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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP050951 Pseudomonas putida strain JQ581 chromosome, complete genome 4 crisprs DEDDh,RT,cas3,WYL,csa3,DinG,PD-DExK 0 1 8 0

Results visualization

1. NZ_CP050951
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050951_1 1093179-1093399 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050951_2 1111617-1111699 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050951_3 4490773-4490850 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050951_4 6343515-6343609 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP050951_3 3.1|4490797|30|NZ_CP050951|CRISPRCasFinder 4490797-4490826 30 NZ_CP012185 Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence 275392-275421 7 0.767
NZ_CP050951_3 3.1|4490797|30|NZ_CP050951|CRISPRCasFinder 4490797-4490826 30 NZ_CP012182 Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence 198763-198792 7 0.767

1. spacer 3.1|4490797|30|NZ_CP050951|CRISPRCasFinder matches to NZ_CP012185 (Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence) position: , mismatch: 7, identity: 0.767

cagctcccacagatactgcacaaggctcat	CRISPR spacer
ccgctcccacagatactgcagaaacccgag	Protospacer
* ****************** **. *. * 

2. spacer 3.1|4490797|30|NZ_CP050951|CRISPRCasFinder matches to NZ_CP012182 (Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence) position: , mismatch: 7, identity: 0.767

cagctcccacagatactgcacaaggctcat	CRISPR spacer
ccgctcccacagatactgcagaaacccgag	Protospacer
* ****************** **. *. * 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 344802 : 455563 110 Pseudomonas_virus(38.1%) protease,capsid,holin,portal,tail,head,plate,terminase NA
DBSCAN-SWA_2 1387997 : 1396445 8 Clostridium_phage(16.67%) NA NA
DBSCAN-SWA_3 2239873 : 2285324 40 uncultured_Caudovirales_phage(33.33%) integrase,coat,tRNA attL 2233694:2233710|attR 2279956:2279972
DBSCAN-SWA_4 2979690 : 2984751 7 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_5 4074584 : 4086085 15 Pseudomonas_phage(37.5%) NA NA
DBSCAN-SWA_6 4090356 : 4135885 71 Pseudomonas_phage(58.49%) head,integrase attL 4112551:4112566|attR 4142557:4142572
DBSCAN-SWA_7 4467003 : 4476273 11 uncultured_Caudovirales_phage(75.0%) tRNA NA
DBSCAN-SWA_8 5202977 : 5265541 43 Leptospira_phage(57.14%) transposase,integrase attL 5218336:5218351|attR 5271811:5271826
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage