEERGDDGRVFAQYAADDLFDVRGLFSGSSKHRYLAIEESIVYELPASCFHQLCGENPGFARFFQADLAAKRQLAQRDGQNLAEFILTRIAREHLLPALEVEASLSLGDAARLQLSHGADALLVRLERDGPELGIVTRTDLMSAHFRDGRSELEAIGPLAHGPLASVELGDFLFDAMILMTRQRIERVAVTEDGQVIGLLHLTQVLSLFSTHSHVLALRIARADDLGDLRRCAETLDTLIATLAGNGIRLRFIMQLVSALNEQLLERLFELLLPPTLRGRCCLLVMGSEGRGEQLLKTDQDNALVLADDLPQEQALAMMQRFSAALLEFGYPPCPGGVMASRPEWCKPLAAWQAELRGTLLEGKPEQLLRLSILADAWPVAGNLQLFEPLRRQLRGFADGGERWLADIAAAALQFDTPLTFLGQLKTQDARLDLKRGGIFPIVHGIRTLALREGLETRGTLARIEALKRHKVLEARLADDLSESFELFLQLRLTRQLAGQRDGRQQGLDVSGMSRHDRDMLRYGLHVVKKFKQSVARQFHLETR
>NZ_CP015117.1|WP_003091546.1|5436988_5438644_+|cation-acetate-symporter
MIARLLAALGLAAFAPALWADALTGDVQRQPLNVSAIVMFVAFVGATLCITYWASKRNRSAADYYAAGGRITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQKQIRTLSACGSLVVVAFYLIAQMVGAGKLIELLFGLNYHVAVVLVGILMVLYVLFGGMLATTWVQIIKAVLLLSGASFMAIMVLKHVNFDVSTLFSEAIKVHPKGEAIMSPGGLVKDPISAFSLGFALMFGTAGLPHILMRFFTVSDAKEARKSVFYATGFIGYFYILTFIIGFGAILLVSTNPDFKDATGALIGGNNMAAVHLADAVGGSLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYASVFKGGKANEKDELRVSKMTTVALGVVAIVLGILFEKQNIAFMVGLAFSIAASCNFPVLLLSMYWKKLTTRGAMIGGWMGLITAVGLMVLGPTIWVQILGHEKAIYPYEYPALFSMIVAFVGIWFFSITDKSAAADEERARFFPQFIRSQTGLGASGAVAH
>NZ_CP015117.1|WP_003091547.1|5436680_5436992_+|DUF485-domain-containing-protein
MNDSIYQRIDTNPRFKELVAKRERFAWILSSIMLGLYVIFILLIAFQPQLLGARISPDSSVTWGIPMGVGLILAAFILTGLYVRRANGEFDSLNQEILKEAQQ
>NZ_CP015117.1|WP_003114808.1|5435605_5436463_+|glycine-betaine-ABC-transporter-substrate-binding-protein
MRMMRRLLCWSAGLAMSAAVGMAAAADKPVITIGYVDGWSDSVATTHVAAEVIREKLGYEVKLMPVAAGIMWQGVARGKLDAMLSAWLPGTHGAYYEKMKDKVVNLAINYPDARIGLIVPEYVSANSIADLQAQKDAFGGRVVGIDAGAGVMIKTDEAIKQYGLDYKLVASSGSGMIAELTRAENEKKPVVVTGWIPHWMFAKWKLKFLDDPKKVYGDTEHVDTVANPALEAKAKPVWEFLKKFGWKDGNEVGQVMLAIQEGAKPEDAAKQWVAANPGRVKDWVQ
>NZ_CP015117.1|WP_023082219.1|5435126_5435312_-|DUF2061-domain-containing-protein
MLKTLTFTVMHFIIAFSVAYALTGSIAVGGLVAAVEPLCNSVGFYFHEKIWKRFEKDGAPG
>NZ_CP015117.1|WP_016852631.1|5433591_5434953_-|alpha/beta-fold-hydrolase
MPHFLRFAALLGGLALGCANLAQARDVDAASYGYPLTNPFEATIATTPPELRPELPHSEDIDQKDYSLKLRPEREFALPDNFWPVKKLRYRLARQDHAAPLIFIIAGTGAHYASSFPEYLKKLFYQAGYHVVQLSSPTSWDFMASASRFATPGFSSDDADDLYRVMQAVRAQQRDLPVTDYYLTGYSLGALNAAFVSHLDESRRSFNFKKVLLLNPPVNLYTSVSNLDKLVETQVKGITDSRTFYEVVLSKLTRYFRQKGYVDINDAMLYDFQQSKQRLSNEEMAMLIGTSFRFSAADIAFTSDLVNRRGLITPPNYPINEGTSLEPFFKRALQCDFECYMTEQLIPMWRARYDGGSLTQLVNQVSLYKLQDYLHDSPKIAVMHNADDVILGPGDLGFLRRTFGERLTVYPYGGHCGNLNYKVNAQDMLDFFATPAAGQTKVASAALTQQAGN
>NZ_CP015117.1|WP_016852630.1|5432784_5433588_-|VacJ-family-lipoprotein
MSRTAHWMFALLLSAAASAQADEAAAPAELPPRQLDGDGFSRPLDQLKFNPGLDQREFERATLDALNMYDPWESWNRRVYHFNYRFDEWVFLPVVRGYEYVTPHFVRSGVSNFFDNLGDVPNLLNNLAQLKGKAAMETTARLLFNTTFGVLGLWDPATRMGLHKRSEDFGQTLGLYGVGSGPYLVLPILGPSNLRDTGGLVVDYVGEYQVNYLNVPQASGDHPEITALRVVDKRYNTSFRYGQMNSPFEYEKLRYIYTEARKLQIAE
>NZ_CP015117.1|WP_003116397.1|5431786_5432644_-|pirin-family-protein
MTRYRDVLELHTGHPASDGAGVRLTRVIGGPSPERFDPFLMLDQFDTQNPDDYVAGFPSHPHRGFETVTYMLEGRMRHEDHLGNRGLLKPGGVQWMTAAHGIIHSEMPEQVEGAMRGFQLWVNLPAKNKLAPAGYRDIEPEDVPRLETAGGVKVTVIAGRFDDGQAQQIGAVERPDTEPHYYDLQLPAGGRIAPRLPDGHRVLLYVYEGSLTVEGERPVEIATNRLARLSEEGELSLRSEAGARVLVLAGKPLREPIVQYGPFVMNSREEIEQALRDYRDGVLAV
>NZ_CP015117.1|WP_003114811.1|5441682_5442807_+|GNAT-family-N-acetyltransferase
MPIQTLATLADIDAAEWDALLPPAQPFLRHAFLSALEDSHSVTPATGWRPAHRVLRDPQGRLCAALPAYVKAHSYGEYVFDWSWADACQRAGIRYYPKLLVGVPFTPVAGARLLGEDEGLQGLLASLGEEAEASGLSSIHVNFTDARADTLLAARDGWLERLGCQYHWHNRGYRDFQDFLEALSSRKRKQLRKEREQVGGQGIEFEWREGGQLSELEWDFVYLCYANTYLVRDRDPYLSREFFGLLAERMPEAIRVVFAHQRGKPVAMAFSLVAGDTLYGRYWGCLAEFDRLHFETCFYQGLEFAIGAGLARFDAGAQGEHKLIRGFEPVLTRSWHYLAHPGLRDAVAQFLEQERAGVRAYAEEAHGLLPYRQA
>NZ_CP015117.1|WP_003091540.1|5442839_5443106_-|DUF2790-domain-containing-protein
MKLASVVSAVITSLAPMAFAQDVDKDPGRGLPVEEYHYGMQLDVKNVLHRTDNSTRTGVVPVTVVYEDHSGELHKIRFLEWGGSTSNG
>NZ_CP015117.1|WP_003109184.1|5443387_5445220_-|ABC-transporter-ATP-binding-protein
MLYRRFERLIDPFRSASERMPPSEVLRFYVYFLRQVWPVFLALLVVGLIVALIEVALFSYLGRIVDLAQSTPSAEFFRVHANELIWMAVVALVLRPLFNALHDMLVHQSINPSMTNLIRWQNHRYVLKQSLGFFQNDFAGRIAQRIMQTGNSLRDSAVQVVDALWHVLIYTVSALVLFAEADWRLMIPLVLWVFAYVGALAYFVPQVKRRSVEASDSRSKLMGRIVDGYTNITTLKLFAHTRQEEDYAREAIGDQTLKSQRAGRVVTSMDVTITVMNGVLITGTTGLALWLWSQELISVGAIALATGLVIRINNMSGWIMWVVGGIFENIGQVQDGMQTIALPRKVVDREDAQPLRVERGEVEFEHIAFHYGKGSGVIQGLDLKVRPGEKIGLVGPSGAGKSTLVNLLLRLYDLESGRILVDGQDIAGVTQESLRAQIGMVTQDTSLLHRSIRDNLLYGRPGASDAELMEAVRKARADEFIPLLSDAEGRRGFDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVESAIQESLETLMQGKTVIAIAHRLSTIARMDRLVVLDKGHIAESGTHAELLAHGGLYARLWQHQTGGFVGVD
>NZ_CP015117.1|WP_003114812.1|5445282_5445846_-|peptidylprolyl-isomerase-A
MLKRLLIAACTLLFAGSLLAATPAAKPHVLIATSLGEIEVELDPAKAPISVKNFLEYVDSGYYDGTLFHRVIPGFMVQTGGFSAGMQEKKTRAPIKNEADNGLLNERGTLAMARTGVVDSATSQFFINLTDNDFLNHGARDFGYAVFGKVVRGMGVVDQIAKVPTTRRNGFADVPSDDVVILSAKRL
>NZ_CP015117.1|WP_003114813.1|5445827_5446655_-|alpha/beta-hydrolase
MPDFQHRDCTLVYDDHPGPTERAPVLLLHGLGSSARDWEYQLPALLGRYRLLVPDLRGHGRSGKPRGGYSMAGFAEDCAALLDRLGCGPVHLVGISMGGMIGFQLACDRPDLLRSLTIVNSTPEVIPRKPREHLEVAKRKLLSRLLSLRTIGRALGRLLFPKAEQAGLREKIEARWAENDKRAYLASLDAIIGWGVQERLAEIACPTLVISADRDYTPVSLKQAYCERIADARLVVVEDSRHATPMDQPEIFNTTLLGFLADIDKTKEQPCSNVS
>NZ_CP015117.1|WP_003091534.1|5446661_5447591_-|LysR-family-transcriptional-regulator
MKAPRVTLDQWRTLQAVVDHGGFAQAAEALHRSQSSISYTVARMQEQLGVPLLRIDGRKAVLTEAGEVLLRRSRQLVKQAGQLEELAHHMEQGWEPEVRLVVDAAYPTARIVRSLSAFMPQSRGCRVLLREEVLSGVEEALIQGAADLAISGLIIPGHLGADLSVVEFVAVAHPDHPLHRLQRELTHQDLETQMQVVIRDSGRLQPRDHGWLGAEQRWTVGSLATAATFVGNGLGFAWLPRHIIERELQSGQLKPLPLSQGGVRQSRFYLYTNKEKPLGPASQILMEMLKSFANVPLNAPFAAPEPAAE
>NZ_CP015117.1|WP_003091533.1|5447790_5448108_+|hypothetical-protein
MKRLCCFALSLLPLSAFAYPIEVDPQLNGTEVSYSTQDIGRDMGAILLTNLGGQAAECTAVFRNGPETPKVRKGVIQPGQNSNFTAQFGRDIIKLRIKLTCKIAK
>NZ_CP015117.1|WP_003114814.1|5448254_5448896_+|FMN-dependent-NADH-azoreductase
MSRVLVIESSARQRGSVSRLLTAEFISHWKIAHPADRFQVRDLAREPLPHLDELLLGAWTTPCDGHSAAERRALERSNRLTEELRMADVLVLAAPMYNFAIPSSLKSWFDHVLRAGLTFRYAEQGPEGLLQGKRAFVLTARGGIYAGGGLDHQEPYLRQVLGFVGIHDVTFIHAEGMNMGPEFREKGLARARERMRQALETDTSLCVPLPTLR
>NZ_CP015117.1|WP_003116401.1|5449000_5449900_-|DMT-family-transporter
MNRRSALAALHGGALLFGLTGVFGKLASASPGVIVFGRALFAVLALGLFARLAGQAWRALGPAQWLRLALCGLLLAGHWVSFFIAVKTAGVAIATLGFASFPAFTVILEGLLFRERIHLAEGLLVVLVSLGLVLVTPNFDLASGATLGLLWAILSGLLFALLSLANRSNSGQVGPVQAALWQNLVVALCLLPFAVGELPALPALDWLWLALLGVFCTGLAHSLFVASLAVVKARTAALVFALEPVYGIAFAWLLFHETPGPRMFLGGALIILAIVLSARLGARGRKTAVGDERGDPERA
>NZ_CP015117.1|WP_003109191.1|5449909_5450245_-|tRNA-binding-protein
MDIIEWQDFERVELRVGTILSAAPNPKARKPAYVLEVDLGPLGLRTSSAQLTAHYQAEQLVGRQVLCVCNFAPKQIAGVRSEVLVTGVYDSEDKVVLAGFDKPLPNGARLA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP015117_5	5.1\|5441470\|52\|NZ_CP015117\|CRISPRCasFinder	5441470-5441521	52	NZ_CP042268	Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence	63791-63842	0	1.0

1. spacer 5.1|5441470|52|NZ_CP015117|CRISPRCasFinder matches to NZ_CP042268 (Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence) position: , mismatch: 0, identity: 1.0

tccggcgttattcgccctacgcggagggttcccagctttcgctccgccgttg	CRISPR spacer
tccggcgttattcgccctacgcggagggttcccagctttcgctccgccgttg	Protospacer
****************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1824201 : 1904342

Pseudomonas_virus(54.72%)

holin,plate,portal,head,capsid,transposase,terminase,integrase,tail

attL 1858528:1858546|attR 1908465:1908483

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016446187.1\|1824201_1824378_+\|transposase	transposase	NA	NA	NA	NA
WP_016446188.1\|1824491_1824869_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_016852012.1\|1825470_1826040_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_016852013.1\|1826134_1828984_+	heat shock survival AAA family ATPase ClpK	K4FB40	Cronobacter_phage	4.5e-128	40.8
WP_023084997.1\|1829000_1830431_+	cardiolipin synthase	NA	NA	NA	NA
WP_016852015.1\|1830458_1832288_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	C7U047	Ostreococcus_tauri_virus	2.6e-105	41.3
WP_016852016.1\|1832366_1832825_+	small heat shock protein sHSP20-GI	NA	NA	NA	NA
WP_001022485.1\|1832847_1833762_+	heat resistance protein YfdX1	NA	NA	NA	NA
WP_016852017.1\|1833864_1834752_+	heat resistance protein YfdX2	NA	NA	NA	NA
WP_016852018.1\|1834848_1835460_+	heat resistance membrane protein HdeD-GI	NA	NA	NA	NA
WP_003141080.1\|1835539_1836685_+	hypothetical protein	NA	NA	NA	NA
WP_012761376.1\|1836674_1837115_+	heat resistance system thioredoxin Trx-GI	A0A1J0GW78	Streptomyces_phage	5.8e-11	38.5
WP_003141082.1\|1837118_1838834_+	heat resistance system K+/H+ antiporter KefB-GI	NA	NA	NA	NA
WP_023084996.1\|1838830_1839262_+	phosphate-starvation-inducible PsiE family protein	NA	NA	NA	NA
WP_004574802.1\|1840109_1840790_+	cupin	NA	NA	NA	NA
WP_004574803.1\|1840786_1841371_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_004574804.1\|1841430_1842207_+	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	2.0e-14	28.2
WP_004574805.1\|1842221_1842788_+	OsmC family protein	NA	NA	NA	NA
WP_003465068.1\|1843077_1844757_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_003465065.1\|1844759_1845668_+	AAA family ATPase	NA	NA	NA	NA
WP_003465063.1\|1845664_1846882_+	TniQ family protein	NA	NA	NA	NA
WP_000904941.1\|1846942_1847557_+	recombinase family protein	A0A0C4UR34	Shigella_phage	1.3e-37	51.9
WP_001087809.1\|1847609_1847846_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_003465059.1\|1847842_1848208_-	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000136268.1\|1848223_1849870_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.0e-39	28.3
WP_000654684.1\|1849866_1850112_-	mercury resistance system transport protein MerF	NA	NA	NA	NA
WP_000735441.1\|1850114_1850390_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_001294667.1\|1850405_1850756_-	mercuric ion transporter MerT	NA	NA	NA	NA
WP_000429838.1\|1850827_1851262_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_016851620.1\|1851679_1852144_+	hypothetical protein	NA	NA	NA	NA
WP_014003957.1\|1852146_1852707_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.1e-59	100.0
WP_011005944.1\|1852710_1855677_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	97.6
WP_012761372.1\|1856066_1857218_+	PDZ domain-containing protein	A0A1B1IT49	uncultured_Mediterranean_phage	2.8e-28	31.0
WP_003141085.1\|1857450_1858359_+	LysR family transcriptional regulator	NA	NA	NA	NA
1858528:1858546	attL	NA	NA	NA	NA
WP_016852020.1\|1859342_1860068_+	zeta toxin family protein	NA	NA	NA	NA
WP_016852021.1\|1860305_1861361_-\|portal	phage portal protein	Q9ZXM6	Pseudomonas_virus	1.4e-196	96.9
WP_025986384.1\|1861360_1863121_-\|terminase	terminase ATPase subunit family protein	Q9ZXM5	Pseudomonas_virus	0.0e+00	99.8
WP_016852023.1\|1863276_1864098_+\|capsid	GPO family capsid scaffolding protein	Q9ZXM4	Pseudomonas_virus	1.5e-129	93.0
WP_016852024.1\|1864133_1865150_+\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	6.6e-191	99.1
WP_016852025.1\|1865155_1865857_+\|terminase	terminase endonuclease subunit	Q9ZXM2	Pseudomonas_virus	4.8e-124	99.1
WP_016852026.1\|1865960_1866422_+\|head	head completion/stabilization protein	Q9ZXM1	Pseudomonas_virus	3.1e-79	98.0
WP_003098378.1\|1866421_1866634_+\|tail	tail protein X	Q9ZXL9	Pseudomonas_virus	4.9e-32	94.1
WP_003098379.1\|1866658_1867012_+	hypothetical protein	Q9ZXL8	Pseudomonas_virus	6.0e-59	100.0
WP_016852027.1\|1867013_1867286_+\|holin	phage holin family protein	Q9ZXL7	Pseudomonas_virus	1.2e-38	98.9
WP_016852028.1\|1867282_1868089_+	DUF3380 domain-containing protein	Q9ZXL6	Pseudomonas_virus	2.6e-142	96.5
WP_016852029.1\|1868085_1868328_+	hypothetical protein	NA	NA	NA	NA
WP_016852030.1\|1868324_1868786_+	peptidase	Q9ZXL5	Pseudomonas_virus	5.3e-63	87.6
WP_016852031.1\|1868863_1869400_+\|tail	phage tail protein	Q9ZXL3	Pseudomonas_virus	7.9e-95	98.9
WP_016852032.1\|1869392_1869851_+	phage virion morphogenesis protein	Q9ZXL2	Pseudomonas_virus	7.0e-68	89.5
WP_016852033.1\|1869920_1870493_+\|plate	phage baseplate assembly protein V	Q9ZXL0	Pseudomonas_virus	3.6e-93	98.9
WP_016852034.1\|1870489_1870834_+\|plate	phage baseplate protein	Q9ZXK9	Pseudomonas_virus	7.9e-56	97.4
WP_016852035.1\|1870830_1871745_+\|plate	baseplate assembly protein	Q9ZXK8	Pseudomonas_virus	1.0e-163	99.3
WP_016852036.1\|1871744_1872281_+\|tail	phage tail protein I	Q9ZXK7	Pseudomonas_virus	1.5e-98	98.9
WP_016852037.1\|1872282_1874673_+	hypothetical protein	Q9ZXK6	Pseudomonas_virus	0.0e+00	89.2
WP_016852038.1\|1874724_1875186_+	hypothetical protein	Q9ZXK5	Pseudomonas_virus	1.1e-36	53.9
WP_016852039.1\|1875276_1876452_+\|tail	phage tail sheath protein	Q9ZXK4	Pseudomonas_virus	3.0e-219	98.5
WP_016852040.1\|1876508_1877024_+\|tail	phage major tail tube protein	Q9ZXK3	Pseudomonas_virus	7.4e-90	94.7
WP_016852041.1\|1877078_1877408_+\|tail	phage tail assembly protein	Q9ZXK2	Pseudomonas_virus	1.5e-48	95.4
WP_003098394.1\|1877416_1877536_+\|tail	GpE family phage tail protein	Q9ZXK1	Pseudomonas_virus	1.8e-15	100.0
WP_016852042.1\|1877525_1880285_+\|tail	phage tail tape measure protein	Q9ZXK0	Pseudomonas_virus	0.0e+00	92.6
WP_003098399.1\|1880290_1880731_+\|tail	phage tail protein	Q9ZXJ9	Pseudomonas_virus	1.8e-76	99.3
WP_016852043.1\|1880727_1882002_+	phage late control D family protein	Q9ZXJ8	Pseudomonas_virus	9.3e-235	97.4
WP_031637712.1\|1882047_1882617_-	hypothetical protein	S5FXQ0	Shigella_phage	4.9e-18	40.5
WP_153901673.1\|1882621_1883623_-	hypothetical protein	NA	NA	NA	NA
WP_100209530.1\|1883988_1884420_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_033936701.1\|1884485_1884716_+	phage-associated protein, BcepMu gp16 family	NA	NA	NA	NA
WP_016852046.1\|1884715_1885249_+	hypothetical protein	Q9ZXJ2	Pseudomonas_virus	9.1e-75	96.7
WP_016852047.1\|1885245_1885524_+	ogr/Delta-like zinc finger family protein	Q9ZXJ1	Pseudomonas_virus	5.5e-15	47.3
WP_016852048.1\|1885520_1885880_+	hypothetical protein	A0A2H4J947	uncultured_Caudovirales_phage	1.0e-13	44.4
WP_016852049.1\|1885947_1886181_+	hypothetical protein	NA	NA	NA	NA
WP_016852050.1\|1886199_1888917_+	DUF927 domain-containing protein	A0A2H4J936	uncultured_Caudovirales_phage	1.5e-277	51.5
WP_016852052.1\|1889163_1889895_+	hypothetical protein	X5IGG9	Pseudomonas_phage	9.3e-30	34.3
WP_016852053.1\|1889989_1890247_+	hypothetical protein	Q9ZXI7	Pseudomonas_virus	8.6e-23	56.5
WP_016852054.1\|1890316_1890757_+	hypothetical protein	NA	NA	NA	NA
WP_016852056.1\|1890922_1892833_+	DNA methyltransferase	A0A0U1T6D1	Pseudomonas_phage	1.5e-284	94.2
WP_016852057.1\|1892829_1894062_+	phosphoadenosine phosphosulfate reductase family protein	R9TRT5	Rhizobium_phage	4.7e-175	71.6
WP_016852059.1\|1894245_1894614_+	ASCH domain-containing protein	A0A291AUQ6	Sinorhizobium_phage	2.7e-30	50.4
WP_003098423.1\|1894806_1895010_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_016852061.1\|1895016_1896219_-\|integrase	integrase family protein	A0A248SL35	Klebsiella_phage	4.9e-36	30.9
WP_003123043.1\|1896553_1896901_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_003114155.1\|1896910_1897162_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_016852062.1\|1897375_1898359_-\|integrase	tyrosine-type recombinase/integrase	Q56VN7	Pseudomonas_phage	6.8e-92	52.3
WP_003115206.1\|1898358_1899651_-	hypothetical protein	Q56VN8	Pseudomonas_phage	2.8e-247	94.2
WP_023093179.1\|1899909_1901172_-	hypothetical protein	Q56VN9	Pseudomonas_phage	1.3e-116	55.2
WP_003159569.1\|1901173_1901524_-	DUF2523 domain-containing protein	Q56VP0	Pseudomonas_phage	5.5e-20	41.1
WP_063174111.1\|1901533_1902136_-	hypothetical protein	NA	NA	NA	NA
WP_023082694.1\|1902791_1903010_-	hypothetical protein	NA	NA	NA	NA
WP_003124954.1\|1903023_1903275_-	hypothetical protein	NA	NA	NA	NA
WP_003115130.1\|1903286_1903379_-	hypothetical protein	Q56VP4	Pseudomonas_phage	7.3e-09	100.0
WP_003125073.1\|1903395_1903830_-	hypothetical protein	Q56VP5	Pseudomonas_phage	3.0e-60	86.8
WP_063174112.1\|1903964_1904342_-	hypothetical protein	Q56VP6	Pseudomonas_phage	1.3e-59	96.8
1908465:1908483	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2494876 : 2550012

Pseudomonas_phage(52.94%)

tRNA,integrase,coat

attL 2522323:2522339|attR 2554073:2554154

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003099340.1\|2494876_2495425_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_003135089.1\|2495455_2495989_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_016852143.1\|2495988_2496531_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_003121045.1\|2496549_2497338_+	molecular chaperone	NA	NA	NA	NA
WP_016852144.1\|2497354_2499727_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_003099330.1\|2499723_2500671_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_003099328.1\|2500672_2502046_-	MFS transporter	NA	NA	NA	NA
WP_003099324.1\|2502325_2503348_-	ferrochelatase	NA	NA	NA	NA
WP_016852145.1\|2503344_2504262_-	TIGR01777 family protein	NA	NA	NA	NA
WP_003099318.1\|2504675_2505659_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_003099314.1\|2505811_2506768_+	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA
WP_003094990.1\|2506777_2507677_+	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	8.5e-17	39.1
WP_003121048.1\|2507673_2509119_+	deoxyribodipyrimidine photo-lyase	A0A167RC11	Powai_lake_megavirus	1.8e-45	27.8
WP_003099307.1\|2509244_2509766_-	acyloxyacyl hydrolase	A0A2H4J0I5	uncultured_Caudovirales_phage	1.4e-59	69.8
WP_003099300.1\|2509899_2510697_-	glutamate racemase	NA	NA	NA	NA
WP_003099296.1\|2510686_2511445_-	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA
WP_003099293.1\|2511438_2512269_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_003099290.1\|2512270_2513353_-	peptide chain release factor 1	A0A0S4KWG0	Pseudomonas_phage	5.6e-07	48.3
WP_016852146.1\|2513370_2514639_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_016852147.1\|2514782_2516555_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_016852148.1\|2516559_2517177_+	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_003099284.1\|2517178_2518027_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_003099281.1\|2518193_2519135_+	ribose-phosphate pyrophosphokinase	A0A1V0SHF7	Hokovirus	4.1e-46	35.4
WP_003099279.1\|2519251_2519866_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA
WP_003099278.1\|2519907_2520492_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_003099270.1\|2520532_2521633_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_003161389.1\|2521838_2523050_+\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1B0VMI6	Pseudomonas_phage	1.1e-56	34.4
2522323:2522339	attL	NA	NA	NA	NA
WP_003161388.1\|2523311_2524412_+	Fic family protein	NA	NA	NA	NA
2522323:2522339	attL	NA	NA	NA	NA
WP_003161387.1\|2524421_2529695_+	DEAD/DEAH box helicase	A0A1B1IUF6	uncultured_Mediterranean_phage	8.7e-61	22.9
WP_003161386.1\|2529701_2532485_+	DEAD/DEAH box helicase	A0A1B1IUI1	uncultured_Mediterranean_phage	2.2e-39	26.7
WP_003161385.1\|2532509_2536982_+	N-6 DNA methylase	A0A1B1IUC6	uncultured_Mediterranean_phage	5.7e-37	23.7
WP_016852149.1\|2537271_2538915_+	hypothetical protein	NA	NA	NA	NA
WP_003161383.1\|2538964_2539732_+	HNH endonuclease	NA	NA	NA	NA
WP_016852151.1\|2539899_2540763_-\|integrase	integrase	NA	NA	NA	NA
WP_123789187.1\|2542345_2542756_+	hypothetical protein	NA	NA	NA	NA
WP_016852152.1\|2542736_2543738_-\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	2.9e-74	46.5
2543217:2543233	attR	NA	NA	NA	NA
WP_019416334.1\|2543734_2545027_-	hypothetical protein	Q56VN8	Pseudomonas_phage	8.8e-241	92.0
2543217:2543233	attR	NA	NA	NA	NA
WP_023124218.1\|2545285_2546548_-	hypothetical protein	Q56VN9	Pseudomonas_phage	1.3e-116	55.2
WP_003159569.1\|2546549_2546900_-	DUF2523 domain-containing protein	Q56VP0	Pseudomonas_phage	5.5e-20	41.1
WP_031634255.1\|2546909_2547512_-	hypothetical protein	NA	NA	NA	NA
WP_023082694.1\|2548167_2548386_-	hypothetical protein	NA	NA	NA	NA
WP_003124954.1\|2548399_2548651_-	hypothetical protein	NA	NA	NA	NA
WP_003115130.1\|2548662_2548755_-	hypothetical protein	Q56VP4	Pseudomonas_phage	7.3e-09	100.0
WP_003125073.1\|2548771_2549206_-	hypothetical protein	Q56VP5	Pseudomonas_phage	3.0e-60	86.8
WP_031634253.1\|2549340_2549718_-	hypothetical protein	Q56VP6	Pseudomonas_phage	9.9e-60	96.8
WP_023083237.1\|2549721_2550012_-	DUF5447 family protein	Q56VP7	Pseudomonas_phage	4.3e-55	97.9
2554073:2554154	attR	NA	NA	NA	NA

DBSCAN-SWA_3

4237649 : 4290429

uncultured_Caudovirales_phage(28.0%)

tRNA,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009875776.1\|4237649_4238675_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	8.3e-109	58.1
WP_016852408.1\|4238753_4239323_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003099587.1\|4239406_4239760_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_003099585.1\|4239750_4240293_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_003099584.1\|4240265_4241498_-	multifunctional CCA addition/repair protein	A0A076G5T8	Escherichia_phage	2.6e-77	43.1
WP_016252919.1\|4241541_4242048_-	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_003099581.1\|4242141_4243695_-	SpoVR family protein	NA	NA	NA	NA
WP_003099579.1\|4243691_4244963_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	4.2e-09	37.2
WP_003085078.1\|4245063_4246986_-	PrkA family serine protein kinase	NA	NA	NA	NA
WP_003099577.1\|4247264_4247597_-	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_003121837.1\|4247640_4248492_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	A0A2H4J0P0	uncultured_Caudovirales_phage	1.1e-08	33.3
WP_003085085.1\|4248491_4248872_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_003161932.1\|4248908_4249715_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_003459378.1\|4249830_4250817_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_003109024.1\|4250813_4252106_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_016852409.1\|4252086_4254876_-	LPS-assembly protein LptD	NA	NA	NA	NA
WP_003099554.1\|4255002_4256019_+	phosphotransferase	NA	NA	NA	NA
WP_016852410.1\|4256015_4256690_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_016852411.1\|4256691_4257450_+	DnaJ domain-containing protein	NA	NA	NA	NA
WP_012613533.1\|4257450_4258512_-	DUF3530 family protein	NA	NA	NA	NA
WP_009875783.1\|4258663_4261057_+	PAS domain S-box protein	NA	NA	NA	NA
WP_003085103.1\|4261102_4261735_+	response regulator transcription factor	NA	NA	NA	NA
WP_003085106.1\|4261863_4262898_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_003085109.1\|4263131_4264241_+	polyamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.8e-28	34.4
WP_003099539.1\|4264296_4265343_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003109044.1\|4265457_4266705_+	ABC transporter permease	NA	NA	NA	NA
WP_003099535.1\|4266810_4267641_+	ABC transporter permease	NA	NA	NA	NA
WP_003085122.1\|4267764_4268439_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_003099532.1\|4268438_4269257_+	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_016852412.1\|4269329_4270808_+	anthranilate synthase component I	NA	NA	NA	NA
WP_003121843.1\|4271125_4271440_-	transcriptional regulator	NA	NA	NA	NA
WP_003113202.1\|4271539_4272310_-	helix-turn-helix transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	1.4e-71	59.1
WP_003085132.1\|4272767_4272968_+	repressor PtrB	W6ATC1	Enterobacter_phage	3.7e-05	58.3
WP_003459419.1\|4273015_4273375_+	hypothetical protein	NA	NA	NA	NA
WP_003118908.1\|4273737_4274187_+	hypothetical protein	B5TK61	Pseudomonas_phage	5.0e-26	53.3
WP_003101620.1\|4274208_4274724_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	1.8e-32	43.4
WP_016852413.1\|4274720_4275278_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	1.3e-44	70.3
WP_003085143.1\|4275430_4275757_+	hypothetical protein	A0A2H4JA09	uncultured_Caudovirales_phage	3.2e-30	60.2
WP_003161928.1\|4275753_4276641_+	bacteriophage protein	S4TNY7	Salmonella_phage	4.1e-88	59.8
WP_003118911.1\|4276633_4277167_+\|tail	phage tail protein I	Q9ZXK7	Pseudomonas_virus	3.9e-62	64.6
WP_003161927.1\|4277168_4279274_+\|tail	phage tail fiber protein	Q9ZXK6	Pseudomonas_virus	3.0e-222	52.7
WP_016852415.1\|4279281_4279722_+	hypothetical protein	NA	NA	NA	NA
WP_003121848.1\|4279764_4280925_+\|tail	phage tail sheath family protein	Q38068	Phage_PS17	1.2e-188	83.4
WP_016852416.1\|4280937_4281441_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	1.8e-64	72.8
WP_003085178.1\|4281455_4281800_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_019416282.1\|4281969_4284207_+\|tail	phage tail length tape measure protein	NA	NA	NA	NA
WP_003113194.1\|4284216_4285089_+	hypothetical protein	A0A2H4J875	uncultured_Caudovirales_phage	2.5e-74	51.4
WP_003101635.1\|4285063_4285270_+	hypothetical protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	2.3e-18	64.2
WP_003113193.1\|4285327_4286317_+	phage late control D family protein	A0A2H4JBF6	uncultured_Caudovirales_phage	7.5e-107	55.8
WP_003113192.1\|4286349_4286979_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	1.6e-86	78.0
WP_003121852.1\|4286975_4287338_+	hypothetical protein	H2BDA0	Pseudomonas_phage	4.2e-15	47.9
WP_003118919.1\|4287334_4287592_+	hypothetical protein	A0A125RNP3	Pseudomonas_phage	8.3e-18	64.6
WP_003113175.1\|4287939_4288545_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.6e-75	66.3
WP_003085203.1\|4288546_4289596_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.8e-111	57.8
WP_003085205.1\|4289592_4290429_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.1e-70	56.9

DBSCAN-SWA_4

4388363 : 4431750

Pseudomonas_phage(94.55%)

transposase,integrase,head

attL 4393927:4393943|attR 4397514:4397530

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003127781.1\|4388363_4388732_-	hypothetical protein	J9SGX4	Pseudomonas_phage	1.1e-63	100.0
WP_003117363.1\|4388728_4389277_-	hypothetical protein	J9RWB3	Pseudomonas_phage	2.1e-98	100.0
WP_015649391.1\|4389276_4389843_-	regulatory protein GemA	J9SVT5	Pseudomonas_phage	2.1e-101	99.5
WP_016852433.1\|4389829_4390297_-	hypothetical protein	J9STM8	Pseudomonas_phage	8.5e-77	100.0
WP_016852434.1\|4390296_4390488_-	hypothetical protein	J9RW45	Pseudomonas_phage	5.0e-28	100.0
WP_016852435.1\|4390489_4391179_-	DUF2786 domain-containing protein	Q5ZR11	Pseudomonas_phage	4.2e-125	98.7
WP_016852436.1\|4391180_4391804_-	DUF3164 family protein	Q5ZR10	Pseudomonas_phage	1.3e-109	99.5
WP_016852437.1\|4391796_4391997_-	hypothetical protein	J9SVU3	Pseudomonas_phage	6.7e-31	97.0
WP_016852438.1\|4391989_4392523_-	hypothetical protein	J9STN6	Pseudomonas_phage	3.3e-93	98.9
WP_016852439.1\|4392512_4393193_-	hypothetical protein	J9SNC1	Pseudomonas_phage	2.4e-128	98.7
WP_014603990.1\|4393192_4393477_-	hypothetical protein	J9SGZ7	Pseudomonas_phage	3.4e-44	100.0
WP_016852440.1\|4393473_4393815_-	hypothetical protein	J9RWC3	Pseudomonas_phage	3.5e-56	99.1
WP_016852441.1\|4393816_4394983_-	AAA family ATPase	J9SVV1	Pseudomonas_phage	1.0e-216	100.0
4393927:4393943	attL	NA	NA	NA	NA
WP_016852442.1\|4394982_4396767_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	J9SGQ3	Pseudomonas_phage	0.0e+00	98.5
WP_023101705.1\|4396770_4397745_-	hypothetical protein	J9RW58	Pseudomonas_phage	8.9e-153	97.8
4397514:4397530	attR	NA	NA	NA	NA
WP_003142307.1\|4397754_4398069_-	hypothetical protein	J9SUN0	Pseudomonas_phage	2.9e-49	98.1
WP_003142306.1\|4398065_4398326_-	hypothetical protein	J9RWD0	Pseudomonas_phage	1.5e-38	95.3
WP_010791820.1\|4398318_4398807_-	hypothetical protein	J9SNL8	Pseudomonas_phage	2.8e-91	99.4
WP_015649394.1\|4398930_4399155_+	hypothetical protein	NA	NA	NA	NA
WP_003142304.1\|4399439_4399670_-	DNA-binding protein	J9RW65	Pseudomonas_phage	2.5e-37	100.0
WP_015649395.1\|4399776_4400115_+	helix-turn-helix domain-containing protein	J9SH16	Pseudomonas_phage	2.4e-12	82.6
WP_010791819.1\|4400131_4400635_+	hypothetical protein	J9RWD8	Pseudomonas_phage	4.0e-80	92.8
WP_003094225.1\|4400825_4401083_+	membrane protein	A0A0S4L5C0	Pseudomonas_phage	7.2e-38	100.0
WP_016852445.1\|4401240_4401870_+	transglycosylase SLT domain-containing protein	J9SH25	Pseudomonas_phage	1.9e-119	98.6
WP_015649412.1\|4402071_4402695_+	hypothetical protein	J9SVX5	Pseudomonas_phage	3.6e-99	90.3
WP_003117315.1\|4402694_4403015_+	DUF2730 family protein	J9STR5	Pseudomonas_phage	5.1e-49	100.0
WP_003121465.1\|4403011_4403314_+	hypothetical protein	J9SNG3	Pseudomonas_phage	4.1e-48	99.0
WP_003121466.1\|4403316_4403865_+	DUF3486 family protein	J9SH37	Pseudomonas_phage	6.4e-76	98.9
WP_003138156.1\|4403866_4405540_+	hypothetical protein	J9RWF2	Pseudomonas_phage	0.0e+00	99.5
WP_025986355.1\|4405542_4407108_+	DUF935 domain-containing protein	J9SVY0	Pseudomonas_phage	1.1e-285	96.0
WP_016852447.1\|4407097_4408336_+	hypothetical protein	J9STS2	Pseudomonas_phage	5.8e-242	99.5
WP_016852448.1\|4408337_4408913_+	phage virion morphogenesis protein	J9SNH3	Pseudomonas_phage	2.9e-103	99.0
WP_003138161.1\|4409123_4410233_+	hypothetical protein	J9SH47	Pseudomonas_phage	2.9e-200	99.2
WP_003121593.1\|4410238_4410643_+	hypothetical protein	J9RWG0	Pseudomonas_phage	1.8e-67	100.0
WP_003127513.1\|4410657_4411554_+\|head	head protein	J9SVY7	Pseudomonas_phage	1.3e-171	100.0
WP_003121493.1\|4411785_4412001_+	hypothetical protein	J9STT1	Pseudomonas_phage	1.5e-33	100.0
WP_003121492.1\|4412003_4412519_+	DUF1320 domain-containing protein	J9SNI4	Pseudomonas_phage	3.5e-92	100.0
WP_003138162.1\|4412515_4412968_+	hypothetical protein	J9SH57	Pseudomonas_phage	2.1e-80	99.3
WP_003127509.1\|4412964_4413168_+	hypothetical protein	J9RWG5	Pseudomonas_phage	1.7e-29	100.0
WP_016852449.1\|4413174_4413915_+	hypothetical protein	J9SVZ4	Pseudomonas_phage	1.8e-134	98.8
WP_016852450.1\|4413917_4414400_+	hypothetical protein	J9STT8	Pseudomonas_phage	2.8e-83	99.4
WP_049967619.1\|4414354_4414537_-	hypothetical protein	J9SNJ6	Pseudomonas_phage	1.2e-26	100.0
WP_016852451.1\|4414653_4418295_+	tape measure protein	J9SH65	Pseudomonas_phage	0.0e+00	92.3
WP_016852452.1\|4418294_4419251_+	hypothetical protein	J9RWP3	Pseudomonas_phage	3.1e-182	95.0
WP_016852453.1\|4419253_4420177_+	hypothetical protein	A0A0S4L5N6	Pseudomonas_phage	3.3e-181	98.7
WP_016852454.1\|4420179_4421886_+	hypothetical protein	J9STL4	Pseudomonas_phage	0.0e+00	97.5
WP_016852455.1\|4421872_4422691_+	DUF2163 domain-containing protein	J9SN93	Pseudomonas_phage	3.8e-165	99.3
WP_003094285.1\|4422700_4422931_+	hypothetical protein	Q5ZQW1	Pseudomonas_phage	1.2e-36	100.0
WP_003094286.1\|4423144_4425355_+	hypothetical protein	Q5ZQV9	Pseudomonas_phage	0.0e+00	97.8
WP_003094288.1\|4425351_4426500_+	hypothetical protein	J9SP76	Pseudomonas_phage	9.0e-213	92.9
WP_003094290.1\|4426496_4426787_+	hypothetical protein	A0A0A7DJU8	Pseudomonas_phage	2.6e-44	95.7
WP_071534095.1\|4426925_4427117_+	Com family DNA-binding transcriptional regulator	Q5ZQW8	Pseudomonas_phage	3.0e-20	74.6
WP_003094291.1\|4427086_4427881_+	DNA adenine methylase	Q5ZQW7	Pseudomonas_phage	1.8e-143	90.2
WP_003121928.1\|4427999_4428806_+	APH(3')-II family aminoglycoside O-phosphotransferase	Q75ZG1	Hepacivirus	1.9e-71	53.5
WP_003101275.1\|4428916_4429486_-	hypothetical protein	A0A2L0V127	Agrobacterium_phage	1.0e-07	28.6
WP_003121929.1\|4429563_4431750_-	GAF domain-containing protein	B5LWN8	Feldmannia_species_virus	4.3e-22	23.0

DBSCAN-SWA_5

4929027 : 4971636

Pseudomonas_phage(93.1%)

lysis,protease,portal,terminase,integrase,holin

attL 4926411:4926429|attR 4977553:4977571

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4926411:4926429	attL	NA	NA	NA	NA
WP_023109421.1\|4929027_4930131_-\|integrase	tyrosine-type recombinase/integrase	A0A0U4JIT5	Pseudomonas_phage	6.0e-206	100.0
WP_071535693.1\|4930111_4930354_-	excisionase	NA	NA	NA	NA
WP_031635738.1\|4930573_4930891_-	hypothetical protein	A0A0U4JVQ0	Pseudomonas_phage	8.3e-52	95.2
WP_071540777.1\|4930935_4931256_-	hypothetical protein	A0A0A1IUI9	Pseudomonas_phage	7.4e-16	93.5
WP_003159448.1\|4931248_4931449_-	hypothetical protein	A0A0S2SY76	Pseudomonas_phage	2.9e-34	100.0
WP_016852531.1\|4931438_4932101_-	hypothetical protein	Q9MC60	Pseudomonas_phage	4.9e-46	51.8
WP_016852532.1\|4932093_4932375_-	DUF4031 domain-containing protein	A0A125RNQ7	Pseudomonas_phage	3.6e-46	100.0
WP_003159450.1\|4932374_4933091_-	hypothetical protein	Q9MC58	Pseudomonas_phage	4.2e-35	69.2
WP_003159451.1\|4933083_4933467_-	hypothetical protein	NA	NA	NA	NA
WP_016852533.1\|4933478_4934726_-	hypothetical protein	A0A2H5BQE8	Pseudomonas_phage	5.4e-46	35.0
WP_016852534.1\|4934893_4935103_-	hypothetical protein	H2BDF2	Pseudomonas_virus	3.6e-27	84.1
WP_071537943.1\|4935066_4935315_-	hypothetical protein	A0A0U4J8Y4	Pseudomonas_phage	3.2e-35	91.5
WP_016852536.1\|4935327_4936089_-	methyltransferase	W0LM09	Edwardsiella_phage	1.3e-63	63.6
WP_016852537.1\|4936171_4936789_-	hypothetical protein	H2BDG4	Pseudomonas_virus	5.6e-36	42.7
WP_003159456.1\|4936818_4937355_-	DUF4406 domain-containing protein	A0A1B0YZW9	Pseudomonas_phage	1.1e-96	97.2
WP_016852538.1\|4937351_4937729_-	hypothetical protein	NA	NA	NA	NA
WP_003159458.1\|4937793_4938096_-	hypothetical protein	A0A0U4ISH7	Pseudomonas_phage	4.1e-40	97.0
WP_016852539.1\|4938095_4938458_-	hypothetical protein	A0A0U4KL54	Pseudomonas_phage	9.9e-49	85.8
WP_016852540.1\|4938844_4939093_-	hypothetical protein	A0A1B0YZY1	Pseudomonas_phage	2.7e-34	90.2
WP_016852541.1\|4939103_4939487_-	LuxR family transcriptional regulator	A0A0U4IIG4	Pseudomonas_phage	2.0e-60	93.7
WP_016852542.1\|4939797_4940664_-	ParB N-terminal domain-containing protein	A0A0U4JP11	Pseudomonas_phage	2.4e-157	99.0
WP_016852942.1\|4940929_4941151_-	hypothetical protein	NA	NA	NA	NA
WP_016852941.1\|4941355_4941634_-	hypothetical protein	NA	NA	NA	NA
WP_015649351.1\|4942375_4942582_-	hypothetical protein	A0A0U4IJ22	Pseudomonas_phage	3.9e-34	97.1
WP_016852544.1\|4943154_4943916_-	LexA family transcriptional regulator	A0A2H4J6J6	uncultured_Caudovirales_phage	3.6e-40	59.0
WP_003159463.1\|4944393_4945107_+	DNA-binding protein	A0A1B0YZY9	Pseudomonas_phage	1.5e-77	67.2
WP_063174122.1\|4945171_4945867_+	helix-turn-helix domain-containing protein	A0A0U4IBP5	Pseudomonas_phage	1.7e-65	75.4
WP_016852547.1\|4945863_4946547_+	hypothetical protein	A0A1B0YZY6	Pseudomonas_phage	2.3e-123	98.2
WP_003159465.1\|4946543_4946750_+	hypothetical protein	A0A1B0YZY8	Pseudomonas_phage	3.1e-31	94.1
WP_016852548.1\|4946746_4947328_+	recombination protein NinG	A0A0U4KL68	Pseudomonas_phage	1.5e-102	94.8
WP_016852549.1\|4947324_4947621_+	hypothetical protein	A0A1B0YZZ2	Pseudomonas_phage	8.1e-41	83.7
WP_016852550.1\|4947622_4947997_+	hypothetical protein	NA	NA	NA	NA
WP_003159469.1\|4948266_4948599_+\|holin	phage holin, lambda family	A0A1B0YZZ1	Pseudomonas_phage	1.1e-43	95.5
WP_003159470.1\|4948595_4949213_+	glycoside hydrolase family 19 protein	A0A0U4JP23	Pseudomonas_phage	8.0e-107	92.6
WP_016852551.1\|4949209_4949452_+	hypothetical protein	A0A0H5AWC3	Pseudomonas_phage	8.4e-20	51.9
WP_016852552.1\|4949448_4949919_+\|lysis	lysis protein Rz	A0A1B0Z001	Pseudomonas_phage	9.1e-71	91.7
WP_016852553.1\|4949915_4950659_+	hypothetical protein	A0A1B0Z000	Pseudomonas_phage	1.4e-134	99.2
WP_015980902.1\|4950778_4951324_+	hypothetical protein	A0A0A0YWC3	Pseudomonas_phage	3.1e-94	100.0
WP_016852554.1\|4951295_4953275_+\|terminase	phage terminase large subunit family protein	A0A1W6JT68	Pseudomonas_phage	0.0e+00	99.2
WP_003159476.1\|4953265_4953481_+	hypothetical protein	A0A1B0YZU1	Pseudomonas_phage	8.5e-32	100.0
WP_003159477.1\|4953480_4955127_+\|portal	phage portal protein	A0A0A0YUB7	Pseudomonas_phage	0.0e+00	99.6
WP_016852555.1\|4955086_4957180_+\|protease	Clp protease ClpP	A0A1W6JT88	Pseudomonas_phage	0.0e+00	99.1
WP_003129701.1\|4957246_4957564_+	DUF2190 family protein	A0A1W6JT93	Pseudomonas_phage	4.6e-50	100.0
WP_003159073.1\|4957560_4957890_+	hypothetical protein	A0A1B0YZU3	Pseudomonas_phage	6.8e-57	99.1
WP_016852556.1\|4957886_4958357_+	hypothetical protein	A0A1W6JT75	Pseudomonas_phage	5.9e-86	98.7
WP_003159478.1\|4958360_4958555_+	hypothetical protein	A0A1W6JT79	Pseudomonas_phage	2.2e-26	95.3
WP_003129705.1\|4958556_4959309_+	hypothetical protein	A0A1B0YZT8	Pseudomonas_phage	9.9e-136	98.4
WP_050397059.1\|4959390_4959912_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	A0A1B0YZT9	Pseudomonas_phage	1.8e-91	99.4
WP_071535696.1\|4959983_4960511_+	DUF4124 domain-containing protein	A0A1B0Z2K9	Pseudomonas_phage	4.3e-93	98.9
WP_010791966.1\|4960575_4960878_+	hypothetical protein	A0A1B0YZV7	Pseudomonas_phage	7.0e-48	99.0
WP_003159479.1\|4960980_4963464_+	tape measure protein	A0A1B0YZV6	Pseudomonas_phage	0.0e+00	98.8
WP_016852557.1\|4963504_4964026_+	hypothetical protein	A0A1W6JT98	Pseudomonas_phage	3.7e-97	98.3
WP_003159480.1\|4964025_4965723_+	hypothetical protein	A0A1W6JTA3	Pseudomonas_phage	3.1e-310	95.4
WP_016852558.1\|4965725_4966136_+	hypothetical protein	A0A1B0YZV0	Pseudomonas_phage	5.4e-59	88.9
WP_003159482.1\|4966692_4967115_+	hypothetical protein	A0A1W6JT91	Pseudomonas_phage	7.7e-69	96.4
WP_003159483.1\|4967101_4968601_+	hypothetical protein	A0A1W6JT90	Pseudomonas_phage	1.1e-223	82.1
WP_003159484.1\|4968623_4969211_+	hypothetical protein	A0A0U4B0K9	Pseudomonas_phage	1.3e-103	96.4
WP_003159486.1\|4969203_4969395_+	hypothetical protein	A0A1B0Z2L3	Pseudomonas_phage	7.0e-30	100.0
WP_003159487.1\|4969399_4969960_+	hypothetical protein	A0A0U4JIY3	Pseudomonas_phage	2.7e-98	98.4
WP_003159488.1\|4969959_4970241_+	hypothetical protein	A0A1W6JTD4	Pseudomonas_phage	7.9e-46	98.9
WP_071538201.1\|4970233_4970797_+	hypothetical protein	A0A0A0YRS1	Pseudomonas_phage	5.4e-62	69.5
WP_016852560.1\|4970796_4971099_+	hypothetical protein	A0A0S2SY61	Pseudomonas_phage	1.1e-42	87.0
WP_016852561.1\|4971095_4971335_+	hypothetical protein	A0A1B0YZV9	Pseudomonas_phage	3.5e-34	92.4
WP_016852562.1\|4971357_4971636_+	hypothetical protein	A0A0U4JEI3	Pseudomonas_phage	7.1e-47	97.8
4977553:4977571	attR	NA	NA	NA	NA

DBSCAN-SWA_6

5014944 : 5023973

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003098558.1\|5014944_5015580_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.0e-40	52.3
WP_016852568.1\|5015625_5016519_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	3.0e-06	34.3
WP_003113871.1\|5016623_5017628_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	7.0e-36	37.3
WP_003119354.1\|5018054_5018378_-	ferredoxin family protein	NA	NA	NA	NA
WP_003113873.1\|5018444_5021012_-	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	3.2e-24	22.1
WP_003098486.1\|5021137_5022145_-	TolB family protein	NA	NA	NA	NA
WP_003129950.1\|5022292_5022799_+	CinA family protein	B5TK85	Pseudomonas_phage	1.8e-56	76.0
WP_003092260.1\|5022932_5023973_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.5e-113	59.5

DBSCAN-SWA_7

6082082 : 6151095

Pseudomonas_phage(65.67%)

protease,head,tRNA,terminase,integrase,holin

attL 6072129:6072148|attR 6113691:6113710

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
6072129:6072148	attL	NA	NA	NA	NA
WP_003097649.1\|6082082_6082451_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.9e-11	41.6
WP_003090432.1\|6082478_6084755_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	3.4e-163	42.8
WP_002553999.1\|6084836_6085055_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_003097644.1\|6085159_6085867_-	arginyltransferase	NA	NA	NA	NA
WP_003108768.1\|6085921_6086602_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_016852738.1\|6086639_6087590_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	5.4e-62	43.0
WP_003131123.1\|6087817_6090253_+	DNA translocase FtsK	G1D482	Mycobacterium_virus	1.9e-87	52.8
WP_003090414.1\|6090278_6090905_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_003097632.1\|6090914_6092240_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.2e-80	39.2
WP_003119978.1\|6092361_6093642_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.8e-97	45.2
WP_003113366.1\|6093643_6095041_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_016852739.1\|6095045_6096020_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003108776.1\|6096107_6097091_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	9.3e-142	74.3
WP_003119979.1\|6097087_6097423_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.5e-38	69.4
WP_003090391.1\|6097419_6097725_-	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_016562012.1\|6097724_6098084_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.1e-34	61.7
WP_016562011.1\|6098080_6098476_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	3.5e-47	71.3
WP_003090386.1\|6098586_6099255_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.5e-90	82.1
WP_016852955.1\|6099590_6100658_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	8.3e-136	68.7
WP_003116724.1\|6100659_6100896_-	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	3.8e-17	53.2
WP_016852956.1\|6100974_6103338_-	hypothetical protein	A0A0U1UNM2	Pseudomonas_phage	2.1e-147	45.1
WP_016852957.1\|6103435_6103942_-	hypothetical protein	L7TI83	Pseudomonas_virus	1.3e-86	95.8
WP_016852958.1\|6103938_6104340_-	hypothetical protein	NA	NA	NA	NA
WP_016852959.1\|6104347_6105109_-	hypothetical protein	Q5QF32	Pseudomonas_virus	7.4e-147	98.0
WP_016852960.1\|6105105_6105594_-	DUF1643 domain-containing protein	A0A0U1W068	Pseudomonas_phage	1.7e-91	95.1
WP_016852961.1\|6105590_6106268_-	hypothetical protein	A0A0U1SZL2	Pseudomonas_phage	1.8e-64	59.0
WP_016852962.1\|6106264_6106708_-	hypothetical protein	A0A2K8HVL6	Pseudomonas_phage	4.0e-60	81.0
WP_019485767.1\|6106704_6108483_-	DNA methyltransferase	Q9ZXI4	Pseudomonas_virus	1.8e-300	97.8
WP_016852741.1\|6108479_6111110_-	DNA methylase N-4	J7I4L6	Pseudomonas_phage	0.0e+00	98.1
WP_016852742.1\|6111256_6112999_-	AAA family ATPase	J7HXJ7	Pseudomonas_phage	2.0e-251	82.0
WP_016852743.1\|6113002_6113770_-	hypothetical protein	J7I0T4	Pseudomonas_phage	6.0e-120	77.1
6113691:6113710	attR	NA	NA	NA	NA
WP_009314053.1\|6113780_6113981_-	hypothetical protein	J7I437	Pseudomonas_phage	1.9e-30	100.0
WP_014602814.1\|6113987_6114887_-	recombination protein RecT	Q858E1	Salmonella_phage	3.2e-104	73.6
WP_016852744.1\|6114899_6115808_-	endonuclease	Q858E0	Salmonella_phage	2.9e-121	71.5
WP_016852745.1\|6115782_6116280_-	hypothetical protein	NA	NA	NA	NA
WP_009314056.1\|6116290_6116500_-	hypothetical protein	NA	NA	NA	NA
WP_003099037.1\|6116496_6116718_-	hypothetical protein	H2BD53	Pseudomonas_phage	1.2e-33	100.0
WP_016852747.1\|6117262_6117511_-	hypothetical protein	NA	NA	NA	NA
WP_016852748.1\|6117524_6117893_-	carbon storage regulator CsrA	J7I430	Pseudomonas_phage	4.6e-62	99.2
WP_020750452.1\|6117927_6118140_-	hypothetical protein	L7TKR9	Pseudomonas_virus	5.8e-33	97.1
WP_016852942.1\|6118202_6118424_-	hypothetical protein	NA	NA	NA	NA
WP_016852941.1\|6118628_6118907_-	hypothetical protein	NA	NA	NA	NA
WP_015649351.1\|6119648_6119855_-	hypothetical protein	A0A0U4IJ22	Pseudomonas_phage	3.9e-34	97.1
WP_023082999.1\|6119865_6120072_-	hypothetical protein	A0A0U4B0I0	Pseudomonas_phage	2.2e-29	94.1
WP_058148849.1\|6120532_6121021_-	hypothetical protein	NA	NA	NA	NA
WP_016852749.1\|6121068_6121734_-	helix-turn-helix transcriptional regulator	H2BDH4	Pseudomonas_virus	1.1e-45	42.4
WP_016852750.1\|6122023_6122335_+	transcriptional regulator	Q37905	Pseudomonas_phage	1.5e-13	44.7
WP_016263332.1\|6122603_6122786_+	hypothetical protein	A0A127KNC5	Pseudomonas_phage	4.5e-26	100.0
WP_016852752.1\|6122778_6123579_+	hypothetical protein	J7I419	Pseudomonas_phage	7.8e-147	98.5
WP_016852753.1\|6123571_6124987_+	replicative DNA helicase	H2BD70	Pseudomonas_phage	4.4e-262	99.2
WP_016852754.1\|6124979_6125423_+	RusA family crossover junction endodeoxyribonuclease	H2BD71	Pseudomonas_phage	2.8e-53	69.9
WP_016852755.1\|6125451_6126321_+	hypothetical protein	J7HXH6	Pseudomonas_phage	4.2e-162	96.5
WP_016852756.1\|6126435_6126825_+	hypothetical protein	J7I0R6	Pseudomonas_phage	1.3e-62	100.0
WP_016852757.1\|6126817_6127102_+\|holin	phage holin family protein	H2BD74	Pseudomonas_phage	5.9e-41	97.9
WP_003131202.1\|6127110_6127653_+\|terminase	terminase small subunit	H2BD75	Pseudomonas_phage	5.0e-97	98.3
WP_016852758.1\|6127636_6128890_+\|terminase	terminase	J7I4J3	Pseudomonas_phage	4.5e-250	100.0
WP_016852759.1\|6128889_6129087_+	hypothetical protein	H2BD77	Pseudomonas_phage	5.2e-28	98.5
WP_016852760.1\|6129089_6130409_+	DUF1073 domain-containing protein	J7I414	Pseudomonas_phage	2.5e-259	99.5
WP_031640471.1\|6130416_6131346_+\|head	SPP1 gp7 family phage head morphogenesis protein	H2BD79	Pseudomonas_phage	1.5e-170	99.0
WP_016852762.1\|6131349_6132627_+	hypothetical protein	A0A125RNM1	Pseudomonas_phage	8.2e-215	99.3
WP_016852763.1\|6132630_6133080_+	hypothetical protein	H2BD81	Pseudomonas_phage	4.8e-77	98.0
WP_016852764.1\|6133095_6134190_+	hypothetical protein	J7I0Q9	Pseudomonas_phage	4.6e-206	97.8
WP_016852765.1\|6134200_6134659_+	hypothetical protein	A0A125RNM4	Pseudomonas_phage	5.1e-50	75.0
WP_016852767.1\|6134970_6135372_+	hypothetical protein	J7HX89	Pseudomonas_phage	5.0e-70	97.0
WP_016852768.1\|6135368_6135689_+	hypothetical protein	J7I4I8	Pseudomonas_phage	1.6e-55	95.3
WP_016852769.1\|6135690_6136095_+	hypothetical protein	H2BD87	Pseudomonas_phage	8.1e-68	99.3
WP_016852770.1\|6136091_6136466_+	hypothetical protein	J7I407	Pseudomonas_phage	2.9e-67	98.4
WP_016852771.1\|6136480_6137476_+	hypothetical protein	H2BD89	Pseudomonas_phage	3.6e-165	94.3
WP_016852772.1\|6137472_6138090_+	hypothetical protein	A0A125RNN1	Pseudomonas_phage	2.6e-113	99.5
WP_016852773.1\|6138089_6141101_+	tape measure protein	A0A125RNN2	Pseudomonas_phage	0.0e+00	98.8
WP_016852774.1\|6141097_6141565_+	hypothetical protein	H2BD92	Pseudomonas_phage	1.4e-92	99.4
WP_016852775.1\|6141548_6142040_+	DUF1833 family protein	H2BDC5	Pseudomonas_virus	1.0e-88	98.2
WP_015648624.1\|6142044_6142452_+	hypothetical protein	J7HX80	Pseudomonas_phage	1.4e-72	97.0
WP_025986345.1\|6142423_6145153_+	hypothetical protein	A0A127KNI3	Pseudomonas_phage	0.0e+00	98.0
WP_071540781.1\|6145213_6146893_+	hypothetical protein	A0A2H5BQA0	Pseudomonas_phage	1.9e-211	84.8
WP_071540780.1\|6146905_6148981_+	acyltransferase	B5WZU0	Pseudomonas_phage	2.9e-60	35.2
WP_016852779.1\|6149025_6149655_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	1.9e-111	96.2
WP_016852780.1\|6149651_6150020_+	hypothetical protein	H2BDD6	Pseudomonas_virus	6.5e-48	87.7
WP_016852781.1\|6150016_6150280_+	hypothetical protein	A0A0U4B0B7	Pseudomonas_phage	1.5e-35	93.0
WP_012614041.1\|6150315_6150579_+	hypothetical protein	A0A0U4JX18	Pseudomonas_phage	2.4e-44	96.6
WP_016852782.1\|6150582_6151095_-	hypothetical protein	L7TIE6	Pseudomonas_virus	1.2e-92	92.9

Anti-CRISPR protein detection

Acr_ID: NZ_CP015117.1|WP_003158163.1|2315064_2315439_+|hypothetical-protein

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Acr_ID: NZ_CP015117.1|WP_003158160.1|2317180_2317573_+|hypothetical-protein

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Acr_ID: NZ_CP015117.1|WP_003158159.1|2317591_2317915_+|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP015117.1|WP_003158163.1|2315064_2315439_+|hypothetical-protein

2315064_2315439_+

124 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|27	1.0	1	1.0

NZ_CP015117.1|WP_003158160.1|2317180_2317573_+|hypothetical-protein

2317180_2317573_+

130 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|3	0.4251968503937008	0.9307692307692308	0.8785714285714286

NZ_CP015117.1|WP_003158159.1|2317591_2317915_+|hypothetical-protein

2317591_2317915_+

107 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|15	0.6213592233009708	0.9719626168224299	0.99

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP015117

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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