CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP014622	Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1727 isolate SAN1261-1 plasmid pSAN1-1727, complete sequence	0 crisprs	c2c9_V-U4	0	0	0	0
NZ_CP014621	Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1727 isolate SAN1261-1 chromosome, complete genome	2 crisprs	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	0	5	13	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014621_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014621_1

971538-972298

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

12 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NZ_CP014621_1

>merge|NZ_CP014621|1|971538-972298|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGAACTGAAACCAGGCCAGGTGATATTTATCAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGAGTGTGAGCAGGCTATTTATGATGAGCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCTCCGAATGTGAAGAATCCGACGCTATTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGTACCGCGACACCGTCAACGACAGCAACCACTTGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGTCACTAAAATTTGTAGGGTTATCCACAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGCAATTGCAGTTTGACGCGGTGCTGTCATTGTGTTCCCCGCGCCAGCGGGGATAAACCGTGTCTTAACTCCATTGCTGAGTCGATTGTGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCACACAGAACGCCAGTTATAATCATCGGTGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGTTTGTGGCGTCAGTAATACTATTATCGGTGTGTTCCCCGCGCTAGCGGGGATAAACCGTTTTTAAATCCGGACAGACCCTGTAACGGATCGTGTTCCCCGCGCCAGCGGGGATAAACCGATCCGACTGTATGCCCAGCAGAACGAGGGCGCGTGTTCCCCGCGCTAGCGGGGATAAACCGCACGAGTGGCAAATTGATTTCGACGAAAAACCGTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP014621|1|1|971538-972237|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTGAAACCAGGCCAGGTGATATTTATCAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAGTGTGAGCAGGCTATTTATGATGAGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTCCGAATGTGAAGAATCCGACGCTATTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACCGCGACACCGTCAACGACAGCAACCACTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTCACTAAAATTTGTAGGGTTATCCACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCAATTGCAGTTTGACGCGGTGCTGTCATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCTTAACTCCATTGCTGAGTCGATTGTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACACAGAACGCCAGTTATAATCATCGGTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGTTTGTGGCGTCAGTAATACTATTATCGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TTTTTAAATCCGGACAGACCCTGTAACGGATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCGACTGTATGCCCAGCAGAACGAGGGCGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG

>NZ_CP014621|1|1|971538-972298|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTGAAACCAGGCCAGGTGATATTTATCAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAGTGTGAGCAGGCTATTTATGATGAGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTCCGAATGTGAAGAATCCGACGCTATTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACCGCGACACCGTCAACGACAGCAACCACTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTCACTAAAATTTGTAGGGTTATCCACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCAATTGCAGTTTGACGCGGTGCTGTCATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCTTAACTCCATTGCTGAGTCGATTGTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACACAGAACGCCAGTTATAATCATCGGTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGTTTGTGGCGTCAGTAATACTATTATCGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TTTTTAAATCCGGACAGACCCTGTAACGGATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCGACTGTATGCCCAGCAGAACGAGGGCGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CACGAGTGGCAAATTGATTTCGACGAAAAACC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP014621|1|1|971538-972298|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTGAAACCAGGCCAGGTGATATTTATCAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAGTGTGAGCAGGCTATTTATGATGAGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTCCGAATGTGAAGAATCCGACGCTATTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACCGCGACACCGTCAACGACAGCAACCACTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTCACTAAAATTTGTAGGGTTATCCACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCAATTGCAGTTTGACGCGGTGCTGTCATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCTTAACTCCATTGCTGAGTCGATTGTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACACAGAACGCCAGTTATAATCATCGGTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGTTTGTGGCGTCAGTAATACTATTATCGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TTTTTAAATCCGGACAGACCCTGTAACGGATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCGACTGTATGCCCAGCAGAACGAGGGCGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CACGAGTGGCAAATTGATTTCGACGAAAAACC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014621.2\|WP_023243194.1\|980010_982674_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP014621.2\|WP_023243193.1\|982685_984242_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP014621.2\|WP_023243192.1\|984812_985871_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP014621.2\|WP_000480218.1\|965004_965361_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
NZ_CP014621.2\|WP_023243195.1\|977666_978401_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP014621.2\|WP_001208002.1\|972395_973193_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP014621.2\|WP_000210454.1\|966387_967188_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP014621.2\|WP_000117946.1\|984238_984799_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP014621.2\|WP_000108313.1\|973282_973645_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP014621.2\|WP_063267763.1\|975878_977591_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP014621.2\|WP_000226842.1\|962686_964921_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP014621.2\|WP_001199961.1\|970569_971241_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP014621.2\|WP_000036734.1\|969135_970434_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP014621.2\|WP_023244652.1\|974079_975879_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP014621.2\|WP_000706479.1\|957339_958482_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
NZ_CP014621.2\|WP_000859612.1\|965326_965623_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP014621.2\|WP_023243200.1\|961339_962635_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP014621.2\|WP_023244651.1\|978613_979567_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP014621.2\|WP_000186400.1\|958525_961282_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP014621.2\|WP_000210863.1\|967415_969053_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437

Protein	Function_ID	Function_description	E-value
NZ_CP014621.2\|WP_023243194.1\|980010_982674_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP014621.2\|WP_023243193.1\|982685_984242_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP014621.2\|WP_023243192.1\|984812_985871_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.6231e-131
NZ_CP014621.2\|WP_000480218.1\|965004_965361_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	6.12601e-20
NZ_CP014621.2\|WP_023243195.1\|977666_978401_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.18614e-138
NZ_CP014621.2\|WP_001208002.1\|972395_973193_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	5.39566e-102
NZ_CP014621.2\|WP_000210454.1\|966387_967188_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.36327e-159
NZ_CP014621.2\|WP_000117946.1\|984238_984799_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
NZ_CP014621.2\|WP_000108313.1\|973282_973645_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP014621.2\|WP_063267763.1\|975878_977591_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP014621.2\|WP_000226842.1\|962686_964921_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP014621.2\|WP_001199961.1\|970569_971241_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP014621.2\|WP_000036734.1\|969135_970434_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP014621.2\|WP_023244652.1\|974079_975879_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP014621.2\|WP_000706479.1\|957339_958482_+\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
NZ_CP014621.2\|WP_000859612.1\|965326_965623_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	1.09008e-13
NZ_CP014621.2\|WP_023243200.1\|961339_962635_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP014621.2\|WP_023244651.1\|978613_979567_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP014621.2\|WP_000186400.1\|958525_961282_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP014621.2\|WP_000210863.1\|967415_969053_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0

>NZ_CP014621.2|WP_001199961.1|970569_971241_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP014621.2|WP_000036734.1|969135_970434_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP014621.2|WP_000210863.1|967415_969053_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP014621.2|WP_000210454.1|966387_967188_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP014621.2|WP_000859612.1|965326_965623_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MKTVKLTPKASEDLENIWHYGWQHFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFERHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>NZ_CP014621.2|WP_000480218.1|965004_965361_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>NZ_CP014621.2|WP_000226842.1|962686_964921_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNIQAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>NZ_CP014621.2|WP_023243200.1|961339_962635_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLECFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NZ_CP014621.2|WP_000186400.1|958525_961282_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>NZ_CP014621.2|WP_000706479.1|957339_958482_+|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>NZ_CP014621.2|WP_001208002.1|972395_973193_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP014621.2|WP_000108313.1|973282_973645_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP014621.2|WP_023244652.1|974079_975879_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMSGITLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVMVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP014621.2|WP_063267763.1|975878_977591_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGELRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENIAEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP014621.2|WP_023243195.1|977666_978401_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDEITDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP014621.2|WP_023244651.1|978613_979567_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDLLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP014621.2|WP_023243194.1|980010_982674_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMCNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYTSGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP014621.2|WP_023243193.1|982685_984242_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVNLADENVMDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGGCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRGALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIQDLENGHKPDERLNKWQRELWLFTRRYFDDRVFTNPYESSDLKRIMTARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP014621.2|WP_000117946.1|984238_984799_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NZ_CP014621.2|WP_023243192.1|984812_985871_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICINKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNAAVKRITALHENMNEVYAQETAFKNFNVMNQQGSMKDVLDFICA

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Crispr_ID: NZ_CP014621_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014621_2

988612-988762

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CRISPRCasFinder

2 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP014621_2

>merge|NZ_CP014621|2|988612-988762|CRISPRCasFinder
GTGTTCCCCGCGCTAGCGGGGATAAACCGGAGCGGCTAAACGATGAATTAACCAGGGAGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGCACAACGCCTGGATATCCGCCCATCGGCCGTGTTCCCCGCGTCAGCGGGGATAAACAC

>NZ_CP014621|2|2|988612-988762|CRISPRCasFinder
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GAGCGGCTAAACGATGAATTAACCAGGGAGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCACAACGCCTGGATATCCGCCCATCGGCC
GTGTTCCCCGCGTCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014621.2\|WP_001221538.1\|996133_996895_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP014621.2\|WP_000281483.1\|986609_987260_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP014621.2\|WP_000085115.1\|985881_986628_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP014621.2\|WP_001118109.1\|993040_993397_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP014621.2\|WP_023243192.1\|984812_985871_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP014621.2\|WP_000134246.1\|995103_996153_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP014621.2\|WP_000517480.1\|993587_993899_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP014621.2\|WP_023244650.1\|987256_988222_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP014621.2\|WP_063267764.1\|990991_992431_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP014621.2\|WP_023243193.1\|982685_984242_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP014621.2\|WP_023244651.1\|978613_979567_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP014621.2\|WP_001173664.1\|992417_993023_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP014621.2\|WP_001518648.1\|988221_988515_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP014621.2\|WP_001219245.1\|994627_995107_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP014621.2\|WP_023243195.1\|977666_978401_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP014621.2\|WP_000741650.1\|993917_994628_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP014621.2\|WP_000372384.1\|990073_990982_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP014621.2\|WP_023243194.1\|980010_982674_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP014621.2\|WP_000117946.1\|984238_984799_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP014621.2\|WP_000490481.1\|988776_989823_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299

Protein	Function_ID	Function_description	E-value
NZ_CP014621.2\|WP_001221538.1\|996133_996895_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_CP014621.2\|WP_000281483.1\|986609_987260_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	7.7595e-75
NZ_CP014621.2\|WP_000085115.1\|985881_986628_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.23137e-48
NZ_CP014621.2\|WP_001118109.1\|993040_993397_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
NZ_CP014621.2\|WP_023243192.1\|984812_985871_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.6231e-131
NZ_CP014621.2\|WP_000134246.1\|995103_996153_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP014621.2\|WP_000517480.1\|993587_993899_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP014621.2\|WP_023244650.1\|987256_988222_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.61403e-153
NZ_CP014621.2\|WP_063267764.1\|990991_992431_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP014621.2\|WP_023243193.1\|982685_984242_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP014621.2\|WP_023244651.1\|978613_979567_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP014621.2\|WP_001173664.1\|992417_993023_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.11365e-145
NZ_CP014621.2\|WP_001518648.1\|988221_988515_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
NZ_CP014621.2\|WP_001219245.1\|994627_995107_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
NZ_CP014621.2\|WP_023243195.1\|977666_978401_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.18614e-138
NZ_CP014621.2\|WP_000741650.1\|993917_994628_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.67998e-119
NZ_CP014621.2\|WP_000372384.1\|990073_990982_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP014621.2\|WP_023243194.1\|980010_982674_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP014621.2\|WP_000117946.1\|984238_984799_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
NZ_CP014621.2\|WP_000490481.1\|988776_989823_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0

>NZ_CP014621.2|WP_001518648.1|988221_988515_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NZ_CP014621.2|WP_023244650.1|987256_988222_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NZ_CP014621.2|WP_000281483.1|986609_987260_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASTIFDVQTRPFAPMLSAGQTLRFNLRANPTICKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALEWLARQGEQNGFTLREASVDAYRQQQIRREKSRQMIQFSSVDYTGVLVINEPALFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>NZ_CP014621.2|WP_000085115.1|985881_986628_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNTFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQAALQHPVFPLYLGRKSHPLALPLAPQLLEGNAADVLREAYRWYQDQFNALKLTLPGLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NZ_CP014621.2|WP_023243192.1|984812_985871_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICINKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNAAVKRITALHENMNEVYAQETAFKNFNVMNQQGSMKDVLDFICA
>NZ_CP014621.2|WP_000117946.1|984238_984799_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NZ_CP014621.2|WP_023243193.1|982685_984242_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVNLADENVMDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGGCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRGALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIQDLENGHKPDERLNKWQRELWLFTRRYFDDRVFTNPYESSDLKRIMTARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP014621.2|WP_023243194.1|980010_982674_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMCNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYTSGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP014621.2|WP_023244651.1|978613_979567_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDLLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP014621.2|WP_023243195.1|977666_978401_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDEITDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP014621.2|WP_000490481.1|988776_989823_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP014621.2|WP_000372384.1|990073_990982_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP014621.2|WP_063267764.1|990991_992431_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDNLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPMEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP014621.2|WP_001173664.1|992417_993023_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARSGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP014621.2|WP_001118109.1|993040_993397_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP014621.2|WP_000517480.1|993587_993899_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP014621.2|WP_000741650.1|993917_994628_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLYDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP014621.2|WP_001219245.1|994627_995107_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP014621.2|WP_000134246.1|995103_996153_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP014621.2|WP_001221538.1|996133_996895_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014621_2	2.2\|988702\|32\|NZ_CP014621\|CRISPRCasFinder	988702-988733	32	NZ_CP044185	Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403	35345-35376	0	1.0
NZ_CP014621_2	2.2\|988702\|32\|NZ_CP014621\|CRISPRCasFinder	988702-988733	32	NZ_CP029990	Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591 plasmid pSA20121591.1, complete sequence	95164-95195	1	0.969
NZ_CP014621_2	2.2\|988702\|32\|NZ_CP014621\|CRISPRCasFinder	988702-988733	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	9403-9434	1	0.969
NZ_CP014621_2	2.2\|988702\|32\|NZ_CP014621\|CRISPRCasFinder	988702-988733	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	39737-39768	1	0.969
NZ_CP014621_2	2.2\|988702\|32\|NZ_CP014621\|CRISPRCasFinder	988702-988733	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	113376-113407	1	0.969
NZ_CP014621_1	1.4\|971750\|32\|NZ_CP014621\|PILER-CR,CRISPRCasFinder,CRT	971750-971781	32	NZ_CP018865	Arthrobacter crystallopoietes strain DSM 20117 plasmid pLDW-10, complete sequence	205587-205618	6	0.812
NZ_CP014621_1	1.7\|971933\|32\|NZ_CP014621\|PILER-CR,CRISPRCasFinder,CRT	971933-971964	32	NC_015727	Cupriavidus necator N-1 plasmid pBB1, complete sequence	1236642-1236673	6	0.812
NZ_CP014621_1	1.7\|971933\|32\|NZ_CP014621\|PILER-CR,CRISPRCasFinder,CRT	971933-971964	32	NC_015727	Cupriavidus necator N-1 plasmid pBB1, complete sequence	1370300-1370331	6	0.812
NZ_CP014621_2	2.2\|988702\|32\|NZ_CP014621\|CRISPRCasFinder	988702-988733	32	NZ_CP040720	Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence	270963-270994	7	0.781
NZ_CP014621_1	1.4\|971750\|32\|NZ_CP014621\|PILER-CR,CRISPRCasFinder,CRT	971750-971781	32	NZ_CP015738	Shinella sp. HZN7 plasmid pShin-02, complete sequence	176307-176338	8	0.75
NZ_CP014621_1	1.4\|971750\|32\|NZ_CP014621\|PILER-CR,CRISPRCasFinder,CRT	971750-971781	32	NZ_CP010410	Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence	332281-332312	8	0.75
NZ_CP014621_1	1.10\|972116\|32\|NZ_CP014621\|PILER-CR,CRISPRCasFinder,CRT	972116-972147	32	NZ_CP025224	Enterococcus sp. CR-Ec1 plasmid pCREc1, complete sequence	62016-62047	8	0.75
NZ_CP014621_1	1.12\|972238\|32\|NZ_CP014621\|CRISPRCasFinder,CRT	972238-972269	32	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1655546-1655577	8	0.75
NZ_CP014621_1	1.12\|972238\|32\|NZ_CP014621\|CRISPRCasFinder,CRT	972238-972269	32	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	1565948-1565979	8	0.75
NZ_CP014621_1	1.12\|972238\|32\|NZ_CP014621\|CRISPRCasFinder,CRT	972238-972269	32	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	1565949-1565980	8	0.75
NZ_CP014621_1	1.4\|971750\|32\|NZ_CP014621\|PILER-CR,CRISPRCasFinder,CRT	971750-971781	32	AP018399	Xanthomonas phage XacN1 DNA, complete genome	89668-89699	9	0.719
NZ_CP014621_1	1.4\|971750\|32\|NZ_CP014621\|PILER-CR,CRISPRCasFinder,CRT	971750-971781	32	NC_030917	Gordonia phage OneUp, complete genome	3597-3628	9	0.719
NZ_CP014621_1	1.12\|972238\|32\|NZ_CP014621\|CRISPRCasFinder,CRT	972238-972269	32	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	1578348-1578379	9	0.719
NZ_CP014621_1	1.12\|972238\|32\|NZ_CP014621\|CRISPRCasFinder,CRT	972238-972269	32	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	1496565-1496596	9	0.719
NZ_CP014621_1	1.12\|972238\|32\|NZ_CP014621\|CRISPRCasFinder,CRT	972238-972269	32	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1568471-1568502	9	0.719
NZ_CP014621_1	1.12\|972238\|32\|NZ_CP014621\|CRISPRCasFinder,CRT	972238-972269	32	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	1495587-1495618	9	0.719
NZ_CP014621_1	1.12\|972238\|32\|NZ_CP014621\|CRISPRCasFinder,CRT	972238-972269	32	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	1496557-1496588	9	0.719
NZ_CP014621_1	1.12\|972238\|32\|NZ_CP014621\|CRISPRCasFinder,CRT	972238-972269	32	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	1495910-1495941	9	0.719
NZ_CP014621_1	1.12\|972238\|32\|NZ_CP014621\|CRISPRCasFinder,CRT	972238-972269	32	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	1496547-1496578	9	0.719
NZ_CP014621_1	1.12\|972238\|32\|NZ_CP014621\|CRISPRCasFinder,CRT	972238-972269	32	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	1578515-1578546	9	0.719
NZ_CP014621_1	1.12\|972238\|32\|NZ_CP014621\|CRISPRCasFinder,CRT	972238-972269	32	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	1578498-1578529	9	0.719
NZ_CP014621_1	1.12\|972238\|32\|NZ_CP014621\|CRISPRCasFinder,CRT	972238-972269	32	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	1578478-1578509	9	0.719
NZ_CP014621_1	1.4\|971750\|32\|NZ_CP014621\|PILER-CR,CRISPRCasFinder,CRT	971750-971781	32	NZ_CP018784	Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence	161882-161913	10	0.688

1. spacer 2.2|988702|32|NZ_CP014621|CRISPRCasFinder matches to NZ_CP044185 (Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403) position: , mismatch: 0, identity: 1.0

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatatccgcccatcggcc	Protospacer
********************************

2. spacer 2.2|988702|32|NZ_CP014621|CRISPRCasFinder matches to NZ_CP029990 (Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591 plasmid pSA20121591.1, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

3. spacer 2.2|988702|32|NZ_CP014621|CRISPRCasFinder matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

4. spacer 2.2|988702|32|NZ_CP014621|CRISPRCasFinder matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

5. spacer 2.2|988702|32|NZ_CP014621|CRISPRCasFinder matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

6. spacer 1.4|971750|32|NZ_CP014621|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018865 (Arthrobacter crystallopoietes strain DSM 20117 plasmid pLDW-10, complete sequence) position: , mismatch: 6, identity: 0.812

taccgcgacaccgtcaacgacagcaaccactt	CRISPR spacer
aaccgcgtcaccggcaacgacagcaaccggct	Protospacer
 ****** ***** **************. .*

7. spacer 1.7|971933|32|NZ_CP014621|PILER-CR,CRISPRCasFinder,CRT matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 6, identity: 0.812

tgtcttaactccattgctgagtcga-ttgtgaa	CRISPR spacer
tgctttaactccatttttgagtcgatttgtgc-	Protospacer
**..*********** .******** *****

8. spacer 1.7|971933|32|NZ_CP014621|PILER-CR,CRISPRCasFinder,CRT matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 6, identity: 0.812

tgtcttaactccattgctgagtcga-ttgtgaa	CRISPR spacer
tgctttaactccatttttgagtcgatttgtgc-	Protospacer
**..*********** .******** *****

9. spacer 2.2|988702|32|NZ_CP014621|CRISPRCasFinder matches to NZ_CP040720 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgagaaacgcctggatctccgcccaccgccg	Protospacer
*** . *********** ********.** *

10. spacer 1.4|971750|32|NZ_CP014621|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015738 (Shinella sp. HZN7 plasmid pShin-02, complete sequence) position: , mismatch: 8, identity: 0.75

taccgcgacaccgtcaacgacagcaaccactt	CRISPR spacer
cgccgcgacaccgtcaacgacatcatcctgcc	Protospacer
..******************** ** **  ..

11. spacer 1.4|971750|32|NZ_CP014621|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010410 (Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

taccgcgacaccgtcaacgacagcaaccactt--	CRISPR spacer
gacagcgacaccgtcatcgacagca--cggtgaa	Protospacer
 ** ************ ********  *. *

12. spacer 1.10|972116|32|NZ_CP014621|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025224 (Enterococcus sp. CR-Ec1 plasmid pCREc1, complete sequence) position: , mismatch: 8, identity: 0.75

tttttaaatccggacagaccctgtaacggatc	CRISPR spacer
tttttaaatccggaaagacactgtcaaaaaag	Protospacer
************** **** **** * ..*

13. spacer 1.12|972238|32|NZ_CP014621|CRISPRCasFinder,CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 8, identity: 0.75

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
ccagagcggcaaatggatttcgacgacctacg	Protospacer
*  ***.******* ***********   **

14. spacer 1.12|972238|32|NZ_CP014621|CRISPRCasFinder,CRT matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
ccagagcggcaaatggatttcgacgacctacg	Protospacer
*  ***.******* ***********   **

15. spacer 1.12|972238|32|NZ_CP014621|CRISPRCasFinder,CRT matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
ccagagcggcaaatggatttcgacgacctacg	Protospacer
*  ***.******* ***********   **

16. spacer 1.4|971750|32|NZ_CP014621|PILER-CR,CRISPRCasFinder,CRT matches to AP018399 (Xanthomonas phage XacN1 DNA, complete genome) position: , mismatch: 9, identity: 0.719

taccgcgacaccgtcaacgacagcaaccactt	CRISPR spacer
acttgcgacaccgacaccgacagcaacccgta	Protospacer
  ..********* ** ***********  *

17. spacer 1.4|971750|32|NZ_CP014621|PILER-CR,CRISPRCasFinder,CRT matches to NC_030917 (Gordonia phage OneUp, complete genome) position: , mismatch: 9, identity: 0.719

taccgcgacaccgtcaacgacagcaaccactt	CRISPR spacer
gtgagctacaccgtcaacgacatcaacgagta	Protospacer
    ** *************** **** * *

18. spacer 1.12|972238|32|NZ_CP014621|CRISPRCasFinder,CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

19. spacer 1.12|972238|32|NZ_CP014621|CRISPRCasFinder,CRT matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

20. spacer 1.12|972238|32|NZ_CP014621|CRISPRCasFinder,CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

21. spacer 1.12|972238|32|NZ_CP014621|CRISPRCasFinder,CRT matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

22. spacer 1.12|972238|32|NZ_CP014621|CRISPRCasFinder,CRT matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

23. spacer 1.12|972238|32|NZ_CP014621|CRISPRCasFinder,CRT matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

24. spacer 1.12|972238|32|NZ_CP014621|CRISPRCasFinder,CRT matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

25. spacer 1.12|972238|32|NZ_CP014621|CRISPRCasFinder,CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

26. spacer 1.12|972238|32|NZ_CP014621|CRISPRCasFinder,CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

27. spacer 1.12|972238|32|NZ_CP014621|CRISPRCasFinder,CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

28. spacer 1.4|971750|32|NZ_CP014621|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018784 (Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence) position: , mismatch: 10, identity: 0.688

taccgcgacaccgtcaacgacagcaaccactt	CRISPR spacer
agccgcgccaccggcaacgacagcacgaagac	Protospacer
 .***** ***** ***********   *  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1154688 : 1160492

Enterobacteria_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021000674.1\|1154688_1157022_-	hypothetical protein	Q7M2A8	Enterobacteria_phage	0.0e+00	84.5
WP_000743150.1\|1157036_1157357_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_001604623.1\|1157353_1157581_-	hypothetical protein	NA	NA	NA	NA
WP_023243884.1\|1157577_1158129_-	ash family protein	Q7M2A7	Enterobacteria_phage	8.6e-36	71.3
WP_001604627.1\|1158125_1158392_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	1.7e-29	70.5
WP_039500098.1\|1158929_1159667_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	3.2e-78	63.6
WP_000984211.1\|1159663_1159909_+	transcriptional regulator	Q7M294	Enterobacteria_phage	6.3e-31	76.5
WP_000210078.1\|1159925_1160492_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	7.7e-56	62.7

DBSCAN-SWA_2

1164031 : 1227126

Salmonella_phage(90.91%)

tRNA,lysis,plate,terminase,tail,portal,capsid,head,integrase

attL 1163859:1163905|attR 1198069:1198115

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1163859:1163905	attL	NA	NA	NA	NA
WP_006493480.1\|1164031_1165258_-	hypothetical protein	E5G6K9	Salmonella_phage	3.6e-151	65.4
WP_006493482.1\|1165264_1166281_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	5.0e-191	95.0
WP_023136550.1\|1166282_1166915_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	5.8e-113	96.7
WP_000102106.1\|1167034_1167277_+	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	2.3e-38	98.8
WP_006493486.1\|1167309_1167819_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	3.5e-84	93.5
WP_000794278.1\|1167905_1168181_-	hypothetical protein	NA	NA	NA	NA
WP_001528723.1\|1168265_1168460_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	5.3e-25	84.1
WP_000963476.1\|1168423_1168765_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	6.0e-48	84.1
WP_001178763.1\|1168832_1169060_+	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	8.1e-17	64.0
WP_000785514.1\|1169059_1169287_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	5.4e-21	66.7
WP_006493488.1\|1169283_1170141_+	DNA adenine methylase	E5G6L8	Salmonella_phage	4.6e-113	69.8
WP_006493489.1\|1170137_1172531_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	88.8
WP_001749759.1\|1172550_1172778_-	hypothetical protein	NA	NA	NA	NA
WP_001749760.1\|1172915_1173104_+	hypothetical protein	E5G6M0	Salmonella_phage	5.7e-24	91.7
WP_006493490.1\|1173434_1174637_+	DNA cytosine methyltransferase	M1PSQ0	Streptococcus_phage	5.6e-64	37.1
WP_006493491.1\|1174599_1175517_+	restriction endonuclease	NA	NA	NA	NA
WP_006493493.1\|1175563_1176598_-\|portal	phage portal protein	E5G6M3	Salmonella_phage	4.1e-188	94.8
WP_006493495.1\|1176597_1178364_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	96.6
WP_006493498.1\|1178506_1179340_+\|capsid	GPO family capsid scaffolding protein	E5G6M5	Salmonella_phage	1.1e-127	97.1
WP_000730754.1\|1179356_1180424_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	2.8e-192	98.0
WP_000059169.1\|1180427_1181078_+	hypothetical protein	A0A1S6KZX1	Salmonella_phage	1.6e-113	98.6
WP_000673541.1\|1181171_1181636_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	7.9e-83	96.8
WP_000868184.1\|1181635_1181839_+\|tail	tail protein X	E5G6M9	Salmonella_phage	3.8e-34	100.0
WP_000171565.1\|1181842_1182058_+	hypothetical protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
WP_006493502.1\|1182038_1182548_+	lysozyme	A0A1S6KZY9	Salmonella_phage	3.2e-93	97.6
WP_000871620.1\|1182552_1182927_+	hypothetical protein	NA	NA	NA	NA
WP_001648763.1\|1182923_1183352_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	2.6e-64	95.0
WP_001039964.1\|1183447_1183879_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	4.0e-73	95.1
WP_000343939.1\|1183871_1184318_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	3.8e-66	89.7
WP_000993750.1\|1184386_1184965_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.5e-107	99.0
WP_006493507.1\|1184961_1185321_+\|plate	baseplate assembly protein W	E5G6N7	Salmonella_phage	6.3e-56	92.4
WP_006493508.1\|1185307_1186216_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	7.2e-157	97.7
WP_001086802.1\|1186208_1186814_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.1e-116	98.5
WP_023214802.1\|1186810_1188619_+	Fels-2 prophage Pin	A0A1B0V7G4	Salmonella_phage	7.3e-209	82.2
WP_001287104.1\|1188625_1189033_+\|tail	tail assembly protein	A0A1B0V844	Salmonella_phage	6.7e-62	85.2
WP_006501158.1\|1189036_1189654_-\|tail	tail fiber assembly protein	A0A1B0VCD0	Salmonella_phage	1.6e-94	84.1
WP_077908780.1\|1189623_1190469_-	hypothetical protein	A0A1B0VFW4	Salmonella_phage	1.1e-114	84.4
WP_006501163.1\|1190438_1190996_+	serine-type DNA invertase Fin	A0A1S6L009	Salmonella_phage	9.4e-99	98.9
WP_006501164.1\|1191098_1192271_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.7e-222	99.5
WP_001207653.1\|1192280_1192796_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	2.7e-92	99.4
WP_001280962.1\|1192850_1193153_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	2.5e-45	100.0
WP_000763316.1\|1193167_1193287_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	1.8e-15	100.0
WP_006501165.1\|1193279_1196087_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	98.3
WP_000980409.1\|1196083_1196569_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	8.3e-67	99.2
WP_006501166.1\|1196565_1197666_+	phage late control D family protein	E5G6Q3	Salmonella_phage	9.0e-194	95.6
WP_000980498.1\|1197734_1197953_+	hypothetical protein	Q53ZE7	Salmonella_virus	2.1e-38	100.0
WP_072101134.1\|1198504_1199668_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
1198069:1198115	attR	NA	NA	NA	NA
WP_023244174.1\|1199675_1201856_-	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	1.3e-18	34.0
WP_023243957.1\|1201852_1203262_-	TolC family outer membrane protein	NA	NA	NA	NA
WP_038389487.1\|1203326_1214801_-	biofilm-associated protein BapA	NA	NA	NA	NA
WP_001518569.1\|1215420_1215903_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
WP_000242603.1\|1216052_1216529_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_001112990.1\|1216518_1216809_+	RnfH family protein	NA	NA	NA	NA
WP_001203445.1\|1216974_1217313_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_001525072.1\|1217461_1219123_-	DNA repair protein RecN	NA	NA	NA	NA
WP_001059155.1\|1219208_1220087_-	NAD(+) kinase	NA	NA	NA	NA
WP_001518875.1\|1220209_1220800_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_023243603.1\|1220834_1221440_-	hypothetical protein	NA	NA	NA	NA
WP_127172650.1\|1221560_1222847_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001537507.1\|1222866_1223658_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_000460052.1\|1223823_1225185_+	signal recognition particle protein	NA	NA	NA	NA
WP_000256453.1\|1225498_1225747_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_000043266.1\|1225765_1226314_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000469807.1\|1226358_1227126_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_3

1717277 : 1726448

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569166.1\|1717277_1718225_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2
WP_000824854.1\|1718208_1718940_+	ABC transporter permease	NA	NA	NA	NA
WP_001261696.1\|1718920_1719028_-	protein YohO	NA	NA	NA	NA
WP_001240418.1\|1719087_1719819_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_023243038.1\|1720041_1721727_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.9e-278	91.1
WP_000598637.1\|1721723_1722443_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950413.1\|1722489_1722957_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_001197951.1\|1723013_1723544_-	YehR family lipoprotein	NA	NA	NA	NA
WP_000703137.1\|1723715_1724174_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_000195332.1\|1724414_1726448_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_4

1796672 : 1802969

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023244537.1\|1796672_1798076_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	26.5
WP_000981469.1\|1798253_1799147_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_000697846.1\|1799523_1800609_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
WP_001023662.1\|1800608_1801508_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.4e-30	36.3
WP_023243995.1\|1801555_1802434_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.3e-107	64.1
WP_001100808.1\|1802438_1802969_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.8e-52	57.1

DBSCAN-SWA_5

1910189 : 1921574

Stenotrophomonas_phage(25.0%)

integrase

attL 1901479:1901493|attR 1919146:1919160

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1901479:1901493	attL	NA	NA	NA	NA
WP_023244267.1\|1910189_1911452_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.5e-75	41.3
WP_023243861.1\|1912097_1912388_-	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.8e-08	49.1
WP_000598920.1\|1912759_1913557_-	DgsA anti-repressor MtfA	NA	NA	NA	NA
WP_000500830.1\|1914037_1914199_+	hypothetical protein	NA	NA	NA	NA
WP_023243860.1\|1914325_1914745_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_000457663.1\|1914747_1916016_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	9.3e-227	91.9
WP_000208509.1\|1916470_1916683_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_024131163.1\|1916693_1916882_+	hypothetical protein	NA	NA	NA	NA
WP_001080661.1\|1917141_1918335_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	3.0e-110	56.2
WP_000107435.1\|1918983_1919295_+	hypothetical protein	NA	NA	NA	NA
1919146:1919160	attR	NA	NA	NA	NA
WP_023243859.1\|1919374_1920070_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
WP_023243858.1\|1920143_1921574_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_6

2024842 : 2084715

Salmonella_phage(19.64%)

integrase,tail,head,lysis

attL 2072144:2072157|attR 2087120:2087133

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000856224.1\|2024842_2025073_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
WP_000168393.1\|2025210_2025585_+	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_072101102.1\|2025585_2026461_+	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_000722368.1\|2026477_2026831_+	YebY family protein	NA	NA	NA	NA
WP_046722458.1\|2027204_2028284_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.2e-105	55.2
WP_031603794.1\|2028264_2028537_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.8e-10	39.7
WP_077944168.1\|2028597_2028834_-	hypothetical protein	NA	NA	NA	NA
WP_001524360.1\|2029124_2029304_-	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	4.3e-13	62.1
WP_063267783.1\|2029851_2030277_-	HNH endonuclease	C6ZR29	Salmonella_phage	5.2e-65	83.8
WP_063267784.1\|2030280_2030754_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	7.3e-68	78.8
WP_063267849.1\|2030753_2031140_-	ead/Ea22-like family protein	C6ZR30	Salmonella_phage	1.9e-37	78.4
WP_063267785.1\|2031142_2031457_-	hypothetical protein	A0A222YY67	Escherichia_phage	1.0e-33	59.0
WP_063267786.1\|2031492_2032323_-	recombination protein RecT	A0A1P8DTF2	Proteus_phage	1.0e-104	72.0
WP_063267787.1\|2032315_2035006_-	exodeoxyribonuclease VIII	Q9QF34	Lambdoid_phage	5.2e-118	71.8
WP_000799629.1\|2035146_2035482_-	hypothetical protein	NA	NA	NA	NA
WP_000682660.1\|2035557_2035764_-	cell division inhibitor protein	I6PBM9	Cronobacter_phage	3.0e-10	45.6
WP_000103933.1\|2035768_2036044_-	hypothetical protein	NA	NA	NA	NA
WP_024135672.1\|2036304_2036484_+	hypothetical protein	NA	NA	NA	NA
WP_001574209.1\|2036914_2037313_-	helix-turn-helix domain-containing protein	K7PH19	Enterobacteria_phage	1.2e-18	56.0
WP_001033909.1\|2037411_2037666_+	helix-turn-helix transcriptional regulator	K7PKH4	Enterobacteria_phage	1.2e-16	59.4
WP_046722454.1\|2037652_2038147_+	hypothetical protein	NA	NA	NA	NA
WP_046722453.1\|2038194_2039202_+	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	3.2e-129	70.2
WP_161490513.1\|2039113_2039656_+	replication protein	A0A0U2JGJ0	Escherichia_phage	5.8e-69	76.8
WP_052909347.1\|2039668_2040064_+	DUF977 family protein	A0A088CBK9	Shigella_phage	1.7e-17	37.8
WP_052909348.1\|2040060_2040333_+	hypothetical protein	NA	NA	NA	NA
WP_024150652.1\|2040539_2040692_+	Hok/Gef family protein	NA	NA	NA	NA
WP_133177248.1\|2040884_2041190_+	hypothetical protein	NA	NA	NA	NA
WP_052909349.1\|2041253_2041853_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	1.1e-97	83.4
WP_021000145.1\|2041849_2042044_+	hypothetical protein	S4TNP0	Salmonella_phage	6.1e-13	61.5
WP_000861020.1\|2042040_2042322_+	DUF1364 family protein	K7P7Q1	Enterobacteria_phage	1.7e-35	79.1
WP_042847930.1\|2042318_2042873_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	2.8e-63	64.6
WP_023220365.1\|2043118_2043295_+	type II toxin-antitoxin system HicA family toxin	A0A0M3LQ86	Mannheimia_phage	1.2e-12	60.3
WP_052909352.1\|2043345_2043753_+	type II toxin-antitoxin system HicB family antitoxin	F1C593	Cronobacter_phage	4.0e-38	62.2
WP_001525456.1\|2043902_2044205_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_001525444.1\|2044182_2044722_+	lysozyme	K7PLY1	Enterobacteria_phage	1.3e-76	70.6
WP_046722451.1\|2044822_2045293_+\|lysis	lysis protein	Q56118	Enterobacteria_phage	2.9e-61	79.2
WP_046722450.1\|2045366_2045570_-	hypothetical protein	NA	NA	NA	NA
WP_063267789.1\|2045649_2046042_-	hypothetical protein	NA	NA	NA	NA
WP_133177249.1\|2046082_2046433_-	hypothetical protein	NA	NA	NA	NA
WP_046722447.1\|2046761_2046962_+	hypothetical protein	NA	NA	NA	NA
WP_046722446.1\|2046965_2047595_+	hypothetical protein	A0A0M3ULJ9	Salmonella_phage	1.5e-108	98.6
WP_052909356.1\|2047597_2049217_+	TerL protein	A0A0M5M1R6	Salmonella_phage	5.6e-261	81.0
WP_001525458.1\|2049216_2050737_+	DUF1073 domain-containing protein	A0A2R3UAL5	Myoviridae_environmental_samples	1.3e-105	44.1
WP_001525462.1\|2050777_2051467_+\|head	head morphogenesis protein	H9C0V1	Aeromonas_phage	4.5e-58	50.0
WP_063267790.1\|2051463_2052810_+	DUF2213 domain-containing protein	A0A219YCD3	Aeromonas_phage	3.2e-68	37.4
WP_046722443.1\|2052811_2053294_+	hypothetical protein	A0A1X9SFC3	Acinetobacter_phage	2.4e-26	48.8
WP_001031913.1\|2053293_2054322_+	hypothetical protein	A0A219YBB0	Aeromonas_phage	2.3e-82	48.7
WP_063267791.1\|2054325_2054673_+	hypothetical protein	H9C0V9	Aeromonas_phage	1.7e-10	39.2
WP_000537613.1\|2054679_2055135_+	DUF4054 domain-containing protein	H9C0W0	Aeromonas_phage	9.6e-17	46.0
WP_001525439.1\|2055128_2055713_+	hypothetical protein	H9C0W2	Aeromonas_phage	7.2e-17	30.6
WP_001048640.1\|2055709_2056075_+	hypothetical protein	A0A077KAW7	Edwardsiella_phage	2.0e-20	40.5
WP_001525438.1\|2056059_2056605_+	hypothetical protein	NA	NA	NA	NA
WP_001525460.1\|2056585_2058070_+	DUF3383 domain-containing protein	A0A077KGV4	Edwardsiella_phage	4.7e-89	38.4
WP_063267792.1\|2058070_2058517_+	hypothetical protein	Q2NPD1	Xanthomonas_phage	5.3e-20	39.7
WP_063267793.1\|2058516_2058921_+	hypothetical protein	H9C0W7	Aeromonas_phage	1.2e-18	43.1
WP_000386822.1\|2058965_2059145_+	hypothetical protein	NA	NA	NA	NA
WP_063267794.1\|2059128_2061300_+	transglycosylase SLT domain-containing protein	A0A0M4REK7	Salmonella_phage	1.4e-49	67.1
WP_063267795.1\|2061296_2062007_+	hypothetical protein	A0A077KGW3	Edwardsiella_phage	1.9e-27	34.6
WP_001525448.1\|2062006_2062309_+	hypothetical protein	A0A077K9U4	Edwardsiella_phage	7.0e-24	49.5
WP_001525442.1\|2062305_2063175_+	hypothetical protein	A0A077KC17	Edwardsiella_phage	4.1e-32	33.1
WP_023219640.1\|2063155_2063833_+	hypothetical protein	A0A077KAY0	Edwardsiella_phage	4.1e-32	36.4
WP_001191865.1\|2063845_2064202_+	hypothetical protein	A0A077KCA1	Edwardsiella_phage	1.6e-19	49.1
WP_052909358.1\|2064198_2065440_+	hypothetical protein	A0A077KGW9	Edwardsiella_phage	9.1e-102	49.9
WP_022742713.1\|2065441_2066044_+	DUF2612 domain-containing protein	H9C0Y0	Aeromonas_phage	5.9e-30	43.2
WP_063267796.1\|2066033_2067494_+\|tail	tail fiber protein	A0A0M3ULH6	Salmonella_phage	2.7e-44	76.3
WP_078097279.1\|2067994_2068315_+	hypothetical protein	A0A0M4QWS3	Salmonella_phage	9.3e-51	85.8
WP_001525039.1\|2068304_2068874_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.1e-89	85.7
WP_046722438.1\|2069024_2069879_+	protein YibB	NA	NA	NA	NA
WP_046722437.1\|2069951_2071493_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
2072144:2072157	attL	NA	NA	NA	NA
WP_020438172.1\|2072264_2073344_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	6.3e-99	52.0
WP_023244250.1\|2073340_2074447_-	exodeoxyribonuclease 8	Q9QF34	Lambdoid_phage	1.4e-53	65.0
WP_001013467.1\|2074477_2074708_+	hypothetical protein	Q8HA86	Salmonella_phage	6.1e-28	93.7
WP_001050883.1\|2074761_2075295_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	5.4e-11	43.0
WP_000789530.1\|2075551_2075719_-	lytic enzyme	NA	NA	NA	NA
WP_001521334.1\|2075783_2075972_-	hypothetical protein	NA	NA	NA	NA
WP_063267797.1\|2076026_2076518_+	DUF1441 family protein	Q9EYD0	Enterobacteria_phage	1.6e-41	56.2
WP_023244117.1\|2077070_2077667_+	hypothetical protein	Q1MVL8	Enterobacteria_phage	7.8e-35	43.1
WP_001751604.1\|2079219_2079420_-	hypothetical protein	NA	NA	NA	NA
WP_001574229.1\|2079987_2080113_+	hypothetical protein	NA	NA	NA	NA
WP_000848069.1\|2081260_2081875_-	disulfide bond formation protein B	NA	NA	NA	NA
WP_000480735.1\|2081884_2082043_-	hypothetical protein	NA	NA	NA	NA
WP_001233445.1\|2082175_2083090_-	DMT family transporter	NA	NA	NA	NA
WP_023244119.1\|2084385_2084715_-\|integrase	tyrosine-type recombinase/integrase	A0A1V0E5M7	Salmonella_phage	6.5e-15	43.4
2087120:2087133	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2685207 : 2765637

104

Salmonella_phage(56.67%)

integrase,tRNA,protease,plate,terminase,tail,portal,capsid,head,transposase,holin

attL 2705845:2705861|attR 2765156:2765172

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023893413.1\|2685207_2685726_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_000272239.1\|2685722_2685830_-	hypothetical protein	NA	NA	NA	NA
WP_000460698.1\|2686035_2686482_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_000579793.1\|2686461_2687256_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000205341.1\|2687356_2688541_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_001222527.1\|2688659_2689007_+	DUF488 domain-containing protein	NA	NA	NA	NA
WP_000487135.1\|2688992_2689304_-	hypothetical protein	NA	NA	NA	NA
WP_000673492.1\|2689372_2689624_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_001589065.1\|2689819_2689918_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_000512149.1\|2690056_2690305_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_001532438.1\|2690618_2691260_-	hypothetical protein	NA	NA	NA	NA
WP_000513733.1\|2691489_2691672_-	DUF1869 domain-containing protein	NA	NA	NA	NA
WP_001248993.1\|2691674_2692037_-	DUF1971 domain-containing protein	NA	NA	NA	NA
WP_000457190.1\|2692209_2692848_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_000617985.1\|2693043_2693589_-	chorismate mutase	NA	NA	NA	NA
WP_000908466.1\|2693671_2693827_+	hypothetical protein	NA	NA	NA	NA
WP_000208086.1\|2693905_2694154_+	hypothetical protein	NA	NA	NA	NA
WP_000190263.1\|2694408_2695257_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_001682351.1\|2695325_2695919_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000175797.1\|2696063_2696852_-	cryptic aminoglycoside nucleotidyltransferase ANT(3'')/ANT(9)	NA	NA	NA	NA
WP_001537483.1\|2696959_2697607_-	metal-binding protein ZinT	NA	NA	NA	NA
WP_001183699.1\|2697803_2698130_-	four-helix bundle copper-binding protein	NA	NA	NA	NA
WP_001618317.1\|2698323_2699457_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_000947459.1\|2699538_2700129_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_000950212.1\|2700122_2700920_-	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	2.8e-11	31.2
WP_000966637.1\|2700913_2701726_-	ABC transporter permease	NA	NA	NA	NA
WP_001748353.1\|2701715_2702690_-	ABC transporter permease	NA	NA	NA	NA
WP_000946091.1\|2702689_2704324_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000182479.1\|2705005_2705320_+	hypothetical protein	NA	NA	NA	NA
WP_000929973.1\|2705468_2705999_+	cytochrome b	A0A0U2QLA7	Escherichia_phage	2.8e-36	70.5
2705845:2705861	attL	NA	NA	NA	NA
WP_021000256.1\|2706081_2707125_-	exo-alpha-sialidase	NA	NA	NA	NA
WP_001218120.1\|2707463_2707931_-	Hsp20 family protein	NA	NA	NA	NA
WP_000927827.1\|2708083_2708356_-	hypothetical protein	NA	NA	NA	NA
WP_000758947.1\|2708555_2708681_-	lipoprotein	NA	NA	NA	NA
WP_000977725.1\|2709058_2709403_+	c-type lysozyme inhibitor	NA	NA	NA	NA
WP_079007565.1\|2709949_2710918_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	7.4e-176	93.8
WP_000789471.1\|2711690_2712248_-	virulence membrane protein PagC	Q9LA63	Enterobacterial_phage	1.0e-15	33.0
WP_001535993.1\|2713059_2713323_+	virulence protein PagD	NA	NA	NA	NA
WP_001537306.1\|2713454_2713667_+	cold shock-like protein CspF	NA	NA	NA	NA
WP_001520581.1\|2714081_2714603_+	ricin-type beta-trefoil lectin domain protein	NA	NA	NA	NA
WP_000497451.1\|2714793_2715033_+	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6
WP_001033398.1\|2715522_2716311_+	hypothetical protein	NA	NA	NA	NA
WP_021000253.1\|2717306_2718431_-	type III secretion system effector SopF	NA	NA	NA	NA
WP_012218897.1\|2718878_2719091_-	isocitrate dehydrogenase	Q77Z09	Phage_21	2.5e-20	90.7
WP_000334550.1\|2719344_2720016_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.8e-80	61.3
WP_023171144.1\|2720008_2721277_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	7.3e-240	96.0
WP_023171145.1\|2721279_2721699_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.8e-36	59.1
WP_077909836.1\|2722035_2722248_-	hypothetical protein	A0A1B0V844	Salmonella_phage	9.3e-07	62.9
WP_023171148.1\|2722372_2723506_+	acyltransferase	A0A2H4JA46	uncultured_Caudovirales_phage	1.6e-36	33.0
WP_023171149.1\|2723543_2723756_-	hypothetical protein	F1BUK1	Cronobacter_phage	1.6e-11	60.9
WP_094445164.1\|2723745_2724351_-\|tail	tail fiber assembly protein	Q8HAB3	Salmonella_phage	1.4e-100	93.1
WP_023244258.1\|2724320_2725574_-	hypothetical protein	A0A1S6KZZ0	Salmonella_phage	4.6e-178	95.6
WP_023171039.1\|2725560_2726148_-	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	1.4e-113	99.0
WP_023215805.1\|2726150_2727230_-\|plate	baseplate J/gp47 family protein	A0A192Y6E4	Salmonella_phage	1.2e-203	99.2
WP_000605051.1\|2727222_2727636_-	hypothetical protein	A0A192Y6D0	Salmonella_phage	3.1e-75	100.0
WP_001273648.1\|2727640_2728174_-\|plate	phage baseplate assembly protein	A0A192Y8K5	Salmonella_phage	8.4e-97	100.0
WP_001066631.1\|2728173_2729232_-	hypothetical protein	A0A192Y7L7	Salmonella_phage	6.6e-202	99.7
WP_023171041.1\|2729228_2730569_-\|tail	tail/DNA circulation protein	A0A192Y5U9	Salmonella_phage	1.1e-249	99.3
WP_023171042.1\|2730602_2732531_-\|tail	phage tail tape measure protein	A0A192Y6D8	Salmonella_phage	0.0e+00	99.1
WP_000588852.1\|2732615_2732942_-\|tail	phage tail assembly protein	Q8HAC3	Salmonella_phage	2.3e-52	99.1
WP_000515952.1\|2732938_2733295_-\|tail	tail protein	A0A192Y8K0	Salmonella_phage	2.6e-62	100.0
WP_001007994.1\|2733294_2734791_-\|tail	tail sheath protein	Q8HAC5	Salmonella_phage	3.0e-277	99.4
WP_000497755.1\|2734780_2734945_-	DUF2635 domain-containing protein	Q8HAC6	Salmonella_phage	8.4e-24	96.3
WP_001241332.1\|2734966_2735512_-	hypothetical protein	A0A192Y5U4	Salmonella_phage	3.6e-87	84.7
WP_023171043.1\|2735508_2736021_-	hypothetical protein	Q8HAC8	Salmonella_phage	6.2e-81	87.1
WP_023171044.1\|2735992_2736406_-\|head	phage head closure protein	A0A192Y6C2	Salmonella_phage	6.0e-50	74.8
WP_000886224.1\|2736417_2736741_-\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	2.2e-31	57.4
WP_023232348.1\|2736740_2736974_-	hypothetical protein	K7PHI6	Enterobacteria_phage	2.6e-10	66.0
WP_023171046.1\|2737017_2738235_-\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	4.6e-199	88.9
WP_023171047.1\|2738244_2739093_-\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	7.5e-132	88.2
WP_023171048.1\|2739106_2740411_-\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	1.9e-219	86.6
WP_077909829.1\|2740410_2742153_-\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	5.3e-140	44.5
WP_023171050.1\|2742106_2742571_-\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	1.7e-48	62.1
WP_024147208.1\|2742703_2743048_-	HNH endonuclease	K7P7P6	Enterobacteria_phage	8.8e-47	73.9
WP_001070544.1\|2743182_2743410_-	hypothetical protein	NA	NA	NA	NA
WP_000495545.1\|2743506_2743884_-	hypothetical protein	Q6UAR9	Klebsiella_phage	2.2e-43	68.5
WP_023171052.1\|2743926_2744466_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	1.3e-07	49.3
WP_023171053.1\|2744462_2745077_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	1.4e-108	93.1
WP_000250465.1\|2745076_2745358_-\|holin	phage holin family protein	A0A0U2SHD1	Escherichia_phage	8.2e-19	51.1
WP_023171055.1\|2745344_2745731_-	hypothetical protein	A0A192Y8P2	Salmonella_phage	8.9e-56	92.2
WP_023171056.1\|2745881_2746805_+	hypothetical protein	A0A1B5FPA3	Escherichia_phage	1.6e-42	56.4
WP_023171057.1\|2746911_2747742_-	antitermination protein	A0A1B5FPA5	Escherichia_phage	5.0e-56	43.3
WP_024147207.1\|2747772_2748762_-	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	1.5e-192	98.8
WP_023171059.1\|2748769_2749630_-	KilA-N domain-containing protein	Q8HA92	Salmonella_phage	2.7e-161	98.6
WP_023171060.1\|2749646_2750036_-	RusA family crossover junction endodeoxyribonuclease	A0A192Y8N5	Salmonella_phage	7.1e-69	97.7
WP_023171061.1\|2750032_2750926_-	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	8.7e-163	93.9
WP_023171062.1\|2750925_2751408_-	PerC family transcriptional regulator	Q8HA95	Salmonella_phage	1.6e-86	98.8
WP_000104924.1\|2751409_2752369_-	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	1.6e-117	80.9
WP_000620702.1\|2752365_2752590_-	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
WP_023244168.1\|2752586_2753729_-	antirepressor	A0A1C9IHV9	Salmonella_phage	6.3e-182	87.4
WP_000509731.1\|2753725_2754280_-	hypothetical protein	A0A1C9II13	Salmonella_phage	6.9e-102	100.0
WP_001191666.1\|2754308_2754533_-	helix-turn-helix transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
WP_001020640.1\|2754630_2755326_+	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	4.6e-127	99.6
WP_000997190.1\|2756140_2756512_+	hypothetical protein	Q8HAA1	Salmonella_phage	1.1e-63	100.0
WP_023171064.1\|2756569_2757397_+	YfdQ family protein	Q8HAA2	Salmonella_phage	4.1e-151	98.5
WP_000008351.1\|2757533_2758073_+	hypothetical protein	A0A192Y8M4	Salmonella_phage	2.6e-98	100.0
WP_023171066.1\|2758874_2759348_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	2.1e-67	78.8
WP_000089141.1\|2760108_2760345_+	excisionase	NA	NA	NA	NA
WP_000741325.1\|2760334_2761477_+\|integrase	tyrosine-type recombinase/integrase	O21929	Phage_21	8.2e-174	80.3
WP_000444509.1\|2761590_2762841_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	6.7e-20	92.6
WP_001249412.1\|2763012_2763678_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000825957.1\|2763674_2764004_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_023227248.1\|2764015_2764477_+	NUDIX hydrolase	NA	NA	NA	NA
WP_000004540.1\|2764530_2765637_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
2765156:2765172	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3037181 : 3046263

Ralstonia_phage(16.67%)

protease,integrase

attL 3035574:3035586|attR 3054760:3054772

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3035574:3035586	attL	NA	NA	NA	NA
WP_024155556.1\|3037181_3038423_-\|integrase	site-specific integrase	A0A077KET4	Ralstonia_phage	2.5e-75	40.7
WP_023243338.1\|3038950_3039328_+\|integrase	phage integrase	NA	NA	NA	NA
WP_001117984.1\|3039489_3039687_+	hypothetical protein	NA	NA	NA	NA
WP_000934064.1\|3039899_3042176_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_000520789.1\|3042206_3042527_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000447499.1\|3042850_3043072_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000125893.1\|3043201_3045148_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	9.1e-40	42.3
WP_023202044.1\|3045144_3046263_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9
3054760:3054772	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3404375 : 3444023

Salmonella_phage(47.27%)

protease,tail,portal,coat,integrase

attL 3402793:3402810|attR 3449425:3449442

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3402793:3402810	attL	NA	NA	NA	NA
WP_052909395.1\|3404375_3406298_+	acyltransferase	C6ZR20	Salmonella_phage	0.0e+00	99.5
WP_072106194.1\|3406643_3408761_-\|tail	phage tail protein	C6ZR19	Salmonella_phage	0.0e+00	99.3
WP_052909394.1\|3408916_3410887_-	hypothetical protein	C6ZR18	Salmonella_phage	0.0e+00	99.1
WP_052909416.1\|3410886_3412209_-	phage DNA ejection protein	C6ZR17	Salmonella_phage	8.2e-234	96.8
WP_052909393.1\|3412251_3412941_-	hypothetical protein	B9UDK9	Salmonella_phage	8.1e-92	91.7
WP_052909392.1\|3412943_3413399_-	DUF2824 family protein	E7C9U3	Salmonella_phage	1.1e-86	98.7
WP_052909391.1\|3413398_3414100_-	hypothetical protein	C6ZR14	Salmonella_phage	6.1e-71	94.0
WP_052909390.1\|3414103_3415522_-	hypothetical protein	I1TEJ1	Salmonella_phage	1.1e-271	98.1
WP_023223387.1\|3415481_3415982_-	hypothetical protein	I1TEJ0	Salmonella_phage	4.2e-90	99.4
WP_052909389.1\|3415965_3416175_-	hypothetical protein	A0A192Y697	Salmonella_phage	1.7e-29	88.4
WP_052909388.1\|3416213_3417509_-\|coat	coat protein	A0A0M5M1J5	Salmonella_phage	2.2e-244	99.8
WP_052909387.1\|3417508_3418420_-	scaffolding protein	A0A192Y6T4	Salmonella_phage	6.3e-161	99.7
WP_052909386.1\|3418433_3420611_-\|portal	portal protein	Q5C835	Enterobacteria_phage	0.0e+00	99.3
WP_046722394.1\|3420610_3422059_-	DNA packaging protein	Q2A0C1	Sodalis_phage	2.7e-206	71.3
WP_045718261.1\|3422027_3422531_-	hypothetical protein	A0A2K8HN72	Pseudomonas_phage	7.3e-26	47.8
WP_046722393.1\|3422543_3422948_-	hypothetical protein	C6ZR73	Salmonella_phage	2.0e-66	98.5
WP_046722392.1\|3422947_3423337_-	hypothetical protein	Q76H27	Enterobacteria_phage	4.3e-74	98.4
WP_052909385.1\|3423340_3423583_-	DUF2560 family protein	Q76H60	Enterobacteria_phage	1.1e-32	98.8
WP_046722391.1\|3423933_3424422_-	GIY-YIG nuclease family protein	K7P7S3	Enterobacteria_phage	3.4e-84	96.9
WP_000182933.1\|3424784_3425072_-	hypothetical protein	NA	NA	NA	NA
WP_052909415.1\|3425295_3425763_-	glycoside hydrolase family protein	H9C148	Vibrio_phage	1.1e-28	45.8
WP_024133454.1\|3425737_3425965_-	hypothetical protein	NA	NA	NA	NA
WP_001235461.1\|3426408_3427032_-	antitermination protein	K7PM87	Enterobacteria_phage	3.0e-114	100.0
WP_000994516.1\|3427028_3427217_-	protein ninH	A5VW84	Enterobacteria_phage	5.5e-27	100.0
WP_001008200.1\|3427213_3427576_-	RusA family crossover junction endodeoxyribonuclease	K7P6I9	Enterobacteria_phage	9.2e-63	100.0
WP_052909383.1\|3427572_3427863_-	DUF1364 domain-containing protein	A0A192Y6R9	Salmonella_phage	6.5e-51	99.0
WP_001549091.1\|3427855_3428068_-	hypothetical protein	K7PK10	Enterobacteria_phage	1.1e-34	98.6
WP_000950973.1\|3428060_3428237_-	protein ninF	G9L691	Escherichia_phage	5.7e-26	100.0
WP_052909382.1\|3428229_3428580_-	DUF2591 family protein	A0A2D1GLI3	Escherichia_phage	4.0e-39	69.5
WP_000113767.1\|3428582_3428759_-	NinE family protein	A0A220NRK6	Escherichia_phage	7.9e-28	98.3
WP_000679699.1\|3428725_3428899_-	hypothetical protein	C6ZR56	Salmonella_phage	7.0e-29	93.0
WP_001629218.1\|3428895_3429768_-	phosphoadenosine phosphosulfate reductase family protein	I6R0S6	Salmonella_phage	6.7e-168	93.1
WP_052909414.1\|3429764_3430205_-	recombination protein NinB	A0A2I6PIF6	Escherichia_phage	4.0e-76	95.9
WP_052909381.1\|3430352_3430619_-	hypothetical protein	NA	NA	NA	NA
WP_052909380.1\|3430605_3430836_-	hypothetical protein	NA	NA	NA	NA
WP_052909379.1\|3430832_3432206_-	AAA family ATPase	Q76H51	Enterobacteria_phage	2.0e-243	96.3
WP_052909378.1\|3432202_3433036_-	replication protein	A0A1R3Y5R9	Salmonella_virus	7.9e-150	98.6
WP_001125981.1\|3433028_3433175_-	DUF2740 family protein	A0A075B8K7	Enterobacteria_phage	1.5e-19	100.0
WP_000424166.1\|3433209_3433488_-	transcriptional regulator	A0A220NRS4	Escherichia_phage	2.2e-40	93.5
WP_000067726.1\|3433595_3433811_-	helix-turn-helix transcriptional regulator	A0A0M4RTV8	Salmonella_phage	4.1e-34	100.0
WP_023177700.1\|3433929_3434592_+	LexA family transcriptional regulator	Q37946	Enterobacteria_phage	6.3e-126	100.0
WP_125866875.1\|3434946_3435129_+	hypothetical protein	A0A220NQW5	Salmonella_phage	6.3e-28	96.7
WP_052909377.1\|3435149_3435482_+	hypothetical protein	A0A1R3Y5R1	Salmonella_virus	1.3e-52	95.5
WP_052909376.1\|3435492_3435807_+	hypothetical protein	NA	NA	NA	NA
WP_052909375.1\|3435850_3436096_+	hypothetical protein	U5PUY0	Salmonella_phage	1.9e-19	62.3
WP_052909374.1\|3436132_3436420_+	hypothetical protein	Q76H36	Enterobacteria_phage	8.6e-48	96.8
WP_006831706.1\|3436749_3436908_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q76H38	Enterobacteria_phage	1.2e-22	98.1
WP_000156731.1\|3436888_3437077_+	DUF5444 family protein	I6S647	Salmonella_phage	3.7e-31	100.0
WP_046722386.1\|3437066_3437210_+	hypothetical protein	A0A1R3Y5R4	Salmonella_virus	2.1e-18	95.7
WP_046722385.1\|3437206_3437914_+	recombinase	I6R0N0	Salmonella_phage	1.3e-137	99.1
WP_046722384.1\|3437914_3438421_+	single-stranded DNA-binding protein	C6ZR36	Salmonella_phage	6.5e-91	98.8
WP_001016182.1\|3438429_3438978_+	3'-5' exoribonuclease	C6ZR35	Salmonella_phage	2.1e-106	100.0
WP_015995298.1\|3438993_3439287_+	DUF2856 family protein	C6ZR34	Salmonella_phage	1.9e-50	100.0
WP_071892267.1\|3439297_3439468_+	DUF2737 family protein	A0A220NQV6	Salmonella_phage	3.0e-24	98.2
WP_116585787.1\|3439464_3440055_+	Eae-like protein	Q5G8U6	Enterobacteria_phage	2.5e-25	51.0
WP_071892271.1\|3440051_3440861_+	ead/Ea22-like family protein	Q1MVF9	Enterobacteria_phage	4.1e-103	97.9
WP_001229203.1\|3440862_3441378_+	hypothetical protein	A0A0P0ZBM8	Stx2-converting_phage	2.4e-101	100.0
WP_052909373.1\|3441374_3441926_+	DUF551 domain-containing protein	G9L6G3	Escherichia_phage	1.0e-65	72.0
WP_052909372.1\|3441994_3442630_+	hypothetical protein	A0A075B8I7	Enterobacteria_phage	1.8e-106	87.7
WP_052909371.1\|3442859_3444023_+\|integrase	site-specific integrase	B9UDL9	Salmonella_phage	2.2e-222	96.9
3449425:3449442	attR	NA	NA	NA	NA

DBSCAN-SWA_10

3687587 : 3735050

Salmonella_phage(57.45%)

integrase,lysis,terminase,tail,head,transposase,holin

attL 3689185:3689203|attR 3731158:3731176

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095470817.1\|3687587_3688749_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-52	42.3
WP_023242996.1\|3688746_3689022_-	DUF4102 domain-containing protein	Q7M297	Enterobacteria_phage	1.4e-23	64.1
3689185:3689203	attL	NA	NA	NA	NA
WP_020898636.1\|3689752_3690490_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA
WP_000143174.1\|3690685_3691261_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.5e-96	91.0
WP_000049936.1\|3692792_3693473_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	8.1e-129	98.7
WP_063267817.1\|3693469_3694669_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	1.1e-213	97.2
WP_001270643.1\|3694669_3695023_-	hypothetical protein	A0A0M4R339	Salmonella_phage	2.1e-59	97.4
WP_000301076.1\|3695022_3695775_-	hypothetical protein	A0A0M5M1K7	Salmonella_phage	1.2e-93	71.7
WP_023135366.1\|3695997_3696363_+	hypothetical protein	NA	NA	NA	NA
WP_063267818.1\|3696382_3696715_-	hypothetical protein	A0A0M4RTY3	Salmonella_phage	2.9e-23	70.9
WP_063267819.1\|3696711_3697785_-	hypothetical protein	A0A0M4QX01	Salmonella_phage	1.3e-184	95.8
WP_063267820.1\|3697787_3698090_-	hypothetical protein	A0A0M4R5B7	Salmonella_phage	1.2e-52	99.0
WP_000353826.1\|3698089_3698665_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	2.4e-97	100.0
WP_063267821.1\|3698664_3700674_-	transglycosylase SLT domain-containing protein	A0A0M4REK7	Salmonella_phage	0.0e+00	99.7
WP_000389018.1\|3700851_3701304_-	hypothetical protein	A0A0M4S6U8	Salmonella_phage	5.1e-79	100.0
WP_000501635.1\|3701307_3701748_-	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	9.4e-78	100.0
WP_063267822.1\|3701758_3702910_-	DUF3383 family protein	A0A0M4RD26	Salmonella_phage	9.6e-215	99.7
WP_057935452.1\|3702912_3703479_-	hypothetical protein	A0A0M4R331	Salmonella_phage	8.9e-105	98.9
WP_001142474.1\|3703453_3703843_-	hypothetical protein	A0A0M3ULK0	Salmonella_phage	6.0e-68	97.7
WP_000008736.1\|3703829_3704384_-	hypothetical protein	A0A0M4S631	Salmonella_phage	1.8e-94	99.5
WP_001125677.1\|3704380_3704788_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	1.0e-70	96.3
WP_001040702.1\|3704753_3705122_-	hypothetical protein	A0A0M4RTX5	Salmonella_phage	8.7e-61	100.0
WP_063267823.1\|3705163_3706105_-	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	9.1e-179	99.7
WP_000128057.1\|3706116_3706614_-	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	8.7e-88	99.4
WP_000873159.1\|3706618_3707851_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	1.6e-228	99.5
WP_138010671.1\|3707865_3708603_-\|head	phage head morphogenesis protein	A0A0M4REK0	Salmonella_phage	7.8e-101	88.1
WP_063267824.1\|3708487_3709957_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	2.2e-280	99.2
WP_063267825.1\|3709956_3711579_-	hypothetical protein	A0A0M5M1R6	Salmonella_phage	0.0e+00	98.7
WP_063267826.1\|3711581_3712154_-\|terminase	terminase small subunit	A0A2H4J480	uncultured_Caudovirales_phage	1.0e-60	68.5
WP_063267827.1\|3712174_3712663_-\|lysis	lysis protein	Q8HA85	Salmonella_phage	4.5e-73	91.9
WP_063267828.1\|3712659_3713274_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	5.3e-95	83.8
WP_020844532.1\|3713273_3713555_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	8.2e-35	79.3
WP_001294874.1\|3713541_3713931_-	membrane protein	K7PHB9	Enterobacterial_phage	1.8e-40	71.0
WP_000658039.1\|3714020_3714209_-	hypothetical protein	NA	NA	NA	NA
WP_001244502.1\|3714794_3715229_-	antitermination protein Q	B6SD39	Bacteriophage	4.5e-40	58.9
WP_063267829.1\|3715517_3717704_-	replication protein	B6SCY1	Bacteriophage	1.6e-173	71.5
WP_000170999.1\|3717707_3717920_-	helix-turn-helix transcriptional regulator	A0A0R6PHL1	Moraxella_phage	6.0e-06	42.9
WP_000049987.1\|3718040_3718664_+	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	1.1e-36	45.3
WP_023135388.1\|3719207_3719732_+	hypothetical protein	C9EH97	Sodalis_phage	8.4e-41	48.8
WP_063267830.1\|3719990_3720893_+	hypothetical protein	NA	NA	NA	NA
WP_063267831.1\|3720895_3722197_+	DUF2800 domain-containing protein	B6SCX9	Bacteriophage	1.6e-133	56.4
WP_063267832.1\|3722211_3722760_+	DUF2815 family protein	Q775A5	Bordetella_phage	3.5e-66	64.8
WP_063267833.1\|3722809_3723448_+	hypothetical protein	H6WRY3	Salmonella_phage	2.0e-76	71.0
WP_063267834.1\|3723522_3725589_+	DNA polymerase	Q775A3	Bordetella_phage	2.8e-273	67.8
WP_000077590.1\|3725593_3725806_+	hypothetical protein	NA	NA	NA	NA
WP_000873865.1\|3725802_3726006_+	hypothetical protein	NA	NA	NA	NA
WP_000007248.1\|3726016_3726232_+	ANR family transcriptional regulator	NA	NA	NA	NA
WP_063267835.1\|3726232_3726712_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	6.7e-69	80.1
WP_063267836.1\|3726714_3727023_+	VRR-NUC domain-containing protein	B6SD64	Bacteriophage	2.2e-25	64.7
WP_109208487.1\|3726980_3727736_-	hypothetical protein	NA	NA	NA	NA
WP_000070075.1\|3727772_3729173_+	DEAD/DEAH box helicase	Q3LZN8	Bacteriophage	6.0e-211	73.4
WP_000189281.1\|3729169_3729358_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_001046411.1\|3729364_3729832_-	hypothetical protein	NA	NA	NA	NA
WP_000772661.1\|3729832_3731005_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	5.0e-110	49.0
WP_023242995.1\|3731349_3732600_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.6e-98	47.5
3731158:3731176	attR	NA	NA	NA	NA
WP_001285275.1\|3732611_3733715_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	6.9e-61	39.8
WP_001043667.1\|3733997_3735050_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	2.6e-113	58.8

DBSCAN-SWA_11

4211546 : 4220494

Enterobacteria_phage(83.33%)

integrase,capsid

attL 4208770:4208786|attR 4220664:4220680

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4208770:4208786	attL	NA	NA	NA	NA
WP_000783715.1\|4211546_4213880_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	85.3
WP_000743145.1\|4213894_4214215_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_001216597.1\|4214211_4214439_-	hypothetical protein	NA	NA	NA	NA
WP_000979749.1\|4214435_4214987_-	ash family protein	Q7M2A7	Enterobacteria_phage	1.2e-29	64.5
WP_000556587.1\|4214983_4215250_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_162491381.1\|4215354_4215483_+	hypothetical protein	NA	NA	NA	NA
WP_075207146.1\|4215724_4216534_+\|capsid	capsid protein	NA	NA	NA	NA
WP_000468231.1\|4216537_4216777_+	hypothetical protein	Q7M294	Enterobacteria_phage	2.4e-19	59.3
WP_000214429.1\|4216792_4217359_+	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	7.9e-61	65.9
WP_000775190.1\|4217797_4218739_+	hypothetical protein	NA	NA	NA	NA
WP_000957221.1\|4218747_4219203_+	hypothetical protein	NA	NA	NA	NA
WP_000772664.1\|4219225_4220494_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	5.7e-75	40.7
4220664:4220680	attR	NA	NA	NA	NA

DBSCAN-SWA_12

4471226 : 4515283

Shigella_phage(46.3%)

tRNA,protease,plate,terminase,tail,portal,capsid,head,integrase,holin

attL 4473360:4473375|attR 4476766:4476781

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000918353.1\|4471226_4472642_-	replicative DNA helicase	A0A1B0VG30	Salmonella_phage	7.0e-199	78.4
WP_000235555.1\|4472706_4473690_+	quinone oxidoreductase	NA	NA	NA	NA
4473360:4473375	attL	NA	NA	NA	NA
WP_000891414.1\|4473864_4474107_-	envelope stress response protein PspG	NA	NA	NA	NA
WP_052934728.1\|4474274_4475312_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_000332264.1\|4475400_4476498_+\|integrase	site-specific integrase	S5MDN5	Escherichia_phage	4.3e-212	100.0
WP_001217553.1\|4476559_4476808_+	DinI family protein	K7PLW4	Enterobacteria_phage	1.8e-38	100.0
4476766:4476781	attR	NA	NA	NA	NA
WP_000639149.1\|4476951_4477515_-	recombinase family protein	K7PJT4	Enterobacteria_phage	3.4e-80	79.1
WP_006678262.1\|4477840_4478569_+	hypothetical protein	A0A1B0V7G4	Salmonella_phage	2.8e-143	100.0
WP_001747940.1\|4478570_4478978_+\|tail	tail assembly chaperone	A0A1B0V844	Salmonella_phage	4.9e-73	100.0
WP_006678265.1\|4478981_4479599_-\|tail	tail fiber assembly protein	A0A1B0VCD0	Salmonella_phage	5.7e-113	100.0
WP_023200332.1\|4479568_4481101_-	hypothetical protein	A0A1B0VFW4	Salmonella_phage	1.6e-241	97.9
WP_000383548.1\|4481104_4481689_-	YmfQ family protein	O22003	Shigella_phage	1.1e-113	100.0
WP_022630974.1\|4481679_4482738_-\|plate	baseplate J/gp47 family protein	Q8SBG4	Shigella_phage	5.2e-199	98.6
WP_000424732.1\|4482724_4483150_-	hypothetical protein	U5P0R9	Shigella_phage	2.3e-81	100.0
WP_022630975.1\|4483149_4483698_-\|plate	phage baseplate assembly protein	U5P081	Shigella_phage	1.9e-96	97.8
WP_000999499.1\|4483697_4484777_-\|plate	baseplate protein	Q8SBG7	Shigella_phage	5.3e-207	99.7
WP_000219913.1\|4484773_4486102_-	DNA circularization protein	Q8SBG8	Shigella_phage	8.4e-247	99.3
WP_001439754.1\|4486192_4486705_-	hypothetical protein	NA	NA	NA	NA
WP_023200330.1\|4486786_4488619_-\|tail	phage tail tape measure protein	S5FM63	Shigella_phage	4.7e-304	99.2
WP_000661047.1\|4488760_4489030_-\|tail	phage tail assembly protein	S5FNR3	Shigella_phage	3.5e-43	100.0
WP_000090998.1\|4489029_4489386_-	hypothetical protein	U5P076	Shigella_phage	5.3e-63	100.0
WP_022630977.1\|4489385_4490882_-\|tail	tail sheath protein	M1FN90	Enterobacteria_phage	7.7e-273	99.0
WP_000497751.1\|4490865_4491036_-	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	9.3e-26	100.0
WP_000779279.1\|4491044_4491605_-	hypothetical protein	M1FQV7	Enterobacteria_phage	2.3e-105	99.5
WP_022630978.1\|4491601_4492108_-	hypothetical protein	M1FPE2	Enterobacteria_phage	5.0e-91	99.4
WP_000702388.1\|4492082_4492493_-\|head	phage head closure protein	M1FJ87	Enterobacteria_phage	5.9e-74	97.8
WP_000927719.1\|4492489_4492813_-\|head,tail	phage gp6-like head-tail connector protein	U5P072	Shigella_phage	1.1e-56	99.1
WP_021577001.1\|4492787_4493015_-	hypothetical protein	S5FNU1	Shigella_phage	2.2e-22	94.9
WP_021567480.1\|4493064_4494270_-\|capsid	phage major capsid protein	M1FPN2	Enterobacteria_phage	3.5e-223	99.5
WP_021578635.1\|4494284_4494935_-\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	3.6e-118	99.1
WP_001514795.1\|4494912_4496154_-\|portal	phage portal protein	U5P411	Shigella_phage	5.0e-241	99.5
WP_000605606.1\|4496153_4496336_-	hypothetical protein	S5FXQ9	Shigella_phage	1.7e-25	100.0
WP_000088161.1\|4496347_4498081_-\|terminase	terminase large subunit	U5P0Q5	Shigella_phage	0.0e+00	100.0
WP_000929174.1\|4498094_4498580_-\|terminase	phage terminase small subunit P27 family	Q8SBI1	Shigella_phage	2.1e-86	99.4
WP_023200328.1\|4498705_4499056_-	HNH endonuclease	M1FQV2	Enterobacteria_phage	2.9e-61	94.0
WP_023259402.1\|4499509_4499902_-	DUF2570 domain-containing protein	U5P0U9	Shigella_phage	1.2e-52	86.0
WP_023200327.1\|4499885_4500362_-	glycoside hydrolase family protein	S5FV07	Shigella_phage	1.4e-87	97.5
WP_023200326.1\|4500365_4500701_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	2.1e-53	92.8
WP_001306866.1\|4500838_4501081_-	hypothetical protein	NA	NA	NA	NA
WP_023200325.1\|4501369_4502122_-	antitermination protein	Q8SBE4	Shigella_phage	1.1e-137	99.2
WP_012513026.1\|4502135_4503125_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	8.9e-193	98.5
WP_001061375.1\|4503132_4503930_-	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	1.3e-149	99.2
WP_000767130.1\|4503949_4504339_-	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	1.6e-68	99.2
WP_000210148.1\|4504335_4504662_-	LexA family transcriptional regulator	A0A0N7KZF7	Stx2-converting_phage	1.0e-52	98.1
WP_000066917.1\|4504658_4505312_-	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	1.9e-127	99.5
WP_000054957.1\|4505406_4506399_-	hypothetical protein	U5P0A0	Shigella_phage	1.2e-93	98.2
WP_001250270.1\|4506355_4506568_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	5.4e-15	68.5
WP_000514174.1\|4506743_4507328_-	hypothetical protein	A0A1C9II13	Salmonella_phage	5.5e-57	60.9
WP_001231956.1\|4507355_4507553_-	hypothetical protein	K7PHB1	Enterobacterial_phage	1.1e-14	56.9
WP_000981537.1\|4507648_4508302_+	helix-turn-helix domain-containing protein	K7PLZ5	Enterobacterial_phage	5.7e-71	60.8
WP_072104153.1\|4508573_4509122_+	hypothetical protein	U5P4J6	Shigella_phage	2.3e-97	97.3
WP_000081266.1\|4509187_4510012_+	DUF2303 family protein	U5P439	Shigella_phage	2.3e-149	99.3
WP_000008249.1\|4510140_4510677_+	5'-deoxynucleotidase	U5P0T3	Shigella_phage	4.8e-100	98.9
WP_023200800.1\|4510667_4511546_+	phosphoadenosine phosphosulfate reductase family protein	A0A2R2Z314	Escherichia_phage	1.8e-165	92.5
WP_023200799.1\|4511542_4512016_+	ead/Ea22-like family protein	K7PJQ4	Enterobacteria_phage	1.2e-59	70.1
WP_000212745.1\|4512017_4512305_+	hypothetical protein	A0A1I9LJM1	Stx_converting_phage	3.5e-49	98.9
WP_024146004.1\|4513319_4513892_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	7.1e-110	99.5
WP_001093914.1\|4513928_4514201_+	hypothetical protein	S5MQM5	Escherichia_phage	5.7e-41	96.6
WP_000900143.1\|4514234_4514696_-	hypothetical protein	NA	NA	NA	NA
WP_001535325.1\|4514701_4515283_-	SocA family protein	A0A139ZPG5	Marinitoga_camini_virus	8.8e-07	29.6

DBSCAN-SWA_13

4541113 : 4559268

Burkholderia_phage(45.0%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000615248.1\|4541113_4541461_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
WP_001226440.1\|4542036_4542324_+	membrane protein	Q6QIC8	Burkholderia_phage	5.1e-16	48.1
WP_001270438.1\|4542326_4542932_+	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	6.5e-61	60.4
WP_000777266.1\|4542944_4543259_+	membrane protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
WP_000449433.1\|4543418_4543874_+	hypothetical protein	NA	NA	NA	NA
WP_023242908.1\|4543870_4544068_+	hypothetical protein	Q6QIB1	Burkholderia_phage	6.6e-07	52.9
WP_063177174.1\|4544057_4545485_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	3.1e-194	70.9
WP_000907495.1\|4545484_4546009_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
WP_001003640.1\|4546060_4546378_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001185654.1\|4546337_4546466_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_023242910.1\|4546562_4548917_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	3.1e-66	30.6
WP_023242911.1\|4548916_4549870_+	methyl-accepting chemotaxis protein	A4JWL1	Burkholderia_virus	7.9e-37	51.5
WP_001269716.1\|4549869_4550079_+	membrane protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
WP_023244444.1\|4550066_4551110_+	phage late control D family protein	Q6QIA2	Burkholderia_phage	4.2e-76	45.1
WP_000679393.1\|4551119_4551842_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
WP_000593182.1\|4552169_4552532_+	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
WP_000703633.1\|4552528_4553458_+	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	1.4e-150	84.1
WP_000632053.1\|4553457_4555005_+	hypothetical protein	B9UDL6	Salmonella_phage	3.8e-49	29.9
WP_001093501.1\|4555168_4555528_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
WP_001749150.1\|4555518_4556634_+	bacteriophage protein	Q6QI99	Burkholderia_phage	4.1e-101	52.0
WP_001749149.1\|4556626_4557259_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.9e-23	55.6
WP_000368203.1\|4557261_4558743_+\|tail	tail fiber protein	A0A0M3ULF6	Salmonella_phage	1.3e-51	51.7
WP_023244443.1\|4558752_4559268_+\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	1.3e-33	41.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP014621

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection