CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015378	Fictibacillus phosphorivorans strain G25-29 chromosome, complete genome	1 crisprs	csa3,DinG,DEDDh,WYL,cas3	2	2	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015378_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015378_1

2877557-2877976

Orphan

Consensus_repeat	Method
ACCCATCTGNNNCATTCCTGGCATTCC	CRT

8 spacers

The CRISPR arrays of NZ_CP015378_1

>merge|NZ_CP015378|1|2877557-2877976|CRT
ACCCATCTGACCCATTCCCGGCATTCCACCACCTTGTGGCATCATACCCATCTGAGGCATTCCTGGCATTCCTCCACCTTGTGGCATCATACCCATCTGTGGCATTCCCGGCATTCCGCCTCCTTGTGGCATCATACCCATCTGTGGCATTCCTGGCATTCCTCCACCTTGTGGCATCATACCCATCTGACCCATCTGTGGCATTCCTGGCATTCCGCCTCCTTGTGGCATCATACCCATCTGTGGCATTCCTGGCATTCCTCCACCTTGTGGCATCATACCCATCTGACCCATCTGTGGCATTCCTGGCATTCCGCCTCCTTGTGGCATCATACCCATCTGGCCCATCTGTGGCATTCCACTATATCCTTGAGGCATACCCATAGGCATCATACCCATCGATCCTGGCTGTTGCATACC

>NZ_CP015378|1|1|2877557-2877976|CRT
ACCCATCTGACCCATTCCCGGCATTCC	ACCACCTTGTGGCATCAT
ACCCATCTGAGGCATTCCTGGCATTCC	TCCACCTTGTGGCATCAT
ACCCATCTGTGGCATTCCCGGCATTCC	GCCTCCTTGTGGCATCAT
ACCCATCTGTGGCATTCCTGGCATTCC	TCCACCTTGTGGCATCATACCCATCTG
ACCCATCTGTGGCATTCCTGGCATTCC	GCCTCCTTGTGGCATCAT
ACCCATCTGTGGCATTCCTGGCATTCC	TCCACCTTGTGGCATCATACCCATCTG
ACCCATCTGTGGCATTCCTGGCATTCC	GCCTCCTTGTGGCATCAT
ACCCATCTGGCCCATCTGTGGCATTCC	ACTATATCCTTGAGGCATACCCATAGGCATCAT
ACCCATCGATCCTGGCTGTTGCATACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015378.1\|WP_082861454.1\|2881024_2882605_-\|L-aspartate-oxidase	unknown	unknown	gnl\|CDD\|236147
NZ_CP015378.1\|WP_066396495.1\|2871011_2871284_-\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|235518
NZ_CP015378.1\|WP_066396520.1\|2884978_2886265_-\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|237046
NZ_CP015378.1\|WP_082861456.1\|2886283_2886823_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379668
NZ_CP015378.1\|WP_066400218.1\|2880210_2881071_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	unknown	unknown	gnl\|CDD\|181221
NZ_CP015378.1\|WP_066396502.1\|2873895_2874897_-\|Holliday-junction-branch-migration-DNA-helicase-RuvB	unknown	unknown	gnl\|CDD\|234619
NZ_CP015378.1\|WP_066396509.1\|2876451_2877432_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131952
NZ_CP015378.1\|WP_066396499.1\|2872485_2873514_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666
NZ_CP015378.1\|WP_066396490.1\|2869742_2870402_-\|DUF421-domain-containing-protein	unknown	unknown	gnl\|CDD\|225205
NZ_CP015378.1\|WP_066396513.1\|2879138_2880236_-\|quinolinate-synthase-NadA	unknown	unknown	gnl\|CDD\|236489
NZ_CP015378.1\|WP_082861455.1\|2882681_2883854_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|179511
NZ_CP015378.1\|WP_066396515.1\|2883850_2884378_+\|transcription-repressor-NadR	unknown	unknown	gnl\|CDD\|224740
NZ_CP015378.1\|WP_066239506.1\|2886948_2887239_-\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
NZ_CP015378.1\|WP_066396504.1\|2874911_2875505_-\|Holliday-junction-branch-migration-protein-RuvA	unknown	unknown	gnl\|CDD\|234645
NZ_CP015378.1\|WP_066396507.1\|2875791_2876379_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378211
NZ_CP015378.1\|WP_066396518.1\|2884415_2884862_-\|ACT-domain-containing-protein	unknown	unknown	gnl\|CDD\|179848
NZ_CP015378.1\|WP_066396524.1\|2887231_2887585_-\|ribosomal-processing-cysteine-protease-Prp	unknown	unknown	gnl\|CDD\|184740
NZ_CP015378.1\|WP_066396501.1\|2873707_2873899_-\|DUF2905-domain-containing-protein	unknown	unknown	gnl\|CDD\|378570
NZ_CP015378.1\|WP_066396497.1\|2871325_2872468_-\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NZ_CP015378.1\|WP_082861581.1\|2870603_2870987_+\|TIGR04086-family-membrane-protein	unknown	unknown	gnl\|CDD\|274969

Protein	Function_ID	Function_description	E-value
NZ_CP015378.1\|WP_082861454.1\|2881024_2882605_-\|L-aspartate-oxidase	gnl\|CDD\|236147	PRK08071, PRK08071, L-aspartate oxidase; Provisional.	0
NZ_CP015378.1\|WP_066396495.1\|2871011_2871284_-\|preprotein-translocase-subunit-YajC	gnl\|CDD\|235518	PRK05585, yajC, preprotein translocase subunit YajC; Validated.	3.40371e-37
NZ_CP015378.1\|WP_066396520.1\|2884978_2886265_-\|GTPase-ObgE	gnl\|CDD\|237046	PRK12297, obgE, GTPase CgtA; Reviewed.	0
NZ_CP015378.1\|WP_082861456.1\|2886283_2886823_-\|hypothetical-protein	gnl\|CDD\|379668	pfam14689, SPOB_a, Sensor_kinase_SpoOB-type, alpha-helical domain. Sporulation initiation phospho-transferase B or SpoOB is part of a phospho-relay that initiates sporulation in Bacillus subtilis. Spo0B is a two-domain protein consisting of an N-terminal alpha-helical hairpin domain and a C-terminal alpha/beta domain. Two subunits of Spo0B dimerize by a parallel association of helical hairpins to form a novel four-helix bundle from which the active histidine - involved in the auto-phosphorylation - protrudes. In the phospho-relay, the signal-receptor histidine kinases are dephosphorylated by a common response regulator, Spo0F. Spo0B then takes phosphorylated Spo0F as substrate thereby mediating the transfer of a phosphoryl group to Spo0A, the ultimate transcription factor. The exact function of this alpha-helical domain is not known; it does not always occur just as the N-terminal domain of SPOB_ab, pfam14682. SCOP describes this domain as a histidine kinase-like fold lacking the kinase ATP-binding site.	1.93809e-16
NZ_CP015378.1\|WP_066400218.1\|2880210_2881071_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	gnl\|CDD\|181221	PRK08072, PRK08072, carboxylating nicotinate-nucleotide diphosphorylase.	1.05634e-153
NZ_CP015378.1\|WP_066396502.1\|2873895_2874897_-\|Holliday-junction-branch-migration-DNA-helicase-RuvB	gnl\|CDD\|234619	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB.	0
NZ_CP015378.1\|WP_066396509.1\|2876451_2877432_-\|hypothetical-protein	gnl\|CDD\|131952	TIGR02906, Spore_coat_protein_S, spore coat protein, CotS family. Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers. [Cellular processes, Sporulation and germination].	2.87909e-07
NZ_CP015378.1\|WP_066396499.1\|2872485_2873514_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
NZ_CP015378.1\|WP_066396490.1\|2869742_2870402_-\|DUF421-domain-containing-protein	gnl\|CDD\|225205	COG2323, COG2323, Predicted membrane protein [Function unknown].	2.74535e-67
NZ_CP015378.1\|WP_066396513.1\|2879138_2880236_-\|quinolinate-synthase-NadA	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	1.35054e-148
NZ_CP015378.1\|WP_082861455.1\|2882681_2883854_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|179511	PRK02948, PRK02948, IscS subfamily cysteine desulfurase.	7.58665e-143
NZ_CP015378.1\|WP_066396515.1\|2883850_2884378_+\|transcription-repressor-NadR	gnl\|CDD\|224740	COG1827, COG1827, Predicted small molecule binding protein (contains 3H domain) [General function prediction only].	6.5662e-55
NZ_CP015378.1\|WP_066239506.1\|2886948_2887239_-\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	1.32888e-50
NZ_CP015378.1\|WP_066396504.1\|2874911_2875505_-\|Holliday-junction-branch-migration-protein-RuvA	gnl\|CDD\|234645	PRK00116, ruvA, Holliday junction branch migration protein RuvA.	2.5919e-84
NZ_CP015378.1\|WP_066396507.1\|2875791_2876379_-\|hypothetical-protein	gnl\|CDD\|378211	pfam09580, Spore_YhcN_YlaJ, Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ). This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.	5.29825e-14
NZ_CP015378.1\|WP_066396518.1\|2884415_2884862_-\|ACT-domain-containing-protein	gnl\|CDD\|179848	PRK04435, PRK04435, ACT domain-containing protein.	1.97317e-79
NZ_CP015378.1\|WP_066396524.1\|2887231_2887585_-\|ribosomal-processing-cysteine-protease-Prp	gnl\|CDD\|184740	PRK14553, PRK14553, ribosomal-processing cysteine protease Prp.	1.62586e-38
NZ_CP015378.1\|WP_066396501.1\|2873707_2873899_-\|DUF2905-domain-containing-protein	gnl\|CDD\|378570	pfam11146, DUF2905, Protein of unknown function (DUF2905). This is a family of bacterial proteins conserved of unknown function.	1.37054e-11
NZ_CP015378.1\|WP_066396497.1\|2871325_2872468_-\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0
NZ_CP015378.1\|WP_082861581.1\|2870603_2870987_+\|TIGR04086-family-membrane-protein	gnl\|CDD\|274969	TIGR04086, hypothetical_protein, putative membrane protein, TIGR04086 family. Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. The function is unknown.	3.87998e-18

>NZ_CP015378.1|WP_066396509.1|2876451_2877432_-|hypothetical-protein
MNRDVRDDFQGDRLFLKKMNELGLEVIDFGFFRENVIWIKTKQGKFVLKGFSRSETCNKQLKLSKLYHGQKQRIMGTYTSYPNQKKTVQFGKYIWAIMPFYKGEGLHFGNKDDVKAGVEAISRFHSFSKNIPLPLYEQLSSYSLFKKWSDRLDAFKFHARSANWNHQMRPLISEIIMWGEWSLNHFDHEAVEKLENKAYKKKEITHGDVAPHNFVKYKEKDTYLIDFDLFAAVPQAFDWLQYANRILPFWHWSYETMEEVGNEDFLKWFTKRWFVISLVFPTDLYREWNRALKTGDKEMIDAVTRFTLRDFSHRKKFIEKIMKRMS
>NZ_CP015378.1|WP_066396507.1|2875791_2876379_-|hypothetical-protein
MNFLGKSLTVTILAVGLVGCNGVNESQDKNDNDVRPIGYYSNEGDNRGDLDRGNGFITDMTDRDVNDHTATYHEDYDGKLAERIAKNVNDIRGVDDAHVILEDNNVIVGIDTDKKKKTELTNKVREITSKLAPNRDVKIVADRNMVNRIENVDNNLRDGRAYTEVESDVRGISNDIVNAGSDLGNAIKRPFENNR
>NZ_CP015378.1|WP_066396504.1|2874911_2875505_-|Holliday-junction-branch-migration-protein-RuvA
MIESISGNVDYITAEYIVINNNGIGYKILCPNPFIYKLNDQKTVYTYQYVREDILALYGFKNRKERDLFLKLLNVSGIGPKGALAIVAFGQPEQVVNAIEQEDEKFLTKFPGVGKKTARQMILDLKGKISIFADAEFTDGLFADVEPESDELDEALEALAVLGYGRKEIQKILPELKKEKMSANEYVKAALKKLMNS
>NZ_CP015378.1|WP_066396502.1|2873895_2874897_-|Holliday-junction-branch-migration-DNA-helicase-RuvB
MEERIVSSEERQDEANIELSLRPELLDEYIGQTSVKDNLRIFIKAAKIRNEPLDHVLLYGPPGLGKTTLASIIANEMEVNLRTTSGPAIERPGDLAAILTSLEPGDVLFIDEIHRLSRAIEEILYSAMEDFCLDIVIGKGEVARSVRLDLPPFTLIGATTRAGSLSAPLRDRFGVLARLEYYKPDELGEIVRRTGDVFGVRVDDLSAEEIARRSRGTPRIANRLLRRVRDFVQVEGKDTISLPICQKALELLQVDRLGLDHIDHKLLLGIIHTYKGGPVGLETISATIGEESMTIEDVYEPYLLQIGFLQRTPRGRMVTEQAYQYFGLEASAD
>NZ_CP015378.1|WP_066396501.1|2873707_2873899_-|DUF2905-domain-containing-protein
MNRLLIVAGIVLIIIGLVGTYIGKLPGDMVWKKGNTTVYFPIMTSIIISVVLSLIFMIIGRFK
>NZ_CP015378.1|WP_066396499.1|2872485_2873514_-|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MNVNDFDFHLPEELIAQTPLENRTSSRLMVLDRKQETVEHKHFYDLKNYLKAGDCLVLNDTRVLPARLFGQKSDTGGKVEVLLLKEEGNDTWETLVKPAKRIKPGTEISFGDGRLKAVCTGESDHGGRQLKFIYDGIFYELLDDLGQMPLPPYIKEQLEEKDRYQTVYAVHQGSAAAPTAGLHFTTELIEEIKAMGVHVTFITLHVGLGTFRPVSVENVLEHDMHAEFYQVTKGTAELLNGVKEAGGRIITVGTTSTRTLETVANKFDGKFEEDSGWTDIFIYPGYSFKAIDGLITNFHLPKSTLIMLVSALASKDFVLRAYHEAVEEKYRFFSFGDAMLIL
>NZ_CP015378.1|WP_066396497.1|2871325_2872468_-|tRNA-guanosine(34)-transglycosylase-Tgt
MKPAVTYELIKTCKQSGARLGKVHTPHGTFETPIFMPVGTLATVKTMSPEELKELGAEIILSNTYHLWLRPGHDIVKEAGGLHKFMNWDRPILTDSGGFQVFSLSDLREIKEEGVHFRNHLSGEKLFLSPEGAMEIQNALGSDIMMAFDECPPYPAEYDYMKASVERTSRWAERCLKGHGRPQDQALFGIVQGGEYEELRKQSARDLVSLDFPGYAVGGLSVGEPKDVMNRVLDFTTPHLPENKPRYLMGVGSPDSLIDGAIRGIDMFDCVLPTRIARNGTCMTSEGRLVVRNAKYARDFRPIDEKCDCHVCRTYSRAYIRHLVKANETFGFRLTSYHNLYFLVNLMKQVRQAIMEDRLLDFRNEFFEMYGFNKPNARNF
>NZ_CP015378.1|WP_066396495.1|2871011_2871284_-|preprotein-translocase-subunit-YajC
MGGSLGGILPIILMFAIFYFLLIRPQQKRQKAVREMQSNLKKGDKVVTIGGLHGTLDSIDDNIAVIRSNDGAKLTFDRNAIREVKEEAVL
>NZ_CP015378.1|WP_082861581.1|2870603_2870987_+|TIGR04086-family-membrane-protein
MKHMASSMGRGLIAVLLMIMLCSLVLSLLLRFTGLTEASLKWVTVGLSFLSLFIGGLISGKKGQSKGWLLGGGTSLLFSFLVFLIQYLGYQSTFNSSQYMYHALFLLLAIIGGIMGVNFSSHKQTYK
>NZ_CP015378.1|WP_066396490.1|2869742_2870402_-|DUF421-domain-containing-protein
MELYTVIFRTLFIYFLIMVIFRMMGKREMGKLSIIDFVVSIMIAELAVISIEDPTIPMLNSLVSIFVLLSIQLILALISLKSRRMREIVDGKPSLIIKEGQVDEHEMKKQRYNFDDLLTQLRENNIRSLNEVEFGILETTGKLSIIKKDEESENTPIQMIMPLILDGKILEDNLEKMDKTSFWLRQELKKVGFKEIKNISFCTLNEDGTLYVDELNSKK
>NZ_CP015378.1|WP_066396513.1|2879138_2880236_-|quinolinate-synthase-NadA
MTLLKTFSKTNTLPERYSKMSVEEMVARVHEIKNLLGKRLFLPAHHYQKDEIVQFADVTGDSLQLAKISAENKDADYIVFCGVHFMAETADMLSADNQIVILPDLKAGCSMADMANIHQTERAWIELQKLFGDTILPLTYVNSTAEIKAFCGKNGGATVTSSNAKEMVSWAFDQKERLLFLPDQHLGRNTAYDLGVPLEDMAIWDPISNQLIFDGTNLEQVKVILWKGHCSVHEKFTVDQIADFRENHSEFQIIVHPECTHEVVRASDLNGSTHFIIETIKHAEPGTSWAVGTEMNLVNRLAQQFSDKKIVSLNPNLCPCLTMNRIDLPHLLWSLKNIIEGKVENVIKVDEETKKYAITALNRMM
>NZ_CP015378.1|WP_066400218.1|2880210_2881071_-|carboxylating-nicotinate-nucleotide-diphosphorylase
MNPLLLKKQLQEFLIEDIGSGDLSASLFEDHTEVTATIIAKENGVMAGAQILSIGYELIDQTVQTSIFVNDGERFDRGTVLAEITGRRQSVLSGERVILNLLQRLSGIAKLTAKAVSSCEGETRICDTRKTTPGLRMFEKYAVRCGGGFNHRFGLYDTIMLKDNHLAGFPSIRDAVETAREKCGHTVKIEVETETEEQVIEAVLAGADIIMFDNCSPEEIKQRLTHVPPHIITEASGGITLEEIKEYSETGVDYISLGYLTHSYKALDISMNVKGAVKHDVTKNVL
>NZ_CP015378.1|WP_082861454.1|2881024_2882605_-|L-aspartate-oxidase
MKQVEADVLIIGGGIAGLMAAEYLSSHKNVIVITKFSAEKSNSFLAQGGISAAIDKEDSWAEHFLDTLKAGHHHNDQEAVKQLVKEGKSVVRTLTEWGVSFDRHENGSFMLGKEGGHHRNRIVHAGGDQTGKKVIETLISRVRNKVKIVSHQYAVDLIIQNHKCIGVYGKDDKNQTTIFQAKTTILAGGGYAGIYGTTSNSYGSDGSVLGMAYRAGVELSDLEFVQFHPTLLSGRVPAGLITEAVRGQGGILVNSSGVSFMQDVHPLKDLAPRDIVSKRLFQEIHEYGEKVYLDISSIKGFRDKFPGVTMLCENADIDLNKGLIPVSPGAHFTMGGIVTDLSGKTSLRGLYAIGECANTGVHGANRLASNSLLEGAVFAKAAATSILSSEELDNQSLFLKRKKMKDEKEIQHKDLLVEEDIQRLMDKYAGIVRNKEELEMAAKTLELRSWKPDLIKQPLSVIKRFNMQTIAWLTVTSCLKREESRGSHYRKDFPTQKNDWDSKKITRSLWHDESIIAEKTAAGIFN
>NZ_CP015378.1|WP_082861455.1|2882681_2883854_+|aminotransferase-class-V-fold-PLP-dependent-enzyme
MKTEVETLIYLDYAATTPLSDSALSAFVQTSKTYFQNTESLHEGGLAARDLLEHARRTLAELLGKDSEGIYFTGGGSDGNFLAVTSLAHGANDKGKHIISSNIEHPSVDYVLRFLENNGYEITRIPVQKNGKISINTLLSSIRPDTTLVTIQHVNSETGIVQNIKEISERLKERDVLFHSDCVQSFGKWDNRYFRSMHIDAFTMSAHKIHGPKGTGAVYISPSVHIAPLLSEVTHERGFRAGTVDLPSIAAFVTAAEEAFHLQHEHYQHAVDMRKQFISSILTDKSIVFEGHDDSSPFIIPIRTKGMEGQIVMQELDRLKIAVSTGSACKNGQQAPSKTLLALGRSESEAHELVRISTSHQTTSEEITLLGKALIEITNTFRSVSEVITR
>NZ_CP015378.1|WP_066396515.1|2883850_2884378_+|transcription-repressor-NadR
MSNEKLKGDERRSQLIAWLMSADKPLSGSILASKTNVSRQVIVQDMSLLKASGEPIMATAQGYIYLKNDSNKQYSRVIAANHPPEETTNELLTIVDYGVTVEDVTVEHPVYGDIKASLKLSTRKDVEDLIKRLRETNASLLSELTEGIHMHTLSSDSEEKLDKVCGALKEKGFLL
>NZ_CP015378.1|WP_066396518.1|2884415_2884862_-|ACT-domain-containing-protein
MKNDQQYYMVREDVLSESMQKALEAKSLLERGKVKTVAEAAEKVGLSRSAFYKYRDGIFPFHTMVKEKIITLSLHLEDRSGALSSLLTVVASQGCNVLTINQTIPLQGRAHITLTIETNMLQGDMKDLLSTLNRMETVERVEVVGTGA
>NZ_CP015378.1|WP_066396520.1|2884978_2886265_-|GTPase-ObgE
MFVDQVKIYLKAGDGGNGMVAFRREKYVPDGGPAGGDGGKGANVIFEVEEGLRTLMDFRYNRHFKAPRGEHGMSKGMHGKKANDMIVKVPPGTVVTDANTGETIADLVHHQQQAIVAKGGRGGRGNTRFATPANPAPEIAENGEPGEEREVTLELKVLADVGLVGFPSVGKSTFLSIVSAAKPKIAEYHFTTITPNLGVVAVEDGRSFVMADLPGLIEGAHEGIGLGHQFLRHIERTRVILHVIDMSGMEGRDPYDDFVKINDELNQYNMRLMERPQIVLANKMDIPGAEENLEIFKEKVGEDVKVFPISAISRQGIREVLFTTADTLEVTPEFPLIHDDGGEQQRVLYKHEKEDAGFYITRDPAGIFVINGPKIEKLFKMTDFSREEATKRFARQMRTLGVDQALRDRGAEHGDVVRILKYEFEFID
>NZ_CP015378.1|WP_082861456.1|2886283_2886823_-|hypothetical-protein
MMSNKWTTVDLLRHARHDWLNQLQLIKANLSLGRTERAKEIMNEVIELSREESRISNLKTPNLSEYLLTYNWLKHPVKLYGKVNGESGDFSLFEEELLHTTKEVCDVLNNSISGYDEYSLTVTFDPAALRVCYAFQGALTDEKDTYEVLRNIFSTHKSMLLIESYNQENKCYFDIQLTS
>NZ_CP015378.1|WP_066239506.1|2886948_2887239_-|50S-ribosomal-protein-L27
MLKLNLQYFASKKGVGSTKNGRDSQSKRLGAKRADGQFVSGGSILYRQRGTKIYPGTNVGKGGDDTLFAKVDGVVRFERYGRDRKKVSVYPIAQEA
>NZ_CP015378.1|WP_066396524.1|2887231_2887585_-|ribosomal-processing-cysteine-protease-Prp
MILVSIYRNKDQDILSFTMEGHADYAPHGQDLVCAAATAVSFGTINAIEKLCGYEPEVTTHEDGGLLTLSVPSNLDDSIHQKTQWLLEGMIVSLASIEEGYSEYIKLTEHEGGATNA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP015378_1	1.4\|2877719\|27\|NZ_CP015378\|CRT	2877719-2877745	27	NZ_CP015378.1	2877539-2877565	2	0.926
NZ_CP015378_1	1.6\|2877818\|27\|NZ_CP015378\|CRT	2877818-2877844	27	NZ_CP015378.1	2877539-2877565	2	0.926

1. spacer 1.4|2877719|27|NZ_CP015378|CRT matches to position: 2877539-2877565, mismatch: 2, identity: 0.926

tccaccttgtggcatcatacccatctg	CRISPR spacer
tccaccctgcggcatcatacccatctg	Protospacer
******.**.*****************

2. spacer 1.6|2877818|27|NZ_CP015378|CRT matches to position: 2877539-2877565, mismatch: 2, identity: 0.926

tccaccttgtggcatcatacccatctg	CRISPR spacer
tccaccctgcggcatcatacccatctg	Protospacer
******.**.*****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP015378_1	1.4\|2877719\|27\|NZ_CP015378\|CRT	2877719-2877745	27	MN693268	Marine virus AFVG_25M194, complete genome	14873-14899	6	0.778
NZ_CP015378_1	1.4\|2877719\|27\|NZ_CP015378\|CRT	2877719-2877745	27	GU071095	Synechococcus phage S-SM2, complete genome	109916-109942	6	0.778
NZ_CP015378_1	1.6\|2877818\|27\|NZ_CP015378\|CRT	2877818-2877844	27	MN693268	Marine virus AFVG_25M194, complete genome	14873-14899	6	0.778
NZ_CP015378_1	1.6\|2877818\|27\|NZ_CP015378\|CRT	2877818-2877844	27	GU071095	Synechococcus phage S-SM2, complete genome	109916-109942	6	0.778
NZ_CP015378_1	1.4\|2877719\|27\|NZ_CP015378\|CRT	2877719-2877745	27	MN693238	Marine virus AFVG_25M402, complete genome	41229-41255	7	0.741
NZ_CP015378_1	1.4\|2877719\|27\|NZ_CP015378\|CRT	2877719-2877745	27	MN693457	Marine virus AFVG_25M365, complete genome	42399-42425	7	0.741
NZ_CP015378_1	1.6\|2877818\|27\|NZ_CP015378\|CRT	2877818-2877844	27	MN693238	Marine virus AFVG_25M402, complete genome	41229-41255	7	0.741
NZ_CP015378_1	1.6\|2877818\|27\|NZ_CP015378\|CRT	2877818-2877844	27	MN693457	Marine virus AFVG_25M365, complete genome	42399-42425	7	0.741

1. spacer 1.4|2877719|27|NZ_CP015378|CRT matches to MN693268 (Marine virus AFVG_25M194, complete genome) position: , mismatch: 6, identity: 0.778

tccaccttgtggcatcatacccatctg	CRISPR spacer
ataaccttgtggcatcatacccataga	Protospacer
 . *********************  .

2. spacer 1.4|2877719|27|NZ_CP015378|CRT matches to GU071095 (Synechococcus phage S-SM2, complete genome) position: , mismatch: 6, identity: 0.778

tccaccttgtggcatcatacccatctg	CRISPR spacer
cataccttgtggcatcatcctcatctt	Protospacer
. .*************** *.*****

3. spacer 1.6|2877818|27|NZ_CP015378|CRT matches to MN693268 (Marine virus AFVG_25M194, complete genome) position: , mismatch: 6, identity: 0.778

tccaccttgtggcatcatacccatctg	CRISPR spacer
ataaccttgtggcatcatacccataga	Protospacer
 . *********************  .

4. spacer 1.6|2877818|27|NZ_CP015378|CRT matches to GU071095 (Synechococcus phage S-SM2, complete genome) position: , mismatch: 6, identity: 0.778

tccaccttgtggcatcatacccatctg	CRISPR spacer
cataccttgtggcatcatcctcatctt	Protospacer
. .*************** *.*****

5. spacer 1.4|2877719|27|NZ_CP015378|CRT matches to MN693238 (Marine virus AFVG_25M402, complete genome) position: , mismatch: 7, identity: 0.741

tccaccttgtggcatcatacccatctg	CRISPR spacer
ataaccttgtgggatcatacccatgct	Protospacer
 . ********* *********** .

6. spacer 1.4|2877719|27|NZ_CP015378|CRT matches to MN693457 (Marine virus AFVG_25M365, complete genome) position: , mismatch: 7, identity: 0.741

tccaccttgtggcatcatacccatctg	CRISPR spacer
ataaccttgtgggatcatacccatgct	Protospacer
 . ********* *********** .

7. spacer 1.6|2877818|27|NZ_CP015378|CRT matches to MN693238 (Marine virus AFVG_25M402, complete genome) position: , mismatch: 7, identity: 0.741

tccaccttgtggcatcatacccatctg	CRISPR spacer
ataaccttgtgggatcatacccatgct	Protospacer
 . ********* *********** .

8. spacer 1.6|2877818|27|NZ_CP015378|CRT matches to MN693457 (Marine virus AFVG_25M365, complete genome) position: , mismatch: 7, identity: 0.741

tccaccttgtggcatcatacccatctg	CRISPR spacer
ataaccttgtgggatcatacccatgct	Protospacer
 . ********* *********** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

237248 : 245777

Synechococcus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066390818.1\|237248_238541_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.7e-18	32.2
WP_066390819.1\|238881_239604_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3HWF9	Synechococcus_phage	9.2e-46	42.7
WP_066242802.1\|239591_239846_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_066390821.1\|239842_240526_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_066390822.1\|240509_242741_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.2e-163	40.6
WP_066399607.1\|242716_244135_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	7.8e-49	32.6
WP_066390823.1\|244149_245190_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3FC27	Synechococcus_phage	2.1e-67	41.7
WP_066390824.1\|245186_245777_+	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	2.7e-27	35.6

DBSCAN-SWA_2

638906 : 647464

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066391318.1\|638906_639554_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.8e-40	42.3
WP_066391320.1\|639565_640759_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	5.8e-114	51.3
WP_066239884.1\|640775_641243_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.0e-45	58.7
WP_066391324.1\|641974_643732_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	2.6e-49	32.2
WP_066391325.1\|643734_645759_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	3.8e-49	30.8
WP_082861261.1\|646036_647464_+	hypothetical protein	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-14	30.1

DBSCAN-SWA_3

2007061 : 2037843

Bacillus_phage(22.22%)

tail,protease,integrase,head,portal

attL 2004073:2004088|attR 2041853:2041868

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2004073:2004088	attL	NA	NA	NA	NA
WP_156499151.1\|2007061_2007580_-\|protease	DJ-1/PfpI/YhbO family deglycase/protease	NA	NA	NA	NA
WP_066394345.1\|2007661_2008168_-	hypothetical protein	NA	NA	NA	NA
WP_066394347.1\|2008486_2010931_-	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	3.7e-107	32.1
WP_082861567.1\|2010944_2012885_-	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	6.1e-129	43.8
WP_066394352.1\|2013111_2013519_-	CoA-binding protein	NA	NA	NA	NA
WP_066394360.1\|2013764_2015285_-	carboxypeptidase M32	NA	NA	NA	NA
WP_066394365.1\|2015386_2015566_-	hypothetical protein	NA	NA	NA	NA
WP_066394370.1\|2016259_2016511_-	hypothetical protein	NA	NA	NA	NA
WP_066394372.1\|2016533_2016731_-	hypothetical protein	NA	NA	NA	NA
WP_066394375.1\|2016991_2017204_+	helix-turn-helix transcriptional regulator	S5MNP8	Brevibacillus_phage	7.1e-07	40.9
WP_066394377.1\|2017307_2017556_-	hypothetical protein	NA	NA	NA	NA
WP_066394380.1\|2017727_2018036_-	hypothetical protein	NA	NA	NA	NA
WP_066394383.1\|2018196_2018505_+	hypothetical protein	NA	NA	NA	NA
WP_156499152.1\|2018582_2018786_+	hypothetical protein	NA	NA	NA	NA
WP_066394387.1\|2018807_2019548_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_082861380.1\|2019603_2020290_-	hypothetical protein	D6QWP4	uncultured_phage	1.1e-45	45.9
WP_066394390.1\|2020270_2020459_-	hypothetical protein	NA	NA	NA	NA
WP_066394393.1\|2020472_2020757_-	hypothetical protein	NA	NA	NA	NA
WP_066394395.1\|2020817_2021231_-	hypothetical protein	NA	NA	NA	NA
WP_066394398.1\|2021300_2022440_-	hypothetical protein	A0A0K2CZQ1	Paenibacillus_phage	6.4e-86	43.1
WP_066394404.1\|2022485_2022755_-	hypothetical protein	NA	NA	NA	NA
WP_066394413.1\|2022884_2023178_-	hypothetical protein	NA	NA	NA	NA
WP_066394414.1\|2023592_2023907_-	hypothetical protein	NA	NA	NA	NA
WP_066394416.1\|2023908_2024937_-	PQQ-like beta-propeller repeat protein	NA	NA	NA	NA
WP_066394418.1\|2024939_2025866_-	hypothetical protein	A0A0C5ABC3	Paenibacillus_phage	6.1e-34	37.3
WP_066394422.1\|2025880_2026732_-\|tail	phage tail family protein	A0A0K2CZA8	Paenibacillus_phage	2.3e-48	37.8
WP_066394424.1\|2026732_2028892_-	hypothetical protein	W8EBC4	Geobacillus_phage	1.1e-102	40.6
WP_066394426.1\|2028899_2029193_-	hypothetical protein	A0A0K1LMC7	Bacillus_phage	1.1e-10	41.8
WP_066394428.1\|2029201_2029555_-	hypothetical protein	NA	NA	NA	NA
WP_066394433.1\|2029574_2029979_-\|tail	phage major tail protein, TP901-1 family	X2KQD5	Enterococcus_phage	5.7e-13	34.9
WP_066394437.1\|2029990_2030395_-	DUF3168 domain-containing protein	A0A0K1LLG5	Bacillus_phage	8.8e-22	43.7
WP_066394439.1\|2030391_2030823_-	HK97 gp10 family phage protein	H9YPP9	environmental_Halophage	4.7e-13	38.5
WP_066394441.1\|2030819_2031137_-\|head	phage head closure protein	NA	NA	NA	NA
WP_066394443.1\|2031133_2031442_-	hypothetical protein	NA	NA	NA	NA
WP_156499153.1\|2031450_2031630_-	hypothetical protein	NA	NA	NA	NA
WP_066394446.1\|2031680_2032493_-	hypothetical protein	A0A0A7AQF5	Bacillus_phage	7.8e-94	63.7
WP_066394448.1\|2032566_2033178_-	DUF4355 domain-containing protein	A0A2H4J4P4	uncultured_Caudovirales_phage	1.5e-36	48.2
WP_066394450.1\|2033268_2034150_-	hypothetical protein	A0A2P1JTW9	Anoxybacillus_phage	7.8e-07	23.6
WP_066394452.1\|2034136_2035414_-\|portal	phage portal protein	A0A1V0DZW8	Clostridioides_phage	2.3e-60	34.2
WP_156499154.1\|2035429_2037073_-	hypothetical protein	A0A1V0DZW7	Clostridioides_phage	4.1e-102	38.5
WP_066394454.1\|2037291_2037843_-\|integrase	tyrosine-type recombinase/integrase	A0A1B1P746	Bacillus_phage	1.8e-30	44.4
2041853:2041868	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage