Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP015196 Streptococcus marmotae strain HTS5 chromosome, complete genome 4 crisprs cas3,WYL,DEDDh,DinG,csa3 2 0 8 0
NZ_CP015197 Streptococcus marmotae strain HTS5 plasmid unnamed 1, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP015198 Streptococcus marmotae strain HTS5 plasmid unnamed 2, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP015196
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015196_1 271260-271424 Unclear NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015196_2 1229810-1229935 Orphan NA
2 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015196_3 1345092-1345169 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015196_4 1493294-1493372 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP015196_3 3.1|1345118|26|NZ_CP015196|CRISPRCasFinder 1345118-1345143 26 NZ_CP015196.1 1375615-1375640 1 0.962
NZ_CP015196_3 3.1|1345118|26|NZ_CP015196|CRISPRCasFinder 1345118-1345143 26 NZ_CP015196.1 14900-14925 1 0.962
NZ_CP015196_3 3.1|1345118|26|NZ_CP015196|CRISPRCasFinder 1345118-1345143 26 NZ_CP015196.1 976743-976768 1 0.962
NZ_CP015196_3 3.1|1345118|26|NZ_CP015196|CRISPRCasFinder 1345118-1345143 26 NZ_CP015196.1 1325337-1325362 1 0.962
NZ_CP015196_4 4.1|1493321|25|NZ_CP015196|CRISPRCasFinder 1493321-1493345 25 NZ_CP015196.1 130715-130739 1 0.96
NZ_CP015196_4 4.1|1493321|25|NZ_CP015196|CRISPRCasFinder 1493321-1493345 25 NZ_CP015196.1 277559-277583 1 0.96
NZ_CP015196_3 3.1|1345118|26|NZ_CP015196|CRISPRCasFinder 1345118-1345143 26 NZ_CP015196.1 1245445-1245470 2 0.923
NZ_CP015196_3 3.1|1345118|26|NZ_CP015196|CRISPRCasFinder 1345118-1345143 26 NZ_CP015196.1 1375667-1375692 2 0.923
NZ_CP015196_3 3.1|1345118|26|NZ_CP015196|CRISPRCasFinder 1345118-1345143 26 NZ_CP015196.1 2242060-2242085 2 0.923
NZ_CP015196_3 3.1|1345118|26|NZ_CP015196|CRISPRCasFinder 1345118-1345143 26 NZ_CP015196.1 1386862-1386887 2 0.923
NZ_CP015196_4 4.1|1493321|25|NZ_CP015196|CRISPRCasFinder 1493321-1493345 25 NZ_CP015196.1 1533442-1533466 2 0.92

1. spacer 3.1|1345118|26|NZ_CP015196|CRISPRCasFinder matches to position: 1375615-1375640, mismatch: 1, identity: 0.962

atagaacgagcgcagcttgccccttg	CRISPR spacer
atagaacgagcgcagctcgccccttg	Protospacer
*****************.********

2. spacer 3.1|1345118|26|NZ_CP015196|CRISPRCasFinder matches to position: 14900-14925, mismatch: 1, identity: 0.962

atagaacgagcgcagcttgccccttg	CRISPR spacer
atagaacgagcgcagctcgccccttg	Protospacer
*****************.********

3. spacer 3.1|1345118|26|NZ_CP015196|CRISPRCasFinder matches to position: 976743-976768, mismatch: 1, identity: 0.962

atagaacgagcgcagcttgccccttg	CRISPR spacer
atagaacgagcgcagctcgccccttg	Protospacer
*****************.********

4. spacer 3.1|1345118|26|NZ_CP015196|CRISPRCasFinder matches to position: 1325337-1325362, mismatch: 1, identity: 0.962

atagaacgagcgcagcttgccccttg	CRISPR spacer
atagaacgagcgcagattgccccttg	Protospacer
*************** **********

5. spacer 4.1|1493321|25|NZ_CP015196|CRISPRCasFinder matches to position: 130715-130739, mismatch: 1, identity: 0.96

gttacaactgaggctccctttagtg	CRISPR spacer
gttacagctgaggctccctttagtg	Protospacer
******.******************

6. spacer 4.1|1493321|25|NZ_CP015196|CRISPRCasFinder matches to position: 277559-277583, mismatch: 1, identity: 0.96

gttacaactgaggctccctttagtg	CRISPR spacer
gttacagctgaggctccctttagtg	Protospacer
******.******************

7. spacer 3.1|1345118|26|NZ_CP015196|CRISPRCasFinder matches to position: 1245445-1245470, mismatch: 2, identity: 0.923

atagaacgagcgcagcttgccccttg	CRISPR spacer
atagaacgagcgtagctcgccccttg	Protospacer
************.****.********

8. spacer 3.1|1345118|26|NZ_CP015196|CRISPRCasFinder matches to position: 1375667-1375692, mismatch: 2, identity: 0.923

atagaacgagcgcagcttgccccttg	CRISPR spacer
atagaacgagcgtagctcgccccttg	Protospacer
************.****.********

9. spacer 3.1|1345118|26|NZ_CP015196|CRISPRCasFinder matches to position: 2242060-2242085, mismatch: 2, identity: 0.923

atagaacgagcgcagcttgccccttg	CRISPR spacer
atagaacgagcgtagctcgccccttg	Protospacer
************.****.********

10. spacer 3.1|1345118|26|NZ_CP015196|CRISPRCasFinder matches to position: 1386862-1386887, mismatch: 2, identity: 0.923

atagaacgagcgcagcttgccccttg	CRISPR spacer
atagaacgagcgcagctcgctccttg	Protospacer
*****************.**.*****

11. spacer 4.1|1493321|25|NZ_CP015196|CRISPRCasFinder matches to position: 1533442-1533466, mismatch: 2, identity: 0.92

gttacaactgaggctccctttagtg	CRISPR spacer
gttacagcagaggctccctttagtg	Protospacer
******.* ****************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 41641 : 53117 14 Streptococcus_phage(91.67%) NA NA
DBSCAN-SWA_2 436507 : 446037 15 Streptococcus_phage(71.43%) protease NA
DBSCAN-SWA_3 892658 : 983608 115 Streptococcus_phage(66.0%) holin,tail,capsid,integrase,tRNA,transposase,portal,terminase attL 898780:898795|attR 958247:958262
DBSCAN-SWA_4 1084394 : 1131256 38 Streptococcus_phage(33.33%) transposase,tRNA,protease NA
DBSCAN-SWA_5 1692624 : 1700985 9 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_6 1929165 : 1940148 11 Streptococcus_phage(25.0%) transposase,integrase attL 1922543:1922556|attR 1942682:1942695
DBSCAN-SWA_7 1960011 : 2022090 55 Streptococcus_phage(25.0%) transposase,bacteriocin,holin NA
DBSCAN-SWA_8 2099921 : 2185969 108 Streptococcus_phage(64.41%) holin,tail,capsid,integrase,protease,bacteriocin,portal,terminase attL 2128470:2128486|attR 2165219:2165235
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage