CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP014620	Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1676 isolate SAN082 chromosome, complete genome	2 crisprs	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	0	8	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014620_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014620_1

972653-973840

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

19 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NZ_CP014620_1

>merge|NZ_CP014620|1|972653-973840|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGAACTGAAACCAGGCCAGGTGATATTTATCAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGAGTGTGAGCAGGCTATTTATGATGAGCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCATCGTTATACACGTGACGGTTTTAATAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAATGAACAGCCACACATCCGCCAATAAAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTGTCGGTCGCAGTGTGGATATTGCGATCAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGCTGAACGGCGATCTGATTACGTGGAGTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGTACGCCAGCTATAAGGGGTACACGAACAGCTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCATACCCTGTAGTTTCAATTTCCGCAGGTGGGGTGTTCCCCGCGCCAGCGGGGATAAACCGAGCGCGGAATGATTTTTAACGCTGAGATGGTGGTGTTCCCCGCGCCAGCGGGGATAAACCGTACCGCGACACCGTCAACGACAGCAACCACTTGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGTCACTAAAATTTGTAGGGTTATCCACAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGCAATTGCAGTTTGACGCGGTGCTGTCATTGTGTTCCCCGCGCCAGCGGGGATAAACCGTGTCTTAACTCCATTGCTGAGTCGATTGTGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCACACAGAACGCCAGTTATAATCATCGGTGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGTTTGTGGCGTCAGTAATACTATTATCGGTGTGTTCCCCGCGCTAGCGGGGATAAACCGTTTTTAAATCCGGACAGACCCTGTAACGGATCGTGTTCCCCGCGCCAGCGGGGATAAACCGATCCGACTGTATGCCCAGCAGAACGAGGGCGCGTGTTCCCCGCGCTAGCGGGGATAAACCGCACGAGTGGCAAATTGATTTCGACGAAAAACCGTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP014620|1|1|972653-973779|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTGAAACCAGGCCAGGTGATATTTATCAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAGTGTGAGCAGGCTATTTATGATGAGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCATCGTTATACACGTGACGGTTTTAATAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATGAACAGCCACACATCCGCCAATAAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGTCGGTCGCAGTGTGGATATTGCGATCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCTGAACGGCGATCTGATTACGTGGAGTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACGCCAGCTATAAGGGGTACACGAACAGCTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATACCCTGTAGTTTCAATTTCCGCAGGTGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCGCGGAATGATTTTTAACGCTGAGATGGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACCGCGACACCGTCAACGACAGCAACCACTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTCACTAAAATTTGTAGGGTTATCCACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCAATTGCAGTTTGACGCGGTGCTGTCATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCTTAACTCCATTGCTGAGTCGATTGTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACACAGAACGCCAGTTATAATCATCGGTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGTTTGTGGCGTCAGTAATACTATTATCGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TTTTTAAATCCGGACAGACCCTGTAACGGATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCGACTGTATGCCCAGCAGAACGAGGGCGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG

>NZ_CP014620|1|1|972653-973840|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTGAAACCAGGCCAGGTGATATTTATCAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAGTGTGAGCAGGCTATTTATGATGAGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCATCGTTATACACGTGACGGTTTTAATAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATGAACAGCCACACATCCGCCAATAAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGTCGGTCGCAGTGTGGATATTGCGATCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCTGAACGGCGATCTGATTACGTGGAGTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACGCCAGCTATAAGGGGTACACGAACAGCTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATACCCTGTAGTTTCAATTTCCGCAGGTGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCGCGGAATGATTTTTAACGCTGAGATGGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACCGCGACACCGTCAACGACAGCAACCACTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTCACTAAAATTTGTAGGGTTATCCACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCAATTGCAGTTTGACGCGGTGCTGTCATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCTTAACTCCATTGCTGAGTCGATTGTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACACAGAACGCCAGTTATAATCATCGGTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGTTTGTGGCGTCAGTAATACTATTATCGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TTTTTAAATCCGGACAGACCCTGTAACGGATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCGACTGTATGCCCAGCAGAACGAGGGCGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CACGAGTGGCAAATTGATTTCGACGAAAAACC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP014620|1|1|972653-973840|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTGAAACCAGGCCAGGTGATATTTATCAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAGTGTGAGCAGGCTATTTATGATGAGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCATCGTTATACACGTGACGGTTTTAATAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATGAACAGCCACACATCCGCCAATAAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGTCGGTCGCAGTGTGGATATTGCGATCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCTGAACGGCGATCTGATTACGTGGAGTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACGCCAGCTATAAGGGGTACACGAACAGCTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATACCCTGTAGTTTCAATTTCCGCAGGTGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCGCGGAATGATTTTTAACGCTGAGATGGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACCGCGACACCGTCAACGACAGCAACCACTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTCACTAAAATTTGTAGGGTTATCCACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCAATTGCAGTTTGACGCGGTGCTGTCATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCTTAACTCCATTGCTGAGTCGATTGTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACACAGAACGCCAGTTATAATCATCGGTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGTTTGTGGCGTCAGTAATACTATTATCGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TTTTTAAATCCGGACAGACCCTGTAACGGATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCGACTGTATGCCCAGCAGAACGAGGGCGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CACGAGTGGCAAATTGATTTCGACGAAAAACC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014620.1\|WP_023243192.1\|986354_987413_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP014620.1\|WP_000210863.1\|968530_970168_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP014620.1\|WP_000480218.1\|966119_966476_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
NZ_CP014620.1\|WP_023244651.1\|980155_981109_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP014620.1\|WP_000859612.1\|966441_966738_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP014620.1\|WP_023243193.1\|984227_985784_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP014620.1\|WP_001208002.1\|973937_974735_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP014620.1\|WP_000210454.1\|967502_968303_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP014620.1\|WP_001199961.1\|971684_972356_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP014620.1\|WP_023244652.1\|975621_977421_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP014620.1\|WP_000226842.1\|963801_966036_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP014620.1\|WP_023243194.1\|981552_984216_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP014620.1\|WP_001290660.1\|977420_979133_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP014620.1\|WP_000036734.1\|970250_971549_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP014620.1\|WP_000117946.1\|985780_986341_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP014620.1\|WP_000108313.1\|974824_975187_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP014620.1\|WP_023243195.1\|979208_979943_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP014620.1\|WP_023243200.1\|962454_963750_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP014620.1\|WP_000186400.1\|959640_962397_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP014620.1\|WP_000706479.1\|958454_959597_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840

Protein	Function_ID	Function_description	E-value
NZ_CP014620.1\|WP_023243192.1\|986354_987413_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.6231e-131
NZ_CP014620.1\|WP_000210863.1\|968530_970168_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP014620.1\|WP_000480218.1\|966119_966476_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	6.12601e-20
NZ_CP014620.1\|WP_023244651.1\|980155_981109_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP014620.1\|WP_000859612.1\|966441_966738_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	1.09008e-13
NZ_CP014620.1\|WP_023243193.1\|984227_985784_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP014620.1\|WP_001208002.1\|973937_974735_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	5.39566e-102
NZ_CP014620.1\|WP_000210454.1\|967502_968303_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.36327e-159
NZ_CP014620.1\|WP_001199961.1\|971684_972356_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP014620.1\|WP_023244652.1\|975621_977421_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP014620.1\|WP_000226842.1\|963801_966036_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP014620.1\|WP_023243194.1\|981552_984216_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP014620.1\|WP_001290660.1\|977420_979133_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP014620.1\|WP_000036734.1\|970250_971549_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP014620.1\|WP_000117946.1\|985780_986341_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
NZ_CP014620.1\|WP_000108313.1\|974824_975187_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP014620.1\|WP_023243195.1\|979208_979943_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.18614e-138
NZ_CP014620.1\|WP_023243200.1\|962454_963750_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP014620.1\|WP_000186400.1\|959640_962397_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP014620.1\|WP_000706479.1\|958454_959597_+\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0

>NZ_CP014620.1|WP_001199961.1|971684_972356_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP014620.1|WP_000036734.1|970250_971549_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP014620.1|WP_000210863.1|968530_970168_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP014620.1|WP_000210454.1|967502_968303_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP014620.1|WP_000859612.1|966441_966738_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MKTVKLTPKASEDLENIWHYGWQHFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFERHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>NZ_CP014620.1|WP_000480218.1|966119_966476_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>NZ_CP014620.1|WP_000226842.1|963801_966036_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNIQAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>NZ_CP014620.1|WP_023243200.1|962454_963750_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLECFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NZ_CP014620.1|WP_000186400.1|959640_962397_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>NZ_CP014620.1|WP_000706479.1|958454_959597_+|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>NZ_CP014620.1|WP_001208002.1|973937_974735_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP014620.1|WP_000108313.1|974824_975187_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP014620.1|WP_023244652.1|975621_977421_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMSGITLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVMVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP014620.1|WP_001290660.1|977420_979133_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENIAEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP014620.1|WP_023243195.1|979208_979943_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDEITDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP014620.1|WP_023244651.1|980155_981109_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDLLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP014620.1|WP_023243194.1|981552_984216_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMCNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYTSGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP014620.1|WP_023243193.1|984227_985784_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVNLADENVMDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGGCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRGALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIQDLENGHKPDERLNKWQRELWLFTRRYFDDRVFTNPYESSDLKRIMTARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP014620.1|WP_000117946.1|985780_986341_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NZ_CP014620.1|WP_023243192.1|986354_987413_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICINKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNAAVKRITALHENMNEVYAQETAFKNFNVMNQQGSMKDVLDFICA

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Crispr_ID: NZ_CP014620_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014620_2

990154-990304

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CRISPRCasFinder

2 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP014620_2

>merge|NZ_CP014620|2|990154-990304|CRISPRCasFinder
GTGTTCCCCGCGCTAGCGGGGATAAACCGGAGCGGCTAAACGATGAATTAACCAGGGAGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGCACAACGCCTGGATATCCGCCCATCGGCCGTGTTCCCCGCGTCAGCGGGGATAAACAC

>NZ_CP014620|2|2|990154-990304|CRISPRCasFinder
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GAGCGGCTAAACGATGAATTAACCAGGGAGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCACAACGCCTGGATATCCGCCCATCGGCC
GTGTTCCCCGCGTCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014620.1\|WP_023243192.1\|986354_987413_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP014620.1\|WP_023243193.1\|984227_985784_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP014620.1\|WP_001518648.1\|989763_990057_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP014620.1\|WP_023244651.1\|980155_981109_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP014620.1\|WP_000085115.1\|987423_988170_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP014620.1\|WP_001221538.1\|997675_998437_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP014620.1\|WP_000134246.1\|996645_997695_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP014620.1\|WP_023243194.1\|981552_984216_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP014620.1\|WP_001092255.1\|992533_993973_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP014620.1\|WP_000490481.1\|990318_991365_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP014620.1\|WP_000372384.1\|991615_992524_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP014620.1\|WP_000281483.1\|988151_988802_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP014620.1\|WP_001173664.1\|993959_994565_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP014620.1\|WP_000517480.1\|995129_995441_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP014620.1\|WP_023244650.1\|988798_989764_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP014620.1\|WP_000117946.1\|985780_986341_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP014620.1\|WP_023244649.1\|995459_996170_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP014620.1\|WP_001219245.1\|996169_996649_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP014620.1\|WP_023243195.1\|979208_979943_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP014620.1\|WP_001118109.1\|994582_994939_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891

Protein	Function_ID	Function_description	E-value
NZ_CP014620.1\|WP_023243192.1\|986354_987413_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.6231e-131
NZ_CP014620.1\|WP_023243193.1\|984227_985784_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP014620.1\|WP_001518648.1\|989763_990057_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
NZ_CP014620.1\|WP_023244651.1\|980155_981109_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP014620.1\|WP_000085115.1\|987423_988170_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.23137e-48
NZ_CP014620.1\|WP_001221538.1\|997675_998437_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_CP014620.1\|WP_000134246.1\|996645_997695_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP014620.1\|WP_023243194.1\|981552_984216_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP014620.1\|WP_001092255.1\|992533_993973_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP014620.1\|WP_000490481.1\|990318_991365_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP014620.1\|WP_000372384.1\|991615_992524_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP014620.1\|WP_000281483.1\|988151_988802_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	7.7595e-75
NZ_CP014620.1\|WP_001173664.1\|993959_994565_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.11365e-145
NZ_CP014620.1\|WP_000517480.1\|995129_995441_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP014620.1\|WP_023244650.1\|988798_989764_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.61403e-153
NZ_CP014620.1\|WP_000117946.1\|985780_986341_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
NZ_CP014620.1\|WP_023244649.1\|995459_996170_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.72737e-119
NZ_CP014620.1\|WP_001219245.1\|996169_996649_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
NZ_CP014620.1\|WP_023243195.1\|979208_979943_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.18614e-138
NZ_CP014620.1\|WP_001118109.1\|994582_994939_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49

>NZ_CP014620.1|WP_001518648.1|989763_990057_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NZ_CP014620.1|WP_023244650.1|988798_989764_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NZ_CP014620.1|WP_000281483.1|988151_988802_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASTIFDVQTRPFAPMLSAGQTLRFNLRANPTICKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALEWLARQGEQNGFTLREASVDAYRQQQIRREKSRQMIQFSSVDYTGVLVINEPALFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>NZ_CP014620.1|WP_000085115.1|987423_988170_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNTFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQAALQHPVFPLYLGRKSHPLALPLAPQLLEGNAADVLREAYRWYQDQFNALKLTLPGLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NZ_CP014620.1|WP_023243192.1|986354_987413_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICINKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNAAVKRITALHENMNEVYAQETAFKNFNVMNQQGSMKDVLDFICA
>NZ_CP014620.1|WP_000117946.1|985780_986341_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NZ_CP014620.1|WP_023243193.1|984227_985784_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVNLADENVMDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGGCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRGALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIQDLENGHKPDERLNKWQRELWLFTRRYFDDRVFTNPYESSDLKRIMTARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP014620.1|WP_023243194.1|981552_984216_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMCNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYTSGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP014620.1|WP_023244651.1|980155_981109_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDLLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP014620.1|WP_023243195.1|979208_979943_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDEITDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP014620.1|WP_000490481.1|990318_991365_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP014620.1|WP_000372384.1|991615_992524_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP014620.1|WP_001092255.1|992533_993973_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPMEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP014620.1|WP_001173664.1|993959_994565_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARSGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP014620.1|WP_001118109.1|994582_994939_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP014620.1|WP_000517480.1|995129_995441_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP014620.1|WP_023244649.1|995459_996170_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLYDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIQQEKA
>NZ_CP014620.1|WP_001219245.1|996169_996649_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP014620.1|WP_000134246.1|996645_997695_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP014620.1|WP_001221538.1|997675_998437_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	CP053320	Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence	27359-27390	0	1.0
NZ_CP014620_2	2.2\|990244\|32\|NZ_CP014620\|CRISPRCasFinder	990244-990275	32	NZ_CP044185	Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403	35345-35376	0	1.0
NZ_CP014620_2	2.2\|990244\|32\|NZ_CP014620\|CRISPRCasFinder	990244-990275	32	NZ_CP029990	Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591 plasmid pSA20121591.1, complete sequence	95164-95195	1	0.969
NZ_CP014620_2	2.2\|990244\|32\|NZ_CP014620\|CRISPRCasFinder	990244-990275	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	9403-9434	1	0.969
NZ_CP014620_2	2.2\|990244\|32\|NZ_CP014620\|CRISPRCasFinder	990244-990275	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	39737-39768	1	0.969
NZ_CP014620_2	2.2\|990244\|32\|NZ_CP014620\|CRISPRCasFinder	990244-990275	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	113376-113407	1	0.969
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	CP054337	Escherichia coli strain SCU-120 plasmid pSCU-120-2, complete sequence	47898-47929	3	0.906
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	CP042641	Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence	30480-30511	3	0.906
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	NZ_CP034821	Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence	8985-9016	3	0.906
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	NZ_CP030188	Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence	71040-71071	3	0.906
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	NZ_CP023732	Escherichia coli strain FORC 064 plasmid pFORC64.1, complete sequence	48005-48036	3	0.906
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	NZ_CP017632	Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence	116267-116298	3	0.906
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	NZ_CP039862	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence	27391-27422	3	0.906
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	NZ_CP033632	Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence	71244-71275	3	0.906
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	NZ_CP041922	Escherichia coli strain Ec40743 plasmid unnamed3, complete sequence	64019-64050	3	0.906
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	CP027320	Escherichia coli strain 2014C-3084 plasmid unnamed1	33729-33760	3	0.906
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	MN510445	Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence	64871-64902	3	0.906
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	MN510447	Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence	54320-54351	3	0.906
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	NC_050152	Enterobacteria phage P7, complete genome	86888-86919	3	0.906
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	NC_042128	Escherichia phage RCS47, complete genome	91937-91968	3	0.906
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	NC_031129	Salmonella phage SJ46, complete genome	84791-84822	3	0.906
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	MK448230	Klebsiella phage ST16-OXA48phi5.2, complete genome	5645-5676	3	0.906
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	NZ_CP042632	Escherichia coli strain NCYU-25-82 plasmid pNCYU-25-82-5, complete sequence	40633-40664	4	0.875
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	NZ_CP042620	Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-5, complete sequence	54231-54262	4	0.875
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	NZ_AP018804	Escherichia coli strain E2863 plasmid pE2863-2, complete sequence	19433-19464	4	0.875
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	NZ_CP021720	Escherichia coli strain AR_0128 plasmid tig00000793, complete sequence	110385-110416	4	0.875
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	NZ_CP021537	Escherichia coli strain AR_0119 plasmid unitig_3, complete sequence	23452-23483	4	0.875
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	NZ_CP027309	Escherichia coli strain 2015C-3108 plasmid unnamed2, complete sequence	32859-32890	4	0.875
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	CP050999	Escherichia coli O39:NM str. F8704-2 plasmid pF8704-2_2	40868-40899	4	0.875
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	NZ_CP047663	Escherichia coli strain LD93-1 plasmid pLD93-1-90kb, complete sequence	62453-62484	4	0.875
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	NZ_CP029365	Escherichia coli strain WCHEC035148 plasmid p1_035148, complete sequence	65901-65932	4	0.875
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	NZ_CP020051	Escherichia coli strain AR_0118 plasmid unitig_3, complete sequence	61123-61154	4	0.875
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	KY271396	Klebsiella phage 2 LV-2017, complete genome	41444-41475	4	0.875
NZ_CP014620_1	1.5\|972926\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	972926-972957	32	NZ_CP034838	Rahnella aquatilis strain KM12 plasmid pKM12v1, complete sequence	103026-103057	6	0.812
NZ_CP014620_1	1.5\|972926\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	972926-972957	32	NZ_CP034839	Rahnella aquatilis strain KM25 plasmid pKM12v2, complete sequence	103026-103057	6	0.812
NZ_CP014620_1	1.11\|973292\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973292-973323	32	NZ_CP018865	Arthrobacter crystallopoietes strain DSM 20117 plasmid pLDW-10, complete sequence	205587-205618	6	0.812
NZ_CP014620_1	1.14\|973475\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973475-973506	32	NC_015727	Cupriavidus necator N-1 plasmid pBB1, complete sequence	1236642-1236673	6	0.812
NZ_CP014620_1	1.14\|973475\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973475-973506	32	NC_015727	Cupriavidus necator N-1 plasmid pBB1, complete sequence	1370300-1370331	6	0.812
NZ_CP014620_1	1.5\|972926\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	972926-972957	32	NZ_CP053542	Vibrio europaeus strain NPI-1 plasmid pVEu, complete sequence	229056-229087	7	0.781
NZ_CP014620_1	1.5\|972926\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	972926-972957	32	NZ_CP009356	Vibrio tubiashii ATCC 19109 plasmid p251, complete sequence	46871-46902	7	0.781
NZ_CP014620_1	1.10\|973231\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973231-973262	32	MK575466	Vibrio phage Rostov 7, complete genome	14119-14150	7	0.781
NZ_CP014620_2	2.2\|990244\|32\|NZ_CP014620\|CRISPRCasFinder	990244-990275	32	NZ_CP040720	Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence	270963-270994	7	0.781
NZ_CP014620_1	1.11\|973292\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973292-973323	32	NZ_CP015738	Shinella sp. HZN7 plasmid pShin-02, complete sequence	176307-176338	8	0.75
NZ_CP014620_1	1.11\|973292\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973292-973323	32	NZ_CP010410	Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence	332281-332312	8	0.75
NZ_CP014620_1	1.17\|973658\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973658-973689	32	NZ_CP025224	Enterococcus sp. CR-Ec1 plasmid pCREc1, complete sequence	62016-62047	8	0.75
NZ_CP014620_1	1.19\|973780\|32\|NZ_CP014620\|CRISPRCasFinder,CRT	973780-973811	32	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1655546-1655577	8	0.75
NZ_CP014620_1	1.19\|973780\|32\|NZ_CP014620\|CRISPRCasFinder,CRT	973780-973811	32	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	1565948-1565979	8	0.75
NZ_CP014620_1	1.19\|973780\|32\|NZ_CP014620\|CRISPRCasFinder,CRT	973780-973811	32	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	1565949-1565980	8	0.75
NZ_CP014620_1	1.5\|972926\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	972926-972957	32	NZ_CP013634	Rhizobium sp. N324 plasmid pRspN324d, complete sequence	374514-374545	9	0.719
NZ_CP014620_1	1.11\|973292\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973292-973323	32	AP018399	Xanthomonas phage XacN1 DNA, complete genome	89668-89699	9	0.719
NZ_CP014620_1	1.11\|973292\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973292-973323	32	NC_030917	Gordonia phage OneUp, complete genome	3597-3628	9	0.719
NZ_CP014620_1	1.19\|973780\|32\|NZ_CP014620\|CRISPRCasFinder,CRT	973780-973811	32	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	1578348-1578379	9	0.719
NZ_CP014620_1	1.19\|973780\|32\|NZ_CP014620\|CRISPRCasFinder,CRT	973780-973811	32	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	1496565-1496596	9	0.719
NZ_CP014620_1	1.19\|973780\|32\|NZ_CP014620\|CRISPRCasFinder,CRT	973780-973811	32	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1568471-1568502	9	0.719
NZ_CP014620_1	1.19\|973780\|32\|NZ_CP014620\|CRISPRCasFinder,CRT	973780-973811	32	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	1495587-1495618	9	0.719
NZ_CP014620_1	1.19\|973780\|32\|NZ_CP014620\|CRISPRCasFinder,CRT	973780-973811	32	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	1496557-1496588	9	0.719
NZ_CP014620_1	1.19\|973780\|32\|NZ_CP014620\|CRISPRCasFinder,CRT	973780-973811	32	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	1495910-1495941	9	0.719
NZ_CP014620_1	1.19\|973780\|32\|NZ_CP014620\|CRISPRCasFinder,CRT	973780-973811	32	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	1496547-1496578	9	0.719
NZ_CP014620_1	1.19\|973780\|32\|NZ_CP014620\|CRISPRCasFinder,CRT	973780-973811	32	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	1578515-1578546	9	0.719
NZ_CP014620_1	1.19\|973780\|32\|NZ_CP014620\|CRISPRCasFinder,CRT	973780-973811	32	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	1578498-1578529	9	0.719
NZ_CP014620_1	1.19\|973780\|32\|NZ_CP014620\|CRISPRCasFinder,CRT	973780-973811	32	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	1578478-1578509	9	0.719
NZ_CP014620_1	1.8\|973109\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973109-973140	32	NZ_CP020413	Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 plasmid unnamed1, complete sequence	252721-252752	10	0.688
NZ_CP014620_1	1.11\|973292\|32\|NZ_CP014620\|PILER-CR,CRISPRCasFinder,CRT	973292-973323	32	NZ_CP018784	Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence	161882-161913	10	0.688

1. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to CP053320 (Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggaatgatttttaacgctgagatggtg	Protospacer
********************************

2. spacer 2.2|990244|32|NZ_CP014620|CRISPRCasFinder matches to NZ_CP044185 (Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403) position: , mismatch: 0, identity: 1.0

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatatccgcccatcggcc	Protospacer
********************************

3. spacer 2.2|990244|32|NZ_CP014620|CRISPRCasFinder matches to NZ_CP029990 (Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591 plasmid pSA20121591.1, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

4. spacer 2.2|990244|32|NZ_CP014620|CRISPRCasFinder matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

5. spacer 2.2|990244|32|NZ_CP014620|CRISPRCasFinder matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

6. spacer 2.2|990244|32|NZ_CP014620|CRISPRCasFinder matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

7. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to CP054337 (Escherichia coli strain SCU-120 plasmid pSCU-120-2, complete sequence) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

8. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to CP042641 (Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

9. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034821 (Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

10. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030188 (Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

11. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023732 (Escherichia coli strain FORC 064 plasmid pFORC64.1, complete sequence) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

12. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017632 (Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

13. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039862 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

14. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033632 (Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

15. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041922 (Escherichia coli strain Ec40743 plasmid unnamed3, complete sequence) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

16. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to CP027320 (Escherichia coli strain 2014C-3084 plasmid unnamed1) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

17. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to MN510445 (Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

18. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to MN510447 (Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

19. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NC_050152 (Enterobacteria phage P7, complete genome) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

20. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NC_042128 (Escherichia phage RCS47, complete genome) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

21. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NC_031129 (Salmonella phage SJ46, complete genome) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

22. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to MK448230 (Klebsiella phage ST16-OXA48phi5.2, complete genome) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
aacgcggaatgatttttaacgccgatatggtg	Protospacer
*.********************.** ******

23. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042632 (Escherichia coli strain NCYU-25-82 plasmid pNCYU-25-82-5, complete sequence) position: , mismatch: 4, identity: 0.875

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
aacgcgggatgatttttaacgatgagatggtc	Protospacer
*.*****.************* *********

24. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042620 (Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-5, complete sequence) position: , mismatch: 4, identity: 0.875

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
aacgcgggatgatttttaacgatgagatggtc	Protospacer
*.*****.************* *********

25. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018804 (Escherichia coli strain E2863 plasmid pE2863-2, complete sequence) position: , mismatch: 4, identity: 0.875

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
aacgcgggatgatttttaacgatgagatggtc	Protospacer
*.*****.************* *********

26. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021720 (Escherichia coli strain AR_0128 plasmid tig00000793, complete sequence) position: , mismatch: 4, identity: 0.875

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
aacgcgggatgatttttaacgatgagatggtc	Protospacer
*.*****.************* *********

27. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021537 (Escherichia coli strain AR_0119 plasmid unitig_3, complete sequence) position: , mismatch: 4, identity: 0.875

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
aacgcgggatgatttttaacgatgagatggtc	Protospacer
*.*****.************* *********

28. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027309 (Escherichia coli strain 2015C-3108 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.875

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
aacgcgggatgatttttaacgatgagatggtc	Protospacer
*.*****.************* *********

29. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to CP050999 (Escherichia coli O39:NM str. F8704-2 plasmid pF8704-2_2) position: , mismatch: 4, identity: 0.875

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
aacgcgggatgatttttaacgatgagatggtc	Protospacer
*.*****.************* *********

30. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047663 (Escherichia coli strain LD93-1 plasmid pLD93-1-90kb, complete sequence) position: , mismatch: 4, identity: 0.875

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
aacgcgggatgatttttaacgatgagatggtc	Protospacer
*.*****.************* *********

31. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029365 (Escherichia coli strain WCHEC035148 plasmid p1_035148, complete sequence) position: , mismatch: 4, identity: 0.875

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
aacgcgggatgatttttaacgatgagatggtc	Protospacer
*.*****.************* *********

32. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020051 (Escherichia coli strain AR_0118 plasmid unitig_3, complete sequence) position: , mismatch: 4, identity: 0.875

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
aacgcgggatgatttttaacgatgagatggtc	Protospacer
*.*****.************* *********

33. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to KY271396 (Klebsiella phage 2 LV-2017, complete genome) position: , mismatch: 4, identity: 0.875

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
aacacggaatgatttttaacggggagatggtg	Protospacer
*.*.*****************  *********

34. spacer 1.5|972926|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034838 (Rahnella aquatilis strain KM12 plasmid pKM12v1, complete sequence) position: , mismatch: 6, identity: 0.812

gctgtcggtcgcagtgtggatattgcgatcaa	CRISPR spacer
gcaacgggtcgcagcgtggatatcgcgatcaa	Protospacer
** .. ********.********.********

35. spacer 1.5|972926|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034839 (Rahnella aquatilis strain KM25 plasmid pKM12v2, complete sequence) position: , mismatch: 6, identity: 0.812

gctgtcggtcgcagtgtggatattgcgatcaa	CRISPR spacer
gcaacgggtcgcagcgtggatatcgcgatcaa	Protospacer
** .. ********.********.********

36. spacer 1.11|973292|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018865 (Arthrobacter crystallopoietes strain DSM 20117 plasmid pLDW-10, complete sequence) position: , mismatch: 6, identity: 0.812

taccgcgacaccgtcaacgacagcaaccactt	CRISPR spacer
aaccgcgtcaccggcaacgacagcaaccggct	Protospacer
 ****** ***** **************. .*

37. spacer 1.14|973475|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 6, identity: 0.812

tgtcttaactccattgctgagtcga-ttgtgaa	CRISPR spacer
tgctttaactccatttttgagtcgatttgtgc-	Protospacer
**..*********** .******** *****

38. spacer 1.14|973475|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 6, identity: 0.812

tgtcttaactccattgctgagtcga-ttgtgaa	CRISPR spacer
tgctttaactccatttttgagtcgatttgtgc-	Protospacer
**..*********** .******** *****

39. spacer 1.5|972926|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053542 (Vibrio europaeus strain NPI-1 plasmid pVEu, complete sequence) position: , mismatch: 7, identity: 0.781

gctgtcggtcgcagtgtggatattgcgatcaa	CRISPR spacer
ggtgtcggtagcagtgtggattttggtaccat	Protospacer
* ******* *********** ***  *.**

40. spacer 1.5|972926|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009356 (Vibrio tubiashii ATCC 19109 plasmid p251, complete sequence) position: , mismatch: 7, identity: 0.781

gctgtcggtcgcagtgtggatattgcgatcaa	CRISPR spacer
ggtgtcggtagcagtgtggattttggtaccat	Protospacer
* ******* *********** ***  *.**

41. spacer 1.10|973231|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to MK575466 (Vibrio phage Rostov 7, complete genome) position: , mismatch: 7, identity: 0.781

-agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
tagttc-caatgatttttaacactgacatggtt	Protospacer
 **. *  *************.**** *****

42. spacer 2.2|990244|32|NZ_CP014620|CRISPRCasFinder matches to NZ_CP040720 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgagaaacgcctggatctccgcccaccgccg	Protospacer
*** . *********** ********.** *

43. spacer 1.11|973292|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015738 (Shinella sp. HZN7 plasmid pShin-02, complete sequence) position: , mismatch: 8, identity: 0.75

taccgcgacaccgtcaacgacagcaaccactt	CRISPR spacer
cgccgcgacaccgtcaacgacatcatcctgcc	Protospacer
..******************** ** **  ..

44. spacer 1.11|973292|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010410 (Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

taccgcgacaccgtcaacgacagcaaccactt--	CRISPR spacer
gacagcgacaccgtcatcgacagca--cggtgaa	Protospacer
 ** ************ ********  *. *

45. spacer 1.17|973658|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025224 (Enterococcus sp. CR-Ec1 plasmid pCREc1, complete sequence) position: , mismatch: 8, identity: 0.75

tttttaaatccggacagaccctgtaacggatc	CRISPR spacer
tttttaaatccggaaagacactgtcaaaaaag	Protospacer
************** **** **** * ..*

46. spacer 1.19|973780|32|NZ_CP014620|CRISPRCasFinder,CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 8, identity: 0.75

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
ccagagcggcaaatggatttcgacgacctacg	Protospacer
*  ***.******* ***********   **

47. spacer 1.19|973780|32|NZ_CP014620|CRISPRCasFinder,CRT matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
ccagagcggcaaatggatttcgacgacctacg	Protospacer
*  ***.******* ***********   **

48. spacer 1.19|973780|32|NZ_CP014620|CRISPRCasFinder,CRT matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
ccagagcggcaaatggatttcgacgacctacg	Protospacer
*  ***.******* ***********   **

49. spacer 1.5|972926|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013634 (Rhizobium sp. N324 plasmid pRspN324d, complete sequence) position: , mismatch: 9, identity: 0.719

gctgtcggtcgcagtgtggatattgcgatcaa	CRISPR spacer
gctgtcggtcgcggtgtggacatggtcactct	Protospacer
************.*******.** *. *..

50. spacer 1.11|973292|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to AP018399 (Xanthomonas phage XacN1 DNA, complete genome) position: , mismatch: 9, identity: 0.719

taccgcgacaccgtcaacgacagcaaccactt	CRISPR spacer
acttgcgacaccgacaccgacagcaacccgta	Protospacer
  ..********* ** ***********  *

51. spacer 1.11|973292|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NC_030917 (Gordonia phage OneUp, complete genome) position: , mismatch: 9, identity: 0.719

taccgcgacaccgtcaacgacagcaaccactt	CRISPR spacer
gtgagctacaccgtcaacgacatcaacgagta	Protospacer
    ** *************** **** * *

52. spacer 1.19|973780|32|NZ_CP014620|CRISPRCasFinder,CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

53. spacer 1.19|973780|32|NZ_CP014620|CRISPRCasFinder,CRT matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

54. spacer 1.19|973780|32|NZ_CP014620|CRISPRCasFinder,CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

55. spacer 1.19|973780|32|NZ_CP014620|CRISPRCasFinder,CRT matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

56. spacer 1.19|973780|32|NZ_CP014620|CRISPRCasFinder,CRT matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

57. spacer 1.19|973780|32|NZ_CP014620|CRISPRCasFinder,CRT matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

58. spacer 1.19|973780|32|NZ_CP014620|CRISPRCasFinder,CRT matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

59. spacer 1.19|973780|32|NZ_CP014620|CRISPRCasFinder,CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

60. spacer 1.19|973780|32|NZ_CP014620|CRISPRCasFinder,CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

61. spacer 1.19|973780|32|NZ_CP014620|CRISPRCasFinder,CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

62. spacer 1.8|973109|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020413 (Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gcccgagaaaagttgcttctctttgctgctgc	CRISPR spacer
gcccgagaaaattttcttctctttagaatcct	Protospacer
*********** ** *********.  ... .

63. spacer 1.11|973292|32|NZ_CP014620|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018784 (Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence) position: , mismatch: 10, identity: 0.688

taccgcgacaccgtcaacgacagcaaccactt	CRISPR spacer
agccgcgccaccggcaacgacagcacgaagac	Protospacer
 .***** ***** ***********   *  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1156229 : 1162033

Enterobacteria_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021000674.1\|1156229_1158563_-	hypothetical protein	Q7M2A8	Enterobacteria_phage	0.0e+00	84.5
WP_000743150.1\|1158577_1158898_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_001604623.1\|1158894_1159122_-	hypothetical protein	NA	NA	NA	NA
WP_023243884.1\|1159118_1159670_-	ash family protein	Q7M2A7	Enterobacteria_phage	8.6e-36	71.3
WP_001604627.1\|1159666_1159933_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	1.7e-29	70.5
WP_039500098.1\|1160470_1161208_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	3.2e-78	63.6
WP_000984211.1\|1161204_1161450_+	transcriptional regulator	Q7M294	Enterobacteria_phage	6.3e-31	76.5
WP_000210078.1\|1161466_1162033_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	7.7e-56	62.7

DBSCAN-SWA_2

1684908 : 1694079

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569166.1\|1684908_1685856_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2
WP_000824854.1\|1685839_1686571_+	ABC transporter permease	NA	NA	NA	NA
WP_001261696.1\|1686551_1686659_-	protein YohO	NA	NA	NA	NA
WP_001240418.1\|1686718_1687450_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_023243038.1\|1687672_1689358_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.9e-278	91.1
WP_000598637.1\|1689354_1690074_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950413.1\|1690120_1690588_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_001197951.1\|1690644_1691175_-	YehR family lipoprotein	NA	NA	NA	NA
WP_000703137.1\|1691346_1691805_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_000195332.1\|1692045_1694079_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_3

1764303 : 1770600

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023244537.1\|1764303_1765707_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	26.5
WP_000981469.1\|1765884_1766778_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_000697846.1\|1767154_1768240_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
WP_001023662.1\|1768239_1769139_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.4e-30	36.3
WP_023243995.1\|1769186_1770065_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.3e-107	64.1
WP_001100808.1\|1770069_1770600_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.8e-52	57.1

DBSCAN-SWA_4

1876754 : 1888139

Stenotrophomonas_phage(25.0%)

integrase

attL 1862642:1862657|attR 1878179:1878194

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1862642:1862657	attL	NA	NA	NA	NA
WP_023244267.1\|1876754_1878017_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.5e-75	41.3
WP_023243861.1\|1878662_1878953_-	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.8e-08	49.1
1878179:1878194	attR	NA	NA	NA	NA
WP_000598920.1\|1879324_1880122_-	DgsA anti-repressor MtfA	NA	NA	NA	NA
WP_000500830.1\|1880602_1880764_+	hypothetical protein	NA	NA	NA	NA
WP_023243860.1\|1880890_1881310_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_000457663.1\|1881312_1882581_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	9.3e-227	91.9
WP_000208509.1\|1883035_1883248_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_024131163.1\|1883258_1883447_+	hypothetical protein	NA	NA	NA	NA
WP_001080661.1\|1883706_1884900_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	3.0e-110	56.2
WP_000107435.1\|1885548_1885860_+	hypothetical protein	NA	NA	NA	NA
WP_023243859.1\|1885939_1886635_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
WP_023243858.1\|1886708_1888139_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_5

1992459 : 2000222

Enterobacteria_phage(28.57%)

integrase

attL 1994669:1994691|attR 2006792:2006814

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000856224.1\|1992459_1992690_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
WP_000168393.1\|1992827_1993202_+	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_072101102.1\|1993202_1994078_+	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_000722368.1\|1994094_1994448_+	YebY family protein	NA	NA	NA	NA
1994669:1994691	attL	NA	NA	NA	NA
WP_020438172.1\|1994819_1995899_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	6.3e-99	52.0
WP_023244250.1\|1995895_1997002_-	exodeoxyribonuclease 8	Q9QF34	Lambdoid_phage	1.4e-53	65.0
WP_001013467.1\|1997032_1997263_+	hypothetical protein	Q8HA86	Salmonella_phage	6.1e-28	93.7
WP_001050883.1\|1997316_1997850_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	5.4e-11	43.0
WP_000789530.1\|1998106_1998274_-	lytic enzyme	NA	NA	NA	NA
WP_001521334.1\|1998338_1998527_-	hypothetical protein	NA	NA	NA	NA
WP_000348541.1\|1998581_1999073_+	DUF1441 family protein	Q9EYD0	Enterobacteria_phage	7.1e-42	56.2
WP_023244117.1\|1999625_2000222_+	hypothetical protein	Q1MVL8	Enterobacteria_phage	7.8e-35	43.1
2006792:2006814	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2915459 : 2924541

Ralstonia_phage(16.67%)

integrase,protease

attL 2913852:2913864|attR 2933038:2933050

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2913852:2913864	attL	NA	NA	NA	NA
WP_024155556.1\|2915459_2916701_-\|integrase	site-specific integrase	A0A077KET4	Ralstonia_phage	2.5e-75	40.7
WP_023243338.1\|2917228_2917606_+\|integrase	phage integrase	NA	NA	NA	NA
WP_001117984.1\|2917767_2917965_+	hypothetical protein	NA	NA	NA	NA
WP_000934064.1\|2918177_2920454_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_000520789.1\|2920484_2920805_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000447499.1\|2921128_2921350_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000125893.1\|2921479_2923426_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	9.1e-40	42.3
WP_023202044.1\|2923422_2924541_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9
2933038:2933050	attR	NA	NA	NA	NA

DBSCAN-SWA_7

4007613 : 4016561

Enterobacteria_phage(83.33%)

capsid,integrase

attL 4004837:4004853|attR 4016731:4016747

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4004837:4004853	attL	NA	NA	NA	NA
WP_000783715.1\|4007613_4009947_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	85.3
WP_000743145.1\|4009961_4010282_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_001216597.1\|4010278_4010506_-	hypothetical protein	NA	NA	NA	NA
WP_000979749.1\|4010502_4011054_-	ash family protein	Q7M2A7	Enterobacteria_phage	1.2e-29	64.5
WP_000556587.1\|4011050_4011317_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_162491381.1\|4011421_4011550_+	hypothetical protein	NA	NA	NA	NA
WP_075207146.1\|4011791_4012601_+\|capsid	capsid protein	NA	NA	NA	NA
WP_000468231.1\|4012604_4012844_+	hypothetical protein	Q7M294	Enterobacteria_phage	2.4e-19	59.3
WP_000214429.1\|4012859_4013426_+	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	7.9e-61	65.9
WP_000775190.1\|4013864_4014806_+	hypothetical protein	NA	NA	NA	NA
WP_000957221.1\|4014814_4015270_+	hypothetical protein	NA	NA	NA	NA
WP_000772664.1\|4015292_4016561_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	5.7e-75	40.7
4016731:4016747	attR	NA	NA	NA	NA

DBSCAN-SWA_8

4266227 : 4309790

Shigella_phage(45.28%)

integrase,protease,plate,head,tail,portal,holin,terminase,capsid,tRNA

attL 4268361:4268376|attR 4271767:4271782

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000918353.1\|4266227_4267643_-	replicative DNA helicase	A0A1B0VG30	Salmonella_phage	7.0e-199	78.4
WP_000235555.1\|4267707_4268691_+	quinone oxidoreductase	NA	NA	NA	NA
4268361:4268376	attL	NA	NA	NA	NA
WP_000891414.1\|4268865_4269108_-	envelope stress response protein PspG	NA	NA	NA	NA
WP_052934728.1\|4269275_4270313_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_000332264.1\|4270401_4271499_+\|integrase	site-specific integrase	S5MDN5	Escherichia_phage	4.3e-212	100.0
WP_001217553.1\|4271560_4271809_+	DinI family protein	K7PLW4	Enterobacteria_phage	1.8e-38	100.0
4271767:4271782	attR	NA	NA	NA	NA
WP_000639149.1\|4271952_4272516_-	recombinase family protein	K7PJT4	Enterobacteria_phage	3.4e-80	79.1
WP_024144069.1\|4272739_4273228_+	hypothetical protein	A0A1S6KZZ0	Salmonella_phage	9.8e-68	81.4
WP_010835343.1\|4273197_4273815_+\|tail	tail fiber assembly protein	A0A1S6KZY8	Salmonella_phage	5.3e-95	83.6
WP_022631136.1\|4273819_4274353_-\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	5.7e-77	80.3
WP_063269512.1\|4274355_4275381_-	hypothetical protein	A0A192Y7M1	Salmonella_phage	6.8e-87	40.7
WP_000383548.1\|4275384_4275969_-	YmfQ family protein	O22003	Shigella_phage	1.1e-113	100.0
WP_063269513.1\|4275959_4277018_-\|plate	baseplate J/gp47 family protein	Q8SBG4	Shigella_phage	3.4e-198	98.3
WP_000424732.1\|4277004_4277430_-	hypothetical protein	U5P0R9	Shigella_phage	2.3e-81	100.0
WP_022630975.1\|4277429_4277978_-\|plate	phage baseplate assembly protein	U5P081	Shigella_phage	1.9e-96	97.8
WP_000999499.1\|4277977_4279057_-\|plate	baseplate protein	Q8SBG7	Shigella_phage	5.3e-207	99.7
WP_000219913.1\|4279053_4280382_-	DNA circularization protein	Q8SBG8	Shigella_phage	8.4e-247	99.3
WP_001439754.1\|4280472_4280985_-	hypothetical protein	NA	NA	NA	NA
WP_022630976.1\|4281066_4282899_-\|tail	phage tail tape measure protein	S5FM63	Shigella_phage	8.8e-303	98.9
WP_000661047.1\|4283040_4283310_-\|tail	phage tail assembly protein	S5FNR3	Shigella_phage	3.5e-43	100.0
WP_000090998.1\|4283309_4283666_-	hypothetical protein	U5P076	Shigella_phage	5.3e-63	100.0
WP_022630977.1\|4283665_4285162_-\|tail	tail sheath protein	M1FN90	Enterobacteria_phage	7.7e-273	99.0
WP_000497751.1\|4285145_4285316_-	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	9.3e-26	100.0
WP_000779279.1\|4285324_4285885_-	hypothetical protein	M1FQV7	Enterobacteria_phage	2.3e-105	99.5
WP_022630978.1\|4285881_4286388_-	hypothetical protein	M1FPE2	Enterobacteria_phage	5.0e-91	99.4
WP_000702388.1\|4286362_4286773_-\|head	phage head closure protein	M1FJ87	Enterobacteria_phage	5.9e-74	97.8
WP_000927719.1\|4286769_4287093_-\|head,tail	phage gp6-like head-tail connector protein	U5P072	Shigella_phage	1.1e-56	99.1
WP_021577001.1\|4287067_4287295_-	hypothetical protein	S5FNU1	Shigella_phage	2.2e-22	94.9
WP_000257507.1\|4287344_4288550_-\|capsid	phage major capsid protein	M1FPN2	Enterobacteria_phage	1.8e-224	100.0
WP_022630979.1\|4288564_4289224_-\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	1.8e-117	98.6
WP_001514795.1\|4289201_4290443_-\|portal	phage portal protein	U5P411	Shigella_phage	5.0e-241	99.5
WP_000605606.1\|4290442_4290625_-	hypothetical protein	S5FXQ9	Shigella_phage	1.7e-25	100.0
WP_000088161.1\|4290636_4292370_-\|terminase	terminase large subunit	U5P0Q5	Shigella_phage	0.0e+00	100.0
WP_000929174.1\|4292383_4292869_-\|terminase	phage terminase small subunit P27 family	Q8SBI1	Shigella_phage	2.1e-86	99.4
WP_023200328.1\|4292994_4293345_-	HNH endonuclease	M1FQV2	Enterobacteria_phage	2.9e-61	94.0
WP_023259402.1\|4293798_4294191_-	DUF2570 domain-containing protein	U5P0U9	Shigella_phage	1.2e-52	86.0
WP_023200327.1\|4294174_4294651_-	glycoside hydrolase family protein	S5FV07	Shigella_phage	1.4e-87	97.5
WP_023200326.1\|4294654_4294990_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	2.1e-53	92.8
WP_001306866.1\|4295127_4295370_-	hypothetical protein	NA	NA	NA	NA
WP_023200325.1\|4295658_4296411_-	antitermination protein	Q8SBE4	Shigella_phage	1.1e-137	99.2
WP_012513026.1\|4296424_4297414_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	8.9e-193	98.5
WP_001061375.1\|4297421_4298219_-	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	1.3e-149	99.2
WP_000767130.1\|4298238_4298628_-	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	1.6e-68	99.2
WP_000210148.1\|4298624_4298951_-	LexA family transcriptional regulator	A0A0N7KZF7	Stx2-converting_phage	1.0e-52	98.1
WP_000066917.1\|4298947_4299601_-	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	1.9e-127	99.5
WP_000104967.1\|4299695_4300637_-	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	1.3e-153	100.0
WP_001250269.1\|4300626_4300806_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
WP_058652097.1\|4300981_4301533_-	hypothetical protein	S5FXP0	Shigella_phage	3.0e-97	95.6
WP_000187185.1\|4301555_4301804_-	chaperone TorD	NA	NA	NA	NA
WP_000853319.1\|4301939_4302626_+	helix-turn-helix transcriptional regulator	A0A0N7C1P9	Escherichia_phage	2.7e-39	42.0
WP_000389078.1\|4302608_4303499_-	hypothetical protein	U3PB51	Vibrio_phage	4.5e-34	31.6
WP_047624181.1\|4303704_4304013_+	hypothetical protein	I6PDF6	Cronobacter_phage	3.8e-09	80.0
WP_001307125.1\|4303950_4304292_-	hypothetical protein	NA	NA	NA	NA
WP_000008249.1\|4304647_4305184_+	5'-deoxynucleotidase	U5P0T3	Shigella_phage	4.8e-100	98.9
WP_023200800.1\|4305174_4306053_+	phosphoadenosine phosphosulfate reductase family protein	A0A2R2Z314	Escherichia_phage	1.8e-165	92.5
WP_023200799.1\|4306049_4306523_+	ead/Ea22-like family protein	K7PJQ4	Enterobacteria_phage	1.2e-59	70.1
WP_000212745.1\|4306524_4306812_+	hypothetical protein	A0A1I9LJM1	Stx_converting_phage	3.5e-49	98.9
WP_024146004.1\|4307826_4308399_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	7.1e-110	99.5
WP_001093914.1\|4308435_4308708_+	hypothetical protein	S5MQM5	Escherichia_phage	5.7e-41	96.6
WP_000900143.1\|4308741_4309203_-	hypothetical protein	NA	NA	NA	NA
WP_001535325.1\|4309208_4309790_-	SocA family protein	A0A139ZPG5	Marinitoga_camini_virus	8.8e-07	29.6

DBSCAN-SWA_9

4335620 : 4353775

Burkholderia_phage(45.0%)

tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000615248.1\|4335620_4335968_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
WP_001226440.1\|4336543_4336831_+	membrane protein	Q6QIC8	Burkholderia_phage	5.1e-16	48.1
WP_001270438.1\|4336833_4337439_+	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	6.5e-61	60.4
WP_000777266.1\|4337451_4337766_+	membrane protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
WP_000449433.1\|4337925_4338381_+	hypothetical protein	NA	NA	NA	NA
WP_023242908.1\|4338377_4338575_+	hypothetical protein	Q6QIB1	Burkholderia_phage	6.6e-07	52.9
WP_023242909.1\|4338564_4339992_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	8.1e-195	71.2
WP_000907495.1\|4339991_4340516_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
WP_001003640.1\|4340567_4340885_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001185654.1\|4340844_4340973_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_023242910.1\|4341069_4343424_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	3.1e-66	30.6
WP_023242911.1\|4343423_4344377_+	methyl-accepting chemotaxis protein	A4JWL1	Burkholderia_virus	7.9e-37	51.5
WP_001269716.1\|4344376_4344586_+	membrane protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
WP_023244444.1\|4344573_4345617_+	phage late control D family protein	Q6QIA2	Burkholderia_phage	4.2e-76	45.1
WP_000679393.1\|4345626_4346349_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
WP_000593182.1\|4346676_4347039_+	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
WP_000703633.1\|4347035_4347965_+	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	1.4e-150	84.1
WP_000632053.1\|4347964_4349512_+	hypothetical protein	B9UDL6	Salmonella_phage	3.8e-49	29.9
WP_001093501.1\|4349675_4350035_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
WP_001749150.1\|4350025_4351141_+	bacteriophage protein	Q6QI99	Burkholderia_phage	4.1e-101	52.0
WP_001749149.1\|4351133_4351766_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.9e-23	55.6
WP_000368203.1\|4351768_4353250_+\|tail	tail fiber protein	A0A0M3ULF6	Salmonella_phage	1.3e-51	51.7
WP_023244443.1\|4353259_4353775_+\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	1.3e-33	41.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP014620

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection