CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015437	Anoxybacillus sp. B7M1 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	1	4
NZ_CP015436	Anoxybacillus sp. B7M1 chromosome, complete genome	13 crisprs	DEDDh,csa3,cas14j,DinG,cas3,WYL,cas8b1,cas7b,cas5,cas4,cas1,cas2,cas6	2	17	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015436_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015436_1

533823-534121

Orphan

Consensus_repeat	Method
GTTTTTATCTTACCTATGAGGGATTGAAGC	PILER-CR
GTTTTTATCTTACCTATGAGGGATTGAAGC	CRISPRCasFinder
GTTTTTATCTTACCTATGAGGGATTGAAGC	CRT

4 spacers

The CRISPR arrays of NZ_CP015436_1

>merge|NZ_CP015436|1|533823-534121|PILER-CR,CRISPRCasFinder,CRT
GTTTTTATCTTACCTATGAGGGATTGAAGCGCGTCTTCGGGATATACGGTACTTTCCGCTTTGATTTCGTTTTTATCTTACCTATGAGGGATTGAAGCTCAAAGGCGATGATGAAGGAATTTGGCGGCGTATTCGCGTTTTTATCTTACCTATGAGGGATTGAAGCAGGGGGTCTACACGTATGGCAACAAACCAAACACTGTTTTTATCTTACCTATGAGGGATTGAAGCTTCCTCCTCCAAATAAAAAAGCACCCGATCACTCGGATGTTTTTATCTTACCTATGAGGGATTGAAGC

>NZ_CP015436|1|1|533823-534121|PILER-CR
GTTTTTATCTTACCTATGAGGGATTGAAGC	GCGTCTTCGGGATATACGGTACTTTCCGCTTTGATTTC
GTTTTTATCTTACCTATGAGGGATTGAAGC	TCAAAGGCGATGATGAAGGAATTTGGCGGCGTATTCGC
GTTTTTATCTTACCTATGAGGGATTGAAGC	AGGGGGTCTACACGTATGGCAACAAACCAAACACT
GTTTTTATCTTACCTATGAGGGATTGAAGC	TTCCTCCTCCAAATAAAAAAGCACCCGATCACTCGGAT
GTTTTTATCTTACCTATGAGGGATTGAAGC

>NZ_CP015436|1|1|533823-534121|CRISPRCasFinder
GTTTTTATCTTACCTATGAGGGATTGAAGC	GCGTCTTCGGGATATACGGTACTTTCCGCTTTGATTTC
GTTTTTATCTTACCTATGAGGGATTGAAGC	TCAAAGGCGATGATGAAGGAATTTGGCGGCGTATTCGC
GTTTTTATCTTACCTATGAGGGATTGAAGC	AGGGGGTCTACACGTATGGCAACAAACCAAACACT
GTTTTTATCTTACCTATGAGGGATTGAAGC	TTCCTCCTCCAAATAAAAAAGCACCCGATCACTCGGAT
GTTTTTATCTTACCTATGAGGGATTGAAGC

>NZ_CP015436|1|1|533823-534121|CRT
GTTTTTATCTTACCTATGAGGGATTGAAGC	GCGTCTTCGGGATATACGGTACTTTCCGCTTTGATTTC
GTTTTTATCTTACCTATGAGGGATTGAAGC	TCAAAGGCGATGATGAAGGAATTTGGCGGCGTATTCGC
GTTTTTATCTTACCTATGAGGGATTGAAGC	AGGGGGTCTACACGTATGGCAACAAACCAAACACT
GTTTTTATCTTACCTATGAGGGATTGAAGC	TTCCTCCTCCAAATAAAAAAGCACCCGATCACTCGGAT
GTTTTTATCTTACCTATGAGGGATTGAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015436.1\|WP_044745291.1\|526800_527208_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133380
NZ_CP015436.1\|WP_052661011.1\|530191_530980_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_CP015436.1\|WP_044745281.1\|537325_537904_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044745282.1\|534916_535294_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044745274.1\|544075_544510_+\|sporulation-inhibitor-of-replication-protein-SirA	unknown	unknown	gnl\|CDD\|371220
NZ_CP015436.1\|WP_044745279.1\|539754_540378_-\|transcriptional-repressor-LexA	unknown	unknown	gnl\|CDD\|234688
NZ_CP015436.1\|WP_044745276.1\|541560_541791_+\|DUF896-domain-containing-protein	unknown	unknown	gnl\|CDD\|368690
NZ_CP015436.1\|WP_044745283.1\|534295_534667_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044745285.1\|533159_533438_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224619
NZ_CP015436.1\|WP_044745284.1\|533492_533753_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|212030
NZ_CP015436.1\|WP_044745275.1\|541914_543921_+\|transketolase	unknown	unknown	gnl\|CDD\|223100
NZ_CP015436.1\|WP_044745292.1\|525454_526723_+\|methionine-gamma-lyase-family-protein	unknown	unknown	gnl\|CDD\|311036
NZ_CP015436.1\|WP_044745287.1\|531421_531865_+\|ASCH-domain-containing-protein	unknown	unknown	gnl\|CDD\|119345
NZ_CP015436.1\|WP_044745313.1\|532060_532414_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044745278.1\|540526_540826_+\|cell-division-suppressor-protein-YneA	unknown	unknown	gnl\|CDD\|184523
NZ_CP015436.1\|WP_044745290.1\|527256_528591_+\|type-I-glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|273198
NZ_CP015436.1\|WP_139788152.1\|538308_538716_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_066329397.1\|532596_533088_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044745277.1\|540842_541493_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|214861
NZ_CP015436.1\|WP_044745289.1\|528763_529198_-\|HIT-domain-containing-protein	unknown	unknown	gnl\|CDD\|238608

Protein	Function_ID	Function_description	E-value
NZ_CP015436.1\|WP_044745291.1\|526800_527208_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133380	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	1.48778e-25
NZ_CP015436.1\|WP_052661011.1\|530191_530980_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	2.02449e-35
NZ_CP015436.1\|WP_044745274.1\|544075_544510_+\|sporulation-inhibitor-of-replication-protein-SirA	gnl\|CDD\|371220	pfam10747, SirA, Sporulation inhibitor of replication protein SirA. This entry represents the Sporulation inhibitor of replication (sirA) family of proteins from Bacillus sp. Induction of sporulation in rapidly growing cells inhibits replication; this is thought to be through the action of SirA protein and independent of phosphorylated Spo0A; however SirA protein synthesis is induced by Spo0A.	6.73754e-24
NZ_CP015436.1\|WP_044745279.1\|539754_540378_-\|transcriptional-repressor-LexA	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	5.89144e-119
NZ_CP015436.1\|WP_044745276.1\|541560_541791_+\|DUF896-domain-containing-protein	gnl\|CDD\|368690	pfam05979, DUF896, Bacterial protein of unknown function (DUF896). In B. subtilis, one small SOS response operon under the control of LexA, the yneA operon, is comprised of three genes: yneA, yneB, and ynzC. This family consists of several short, hypothetical bacterial proteins of unknown function. These proteins are mainly found in gram-positive firmicutes. Structures show that the N-terminus is composed of two alpha helices forming a helix-loop-helix motif. The structure of ynzC from B. subtilis forms a trimeric complex. Structural modelling suggests this domain may bind nucleic acids. This family is also known as UPF0291.	1.48988e-28
NZ_CP015436.1\|WP_044745285.1\|533159_533438_+\|hypothetical-protein	gnl\|CDD\|224619	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].	1.31092e-29
NZ_CP015436.1\|WP_044745284.1\|533492_533753_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|212030	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.	4.58842e-16
NZ_CP015436.1\|WP_044745275.1\|541914_543921_+\|transketolase	gnl\|CDD\|223100	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism].	0
NZ_CP015436.1\|WP_044745292.1\|525454_526723_+\|methionine-gamma-lyase-family-protein	gnl\|CDD\|311036	pfam06838, Met_gamma_lyase, Methionine gamma-lyase. This is a putative pyridoxal 5'-phosphate-dependent methionine gamma-lyase enzyme involved in methionine catabolism.	0
NZ_CP015436.1\|WP_044745287.1\|531421_531865_+\|ASCH-domain-containing-protein	gnl\|CDD\|119345	cd06553, ASCH_Ef3133_like, ASC-1 homology domain, subfamily similar to Enterococcus faecalis Ef3133. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.	1.49833e-59
NZ_CP015436.1\|WP_044745278.1\|540526_540826_+\|cell-division-suppressor-protein-YneA	gnl\|CDD\|184523	PRK14125, PRK14125, cell division suppressor protein YneA; Provisional.	2.78903e-38
NZ_CP015436.1\|WP_044745290.1\|527256_528591_+\|type-I-glutamate--ammonia-ligase	gnl\|CDD\|273198	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation. [Amino acid biosynthesis, Glutamate family].	0
NZ_CP015436.1\|WP_044745277.1\|540842_541493_+\|recombinase-family-protein	gnl\|CDD\|214861	smart00857, Resolvase, Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.	6.63628e-31
NZ_CP015436.1\|WP_044745289.1\|528763_529198_-\|HIT-domain-containing-protein	gnl\|CDD\|238608	cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.	1.28822e-33

>NZ_CP015436.1|WP_044745284.1|533492_533753_+|LysM-peptidoglycan-binding-domain-containing-protein
MPVKTEKAEYYVVKKDDTLTKIAKKYGTTVQQLVQLNKVKNPDLILIGQKLRVKCRRPPIVQKSRGIDDIFLLVNNPAMVKERRGC
>NZ_CP015436.1|WP_044745285.1|533159_533438_+|hypothetical-protein
MEFIQEIASYAQRIQEKYNILASLVIAQACLESKFGQSGLAQKGKNLFGIKGTYNGQSITMKTAEYQGGKAYQTDAAFWKKTWRSSIQYSVF
>NZ_CP015436.1|WP_066329397.1|532596_533088_+|hypothetical-protein
MRKLFVVFGLLLIVVLGSGFFVLNKTPAKNTESEPKSQMEAIKPEVLQRGVDPNTYPKYESNFNLYFAHLNASIFVDKSKVNNGGKPLSAEDYKSILNEMKKNLSEIKYDNNGEKKAELDRAIKLVDQAIQSKAKKGDPIFNEIHQTIHDLDVYFNTTHFVDE
>NZ_CP015436.1|WP_044745313.1|532060_532414_+|hypothetical-protein
MEPPKLNFSDVALTNPNLASEFYKRLIEMINDFEGDLDEEHEVGIRLVSFGQTLQFHIESIGYCNPSLITFQGRLQNGARVELIQHVSQINFLLMALPKMDESGPPRRIGFNLDENE
>NZ_CP015436.1|WP_044745287.1|531421_531865_+|ASCH-domain-containing-protein
MNNRVQQFWNDFCIATHQEGIEYKDAFQFGASADWLADLVVRGKKTATTSGFVFYELEKEAIPKVGEYYIVLNGQEEPVAVIQIQSVEVVPMNEVTEEFALAEGEGDYRSWWNAHEKFFTKSLKEYDMEFSPTMLVVCERFEKVYPK
>NZ_CP015436.1|WP_052661011.1|530191_530980_+|M23-family-metallopeptidase
MKKAFFKKILALSLVSILGLTLFSPYERPAKADDFTCQPYKMPTQGTISSYYGWRNGSFHHGIDIAKSGDVPVYAAYAGIVSRAYYSSSYGNVVFIKHRGGTAETVYAHLKSFSVKAGDVVSPGQQIGYMGDTGDADGQHLHFEIHNPEWNSSKSNSTDPIPLLPDETTSPICWDGDLMKKGQIGRITVLKPINLWKRDANDKLTFVRVLNPGEVYRVYGYDDLYGGQYNVGSDHWITKMDGYIKYETPSKWRLDELKRIYP
>NZ_CP015436.1|WP_044745289.1|528763_529198_-|HIT-domain-containing-protein
MSKMKKCVFCEIVNGTSPCYEVYKDDYVTAFLDINPVSIGHTLIVTNKHIERLDDIKDNQIANALMNSLIIVSKKLIKSSICEDFTVLQDNGYWAQQDIKHIHFHIIPRHKDEKIVLKLETDFVAAENKNLLKTWEKIKLHERL
>NZ_CP015436.1|WP_044745290.1|527256_528591_+|type-I-glutamate--ammonia-ligase
MAKYTKEDIIRIVQEENVKYIRLQFTDILGTIKNVEIPISQLQKALDNKIMFDGSSIEGFVRIEESDMYLYPDLDTFVIFPWTAEKGKVARFICDIYNPDGTPFEGCPRYNLKRMLKEMEALGFTAFNLGPEPEFFLFKLDNKGNPTLELNDNGGYFDLAPTDLGENCRRDIVLELEEMGFEIEASHHEVAPGQHEIDFKYANAVKACDDIQTFKLVVKTVARKHGLHATFMPKPLFGVNGSGMHCNLSLFKHNENAFFDPNGDLQLSEVARQFIAGVLKHAPNFTAVTNPTVNSYKRLVPGYEAPCYVAWSARNRSPLIRIPASRGMSTRIEVRSVDPAANPYLAMAVLLAAGLDGIKNKLTPPDPVDRNIYIMTKEERLEEGIVDLPSTLAEALQNLKSDEVMIYALGKHLFEHFVEAKEIEWDMFRTQVHPWERDQYMALY
>NZ_CP015436.1|WP_044745291.1|526800_527208_+|MerR-family-transcriptional-regulator
MSSNIRRSMPLFPIGIVMQLTELSARQIRYYEEHGLVSPARTEGNRRLFSFNDIDRLLEIKDLIDQGVNLAGIKQIFAARQSEANREPAGEKVEKVVKQQLSDEELRKMLRAELMQAGRFNRASLRQGDIARFFH
>NZ_CP015436.1|WP_044745292.1|525454_526723_+|methionine-gamma-lyase-family-protein
MFQHLKYGKEIAVLVQEVEERIAPMHKEIEQRIDYNQYRVLESFRRHQVSDAHFIPTTGYGYDDIGRDTLEKVYADVFGGEAGLVRPHIISGTHAISIALFGILRPGDELLYITGKPYDTLEEIVGIRGDGSGSLKEFHIRYRSVPLTAEGKIDVEAVKNAIHERTKMIGIQRSKGYDPRPSFTIAEIEEMIRLVRSIKRDVVVFVDNCYGEFVEEREPCHVGADLIAGSLIKNPGGGLAKTGGYLVGKKEYIEMCSYRMTSPGIGAEAGASLYSLQEMYQGFFLAPHIVGQALKGAIFTAAMLERVGMNTYPAWDAKRTDLIQSVQFDDPKKMVAFCQAIQFASPINSHFMPYPNYMPGYEDDVIMAAGTFVQGASIELTADGPLRPPYVAYVQGGLTYSHVKIAICTALDHLIEKGLISL
>NZ_CP015436.1|WP_044745283.1|534295_534667_+|hypothetical-protein
MKKFILAFFTLCLSLVVVNTTEAATPIGENSSIFIENLKKEHPDWVINPVTQEEVSEIRKEMATTNSITGSAPPVTALYIDQVGWDLETTTPQIQYINNELTSAPVRGITGVGVVEIGYGHCF
>NZ_CP015436.1|WP_044745282.1|534916_535294_+|hypothetical-protein
MLSGLNQEQMANFNSNRQLWMLRSLYGYKGHVLEEKDNLIILDGKGFRDMMENATEPINPDNVIHMSAEEERRLRSNGNSELLIQALKRAGELGILDPNGHQKSPVVQRINRNINQSLGYKAYGL
>NZ_CP015436.1|WP_044745281.1|537325_537904_+|hypothetical-protein
MNKQWKEIVGYSLSAIGTIQAAIGNTPQFHLNKNLGYQLRLVGNVLQALGSALSADGQGTASFEKMGNEIQATGNSTVITGMLVGDAWGEKIEQKLMITGLWMQALGSFVGLSDEFFDRTEDGRLENISGSLLQGIGNSLQAISGIQSLNENNSESDLIGVAGSWIQATGSVLSLIGQIQEESEEIHLNINE
>NZ_CP015436.1|WP_139788152.1|538308_538716_+|hypothetical-protein
MSAEYEIIKKRRLIYMKKIPLRVLFITIVLFFVSGGLSGAVVYHMSDAAEAAKKEYQQEINQYLSEKDMKIKNDLSNVTQSEIQRLQDETKKYLNEKLNQDYQQSLNQKTEEIKKVTDQKIEEIKNYIDQLLKNQ
>NZ_CP015436.1|WP_044745279.1|539754_540378_-|transcriptional-repressor-LexA
MTKLSKRQQQILDFIKKEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLESKGYIRRDPTKPRAIEILDPDFASFMRPSNVINVPVIGKVTAGQPITAIENVEDYFPLPERFVSAEDHVFMLEIMGDSMIEAGILDGDFVIVRQQQSANNGDIVVAMTEENEATVKRFFKEQGHIRLQPENPHMEPIIVNDVTILGKVIGVYRMIQ
>NZ_CP015436.1|WP_044745278.1|540526_540826_+|cell-division-suppressor-protein-YneA
MKVTHYLVFSCLVFMLLSGFVYASHPIQKEKYLKITVESGDTLWGIANEYRSSHQLSTKEFIEWVMNVNHLPNEKIAAGEKLVIPVLKSKAEKKLVVSK
>NZ_CP015436.1|WP_044745277.1|540842_541493_+|recombinase-family-protein
MKAIIYCRVSTNKEEQETSLQRQKEELEQLAETYRFQVVKVIEERASGYEIERDGILELLEALKEDKIEAVLIQDETRLGRGNARIALLHCIQKEGAKLYTVCHHGELQLSEADSMVLSILSIVEEYQRKIHNLKIKRGMQKAVERGYRPERNLKNIGEHAGRDRLELPIEEIIRLRRNGLTFAEIAATLRGFGYDVSKATVHRRYQEYERKSQST
>NZ_CP015436.1|WP_044745276.1|541560_541791_+|DUF896-domain-containing-protein
MISKQKIARINELAKKAKTSGLTEAEKKEQEQLRKEYLQAFRQAVTDTLHSVKIIDPNGKDVTPKKLKESQKNRLH
>NZ_CP015436.1|WP_044745275.1|541914_543921_+|transketolase
MAQTIDQLAITTIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTKFMNHNPSNPKWFNRDRFVLSAGHGSMLLYSLLHLSGYDVSMEDIKQFRQWGSKTPGHPEYGHTPGVEATTGPLGQGIAMAVGMAMAERHLATTYNRDHFEIINHYTYAICGDGDLMEGVASEAASLAGHLKLGRLIVLYDSNDISLDGELQLSFSENVAQRFEAYGWQYLRVEDGNDIEEVAKALEAARADVNRPTLIEVKTTIGYGSPNKAGTSDVHGAPLGADELKLTKEAYKWTFAEDFYVPEEVYAHFRQVVQEAGAQKEAEWNELLAAYQKAYPDLANQLKLAIDEQLPEGWEEQLPVYPEGKNIATRASSGEVLNAIAKAVPQFIGGSADLAGSNKTLIKGTGNFMPESYEGRNIWFGVREFAMGAALNGMALHGGVKVFGGTFFVFSDYLRPAIRLAALMGLPVTYVFTHDSIAVGEDGPTHEPIEQLPSLRAMPNLSLIRPADANETAAAWRLALESTDRPTALVLTRQNLPTLATTAERAYEGVKKGAYVVSEATNGEPQALLLASGSEVSLAVEAQKALASEGIYVSVISMPSWDRFEQQPEEYKEQVLPSALKKRLAIEMAASFGWERYTGDEGDILAIDRFGASAPGEQIMKEYGFTVEHVIERVKKLLHP
>NZ_CP015436.1|WP_044745274.1|544075_544510_+|sporulation-inhibitor-of-replication-protein-SirA
MTRYWIYLFRDDVVKDYYHRPEKIVELLREYQKAPFKSVCHKQVEFITERISFSRVELGIKEHFSGQVERNLERNMLMFKHDQTNEEALVIVQKRRLLLISDCYDLTNRIFQSLAMISSAFLAIDSEFSHYQWLKAELENRKFA

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Crispr_ID: NZ_CP015436_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015436_2

1303527-1303885

Orphan

Consensus_repeat	Method
GTTTCAATTCCTCATAGTTAAGATAAAAAC	CRISPRCasFinder
GTTTCAATTCCTCATAGTTAAGATAAAAAC	CRT
GTTTTTATCTTAACTATGAGGAATTGAAAC	PILER-CR

5 spacers

The CRISPR arrays of NZ_CP015436_2

>merge|NZ_CP015436|2|1303527-1303885|CRISPRCasFinder,CRT,PILER-CR
CGTTCAATTCCTTATAGTTAAGATAAAAACAAGGTGTCCATTCTCCTCTATGATGTCTGTGTTTTGTTTCAATTCCTCATAGTTAAGATAAAAACACGCGAAAAGAACGTCTGATGATCGAGCAGCTGTTGGTTTCAATTCCTCATAGTTAAGATAAAAACCTCTCCCGCTTTTCGACCAAATTCGACAAACAACCCAGTTTCAATTCCTCATAGTTAAGATAAAAACTGGGCAAGGAATTGAACGTGAAATTCGGTTGGCTGAGTTTCAATTCCTCATAGTTAAGATAAAAACGGGAGTGAGGACGATGATATCCTCACTTTTCTTGTGTTTCAATTCCTCATAGTTAAGATAAAAAC

>NZ_CP015436|2|2|1303527-1303885|CRISPRCasFinder
CGTTCAATTCCTTATAGTTAAGATAAAAAC	AAGGTGTCCATTCTCCTCTATGATGTCTGTGTTTT
GTTTCAATTCCTCATAGTTAAGATAAAAAC	ACGCGAAAAGAACGTCTGATGATCGAGCAGCTGTTG
GTTTCAATTCCTCATAGTTAAGATAAAAAC	CTCTCCCGCTTTTCGACCAAATTCGACAAACAACCCA
GTTTCAATTCCTCATAGTTAAGATAAAAAC	TGGGCAAGGAATTGAACGTGAAATTCGGTTGGCTGA
GTTTCAATTCCTCATAGTTAAGATAAAAAC	GGGAGTGAGGACGATGATATCCTCACTTTTCTTGT
GTTTCAATTCCTCATAGTTAAGATAAAAAC

>NZ_CP015436|2|2|1303527-1303885|CRT
CGTTCAATTCCTTATAGTTAAGATAAAAAC	AAGGTGTCCATTCTCCTCTATGATGTCTGTGTTTT
GTTTCAATTCCTCATAGTTAAGATAAAAAC	ACGCGAAAAGAACGTCTGATGATCGAGCAGCTGTTG
GTTTCAATTCCTCATAGTTAAGATAAAAAC	CTCTCCCGCTTTTCGACCAAATTCGACAAACAACCCA
GTTTCAATTCCTCATAGTTAAGATAAAAAC	TGGGCAAGGAATTGAACGTGAAATTCGGTTGGCTGA
GTTTCAATTCCTCATAGTTAAGATAAAAAC	GGGAGTGAGGACGATGATATCCTCACTTTTCTTGT
GTTTCAATTCCTCATAGTTAAGATAAAAAC

>NZ_CP015436|2|2|1303529-1303885|PILER-CR
TTCAATTCCTTATAGTTAAGATAAAAACAA	GGTGTCCATTCTCCTCTATGATGTCTGTGTTTTGT
TTCAATTCCTCATAGTTAAGATAAAAACAC	GCGAAAAGAACGTCTGATGATCGAGCAGCTGTTGGT
TTCAATTCCTCATAGTTAAGATAAAAACCT	CTCCCGCTTTTCGACCAAATTCGACAAACAACCCAGT
TTCAATTCCTCATAGTTAAGATAAAAACTG	GGCAAGGAATTGAACGTGAAATTCGGTTGGCTGAGT
TTCAATTCCTCATAGTTAAGATAAAAACGG	GAGTGAGGACGATGATATCCTCACTTTTCTTGTGT
TTCAATTCCTCATAGTTAAGATAAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015436.1\|WP_044746362.1\|1299265_1300231_-\|formimidoylglutamase	unknown	unknown	gnl\|CDD\|212514
NZ_CP015436.1\|WP_052661036.1\|1311587_1312547_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119321
NZ_CP015436.1\|WP_044746364.1\|1294429_1295704_-\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
NZ_CP015436.1\|WP_044746355.1\|1308101_1310171_-\|bifunctional-rhamnulose-1-phosphate-aldolase/short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|236241
NZ_CP015436.1\|WP_044746354.1\|1310476_1311526_-\|autoinducer-2-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380525
NZ_CP015436.1\|WP_044746361.1\|1300584_1301643_-\|2,3-butanediol-dehydrogenase	unknown	unknown	gnl\|CDD\|176195
NZ_CP015436.1\|WP_052661035.1\|1312564_1313545_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP015436.1\|WP_044746368.1\|1291499_1291820_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044746363.1\|1295722_1297381_-\|urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
NZ_CP015436.1\|WP_044746360.1\|1301890_1302535_+\|hemolysin-III-family-protein	unknown	unknown	gnl\|CDD\|224191
NZ_CP015436.1\|WP_044746357.1\|1305342_1306599_-\|L-rhamnose-isomerase	unknown	unknown	gnl\|CDD\|179217
NZ_CP015436.1\|WP_044746359.1\|1302638_1303466_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381383
NZ_CP015436.1\|WP_044746358.1\|1304339_1305116_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP015436.1\|WP_044746352.1\|1313541_1315107_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP015436.1\|WP_044746356.1\|1306579_1308019_-\|rhamnulokinase	unknown	unknown	gnl\|CDD\|198349
NZ_CP015436.1\|WP_044746367.1\|1291816_1292059_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044746351.1\|1315367_1316300_-\|ribokinase	unknown	unknown	gnl\|CDD\|238579
NZ_CP015436.1\|WP_044746350.1\|1316321_1317002_-\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|238244
NZ_CP015436.1\|WP_044746365.1\|1293050_1294379_-\|YjiH-family-protein	unknown	unknown	gnl\|CDD\|225851
NZ_CP015436.1\|WP_044746366.1\|1292330_1292723_+\|large-conductance-mechanosensitive-channel-protein-MscL	unknown	unknown	gnl\|CDD\|184416

Protein	Function_ID	Function_description	E-value
NZ_CP015436.1\|WP_044746362.1\|1299265_1300231_-\|formimidoylglutamase	gnl\|CDD\|212514	cd09988, Formimidoylglutamase, Formimidoylglutamase or HutE. Formimidoylglutamase (N-formimidoyl-L-glutamate formimidoylhydrolase; formiminoglutamase; N-formiminoglutamate hydrolase; N-formimino-L-glutamate formiminohydrolase; HutE; EC 3.5.3.8) is a metalloenzyme that catalyzes hydrolysis of N-formimidoyl-L-glutamate to L-glutamate and formamide. This enzyme is involved in histidine degradation, requiring Mn as a cofactor while glutathione may be required for maximal activity. In Pseudomonas PAO1, mutation studies show that histidine degradation proceeds via a 'four-step' pathway if the 'five-step' route is absent and vice versa; in the four-step pathway, formiminoglutaminase (HutE, EC 3.5.3.8) directly converts formiminoglutamate (FIGLU) to L-glutamate and formamide in a single step. Formiminoglutamase has traditionally also been referred to as HutG; however, formiminoglutamase is structurally and mechanistically unrelated to N-formyl-glutamate deformylase (also called HutG). Phylogenetic analysis has suggested that HutE was acquired by horizontal gene transfer from a Ralstonia-like ancestor.	2.99905e-114
NZ_CP015436.1\|WP_052661036.1\|1311587_1312547_-\|ABC-transporter-permease	gnl\|CDD\|119321	cd06579, TM_PBP1_transp_AraH_like, Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.	4.38946e-71
NZ_CP015436.1\|WP_044746364.1\|1294429_1295704_-\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
NZ_CP015436.1\|WP_044746354.1\|1310476_1311526_-\|autoinducer-2-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380525	cd06302, PBP1_LsrB_Quorum_Sensing-like, periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type 1 periplasmic binding protein superfamily. LsrB, which is part of the ABC transporter complex LsrABCD, binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding protein in interspecies signaling.	9.93187e-128
NZ_CP015436.1\|WP_044746361.1\|1300584_1301643_-\|2,3-butanediol-dehydrogenase	gnl\|CDD\|176195	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.	0
NZ_CP015436.1\|WP_052661035.1\|1312564_1313545_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	6.19231e-73
NZ_CP015436.1\|WP_044746365.1\|1293050_1294379_-\|YjiH-family-protein	gnl\|CDD\|225851	COG3314, COG3314, Uncharacterized protein conserved in bacteria [Function unknown].	4.53454e-122
NZ_CP015436.1\|WP_044746363.1\|1295722_1297381_-\|urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
NZ_CP015436.1\|WP_044746360.1\|1301890_1302535_+\|hemolysin-III-family-protein	gnl\|CDD\|224191	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only].	6.03435e-61
NZ_CP015436.1\|WP_044746352.1\|1313541_1315107_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP015436.1\|WP_044746359.1\|1302638_1303466_+\|aldo/keto-reductase	gnl\|CDD\|381383	cd19157, AKR_AKR5G1-3, AKR5G family of aldo-keto reductase (AKR). Bacillus subtilis glyoxal reductase (GR), uncharacterized oxidoreductase YtbE, and Bacillus aryabhattai aldo-keto reductase are founding members of aldo-keto reductase family 5 member G1-3 (AKR5G1-3), respectively. GR (YvgN, EC 1.1.1.283), also called methylglyoxal reductase, reduces glyoxal and methylglyoxal (2-oxopropanal). It is not involved in vitamin B6 biosynthesis.	1.17109e-174
NZ_CP015436.1\|WP_044746358.1\|1304339_1305116_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	4.54637e-94
NZ_CP015436.1\|WP_044746356.1\|1306579_1308019_-\|rhamnulokinase	gnl\|CDD\|198349	cd07771, FGGY_RhuK, L-rhamnulose kinases; a subfamily of the FGGY family of carbohydrate kinases. This subfamily is predominantly composed of bacterial L-rhamnulose kinases (RhuK, also known as rhamnulokinase; EC 2.7.1.5), which are encoded by the rhaB gene and catalyze the ATP-dependent phosphorylation of L-rhamnulose to produce L-rhamnulose-1-phosphate and ADP. Some uncharacterized homologous sequences are also included in this subfamily. The prototypical member of this subfamily is Escherichia coli RhuK, which exists as a monomer composed of two large domains. The ATP binding site is located in the cleft between the two domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of divalent Mg2+ or Mn2+ is required for catalysis. Although an intramolecular disulfide bridge is present in Rhuk, disulfide formation is not important to the regulation of RhuK enzymatic activity. Members of this subfamily belong to the FGGY family of carbohydrate kinases.	0
NZ_CP015436.1\|WP_044746357.1\|1305342_1306599_-\|L-rhamnose-isomerase	gnl\|CDD\|179217	PRK01076, PRK01076, L-rhamnose isomerase; Provisional.	0
NZ_CP015436.1\|WP_044746351.1\|1315367_1316300_-\|ribokinase	gnl\|CDD\|238579	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.	1.12248e-107
NZ_CP015436.1\|WP_044746350.1\|1316321_1317002_-\|ribulose-phosphate-3-epimerase	gnl\|CDD\|238244	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.	7.94497e-103
NZ_CP015436.1\|WP_044746355.1\|1308101_1310171_-\|bifunctional-rhamnulose-1-phosphate-aldolase/short-chain-dehydrogenase	gnl\|CDD\|236241	PRK08324, PRK08324, bifunctional aldolase/short-chain dehydrogenase.	0
NZ_CP015436.1\|WP_044746366.1\|1292330_1292723_+\|large-conductance-mechanosensitive-channel-protein-MscL	gnl\|CDD\|184416	PRK13955, mscL, large conductance mechanosensitive channel protein MscL.	4.55883e-65

>NZ_CP015436.1|WP_044746359.1|1302638_1303466_+|aldo/keto-reductase
MKSITDSALLSNGVKMPWLGLGVYKVSNGDEVVKAVRTALEIGYRHIDTASFYENEEGVGQAIKESGIPREQLFITTKVWNTEQGYEETLQAFKRSANKLGLEYVDLYLVHWPVKETYKETYRALEKLYKEGFVRAIGVSNFHIHHLENLMTDCEIKPMVNQVEYHPRLTQQELHAFCRKHQIQLEAWSPLMRGVLLEEPILVDIANKYGKSPAQVILRWDLQNQVVTIPKSVTPQRIKENAEIFDFELTAEEMERIHSLNQNKRIGKNPNDFDL
>NZ_CP015436.1|WP_044746360.1|1301890_1302535_+|hemolysin-III-family-protein
MASTHTFTKTEEFVHAITHGIGAILSIAGLVILVVMSAIYGNEWHVISFSLFGSTMFILYLSSTISHGLPEGKGKQLFQIFDHSSIYFFIAGTYTPFLFLAVKGTTGWILFGIVWGLAVAGTVFKCFFVTRFLYTSTLLYIVMGWLIIFAWKPLAANLSSEGLLFLVSGGVLYTIGAIFYVWRGVKFHHAIWHLFVLAGSIAHFFAVLCLLPTI
>NZ_CP015436.1|WP_044746361.1|1300584_1301643_-|2,3-butanediol-dehydrogenase
MKAARWYQARDIRVEEVPEPKAEAGQVKIKVAYAGICGSDLHEYLAGPIFVPVKEPHPLSKDKAPIIMGHEYAGEVVEVGEGVGRIQVGDRVCVEPIYSCGECPSCRKGHYNVCEKLGFVGLSGGYGGFAEYSVVPAHMVHKIPDHMSWEQAALVEPTAVAVHAVRQSGLQIGDTVAVFGAGPIGLLVIQAARAAGASNIIAVEVSPERQELARKVGTDLVIHPLEQEAVAEIFAYTEGLGADVSFEVAGVEATLNMAVAATRPEGNIVNVSIWEKPASLPVNHLVLTERKMTSIIAYRNIFPQVIRLIANGQINASDLVTSYIRLDEIVPKGFEALTTQKSQIKILVQPSI
>NZ_CP015436.1|WP_044746362.1|1299265_1300231_-|formimidoylglutamase
MYHQPQSSTWTGRIDSRTDPLSFRFHQRVQLKNIDELEKMTGGKAFALLGFQCDEGVKRNKGRVGAYYGPVEVKKALAHLPWHFSDKTFVFDVGNVGCDDHHLEQSQQQLGEAVQHLIQHHITPIIIGGGHETAYGHYLGVRQAAGTEKSIGIINIDAHFDMRPYDQGTSSGTMFRQILDTDRQAGYLCIGIQPFGNTATLFETAQRYGCVYVLEEQVTWERIKEVYTTIEQFIEKYDVVMLTLCMDAISASAAPGVSAPSPFGLDPKIARALIRHIVAHPKTASFDISEVNPTVDENRKTITLAAYLCAEALAGFERRKV
>NZ_CP015436.1|WP_044746363.1|1295722_1297381_-|urocanate-hydratase
MTGTKRLLETYTSSTLHAKGWIQEAALRMLTNNLNPDVAERPQDLVVYGGIGKAARNWECYDMIVETLLNLENDETLLIQSGKPVAVFKTHKDAPRVLIANSNLVPAWANWDCFHELDKKGLIMYGQMTAGSWIYIGSQGIIQGTYETFAELARQHYQGTLQGTITVTAGLGGMGGAQPLAVTLNGGVCIAIEMDRSRIQRRLDTKYLDTMTENLAEAIDMAKQAKEQGRALSIGLLGNVAELLPEMVKKEFIPEILTDQTSAHDPLNGYFPAGIKIEEAIELRNRDPQQYVKRAKQTIAEHVKAMLVMQKKGAVTFDYGNNIRQIAKDEGVENAFDFPGFVPAYIRPQFCEGKGPFRWVALSGDPEDIYKTDEVILREFSDNKHLCNWIRMAREKIQFQGLPARICWLGYGERKKFGKIINDMVAKGDLKAPIVIGRDHLDSGSVASPNRETEGMKDGSDAIADWPILNALINAVGGASWVSVHHGGGVGMGYSIHAGMVIVADGTREAEKRLERVLTTDPGMGVVRHADAGYELAIRTAKEKGIHMPMLR
>NZ_CP015436.1|WP_044746364.1|1294429_1295704_-|imidazolonepropionase
MCPLFVRNAKQLITLKGSSTAPLKKEKMRELHIIENGSVWIEEGRIVAVGTDQELCKQFQAKIDKAEIVDATGKTVMPGFVDPHTHLVYAGSREKEFAMRLDGMTYMEIMNAGGGIYATTRATRKASEEELFIEGKKRLDQFLLHGVTTIEAKSGYGLNLKHELKQLVVAKKLHAAHPIDIISTFMGAHAIPVEFKDRPNQFVYTIVEEMIPEVKKWELAEFNDVFCDRGVFTPEQAKIILEAGKAYGLTPKIHADEIEPYGCAELAAEIGAISADHLLCVSDEGIKRMAEKGVIAVLLPGTAFFLMKEAANGRKMIDAGVPIALATDYNPGSSPTVSLPLIMLLGCLHMGMTPEEVIVAVTINAAHSIRRGHEIGSIEAGKKADMTIFNVSNYIQLIYYYGMNHAETVIKNGQVVVAKGQLCY
>NZ_CP015436.1|WP_044746365.1|1293050_1294379_-|YjiH-family-protein
MKVDTDKQSFLSLQPPLGHAWKFFVYSAIGIFMFFIPIKIGENSSIMLDHMVSWIRAEFPSLVRYYAFMVILLGAVYPFINKTWNKNAVTIIFSVLKVIGLLVAALLLFKIGPSWLFREDMGPFLYDKLVISVGLLVPIGSIFLALLVGYGLLEFIGVWMQPVMRPIWKTPGRSAIDAVASFVGSYSIGLLITNKVFKEGKYTIKEAAIIATGFSTVSVTFMVVVAKTLGLMDIWNTYFWITFFVTFLVTAITVRIWPLSRMSDEYYGGKGQPEEKVKGNYMKKAWSEAMEAVQHSKGLIENVWDNLKDGFVMTMSILPSIMSVGLLGLLLAEYTPLFDIIGYLFYPVTALLQIPEPLLAAKASAIEIAEMFLPALLVTEAPLITKFIIAVVSISAILFFSAVIPCILSTEIPLSIPKLLIIWVERTVLTLVIVTPIAYWLL
>NZ_CP015436.1|WP_044746366.1|1292330_1292723_+|large-conductance-mechanosensitive-channel-protein-MscL
MWKEFKEFAMRGNIIDLAIGVIIGGAFNKIVSSLVNDMIMPLLGLLLGGLDFSSLSFQFGKANIKYGMFIQTIVDFLIVAFSIFLLVKGLNKLHQRKKQEKIEEQPVLSKQEELLSEIRDLLKQQQRERG
>NZ_CP015436.1|WP_044746367.1|1291816_1292059_-|hypothetical-protein
MKNKKWLALLFVFLLGACSDKEPSGPEARAGGSKTRETVVDSEQTNQQDVQNGHITNHNENTQTNPSLTPDELKSSFSLA
>NZ_CP015436.1|WP_044746368.1|1291499_1291820_-|hypothetical-protein
MTKEAVDALLKVQAVRVVDSEGSGVIMRRYDIGFPKTYQFQATKGSSGIELDEIDVDGVKTYNGIVIFATYDNKNEAQRYSIVYLEPGKIYHYIHNPDYEKTEMIQ
>NZ_CP015436.1|WP_044746358.1|1304339_1305116_+|DeoR/GlpR-transcriptional-regulator
MLAAERQQKIVEIVNERLSIRVSELSKIFSVTEETIRRDLEKLEKEHKLKRSHGGAISIREETEIDVSEREITNVEEKKAIAQEAIKHIESGDRIILDASTTAWYLAKTLPDIPLTVITNSIKVAVELSKKGKIQVISTGGMLLPKSLSYVGPLAERSLDAYHVDKVFLSCKGVHLANGLSESNEWQALLKKRMMEIADKIILMADSSKFGIRTFVHMASLADMDHIITDDQIDHETKWELEEQNLSFTVVAPLSLKA
>NZ_CP015436.1|WP_044746357.1|1305342_1306599_-|L-rhamnose-isomerase
MVKESFDRAKQQYEKWGIHVDEVLKQLQRIAISIHCWQGDDVSGFEVNRRGRELSGGIDVTGHYPGKAGTPEELRQDLEKALSLIPGTHRVNLHAMYAETNGEMVDRDELEPQHFDNWVYWAKERGLGLDFNPTLFSHEKLTDGLTLSHPNEEIRRFWIRHCVVCRKIGEYFGKCLGTPCLTNIWIPDGYKDIPSDRLTPRQRLKDSLDQIFKETIDEAYNIDAVESKLFGIGSESYVVGSHEFYLGYALQNHKVCLLDTGHFHPTEAVSDKISAMLLYFDKLALHVSRPVRWDSDHVVIFDDELKEIALEIVRNQALDRVMLGLDFFDASINRIAAWVMGTRNMIKALLYAMLLPHDYLKQLQEKGNFTERLALMEEFKTYPFGVIWDAYCDDRGVPVREEWLQEVKRYEEEVLANR
>NZ_CP015436.1|WP_044746356.1|1306579_1308019_-|rhamnulokinase
MEKCCLAVDIGASNGKIVAGYLLEEKLIIEEIYRFENQLVQKGDYICWDIDQLFQEIKKGLHICKGQGMNPKSIGIDTWAVDFVLLDEDDRRLTEAVAYRDSRTNGMMEQVFQKISKEELYGRTGIQFQSFNTIYQLYALKQTAPEILERTKTFLMIPDYFHYLLTGKKVNEYTNATTTQLVNAATKTWDKELLEKLGIPDSIFQTIHTPGTVLGKLRQELAEEVGLEMKVIMPATHDTASAVIAVPELHDTIYISSGTWSLIGVELQSPLCTEHALRYNFTNEGGFNYRFRFLKNIMGLWMLQEIKRVYRHQYSFEQLVQLAKIEKDFRAIVHVDDTRFLKPINMVDEIQKCCLETNQPVPQTPGQIAKCVFDSLVVSYQHAVAKIEEVIGIKFKQINIIGGGCQNELLNQMIAHATGKEVYAGPVEATAIGNIVVQLMALGDISTLNEARTMIARSFPLKKFVPYREGERKYGERKL
>NZ_CP015436.1|WP_044746355.1|1308101_1310171_-|bifunctional-rhamnulose-1-phosphate-aldolase/short-chain-dehydrogenase
MVGNLWNNSEFTVLQTELEKLVYRSNLLGADRSVANWGGGNTSMKAITKDFRGREMEVMWVKGSGSDLATMKAQHFTGLRLEDIRPLMEREEMSDEEMVEYLSHCMINSKHPRPSIETLLHAFLPFKHIDHTHPDAIISICCADNGKKIAEEIYGDRFVWVPYVRPGFTLSKMIAEGVRRNANAELVLMEKHGLVTWGETSKECYEKTISIINEAEQYIQRSVNEATVFGGPKHKALTEDERKAILAQVMPIIRRLVSHSNRMIVSYDDTDQVLQFVNSYEAPVLSQIGAACPDHLVHTKRVPLYIDWDPQTGNVQELIEKIKEGISSFKKEYEAYFERNRTEGDKMFEPVPRVILIPGIGMVNTGKSLAMAKVSGALYHRAIAVMKGATSLGRFVSLNEQESYQVEYWPLELYKLTLAPPEAEFSRKVAFVTGGAGGIGSETCRRFALEGAHVVVADLNIEGAARVATEINKEHGEGRAIAVRMDVTKEEEVRLAFEEAARTYGGIDIIVNNAGLATSSPFDETTLQEWNLNINVLATGYFLVAREAFRQMKKQGLGGSMVFVGSKNSVYAGKNAAAYSAAKALEMHLARCIAAEGGAYGIRVNSVLPDAVLQGSAIWNSAWREERARAYGIEPDQLEDYYRKRTALLVNIYPKDIADAILFFASSKAEKTTGCLLTVDGGVPAAFPR
>NZ_CP015436.1|WP_044746354.1|1310476_1311526_-|autoinducer-2-ABC-transporter-substrate-binding-protein
MKKLKFFVSLLFLFGLLVGCVSQNSVTSNKSANNGQASETKNDANGKLKIAVVPKLVGIPYFNAAEKGALQAGKDLGVDVIYTGPTEADAAQQVKIIEDLISQKVDVIAVAPNDPASLTPVLKKAKEQGIKVIDWDTPADQSIVELSIHQIDDEIYGRHIAKTLIEKIGTDKGEIAILTGGLSAANLNAWIDAAKKELEENYPGIKLVTDKIATDEKQQVAYQKTLDLIKSYPNLKGIMAFSTPAPLGAAQAIQEKGLQNKITVVGTALPKDSKPFLEDQSLDVAILWEPNKLGYLTVALAKDLVEGKKPQDGQNIDNVGKIEVKEDGKTVIMGPPTDFTAENAGNYDF
>NZ_CP015436.1|WP_052661036.1|1311587_1312547_-|ABC-transporter-permease
MKIALSKENILGLIALALFVVMTIIAPGFLSAENINNMMFQLPEFGLLALGMMVVIITGGIDLSITYTAALSGVSIAMMQSHGYPMMISILVGILIGLACGFMNGFIVTRIGVSPILVTLGTMILFEGVILSITKGNSISGFSDWYNLIGNGYYLGLIPLSMIIFIFFAVVTSVLLGKTYWGRCVYMIGSNSVASLFSGINTSRVILKVYLYASFLAAISAIIMTSRYNTAKVDLGSSYLLQSVAAAVLGGTEIQGGYGKVIGTVYAVMIFQILSNGLNLLEVPRTIVNVIMGAILITVLVINFAKTKLGNKDRMQVTS
>NZ_CP015436.1|WP_052661035.1|1312564_1313545_-|ABC-transporter-permease
MKSIMKKEASIAVIIIILSIVLSFINPVFLTIDNILDILKGNVVLGILAMGMTLVIITGGIDVSVAAVTTAVCVVIGKLLVMVPDHIGALFLLLVIACLLGIILGGINGFLVSKIEIPAIVVTLGTMSMINGIVLYVTNGQYLNSTDFPKVFLKFSNIKILGVSILIWLFFLIAILTWFLLKHTVMGREILAIGGNKESALRVGINFNKVQIFVFAYMGFLAGIAAIAQISYTKAVDPNGLSGLELSVIAAVVLGGTNIMGGRGTVIGTILGVLLLGIIQNGLILARIDIFWQKVVVGLIILLAVSYDHIQYKRAQAQLSRIEIDS
>NZ_CP015436.1|WP_044746352.1|1313541_1315107_-|sugar-ABC-transporter-ATP-binding-protein
MSEYLLRMEHISKTFHGMKALDHVRLEVKRGEVHALIGENGAGKSTLIKILAGVYQPDFGAEFYFEGKKVEIKKPIDAVLKGISIIYQDLSLFPNLSVAENICIGKDVYNKSWKRVNWNEIKKIAQKVLNELDFQIDLYTPVEKLSIAQQQLIEIARALAFDSKLIVMDEPTASLSSSEVEKLYHIIDRLKQKGISVIFVSHKLKELFTVSDRFTVLRDGKYVGTYLKEEMDEEKLITLMVGRKVQYERSQAVNHKIGNVILEVRNLSKEGNFKDISFQLKEGEVLGITGLVGSGRTELAQAIFGVNNPYKGEVKIQGEAVFISSPEKAVKNGIAYIPENRKIQGLILEQSVINNISISILKALRTKLGLIQRKKEVDLAERYIQAIDIRPAAPERKVGQLSGGNQQKVVISKWLATNPKILIIDEPTSGIDIGAKTEIHKLLRQLASEGMGVIVISSELPEILAVSDRILVMKHGRIAGELNIQEATQENIMNLALLGASSTNHHGALSTVTQQSKGAMM
>NZ_CP015436.1|WP_044746351.1|1315367_1316300_-|ribokinase
MNNITVVGSINIDIVARTARYPTKGETIFAEKVELLPGGKGANQATVCARLGKTVQLIGMIGQDWYGDIVLKALQKNDIDTTYIKRIQDVATGCAIITVDRTAENTMLVVKGANDQLRDTDVCEAFSKIFDSKILLVQMEIPAEAVIQSMIEAKRKGMFVILDPAPAEGITVRAWEHADLIIPNRQETKELTGIDVMSVDTAYEAAKHFQLMGVKNLIIKMANKGSFVCENGKFEYIEAISVKSVDTVGAGDSYAGALACSIADGQELIRAAQFATIVSALKVTKWGAQAGIPTIEEVNEFCRQRNLTYY
>NZ_CP015436.1|WP_044746350.1|1316321_1317002_-|ribulose-phosphate-3-epimerase
MVLIGPSLMCADMGNLRDNVNRLEQAGVDYFHFDIMDGKFVPNFTMGPDVIRILRNSTNLPFDIHLMIEKPEDCLELFVESGADMISIHVEATVHLTKTLQKIRDRGLKAGVALNPSTPIANIEYVLDMVDYITVMTVNPGFSGQKFIPLMKKKIKKLKQLIAEENYHVNIQVDGNIGYHTMQEVLENGADMLVLGTSCLFNSTQSLEDAVLQIKRFIHHCQTHMR

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Crispr_ID: NZ_CP015436_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015436_3

1330218-1332035

Orphan

Consensus_repeat	Method
GTTTCAATTCCTTATAGTTAAGATACAAAC	CRISPRCasFinder
GTTTCAATTCCTTATAGTTAAGATACAAAC	CRT
GTTTGTATCTTAACTATAAGGAATTGAAAC	PILER-CR

27 spacers

The CRISPR arrays of NZ_CP015436_3

>merge|NZ_CP015436|3|1330218-1332035|CRISPRCasFinder,CRT,PILER-CR
ATCTTAATTTCTTATAGTTAAGATGAAAACATACACAGCCGATGGACTGATTGATGAACTAATCCCTTGTTTCAATTCCTTATAGTTAAGATACAAACTGGATACTAAACCGCTTGATAAATTGAAGCAAAAATGTTTCAATTCCTTATAGTTAAGATACAAACGGCGGTTATGCAAGGATATCTTTACGAGAATACGAGGTTTCAATTCCTTATAGTTAAGATACAAACAGAATTGCTGAAATACAACAATGCAGAGTCCCTAGAGTTTCAATTCCTTATAGTTAAGATACAAACGCGCTCTTGAAGTTTCACAATGACTTGTTCCTCCGGTTTCAATTCCTTATAGTTAAGATACAAACTGTTCATCAGAAGTCGGCGGACGGTCAACATATTCAGTTTCAATTCCTTATAGTTAAGATACAAACATGCATTTGCCAGACCCCGTTATTATAGTCATCCGCGGTTTCAATTCCTTATAGTTAAGATACAAACCGAAATCAACTGTTGTAGCATTTACATTGTCGACAAGTTTCAATTCCTTATAGTTAAGATACAAACTTTACAGGCCGACAATCACGTAAAACCAGTTCATGAGTTTCAATTCCTTATAGTTAAGATACAAACGATGTGAGCAGGATGGAAAATCCCCAACCTTTTGTAGTTTCAATTCCTTATAGTTAAGATACAAACAAAGAATGCAGCATAGCAGCTTGTTCATCTGAAAATTGTTTCAATTCCTTATAGTTAAGATACAAACAAAATCCAATTGTCTGGCATGGAAAGCATGTAGGCAAGGTTTCAATTCCTTATAGTTAAGATACAAACTTCCGTCTTCAAGTTGATATGCAACAATCGGCTGTGTGGTTTCAATTCCTTATAGTTAAGATACAAACAAAGCGCAAGCAAAAACGAAATCACCATCTCACCAGTTTCAATTCCTTATAGTTAAGATACAAACTATCACTTTTTCCTGGAGCGCCAAAGATGAAAGTGAATGTTTCAATTCCTTATAGTTAAGATACAAACCTAGATAAGACTTCCCATGCATCGTTTGTCCCCAGAGTTTCAATTCCTTATAGTTAAGATACAAACTTGGATAAAGCATCCACTTTTTCATTCAATTTCTTGTTTCAATTCCTTATAGTTAAGATACAAACGTAGCTGTTAGTCAAAAAAGACTAACAGTTCAGGGGTTTCAATTCCTTATAGTTAAGATACAAACTTCAATCGTACCGATGGTTTCCCATGTTTTTGCAGGTTTCAATTCCTTATAGTTAAGATACAAACATTCGGAAGAAGTCGCAAAGGCAATCTATCGTTTTCGGTTTCAATTCCTTATAGTTAAGATACAAACGGCGCTGGATTCCATTCTCTTGATAGGTTCATAGTTGTTTCAATTCCTTATAGTTAAGATACAAACGCACCTTTTCATACCGTTCTGCTTTCTCTAATCTTGTTTCAATTCCTTATAGTTAAGATACAAACAAAAAAAACAGTGCATATGCGATGGGATTCCTCCCGTTTCAATTCCTTATAGTTAAGATACAAACGGGTTCGAAAAAAACAAGGAAAGGGGTATATCATCCAGTTTCAATTCCTTATAGTTAAGATACAAACGTTTGTGTCGCGTTGCGGATGTCAGCATTCACTTTATGTTTCAATTCCTTATAGTTAAGATACAAACAACGAAGCAGGGGATCGCGATGATGTGGTTTGAGTTGTTTCAATTCCTTATAGTTAAGATACAAACAGGGGTATATCATCCATAATAAAACTGATTACCAATGTTTCAATTCCTTATAGTTAAGATACAAAC

>NZ_CP015436|3|3|1330218-1332035|CRISPRCasFinder
ATCTTAATTTCTTATAGTTAAGATGAAAAC	ATACACAGCCGATGGACTGATTGATGAACTAATCCCTT
GTTTCAATTCCTTATAGTTAAGATACAAAC	TGGATACTAAACCGCTTGATAAATTGAAGCAAAAAT
GTTTCAATTCCTTATAGTTAAGATACAAAC	GGCGGTTATGCAAGGATATCTTTACGAGAATACGAG
GTTTCAATTCCTTATAGTTAAGATACAAAC	AGAATTGCTGAAATACAACAATGCAGAGTCCCTAGA
GTTTCAATTCCTTATAGTTAAGATACAAAC	GCGCTCTTGAAGTTTCACAATGACTTGTTCCTCCG
GTTTCAATTCCTTATAGTTAAGATACAAAC	TGTTCATCAGAAGTCGGCGGACGGTCAACATATTCA
GTTTCAATTCCTTATAGTTAAGATACAAAC	ATGCATTTGCCAGACCCCGTTATTATAGTCATCCGCG
GTTTCAATTCCTTATAGTTAAGATACAAAC	CGAAATCAACTGTTGTAGCATTTACATTGTCGACAA
GTTTCAATTCCTTATAGTTAAGATACAAAC	TTTACAGGCCGACAATCACGTAAAACCAGTTCATGA
GTTTCAATTCCTTATAGTTAAGATACAAAC	GATGTGAGCAGGATGGAAAATCCCCAACCTTTTGTA
GTTTCAATTCCTTATAGTTAAGATACAAAC	AAAGAATGCAGCATAGCAGCTTGTTCATCTGAAAATT
GTTTCAATTCCTTATAGTTAAGATACAAAC	AAAATCCAATTGTCTGGCATGGAAAGCATGTAGGCAAG
GTTTCAATTCCTTATAGTTAAGATACAAAC	TTCCGTCTTCAAGTTGATATGCAACAATCGGCTGTGTG
GTTTCAATTCCTTATAGTTAAGATACAAAC	AAAGCGCAAGCAAAAACGAAATCACCATCTCACCA
GTTTCAATTCCTTATAGTTAAGATACAAAC	TATCACTTTTTCCTGGAGCGCCAAAGATGAAAGTGAAT
GTTTCAATTCCTTATAGTTAAGATACAAAC	CTAGATAAGACTTCCCATGCATCGTTTGTCCCCAGA
GTTTCAATTCCTTATAGTTAAGATACAAAC	TTGGATAAAGCATCCACTTTTTCATTCAATTTCTT
GTTTCAATTCCTTATAGTTAAGATACAAAC	GTAGCTGTTAGTCAAAAAAGACTAACAGTTCAGGG
GTTTCAATTCCTTATAGTTAAGATACAAAC	TTCAATCGTACCGATGGTTTCCCATGTTTTTGCAG
GTTTCAATTCCTTATAGTTAAGATACAAAC	ATTCGGAAGAAGTCGCAAAGGCAATCTATCGTTTTCG
GTTTCAATTCCTTATAGTTAAGATACAAAC	GGCGCTGGATTCCATTCTCTTGATAGGTTCATAGTT
GTTTCAATTCCTTATAGTTAAGATACAAAC	GCACCTTTTCATACCGTTCTGCTTTCTCTAATCTT
GTTTCAATTCCTTATAGTTAAGATACAAAC	AAAAAAAACAGTGCATATGCGATGGGATTCCTCCC
GTTTCAATTCCTTATAGTTAAGATACAAAC	GGGTTCGAAAAAAACAAGGAAAGGGGTATATCATCCA
GTTTCAATTCCTTATAGTTAAGATACAAAC	GTTTGTGTCGCGTTGCGGATGTCAGCATTCACTTTAT
GTTTCAATTCCTTATAGTTAAGATACAAAC	AACGAAGCAGGGGATCGCGATGATGTGGTTTGAGTT
GTTTCAATTCCTTATAGTTAAGATACAAAC	AGGGGTATATCATCCATAATAAAACTGATTACCAAT
GTTTCAATTCCTTATAGTTAAGATACAAAC

>NZ_CP015436|3|3|1330218-1332035|CRT
ATCTTAATTTCTTATAGTTAAGATGAAAAC	ATACACAGCCGATGGACTGATTGATGAACTAATCCCTT
GTTTCAATTCCTTATAGTTAAGATACAAAC	TGGATACTAAACCGCTTGATAAATTGAAGCAAAAAT
GTTTCAATTCCTTATAGTTAAGATACAAAC	GGCGGTTATGCAAGGATATCTTTACGAGAATACGAG
GTTTCAATTCCTTATAGTTAAGATACAAAC	AGAATTGCTGAAATACAACAATGCAGAGTCCCTAGA
GTTTCAATTCCTTATAGTTAAGATACAAAC	GCGCTCTTGAAGTTTCACAATGACTTGTTCCTCCG
GTTTCAATTCCTTATAGTTAAGATACAAAC	TGTTCATCAGAAGTCGGCGGACGGTCAACATATTCA
GTTTCAATTCCTTATAGTTAAGATACAAAC	ATGCATTTGCCAGACCCCGTTATTATAGTCATCCGCG
GTTTCAATTCCTTATAGTTAAGATACAAAC	CGAAATCAACTGTTGTAGCATTTACATTGTCGACAA
GTTTCAATTCCTTATAGTTAAGATACAAAC	TTTACAGGCCGACAATCACGTAAAACCAGTTCATGA
GTTTCAATTCCTTATAGTTAAGATACAAAC	GATGTGAGCAGGATGGAAAATCCCCAACCTTTTGTA
GTTTCAATTCCTTATAGTTAAGATACAAAC	AAAGAATGCAGCATAGCAGCTTGTTCATCTGAAAATT
GTTTCAATTCCTTATAGTTAAGATACAAAC	AAAATCCAATTGTCTGGCATGGAAAGCATGTAGGCAAG
GTTTCAATTCCTTATAGTTAAGATACAAAC	TTCCGTCTTCAAGTTGATATGCAACAATCGGCTGTGTG
GTTTCAATTCCTTATAGTTAAGATACAAAC	AAAGCGCAAGCAAAAACGAAATCACCATCTCACCA
GTTTCAATTCCTTATAGTTAAGATACAAAC	TATCACTTTTTCCTGGAGCGCCAAAGATGAAAGTGAAT
GTTTCAATTCCTTATAGTTAAGATACAAAC	CTAGATAAGACTTCCCATGCATCGTTTGTCCCCAGA
GTTTCAATTCCTTATAGTTAAGATACAAAC	TTGGATAAAGCATCCACTTTTTCATTCAATTTCTT
GTTTCAATTCCTTATAGTTAAGATACAAAC	GTAGCTGTTAGTCAAAAAAGACTAACAGTTCAGGG
GTTTCAATTCCTTATAGTTAAGATACAAAC	TTCAATCGTACCGATGGTTTCCCATGTTTTTGCAG
GTTTCAATTCCTTATAGTTAAGATACAAAC	ATTCGGAAGAAGTCGCAAAGGCAATCTATCGTTTTCG
GTTTCAATTCCTTATAGTTAAGATACAAAC	GGCGCTGGATTCCATTCTCTTGATAGGTTCATAGTT
GTTTCAATTCCTTATAGTTAAGATACAAAC	GCACCTTTTCATACCGTTCTGCTTTCTCTAATCTT
GTTTCAATTCCTTATAGTTAAGATACAAAC	AAAAAAAACAGTGCATATGCGATGGGATTCCTCCC
GTTTCAATTCCTTATAGTTAAGATACAAAC	GGGTTCGAAAAAAACAAGGAAAGGGGTATATCATCCA
GTTTCAATTCCTTATAGTTAAGATACAAAC	GTTTGTGTCGCGTTGCGGATGTCAGCATTCACTTTAT
GTTTCAATTCCTTATAGTTAAGATACAAAC	AACGAAGCAGGGGATCGCGATGATGTGGTTTGAGTT
GTTTCAATTCCTTATAGTTAAGATACAAAC	AGGGGTATATCATCCATAATAAAACTGATTACCAAT
GTTTCAATTCCTTATAGTTAAGATACAAAC

>NZ_CP015436|3|3|1330286-1332035|PILER-CR
GTTTCAATTCCTTATAGTTAAGATACAAAC	TGGATACTAAACCGCTTGATAAATTGAAGCAAAAAT
GTTTCAATTCCTTATAGTTAAGATACAAAC	GGCGGTTATGCAAGGATATCTTTACGAGAATACGAG
GTTTCAATTCCTTATAGTTAAGATACAAAC	AGAATTGCTGAAATACAACAATGCAGAGTCCCTAGA
GTTTCAATTCCTTATAGTTAAGATACAAAC	GCGCTCTTGAAGTTTCACAATGACTTGTTCCTCCG
GTTTCAATTCCTTATAGTTAAGATACAAAC	TGTTCATCAGAAGTCGGCGGACGGTCAACATATTCA
GTTTCAATTCCTTATAGTTAAGATACAAAC	ATGCATTTGCCAGACCCCGTTATTATAGTCATCCGCG
GTTTCAATTCCTTATAGTTAAGATACAAAC	CGAAATCAACTGTTGTAGCATTTACATTGTCGACAA
GTTTCAATTCCTTATAGTTAAGATACAAAC	TTTACAGGCCGACAATCACGTAAAACCAGTTCATGA
GTTTCAATTCCTTATAGTTAAGATACAAAC	GATGTGAGCAGGATGGAAAATCCCCAACCTTTTGTA
GTTTCAATTCCTTATAGTTAAGATACAAAC	AAAGAATGCAGCATAGCAGCTTGTTCATCTGAAAATT
GTTTCAATTCCTTATAGTTAAGATACAAAC	AAAATCCAATTGTCTGGCATGGAAAGCATGTAGGCAAG
GTTTCAATTCCTTATAGTTAAGATACAAAC	TTCCGTCTTCAAGTTGATATGCAACAATCGGCTGTGTG
GTTTCAATTCCTTATAGTTAAGATACAAAC	AAAGCGCAAGCAAAAACGAAATCACCATCTCACCA
GTTTCAATTCCTTATAGTTAAGATACAAAC	TATCACTTTTTCCTGGAGCGCCAAAGATGAAAGTGAAT
GTTTCAATTCCTTATAGTTAAGATACAAAC	CTAGATAAGACTTCCCATGCATCGTTTGTCCCCAGA
GTTTCAATTCCTTATAGTTAAGATACAAAC	TTGGATAAAGCATCCACTTTTTCATTCAATTTCTT
GTTTCAATTCCTTATAGTTAAGATACAAAC	GTAGCTGTTAGTCAAAAAAGACTAACAGTTCAGGG
GTTTCAATTCCTTATAGTTAAGATACAAAC	TTCAATCGTACCGATGGTTTCCCATGTTTTTGCAG
GTTTCAATTCCTTATAGTTAAGATACAAAC	ATTCGGAAGAAGTCGCAAAGGCAATCTATCGTTTTCG
GTTTCAATTCCTTATAGTTAAGATACAAAC	GGCGCTGGATTCCATTCTCTTGATAGGTTCATAGTT
GTTTCAATTCCTTATAGTTAAGATACAAAC	GCACCTTTTCATACCGTTCTGCTTTCTCTAATCTT
GTTTCAATTCCTTATAGTTAAGATACAAAC	AAAAAAAACAGTGCATATGCGATGGGATTCCTCCC
GTTTCAATTCCTTATAGTTAAGATACAAAC	GGGTTCGAAAAAAACAAGGAAAGGGGTATATCATCCA
GTTTCAATTCCTTATAGTTAAGATACAAAC	GTTTGTGTCGCGTTGCGGATGTCAGCATTCACTTTAT
GTTTCAATTCCTTATAGTTAAGATACAAAC	AACGAAGCAGGGGATCGCGATGATGTGGTTTGAGTT
GTTTCAATTCCTTATAGTTAAGATACAAAC	AGGGGTATATCATCCATAATAAAACTGATTACCAAT
GTTTCAATTCCTTATAGTTAAGATACAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015436.1\|WP_066329500.1\|1328832_1329633_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|223955
NZ_CP015436.1\|WP_044742353.1\|1327816_1328692_-\|PaaX-family-transcrtiptional-regulator	unknown	unknown	gnl\|CDD\|225864
NZ_CP015436.1\|WP_044742349.1\|1324331_1324976_-\|phenylacetic-acid-catabolism-protein	unknown	unknown	gnl\|CDD\|368300
NZ_CP015436.1\|WP_044746347.1\|1321224_1321674_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|223894
NZ_CP015436.1\|WP_044741907.1\|1340003_1340984_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213234
NZ_CP015436.1\|WP_044741903.1\|1332449_1332707_-\|type-B-50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234969
NZ_CP015436.1\|WP_156487499.1\|1341289_1342063_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP015436.1\|WP_044742354.1\|1326743_1327727_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293811
NZ_CP015436.1\|WP_044741897.1\|1339240_1340014_-\|multidrug-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226953
NZ_CP015436.1\|WP_044741899.1\|1337657_1338326_-\|SOS-response-associated-peptidase	unknown	unknown	gnl\|CDD\|376837
NZ_CP015436.1\|WP_044742352.1\|1325531_1326467_-\|phenylacetic-acid-catabolic	unknown	unknown	gnl\|CDD\|368300
NZ_CP015436.1\|WP_066150423.1\|1332745_1332895_-\|50S-ribosomal-protein-L33	unknown	unknown	gnl\|CDD\|179075
NZ_CP015436.1\|WP_044741900.1\|1335220_1336054_+\|methionine-ABC-transporter-ATPase	unknown	unknown	gnl\|CDD\|270317
NZ_CP015436.1\|WP_044741898.1\|1338449_1339238_-\|multidrug-transporter	unknown	unknown	gnl\|CDD\|226218
NZ_CP015436.1\|WP_066329497.1\|1323406_1324201_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|223955
NZ_CP015436.1\|WP_044746346.1\|1321705_1323283_-\|benzoate-CoA-ligase-family-protein	unknown	unknown	gnl\|CDD\|341269
NZ_CP015436.1\|WP_044742351.1\|1325205_1325532_-\|metal-sulfur-cluster-assembly-factor	unknown	unknown	gnl\|CDD\|225062
NZ_CP015436.1\|WP_044741902.1\|1333510_1334524_+\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236863
NZ_CP015436.1\|WP_044742350.1\|1324972_1325206_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044741901.1\|1334513_1335179_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922

Protein	Function_ID	Function_description	E-value
NZ_CP015436.1\|WP_066329500.1\|1328832_1329633_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|223955	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism].	5.52865e-71
NZ_CP015436.1\|WP_044742353.1\|1327816_1328692_-\|PaaX-family-transcrtiptional-regulator	gnl\|CDD\|225864	COG3327, PaaX, Phenylacetic acid-responsive transcriptional repressor [Transcription].	1.12423e-69
NZ_CP015436.1\|WP_044742349.1\|1324331_1324976_-\|phenylacetic-acid-catabolism-protein	gnl\|CDD\|368300	pfam05138, PaaA_PaaC, Phenylacetic acid catabolic protein. This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid. These proteins may form part of a dioxygenase complex.	2.46663e-06
NZ_CP015436.1\|WP_044746347.1\|1321224_1321674_-\|acyl-CoA-thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	1.69501e-30
NZ_CP015436.1\|WP_044741907.1\|1340003_1340984_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213234	cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA. NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.	6.03669e-142
NZ_CP015436.1\|WP_044741903.1\|1332449_1332707_-\|type-B-50S-ribosomal-protein-L31	gnl\|CDD\|234969	PRK01678, rpmE2, type B 50S ribosomal protein L31.	8.92835e-48
NZ_CP015436.1\|WP_156487499.1\|1341289_1342063_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	9.85842e-50
NZ_CP015436.1\|WP_044742354.1\|1326743_1327727_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293811	cd07725, TTHA1429-like_MBL-fold, uncharacterized Thermus thermophilus TTHA1429 and related proteins; MBL-fold metallo hydrolase domain. Includes the MBL-fold metallo hydrolase domain of uncharacterized Thermus thermophilus TTHA1429 and related proteins. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	7.82564e-28
NZ_CP015436.1\|WP_044741897.1\|1339240_1340014_-\|multidrug-ABC-transporter-permease	gnl\|CDD\|226953	COG4587, COG4587, ABC-type uncharacterized transport system, permease component [General function prediction only].	2.42538e-36
NZ_CP015436.1\|WP_044741899.1\|1337657_1338326_-\|SOS-response-associated-peptidase	gnl\|CDD\|376837	pfam02586, SRAP, SOS response associated peptidase (SRAP). The SRAP family functions as a DNA-associated autoproteolytic switch that recruits diverse repair enzymes onto DNA damage. We propose that the human protein Q96FZ2:UniProtKB, the eukaryotic member of the SRAP family, which has been recently shown to bind specifically to DNA with 5-hydroxymethylcytosine, 5-formylcytosine and 5-carboxycytosine, is a sensor for these oxidized bases generated by the TET (tetrahedral aminopeptidase of the M42 family) enzymes from methylcytosine. Hence, its autoproteolytic activity might help it act as a switch that recruits DNA repair enzymes to remove these oxidized methylcytosine species as part of the DNA demethylation pathway downstream of the TET enzymes.	3.7937e-115
NZ_CP015436.1\|WP_044742352.1\|1325531_1326467_-\|phenylacetic-acid-catabolic	gnl\|CDD\|368300	pfam05138, PaaA_PaaC, Phenylacetic acid catabolic protein. This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid. These proteins may form part of a dioxygenase complex.	8.46782e-74
NZ_CP015436.1\|WP_066150423.1\|1332745_1332895_-\|50S-ribosomal-protein-L33	gnl\|CDD\|179075	PRK00595, rpmG, 50S ribosomal protein L33; Validated.	6.36897e-20
NZ_CP015436.1\|WP_044741900.1\|1335220_1336054_+\|methionine-ABC-transporter-ATPase	gnl\|CDD\|270317	cd13599, PBP2_lipoprotein_Gna1946, The membrane-associated lipoprotein Gna1946 from Neisseria meningitidis; the type 2 periplasmic binding protein fold. Gna1946 shares significant structural and sequence homology with the periplasmic substrate-binding domain of ATP-binding cassette (ABC) transporter involved in uptake of methionine (MetQ). The members of the MetQ-like family include the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum, the membrane-associated lipoprotein-9 GmpC from Staphylococcus aureus, and Toll-like receptor 2-activating lipoprotein IlpA from Vibrio vulnificus. They all function as a receptor for methionine. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.	1.41523e-111
NZ_CP015436.1\|WP_044741898.1\|1338449_1339238_-\|multidrug-transporter	gnl\|CDD\|226218	COG3694, COG3694, ABC-type uncharacterized transport system, permease component [General function prediction only].	3.99614e-56
NZ_CP015436.1\|WP_066329497.1\|1323406_1324201_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|223955	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism].	1.8099e-70
NZ_CP015436.1\|WP_044746346.1\|1321705_1323283_-\|benzoate-CoA-ligase-family-protein	gnl\|CDD\|341269	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase). Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process.	0
NZ_CP015436.1\|WP_044742351.1\|1325205_1325532_-\|metal-sulfur-cluster-assembly-factor	gnl\|CDD\|225062	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only].	2.57932e-28
NZ_CP015436.1\|WP_044741902.1\|1333510_1334524_+\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	0
NZ_CP015436.1\|WP_044741901.1\|1334513_1335179_+\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	2.74473e-95

>NZ_CP015436.1|WP_066329500.1|1328832_1329633_-|enoyl-CoA-hydratase/isomerase-family-protein
MAQETVTKTKNLTVVKNEGVAEIHLHINKSNSYDLAFYQELNAAIDDIRFDPNIKVVVLMSDMPKFFSAGADIHFLRAADPRFKTQFCLFCNETLDKIARAPQVYIACLEGHTVGGGLEMALACDLRFMGEEAGKIGLPEVTLGVLAGTGGTQRLARLVGYSRALDMNISGETVTPQEALEIGLVNKVFPQAETRERTLEYARKIVNSATYAVSNIKLSIMNGKEMPLNVAIRYEGELQNLLFRSEDAKEGLSAFLEKRQPNWKGN
>NZ_CP015436.1|WP_044742353.1|1327816_1328692_-|PaaX-family-transcrtiptional-regulator
MKPRGLMFTLFGEYIQHYGNEVWIGSLIQMMSHFGISESSIRGAALRMVQQEFFEVRKIGNNSYYSLTPKGKRTMTDGFIRVYSLKNYKWDGYWRILTYSVPEEKRELRNQIRKELSLMGFGLISHGTWASPNPVEQQVMELIRDYHLDPYVILFTSSSIVSHSHEQLIKRGWDFAQIAKEYDRFIDTYQRIYEEFQRRAWNNELSDRECFIERTKLVHEYRSFFFMDPSFPHDLLPDNWSGTKARELFFNVHQLLAVPAIRYFETLFESAPDREPQLNREKAINPFIGMI
>NZ_CP015436.1|WP_044742354.1|1326743_1327727_-|MBL-fold-metallo-hydrolase
MLMVNIEIIQDHMYRIPVPVPFPMKYVYCYLFREADGWSIVDVGFHYPDAIDTWEKAFQQLHVDCRQIHSIYLTHFHPDHFGLAGWMQRQTGAQVWISREDYAMAERVWKEGSDQAEQVGEAFRQHGVPDELVSQIEESMQKLAQHVMPFPSLSILNRDEVILGQKQWKVIEVPGHSDGLINFYQPELRYLLVSDHVLERITPNISVWPGSHPNPLQRYVSSLHRVKELDVAIAFPAHGEVIRYLRQRVDDILRHHEKRLHHMKSLASEGKTAYEVACAVFGHKSLTAHQWRFAIAETLAHLDYLVSRGELQKEKRNGSVVYQSEEK
>NZ_CP015436.1|WP_044742352.1|1325531_1326467_-|phenylacetic-acid-catabolic
MDPSTILKEKVQNGFIVEGLEDMNEEYLQALKQTLIIVGDTELLSIPPLLTVYDQAPTLNNKITALAIMQDEIGHAHIAYRLLKDLGQNIDDLLYKREPHRWKNPYAFDFELSNWIELGVFNAFFDRAGYTLLGDAFEYTSYGPWKRALVKVDKEELFHLRNGEVIMRTAMQDPELREEVQKAVDWMFLMALEFFGVEDRLKSRSAQLEYRLKGRTNDELRQKWLSTAVPFCESIGVKVPAHYDEQQQKYVLDVPFPCKFDPVNKKWLVDQPDTWDNVIKRFKQRGPQNKQFVERIQKGAKELEQLRKDAV
>NZ_CP015436.1|WP_044742351.1|1325205_1325532_-|metal-sulfur-cluster-assembly-factor
MGKIGSDTKKYWEALKEVMDPEFPISVVDMGLIYDIEKNGDELQITMTYTAVSCACMEWIEQDIRHRLLQENEVQAVQINVVWDPPWTVDRLSPEGREKLKYWGVSSK
>NZ_CP015436.1|WP_044742350.1|1324972_1325206_-|hypothetical-protein
MVATKRKTFDIFARIKRGDPLTHIGTVEAENEHLAKVYASFTYDEEDWSEMTVVDRSQIVWVKKPNWLFAQKEGRVR
>NZ_CP015436.1|WP_044742349.1|1324331_1324976_-|phenylacetic-acid-catabolism-protein
MNHTQREVHALTELLETIADHKYVLGDRLVEVGVSGPNIEATLAAIAMAQGELGHARLLYNWCFDLRGIRGKKAEIYGQTGKAFTSIVNVNNWITLIAALYATNLAIDIVWQSFLQANHPAVTSRIQKLIREQQDHLIYARSWAYELRHEQGAIPSRFAQALNHTVNEVYVWLTEIEKKEELQTEGYLPMNINLANQFKEQLKEVAAESLVQMN
>NZ_CP015436.1|WP_066329497.1|1323406_1324201_-|enoyl-CoA-hydratase/isomerase-family-protein
MAVETKTKNLTVVKNEGVAEIHLHINKSNSYDLAFYQELNAAIDDIRFDPNIKVVVLMSDMPKFFSAGADIHFLRAADPRFKTQFCLFCNETLDKIARAPQVYIACLEGHTVGGGLEMALACDLRFMGEEAGKIGLPEVTLGVLAGTGGTQRLARLVGYSRALDMNISGETVTPQEALEIGLVNKVFPQAETRERTLEYARKIVNSATYAVSNIKLSIMNGKEMPLNVAIRYEGELQNLLFRSEDAKEGLSAFLEKRQPNWKGM
>NZ_CP015436.1|WP_044746346.1|1321705_1323283_-|benzoate-CoA-ligase-family-protein
MELRGLGMLYNAANLFIDDHIRNGLGEKTAIYYHDQQICYRELQERTNQTGNMLRTLGYKLEDRIIMVCHDSPEFIYTFFGAIKIGAVPIPVNTMMQPADYEYFLNNSRAKGLIIHADLWEALQHLKERFVFLEHVIVIYESADIKRGGTLDFYRLLDRASKELDVAPTNKDDAAFWLFSSGSTGEPKGVIHLQHDMEYALNTYAKQVLKITEDDRCLSASKLYFAYGLGGGLYFPLGVGASTILVKERPLPEMIFEAIETYKPTIFFGVPTLYGAMIDYVQKTGKQFDLRSLRVCVSAGEALPPAFYRKWKELFNVDILDGIGSTEALHIFISNRLGDIKEGSSGKVVPGYDVKIIDSQGMELPPNEIGDLVIHGDSIAHGYWNLHEQNKKKFVGDWLYIGDKYYRDEDGYYWYCGRSDDMLKVGGIWVSPIEIENCLLQHDDVLEAAVVSIENDRNLTIPKAFVVLKDGIEPSKEKEEELKQFAKQHLAHYKHPRVIEFIDQLPKTATGKIQRFKLRELLKHQ
>NZ_CP015436.1|WP_044746347.1|1321224_1321674_-|acyl-CoA-thioesterase
MKRNEFQLRVNFGDTDTAGIVYYPNYFKWFDIAGHQFFRSIGLPPLKLMKEQQIILPLLQADCTFEHPLYYDDVVTIKTEVEEINRKTVKLKHEVFRGEMRTGYGFEVRGWVKEDSGRIFAVPIPDDVRKLLEEEGMGPCVQVNPWLHA
>NZ_CP015436.1|WP_044741903.1|1332449_1332707_-|type-B-50S-ribosomal-protein-L31
MKPGIHPNYQKVVFMDVNSEYKFLSGSTKSSNETIVWEDGNTYPLIKVEISSDTHPFYTGKQKFTDRRGRAEQFMKKYHLQQQDK
>NZ_CP015436.1|WP_066150423.1|1332745_1332895_-|50S-ribosomal-protein-L33
MRVKVILQCTETGDRNYITTKNKRNNPERLELRKYSPRLKRYTLHRETK
>NZ_CP015436.1|WP_044741902.1|1333510_1334524_+|methionine-ABC-transporter-ATP-binding-protein
MIEIKDVTKIYTSKNRQVIGVDHVSLTIQAGEIFGVIGYSGAGKSTLLRCLNLLERPTSGQIMIDGVDLTSLNSEQLRQARLKIGMIFQHFYLVSSKTVFENIAFALKAANKPKEEIEKRVNELLDIVGLSDKRDAYPAQLSGGQKQRVGIARALANDPNVLLCDEATSALDPSTTKSILTLLKKINRELGITIVLITHEMEVVKDICDRVAVMQNGKIIELGTVYELFTDPKEELTKSFINSILQFEIPEHLLQKRTGTMVKILFKGESAEEAIVSDMLQTFKVKGNILHGKIEYIQNIPLGVFIMELTGERKEIERALDYISERTNGLEVIAHAA
>NZ_CP015436.1|WP_044741901.1|1334513_1335179_+|ABC-transporter-permease
MLLNALIDLIPELNKAFLETIYMVAISLCIAILIGLPLGILLFVTDRGLFLENNIVKSVLGFAVNLIRSIPFVILLVGLLPLTRLITGTTIGPTAASVSLSVAAIPFFARMVETSLREIEKGVIEAAIAVGATPWMIIKDVLLSEARPGIVHGITITTISLVGYSAMAGIVGGGGIGDLAIRFGYYRYDNTVMITTIVVLICLVQIIQFSGERIARLVDKR
>NZ_CP015436.1|WP_044741900.1|1335220_1336054_+|methionine-ABC-transporter-ATPase
MKKRLVLLICLLSFSLLAACGNKEAASGSTQKKELTIGATSGPYSDMVNQAIKPLLEKKGYKVKVVEFSDYIQPNLALANGDLDANLFQHKIYMETFAKEHHLDLSEVIIVPTAPMGIYSKKFKSLNEIKDGSEMAIPNDPTNLARALLILQDQKLIQLDSSVNPLTVSEKDIKENVKHLKFKPIEAGQLPRTVESVDLAAVPGNFALAAKMDLNDALALENMPDDYRNRIVVNTKDLKQPFVKDIQAVVQSKEFEKVIDQNFKGFGKPKWMLERKQ
>NZ_CP015436.1|WP_044741899.1|1337657_1338326_-|SOS-response-associated-peptidase
MCGRFSLAADIEQLQALFHFVFPEPLSPRFNIAPSQAVLTVVEENGMRIGKMMRWGLVPAWANDPKIGWKMINARGETVDEKASFRQALKRRRCLILADGFYEWKKEGTNKIPYRFTLRNGEPFAFAGLWEKWDKQGTALYTCTIITTEANELVSPIHERMPVILPPEQHEAWLDAKLEDTDYVKSLLKPYAAAKMSMYEVASIVNSPKNDVRACLEPIHSQ
>NZ_CP015436.1|WP_044741898.1|1338449_1339238_-|multidrug-transporter
MGRYWRIFHEFFRACFVEELEYRSEFLGNLVSSFFGIGIAILTIHIFFYQTDRLGGWTYADVLVLLGVFNTLKGWIDFALRPNMSRLLEHVRRGTLDYILTKPVDSMFYVSCRHLVFWRLVDVALGLGLIVYGLAEKHYMPSLVDILVFLITMASSLVLIYSLWMMLMTTSFWVIRIDDLSFIFDSFFETARFPIGMYRGWVRVILTYVLPAAVITNMPALSLLGKWNMATALIAGLLAVVFLWLARRFWRFALRSYTSASS
>NZ_CP015436.1|WP_044741897.1|1339240_1340014_-|multidrug-ABC-transporter-permease
MVRKYAALLRMKYMEMLAYRLATIVWMTGAITQPLITMAVWINIDPSQSDAFFFYFMAVIFVERMTSAWDVWELDREIREGTFSNYIIRPLHPIHWAIAENVVYKLLFLVILIPIWAGVALFVPALRVEISMSQLLLFLAAVLMGALLRFLLSYTCGLLGFWITKVAAIYSVLEVISLFLSGRIAPLSMLPPLLQQWSIFLPFRYMIGFPIDLISQAANGHEVRQGFMIASVWAVIFIMMLQWIWKAGLKKNQAVGG
>NZ_CP015436.1|WP_044741907.1|1340003_1340984_-|ATP-binding-cassette-domain-containing-protein
MIEVQHLHKSFRVHVRQAGWLDAVRHLWKRQYQVVEAVKDISFTIPKGEIVGFLGPNGAGKTTTMKMLAGLLHPTSGKMNVGGFVPFEQRPEFKKMMSLVMGQKSQLIWDIPPMETFLVNKAIYEIDDRTFRRTLDELVELLELQPLLTKPTRSLSLGQRMRCELAAALLHRPAILFLDEPTIGLDVHTQEKVRRFIAEYNREHQTTILLTSHYMGDVTALCDRIMMINYGQLIYDGELSVLTEKLAPYKRLEVRFSEVPNARWEDYGEVAEIEDSQVVLRVNRERVAEVSAHFLQHFHVHDINIQDPPMEEVITRAFQEELSHGS
>NZ_CP015436.1|WP_156487499.1|1341289_1342063_-|IS3-family-transposase
MLQVGQTTGTPFSKASRRQASKEKIEERHPEHKGIYGYRRVQVWLKRKHKRDINHKRVRRLMREMGIRALIRKKRPYYGKKEPYVISDNHLNRDFHVSKPNKKWVTDMTYLIFNGQKLYLSAIEDLSNNEIVADHISRRNDIKLVIDTLKKAIKKRNVNGLLLHSDQGFRYTSHQYNNLLKRYNIKASMSRKGNGLDNACMEHFFRHFKAECFHLCSFRTAEEVKEAVHQSIRFYNHHRFQKKLHNLSPYEYRTQAA

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Crispr_ID: NZ_CP015436_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015436_4

1343824-1344387

Orphan

Consensus_repeat	Method
GTTTCAATCCCTCATAGTTAAGATACAAAC	CRISPRCasFinder
GTTTCAATCCCTNATAGTTAAGATACAAAC	CRT
GTTTGTATCTTAACTATCAGGGATTGAAAC	PILER-CR

8 spacers

The CRISPR arrays of NZ_CP015436_4

>merge|NZ_CP015436|4|1343824-1344387|CRISPRCasFinder,CRT,PILER-CR
AACCCAATTCCTCATAGTTAAGATATAAACATCTGTTCTGCCACTTTTGGCGGAACAAATTCAGAAAGTTTCAATCCCTCATAGTTAAGATACAAACCGCTAGCCCAGAAATGAAACTCCTTCACACATCCATGTTTCAATCCCTCATAGTTAAGATACAAACGATTGACAAGGGGCGTGAGGAGCGCGAGAAAAAGATGTTTCAATCCCTGATAGTTAAGATACAAACAAATACGCTTGACCTCTTGCATATTTTAGAGGTAATGGTTTCAATCCCTGATAGTTAAGATACAAACGCAAGTTGGAGGCTAAGCTATCAGAATCAAATTATTCGTTTCAATCCCTGATAGTTAAGATACAAACATAATGGAAGTTGGATCAAAATTGTTGCATCGAATGAGTTTCAATCCCTGATAGTTAAGATACAAACCAATGCCGTTAACCTTTTTCTTCAAAGTAGACTCCGCGGTTTCAATCCCTGATAGTTAAGATACAAACAAAGCTTATCGATTTCACCAGGTGTAAACAGCTTTCGTTTCAATCCCTGATAGTTAAGATACAAAC

>NZ_CP015436|4|4|1343824-1344387|CRISPRCasFinder
AACCCAATTCCTCATAGTTAAGATATAAAC	ATCTGTTCTGCCACTTTTGGCGGAACAAATTCAGAAA
GTTTCAATCCCTCATAGTTAAGATACAAAC	CGCTAGCCCAGAAATGAAACTCCTTCACACATCCAT
GTTTCAATCCCTCATAGTTAAGATACAAAC	GATTGACAAGGGGCGTGAGGAGCGCGAGAAAAAGAT
GTTTCAATCCCTGATAGTTAAGATACAAAC	AAATACGCTTGACCTCTTGCATATTTTAGAGGTAATG
GTTTCAATCCCTGATAGTTAAGATACAAAC	GCAAGTTGGAGGCTAAGCTATCAGAATCAAATTATTC
GTTTCAATCCCTGATAGTTAAGATACAAAC	ATAATGGAAGTTGGATCAAAATTGTTGCATCGAATGA
GTTTCAATCCCTGATAGTTAAGATACAAAC	CAATGCCGTTAACCTTTTTCTTCAAAGTAGACTCCGCG
GTTTCAATCCCTGATAGTTAAGATACAAAC	AAAGCTTATCGATTTCACCAGGTGTAAACAGCTTTC
GTTTCAATCCCTGATAGTTAAGATACAAAC

>NZ_CP015436|4|4|1343824-1344387|CRT
AACCCAATTCCTCATAGTTAAGATATAAAC	ATCTGTTCTGCCACTTTTGGCGGAACAAATTCAGAAA
GTTTCAATCCCTCATAGTTAAGATACAAAC	CGCTAGCCCAGAAATGAAACTCCTTCACACATCCAT
GTTTCAATCCCTCATAGTTAAGATACAAAC	GATTGACAAGGGGCGTGAGGAGCGCGAGAAAAAGAT
GTTTCAATCCCTGATAGTTAAGATACAAAC	AAATACGCTTGACCTCTTGCATATTTTAGAGGTAATG
GTTTCAATCCCTGATAGTTAAGATACAAAC	GCAAGTTGGAGGCTAAGCTATCAGAATCAAATTATTC
GTTTCAATCCCTGATAGTTAAGATACAAAC	ATAATGGAAGTTGGATCAAAATTGTTGCATCGAATGA
GTTTCAATCCCTGATAGTTAAGATACAAAC	CAATGCCGTTAACCTTTTTCTTCAAAGTAGACTCCGCG
GTTTCAATCCCTGATAGTTAAGATACAAAC	AAAGCTTATCGATTTCACCAGGTGTAAACAGCTTTC
GTTTCAATCCCTGATAGTTAAGATACAAAC

>NZ_CP015436|4|4|1343891-1344387|PILER-CR
GTTTCAATCCCTCATAGTTAAGATACAAAC	CGCTAGCCCAGAAATGAAACTCCTTCACACATCCAT
GTTTCAATCCCTCATAGTTAAGATACAAAC	GATTGACAAGGGGCGTGAGGAGCGCGAGAAAAAGAT
GTTTCAATCCCTGATAGTTAAGATACAAAC	AAATACGCTTGACCTCTTGCATATTTTAGAGGTAATG
GTTTCAATCCCTGATAGTTAAGATACAAAC	GCAAGTTGGAGGCTAAGCTATCAGAATCAAATTATTC
GTTTCAATCCCTGATAGTTAAGATACAAAC	ATAATGGAAGTTGGATCAAAATTGTTGCATCGAATGA
GTTTCAATCCCTGATAGTTAAGATACAAAC	CAATGCCGTTAACCTTTTTCTTCAAAGTAGACTCCGCG
GTTTCAATCCCTGATAGTTAAGATACAAAC	AAAGCTTATCGATTTCACCAGGTGTAAACAGCTTTC
GTTTCAATCCCTGATAGTTAAGATACAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015436.1\|WP_044741904.1\|1354077_1355634_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341247
NZ_CP015436.1\|WP_080862588.1\|1347175_1347295_+\|YhfH-family-protein	unknown	unknown	gnl\|CDD\|379490
NZ_CP015436.1\|WP_044741899.1\|1337657_1338326_-\|SOS-response-associated-peptidase	unknown	unknown	gnl\|CDD\|376837
NZ_CP015436.1\|WP_044741897.1\|1339240_1340014_-\|multidrug-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226953
NZ_CP015436.1\|WP_044741889.1\|1353256_1354045_-\|crotonase	unknown	unknown	gnl\|CDD\|235852
NZ_CP015436.1\|WP_044741907.1\|1340003_1340984_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213234
NZ_CP015436.1\|WP_082063469.1\|1351819_1353157_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|273320
NZ_CP015436.1\|WP_156487499.1\|1341289_1342063_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP015436.1\|WP_156487496.1\|1348462_1349251_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP015436.1\|WP_156487498.1\|1346619_1346778_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044741891.1\|1349324_1349606_-\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP015436.1\|WP_044741893.1\|1345895_1346420_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239489
NZ_CP015436.1\|WP_044741902.1\|1333510_1334524_+\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236863
NZ_CP015436.1\|WP_044741900.1\|1335220_1336054_+\|methionine-ABC-transporter-ATPase	unknown	unknown	gnl\|CDD\|270317
NZ_CP015436.1\|WP_044741898.1\|1338449_1339238_-\|multidrug-transporter	unknown	unknown	gnl\|CDD\|226218
NZ_CP015436.1\|WP_044741894.1\|1344730_1345873_-\|glycosyltransferase-family-1-protein	unknown	unknown	gnl\|CDD\|340842
NZ_CP015436.1\|WP_044741901.1\|1334513_1335179_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_CP015436.1\|WP_156487497.1\|1347801_1347954_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_080859517.1\|1342498_1342681_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|377942
NZ_CP015436.1\|WP_044741896.1\|1342708_1343140_+\|pilus-assembly-protein-HicB	unknown	unknown	gnl\|CDD\|374224

Protein	Function_ID	Function_description	E-value
NZ_CP015436.1\|WP_044741904.1\|1354077_1355634_-\|AMP-binding-protein	gnl\|CDD\|341247	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL). CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions.	2.54864e-165
NZ_CP015436.1\|WP_080862588.1\|1347175_1347295_+\|YhfH-family-protein	gnl\|CDD\|379490	pfam14149, YhfH, YhfH-like protein. The YhfH-like protein family includes the B. subtilis YhfH protein, which is functionally uncharacterized. Its expression is repressed by the Spx paralogue MgsR, which regulates genes involved in stress response. This family of proteins is found in bacteria. Proteins in this family are typically between 42 and 53 amino acids in length.	2.29195e-05
NZ_CP015436.1\|WP_044741899.1\|1337657_1338326_-\|SOS-response-associated-peptidase	gnl\|CDD\|376837	pfam02586, SRAP, SOS response associated peptidase (SRAP). The SRAP family functions as a DNA-associated autoproteolytic switch that recruits diverse repair enzymes onto DNA damage. We propose that the human protein Q96FZ2:UniProtKB, the eukaryotic member of the SRAP family, which has been recently shown to bind specifically to DNA with 5-hydroxymethylcytosine, 5-formylcytosine and 5-carboxycytosine, is a sensor for these oxidized bases generated by the TET (tetrahedral aminopeptidase of the M42 family) enzymes from methylcytosine. Hence, its autoproteolytic activity might help it act as a switch that recruits DNA repair enzymes to remove these oxidized methylcytosine species as part of the DNA demethylation pathway downstream of the TET enzymes.	3.7937e-115
NZ_CP015436.1\|WP_044741897.1\|1339240_1340014_-\|multidrug-ABC-transporter-permease	gnl\|CDD\|226953	COG4587, COG4587, ABC-type uncharacterized transport system, permease component [General function prediction only].	2.42538e-36
NZ_CP015436.1\|WP_044741889.1\|1353256_1354045_-\|crotonase	gnl\|CDD\|235852	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.	1.56366e-75
NZ_CP015436.1\|WP_044741907.1\|1340003_1340984_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213234	cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA. NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.	6.03669e-142
NZ_CP015436.1\|WP_156487499.1\|1341289_1342063_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	9.85842e-50
NZ_CP015436.1\|WP_156487496.1\|1348462_1349251_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.95508e-68
NZ_CP015436.1\|WP_082063469.1\|1351819_1353157_-\|MFS-transporter	gnl\|CDD\|273320	TIGR00883, Putative_metabolite_transport_protein, metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. [Transport and binding proteins, Unknown substrate].	4.7129e-66
NZ_CP015436.1\|WP_044741891.1\|1349324_1349606_-\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	1.61636e-10
NZ_CP015436.1\|WP_044741893.1\|1345895_1346420_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|239489	cd03395, PAP2_like_4, PAP2_like_4 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	6.96729e-21
NZ_CP015436.1\|WP_044741902.1\|1333510_1334524_+\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	0
NZ_CP015436.1\|WP_044741900.1\|1335220_1336054_+\|methionine-ABC-transporter-ATPase	gnl\|CDD\|270317	cd13599, PBP2_lipoprotein_Gna1946, The membrane-associated lipoprotein Gna1946 from Neisseria meningitidis; the type 2 periplasmic binding protein fold. Gna1946 shares significant structural and sequence homology with the periplasmic substrate-binding domain of ATP-binding cassette (ABC) transporter involved in uptake of methionine (MetQ). The members of the MetQ-like family include the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum, the membrane-associated lipoprotein-9 GmpC from Staphylococcus aureus, and Toll-like receptor 2-activating lipoprotein IlpA from Vibrio vulnificus. They all function as a receptor for methionine. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.	1.41523e-111
NZ_CP015436.1\|WP_044741898.1\|1338449_1339238_-\|multidrug-transporter	gnl\|CDD\|226218	COG3694, COG3694, ABC-type uncharacterized transport system, permease component [General function prediction only].	3.99614e-56
NZ_CP015436.1\|WP_044741894.1\|1344730_1345873_-\|glycosyltransferase-family-1-protein	gnl\|CDD\|340842	cd03814, GT4-like, glycosyltransferase family 4 proteins. This family is most closely related to the GT4 family of glycosyltransferases and includes a sequence annotated as alpha-D-mannose-alpha(1-6)phosphatidyl myo-inositol monomannoside transferase from Bacillus halodurans. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria and eukaryotes.	6.43363e-140
NZ_CP015436.1\|WP_044741901.1\|1334513_1335179_+\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	2.74473e-95
NZ_CP015436.1\|WP_080859517.1\|1342498_1342681_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	4.40668e-21
NZ_CP015436.1\|WP_044741896.1\|1342708_1343140_+\|pilus-assembly-protein-HicB	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	7.84943e-17

>NZ_CP015436.1|WP_044741896.1|1342708_1343140_+|pilus-assembly-protein-HicB
MAKYYFPAIFDPGTDGSEGYTVTFPDLSGCITEGETLEEAFRMAKDALEGYLYGMEEDNESIPSPSNPKDIELPKGAFVSVIEARTDYIREEMANKAIKKTLTIPKWLNDAAEAEGINFSQLLQFAIKERLGINVRNDFDFKR
>NZ_CP015436.1|WP_080859517.1|1342498_1342681_+|type-II-toxin-antitoxin-system-HicA-family-toxin
MSSKELIKLLKKDGWYLHRIVGSHHHFKHPTKKGTVTVPHPRKDLKPGTLHSILKQAGLK
>NZ_CP015436.1|WP_156487499.1|1341289_1342063_-|IS3-family-transposase
MLQVGQTTGTPFSKASRRQASKEKIEERHPEHKGIYGYRRVQVWLKRKHKRDINHKRVRRLMREMGIRALIRKKRPYYGKKEPYVISDNHLNRDFHVSKPNKKWVTDMTYLIFNGQKLYLSAIEDLSNNEIVADHISRRNDIKLVIDTLKKAIKKRNVNGLLLHSDQGFRYTSHQYNNLLKRYNIKASMSRKGNGLDNACMEHFFRHFKAECFHLCSFRTAEEVKEAVHQSIRFYNHHRFQKKLHNLSPYEYRTQAA
>NZ_CP015436.1|WP_044741907.1|1340003_1340984_-|ATP-binding-cassette-domain-containing-protein
MIEVQHLHKSFRVHVRQAGWLDAVRHLWKRQYQVVEAVKDISFTIPKGEIVGFLGPNGAGKTTTMKMLAGLLHPTSGKMNVGGFVPFEQRPEFKKMMSLVMGQKSQLIWDIPPMETFLVNKAIYEIDDRTFRRTLDELVELLELQPLLTKPTRSLSLGQRMRCELAAALLHRPAILFLDEPTIGLDVHTQEKVRRFIAEYNREHQTTILLTSHYMGDVTALCDRIMMINYGQLIYDGELSVLTEKLAPYKRLEVRFSEVPNARWEDYGEVAEIEDSQVVLRVNRERVAEVSAHFLQHFHVHDINIQDPPMEEVITRAFQEELSHGS
>NZ_CP015436.1|WP_044741897.1|1339240_1340014_-|multidrug-ABC-transporter-permease
MVRKYAALLRMKYMEMLAYRLATIVWMTGAITQPLITMAVWINIDPSQSDAFFFYFMAVIFVERMTSAWDVWELDREIREGTFSNYIIRPLHPIHWAIAENVVYKLLFLVILIPIWAGVALFVPALRVEISMSQLLLFLAAVLMGALLRFLLSYTCGLLGFWITKVAAIYSVLEVISLFLSGRIAPLSMLPPLLQQWSIFLPFRYMIGFPIDLISQAANGHEVRQGFMIASVWAVIFIMMLQWIWKAGLKKNQAVGG
>NZ_CP015436.1|WP_044741898.1|1338449_1339238_-|multidrug-transporter
MGRYWRIFHEFFRACFVEELEYRSEFLGNLVSSFFGIGIAILTIHIFFYQTDRLGGWTYADVLVLLGVFNTLKGWIDFALRPNMSRLLEHVRRGTLDYILTKPVDSMFYVSCRHLVFWRLVDVALGLGLIVYGLAEKHYMPSLVDILVFLITMASSLVLIYSLWMMLMTTSFWVIRIDDLSFIFDSFFETARFPIGMYRGWVRVILTYVLPAAVITNMPALSLLGKWNMATALIAGLLAVVFLWLARRFWRFALRSYTSASS
>NZ_CP015436.1|WP_044741899.1|1337657_1338326_-|SOS-response-associated-peptidase
MCGRFSLAADIEQLQALFHFVFPEPLSPRFNIAPSQAVLTVVEENGMRIGKMMRWGLVPAWANDPKIGWKMINARGETVDEKASFRQALKRRRCLILADGFYEWKKEGTNKIPYRFTLRNGEPFAFAGLWEKWDKQGTALYTCTIITTEANELVSPIHERMPVILPPEQHEAWLDAKLEDTDYVKSLLKPYAAAKMSMYEVASIVNSPKNDVRACLEPIHSQ
>NZ_CP015436.1|WP_044741900.1|1335220_1336054_+|methionine-ABC-transporter-ATPase
MKKRLVLLICLLSFSLLAACGNKEAASGSTQKKELTIGATSGPYSDMVNQAIKPLLEKKGYKVKVVEFSDYIQPNLALANGDLDANLFQHKIYMETFAKEHHLDLSEVIIVPTAPMGIYSKKFKSLNEIKDGSEMAIPNDPTNLARALLILQDQKLIQLDSSVNPLTVSEKDIKENVKHLKFKPIEAGQLPRTVESVDLAAVPGNFALAAKMDLNDALALENMPDDYRNRIVVNTKDLKQPFVKDIQAVVQSKEFEKVIDQNFKGFGKPKWMLERKQ
>NZ_CP015436.1|WP_044741901.1|1334513_1335179_+|ABC-transporter-permease
MLLNALIDLIPELNKAFLETIYMVAISLCIAILIGLPLGILLFVTDRGLFLENNIVKSVLGFAVNLIRSIPFVILLVGLLPLTRLITGTTIGPTAASVSLSVAAIPFFARMVETSLREIEKGVIEAAIAVGATPWMIIKDVLLSEARPGIVHGITITTISLVGYSAMAGIVGGGGIGDLAIRFGYYRYDNTVMITTIVVLICLVQIIQFSGERIARLVDKR
>NZ_CP015436.1|WP_044741902.1|1333510_1334524_+|methionine-ABC-transporter-ATP-binding-protein
MIEIKDVTKIYTSKNRQVIGVDHVSLTIQAGEIFGVIGYSGAGKSTLLRCLNLLERPTSGQIMIDGVDLTSLNSEQLRQARLKIGMIFQHFYLVSSKTVFENIAFALKAANKPKEEIEKRVNELLDIVGLSDKRDAYPAQLSGGQKQRVGIARALANDPNVLLCDEATSALDPSTTKSILTLLKKINRELGITIVLITHEMEVVKDICDRVAVMQNGKIIELGTVYELFTDPKEELTKSFINSILQFEIPEHLLQKRTGTMVKILFKGESAEEAIVSDMLQTFKVKGNILHGKIEYIQNIPLGVFIMELTGERKEIERALDYISERTNGLEVIAHAA
>NZ_CP015436.1|WP_044741894.1|1344730_1345873_-|glycosyltransferase-family-1-protein
MRVSLFTDTFVPEINGVARTLKRLTDFFEKKNIEYKVFAPEIPDYPFFHSRIHRLSSFRFFLYPECRVAVSNVLQMKAELQAFQPHLIHVATPFNIGLCGLHYAKKMQVPLVGSYHTNFDHYLRYYDLQFLSNFFWRYMYWFHRSMQKIFVPSQDTMEQLKRRGFTNLHLWPRGVDCSLFHPYYHQREVREKYNIDEKYLLVYVGRIAVEKDVQLLPEIAKRLPESLRDHVHWLMVGDGPLKEEMQQRAPERMTFVGYLQGSDLAKVYAAADLFVFPSATETFGNVVLESLASGTAVIGANSGGVKSIMQHGAFGYLCEPRAIDEFAAAIVRFLSNDTQRKQMELAGRAYALTQNWEVIFENLISEYEKVWRHHAERLHA
>NZ_CP015436.1|WP_044741893.1|1345895_1346420_-|phosphatase-PAP2-family-protein
MTKLLQQAYTLECRMFRTINRYFDYEWLNIYFRLVTHVGGATFSIVAVLLAMIFFEQEWRMTAVASACALAASHIPVAVMKRLYPRPRPYVVLSEAKVYGPLKDHSFPSGHTTAVFAIVIPFVFALPVLSFGLLPIAFSVAISRIYLGLHYPSDVLAGCLLGTAAGAFAFYLLL
>NZ_CP015436.1|WP_156487498.1|1346619_1346778_-|hypothetical-protein
MKAKQALLLKVGASLLTIMLLGACNNEEDQPDNGTNQIEETDENTEQSEDNQ
>NZ_CP015436.1|WP_080862588.1|1347175_1347295_+|YhfH-family-protein
MLTFHPLPPKQCQECGEEIVEQRESYLYECEKCMSQQEE
>NZ_CP015436.1|WP_156487497.1|1347801_1347954_-|hypothetical-protein
MKFIKESAFDLTYKESNSLLPVCFEIVDGLGCLFAFGEMGNEKSICYRGH
>NZ_CP015436.1|WP_156487496.1|1348462_1349251_-|IS3-family-transposase
MSKWVLCLAETTNECPETKKTDDGKRIHIESRPLYGSPKITKMLQQEGIPISQKTVARWMKEEGIRSKTKKKHKPASSSPHQLPNLSQPAGTTVSCRKAQSNMGADITYIWTAEGWLYLASIMDLFSRRMVGWAISERMNRQLGMRALERAVQKRQPPLGLIHHSDQGSQYASHDYQAMLRKYGMKTSMSRKGNCYDNACIESFHGVIKKERIYQTRYKTREEAKKSIFEYIEIFYNNKRIHSATEYFSPSEYERMDYKKGA
>NZ_CP015436.1|WP_044741891.1|1349324_1349606_-|transposase
MGKRFDKEFKLHAVKLVVEEGSTIAETARQLDLSPKTLHRWVSDYKENPVHSFVGSENLRPEEQALREAQKRIRDLEEENAILKKAMSLFAKN
>NZ_CP015436.1|WP_082063469.1|1351819_1353157_-|MFS-transporter
MSVNTETTVQQTSPLALSISRKQMMIAVMASLLGWSLDLYDLFILLYVAPELGKLFFPTDKPTLSLAAVYASFAVTLCMRPLGSALFGTYADRNGRKRAMVVAVSGVGISTALLGALPTVAQIGAAAAIIFIVLRLIQGVFVGGVVASTHTIGTESVPEKWRGLMSGLVGGGGAALGALLASIVYFVLSNIFSGPEFSEWGWRFMFFTGILSSVLGLFVFKKLEESPLWVQHKKTQEAKQENQQSPVKMVFTKYLSVLLINLMIVIGGGSAYYLTCGYLPTFLKVINNIPQTVSSMILMISSISAMIASVALGHLSTIIGRKKTFILLGIVNLIVLPYLYTELAAAQDLTLITLYAMGLAFLGNGSYAPVLIFLNERFPTAIRSTGTGLSWNMGFAVGGMMPTFVTMASSQTSDIPLSLTYFSIALFLLYLLGSFIIPETKGNFK
>NZ_CP015436.1|WP_044741889.1|1353256_1354045_-|crotonase
MEAVKQYDHIRVEKNQEKKTATIVFDRPEKMNYISMLARSQFSEIFDKLNKDDDVRVIIIKGEGTQAFSAGGNIPEFMEVHPEELSHLAVNVAAPERSPKPVIAQLQGYTFGVGLEIAMACDFRIAADDTLLALPEMNLGMIPGSGGTQRVAKIAGLTRAKDMIMRARRIPADEAYQWGLITKVVPKADLENEVNALADELMKFSPLALKVCKQVLNAAYETPLSAGLEIEGKAYGLLRTTEDFREGVAAFVEKRKPNFKGK
>NZ_CP015436.1|WP_044741904.1|1354077_1355634_-|AMP-binding-protein
MNLVTIFDFAVERFPNRVAVVEGDRRYTYRQFHKEVTKVASSLQKIGIKQHDRVMILLKNRFENPIIYWALQKIGAVYTPINFRLAVKEVEYCVNDAEATAVVYESASQESVLKANFQQRPILIGVGEVEGADIYYNELVDRSPESFEKPLINDDDVAIMLYTSGTTGKPKGVPRTHKNEYSAALAHIIQNQYQDGESTLGTMPLYHTMGMRSLLSIMFLNGKYVILPDFDAKEALELLEREEITSLYLVPTLYHDILNHEEFHNYDLSKLKKIGYAGAPMTTALTEKCVKMLKPEVFVNHYGSTEIYTFTINPNVAEKPGCAGKPGLHQNIRIVKADPNGNSTPEDIVEKGEIGEIIVNIESPESFKGYWNRPDATKKAIRDSWYFTGDLGMLDEDGDLYVVGRVDDMIISGGENIHPIEVEDVLSKHPKVHEVAVIGEEDERWGQIVAAYVVPKDPSLTSQELDHYCKNNTTLSNFKRPRKYVFIKEIPKSPVGKILRRNIRNGEFELYINEKVVY

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Crispr_ID: NZ_CP015436_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015436_5

1364442-1365142

Unclear

Consensus_repeat	Method
GTTTTTATCTTAACTATGAGGGATTGAAAC	PILER-CR
GTTTCAATCCCTCATAGTTAAGATAAAAAC	CRISPRCasFinder
GTTTCAATCCCTCATAGTTAAGATAAAAAC	CRT

10 spacers

cas3

The CRISPR arrays of NZ_CP015436_5

>merge|NZ_CP015436|5|1364442-1365142|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATCCCTCATAGTTAAGATAAAAACGGTGTGTCCCACCTCTCGCATGTTGTCATCAAAGTACCGTTTCAATCCCTCATGGTTAAGATAAAAACGTCGATGGGTGATCATTCCCCCTTGGTATGAAGGGTGTTTCAATCCCTCATAGTTAAGATAAAAACGCGCTGTGATCTAAAATAGCTTGTAACACGCTATGCAGTTTCAATCCCTCATAGTTAAGATAAAAACATGAACTTTGATTTTGATAGGGAAACAAAAGAATTGTTGTTTCAATCCCTCATAGTTAAGATAAAAACATGTTTGTCCATCCCCTTGTCATAGTTTTGAAATGAGTTTCAATCCCTCATAGTTAAGATAAAAACGGAAAAAGACTTCGCGCCGTTGGATGGAATCAAATCGGTTTCAATCCCTCATAGTTAAGATAAAAACTCAGTGCTTCCAAGAAAAAGGAAGGAACAAAAACGCGTTTCAATCCCTCATAGTTAAGATAAAAACGCACACGACATTATACGTGTCGTGGCACTGCAAAACCCGTTTCAATCCCTCATAGTTAAGATAAAAACTATTACTGTTGGCATTTATGTTCACCTCCTACATGTTGGTTTCAATCCCTCATAGTTAAGATAAAAACAACCGGCCGTCATCAAGTCAAACGCTTCTTCTGCTGAGTTTCAATCCCTCATAGTTAAGATAAAAAC

>NZ_CP015436|5|5|1364442-1365142|PILER-CR
GTTTCAATCCCTCATAGTTAAGATAAAAAC	GGTGTGTCCCACCTCTCGCATGTTGTCATCAAAGTACC
GTTTCAATCCCTCATGGTTAAGATAAAAAC	GTCGATGGGTGATCATTCCCCCTTGGTATGAAGGGT
GTTTCAATCCCTCATAGTTAAGATAAAAAC	GCGCTGTGATCTAAAATAGCTTGTAACACGCTATGCA
GTTTCAATCCCTCATAGTTAAGATAAAAAC	ATGAACTTTGATTTTGATAGGGAAACAAAAGAATTGTT
GTTTCAATCCCTCATAGTTAAGATAAAAAC	ATGTTTGTCCATCCCCTTGTCATAGTTTTGAAATGA
GTTTCAATCCCTCATAGTTAAGATAAAAAC	GGAAAAAGACTTCGCGCCGTTGGATGGAATCAAATCG
GTTTCAATCCCTCATAGTTAAGATAAAAAC	TCAGTGCTTCCAAGAAAAAGGAAGGAACAAAAACGC
GTTTCAATCCCTCATAGTTAAGATAAAAAC	GCACACGACATTATACGTGTCGTGGCACTGCAAAACCC
GTTTCAATCCCTCATAGTTAAGATAAAAAC	TATTACTGTTGGCATTTATGTTCACCTCCTACATGTTG
GTTTCAATCCCTCATAGTTAAGATAAAAAC	AACCGGCCGTCATCAAGTCAAACGCTTCTTCTGCTGA
GTTTCAATCCCTCATAGTTAAGATAAAAAC

>NZ_CP015436|5|5|1364442-1365142|CRISPRCasFinder
GTTTCAATCCCTCATAGTTAAGATAAAAAC	GGTGTGTCCCACCTCTCGCATGTTGTCATCAAAGTACC
GTTTCAATCCCTCATGGTTAAGATAAAAAC	GTCGATGGGTGATCATTCCCCCTTGGTATGAAGGGT
GTTTCAATCCCTCATAGTTAAGATAAAAAC	GCGCTGTGATCTAAAATAGCTTGTAACACGCTATGCA
GTTTCAATCCCTCATAGTTAAGATAAAAAC	ATGAACTTTGATTTTGATAGGGAAACAAAAGAATTGTT
GTTTCAATCCCTCATAGTTAAGATAAAAAC	ATGTTTGTCCATCCCCTTGTCATAGTTTTGAAATGA
GTTTCAATCCCTCATAGTTAAGATAAAAAC	GGAAAAAGACTTCGCGCCGTTGGATGGAATCAAATCG
GTTTCAATCCCTCATAGTTAAGATAAAAAC	TCAGTGCTTCCAAGAAAAAGGAAGGAACAAAAACGC
GTTTCAATCCCTCATAGTTAAGATAAAAAC	GCACACGACATTATACGTGTCGTGGCACTGCAAAACCC
GTTTCAATCCCTCATAGTTAAGATAAAAAC	TATTACTGTTGGCATTTATGTTCACCTCCTACATGTTG
GTTTCAATCCCTCATAGTTAAGATAAAAAC	AACCGGCCGTCATCAAGTCAAACGCTTCTTCTGCTGA
GTTTCAATCCCTCATAGTTAAGATAAAAAC

>NZ_CP015436|5|5|1364442-1365142|CRT
GTTTCAATCCCTCATAGTTAAGATAAAAAC	GGTGTGTCCCACCTCTCGCATGTTGTCATCAAAGTACC
GTTTCAATCCCTCATGGTTAAGATAAAAAC	GTCGATGGGTGATCATTCCCCCTTGGTATGAAGGGT
GTTTCAATCCCTCATAGTTAAGATAAAAAC	GCGCTGTGATCTAAAATAGCTTGTAACACGCTATGCA
GTTTCAATCCCTCATAGTTAAGATAAAAAC	ATGAACTTTGATTTTGATAGGGAAACAAAAGAATTGTT
GTTTCAATCCCTCATAGTTAAGATAAAAAC	ATGTTTGTCCATCCCCTTGTCATAGTTTTGAAATGA
GTTTCAATCCCTCATAGTTAAGATAAAAAC	GGAAAAAGACTTCGCGCCGTTGGATGGAATCAAATCG
GTTTCAATCCCTCATAGTTAAGATAAAAAC	TCAGTGCTTCCAAGAAAAAGGAAGGAACAAAAACGC
GTTTCAATCCCTCATAGTTAAGATAAAAAC	GCACACGACATTATACGTGTCGTGGCACTGCAAAACCC
GTTTCAATCCCTCATAGTTAAGATAAAAAC	TATTACTGTTGGCATTTATGTTCACCTCCTACATGTTG
GTTTCAATCCCTCATAGTTAAGATAAAAAC	AACCGGCCGTCATCAAGTCAAACGCTTCTTCTGCTGA
GTTTCAATCCCTCATAGTTAAGATAAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015436.1\|WP_044741885.1\|1357489_1359907_-\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NZ_CP015436.1\|WP_044741882.1\|1361620_1362388_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|227095
NZ_CP015436.1\|WP_044741981.1\|1375068_1377207_-\|DEAD/DEAH-box-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224122
NZ_CP015436.1\|WP_044741980.1\|1377209_1378538_-\|biotin-carboxylase	unknown	unknown	gnl\|CDD\|378508
NZ_CP015436.1\|WP_044741986.1\|1370416_1371163_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044741883.1\|1360532_1361624_-\|XdhC-family-protein	unknown	unknown	gnl\|CDD\|379212
NZ_CP015436.1\|WP_044741987.1\|1363793_1364204_+\|HicB-family-protein	unknown	unknown	gnl\|CDD\|374224
NZ_CP015436.1\|WP_044741984.1\|1372646_1373663_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370769
NZ_CP015436.1\|WP_156487495.1\|1373932_1374340_+\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376187
NZ_CP015436.1\|WP_052660919.1\|1371159_1372659_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NZ_CP015436.1\|WP_082063499.1\|1381957_1382122_-\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP015436.1\|WP_044741988.1\|1363575_1363767_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|377942
NZ_CP015436.1\|WP_044741979.1\|1378538_1381112_-\|NINE-protein	unknown	unknown	gnl\|CDD\|379075
NZ_CP015436.1\|WP_052660920.1\|1366020_1370433_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NZ_CP015436.1\|WP_044741904.1\|1354077_1355634_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341247
NZ_CP015436.1\|WP_044741982.1\|1374329_1374740_+\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|366864
NZ_CP015436.1\|WP_044741884.1\|1359887_1360511_-\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|133025
NZ_CP015436.1\|WP_044741887.1\|1356129_1357008_-\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NZ_CP015436.1\|WP_052660917.1\|1357037_1357493_-\|carbon-monoxide-dehydrogenase-subunit-G	unknown	unknown	gnl\|CDD\|176853
NZ_CP015436.1\|WP_044741888.1\|1355638_1356133_-\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991

Protein	Function_ID	Function_description	E-value
NZ_CP015436.1\|WP_044741885.1\|1357489_1359907_-\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NZ_CP015436.1\|WP_044741882.1\|1361620_1362388_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|227095	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms].	2.58812e-34
NZ_CP015436.1\|WP_044741981.1\|1375068_1377207_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|224122	COG1201, Lhr, Lhr-like helicases [General function prediction only].	1.27515e-109
NZ_CP015436.1\|WP_044741980.1\|1377209_1378538_-\|biotin-carboxylase	gnl\|CDD\|378508	pfam10923, DUF2791, P-loop Domain of unknown function (DUF2791). This is a family of proteins found in archaea and bacteria. This domain contains a P-loop motif suggesting it binds to a nucleotide such as ATP.	0
NZ_CP015436.1\|WP_082063499.1\|1381957_1382122_-\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	1.26098e-06
NZ_CP015436.1\|WP_044741883.1\|1360532_1361624_-\|XdhC-family-protein	gnl\|CDD\|379212	pfam13478, XdhC_C, XdhC Rossmann domain. This entry is the rossmann domain found in the Xanthine dehydrogenase accessory protein.	2.58159e-51
NZ_CP015436.1\|WP_044741987.1\|1363793_1364204_+\|HicB-family-protein	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	3.25049e-20
NZ_CP015436.1\|WP_044741984.1\|1372646_1373663_-\|hypothetical-protein	gnl\|CDD\|370769	pfam09983, DUF2220, Uncharacterized protein conserved in bacteria C-term(DUF2220). This domain, found in various hypothetical bacterial proteins, has no known function. The family represents just the C-terminus.	4.99954e-09
NZ_CP015436.1\|WP_156487495.1\|1373932_1374340_+\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|376187	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase. A member of the nucleotidyltransferase fold found in polymorphic toxins (NTox45) and polyvalent proteins.	3.65692e-26
NZ_CP015436.1\|WP_052660919.1\|1371159_1372659_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0.00112846
NZ_CP015436.1\|WP_044741988.1\|1363575_1363767_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	1.25402e-21
NZ_CP015436.1\|WP_044741979.1\|1378538_1381112_-\|NINE-protein	gnl\|CDD\|379075	pfam13208, TerB_N, TerB N-terminal domain. The TerB_N domain is found N-terminal to TerB, and TerB_C containing proteins. It has a predominantly alpha-helical structure and contains an absolutely conserved glutamate. The presence of a conserved acidic residue suggests that it might chelate metal like TerB. These proteins occur in a two-gene operon containing an AAA+ ATPase and SF-II DNA helicase suggesting a role in stress-response or phage defense.	2.14757e-21
NZ_CP015436.1\|WP_052660920.1\|1366020_1370433_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	8.13918e-22
NZ_CP015436.1\|WP_044741904.1\|1354077_1355634_-\|AMP-binding-protein	gnl\|CDD\|341247	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL). CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions.	2.54864e-165
NZ_CP015436.1\|WP_044741982.1\|1374329_1374740_+\|DUF86-domain-containing-protein	gnl\|CDD\|366864	pfam01934, DUF86, Protein of unknown function DUF86. The function of members of this family is unknown.	1.69726e-27
NZ_CP015436.1\|WP_044741884.1\|1359887_1360511_-\|nucleotidyltransferase-family-protein	gnl\|CDD\|133025	cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	1.02983e-70
NZ_CP015436.1\|WP_044741887.1\|1356129_1357008_-\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	9.60341e-72
NZ_CP015436.1\|WP_052660917.1\|1357037_1357493_-\|carbon-monoxide-dehydrogenase-subunit-G	gnl\|CDD\|176853	cd05018, CoxG, Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	1.03018e-53
NZ_CP015436.1\|WP_044741888.1\|1355638_1356133_-\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.50301e-69

>NZ_CP015436.1|WP_044741987.1|1363793_1364204_+|HicB-family-protein
MNKKDRYIYPAVFDYANDGISVEFPDLPGCFTCGDTEEEAFQMAKEALALHLYGLEQENEEIPQPSKVSEIQTETHQVVVFIEVWMPPFRHEMENKAVKKTLTIPKWLDDLAKQYNVNYSQILQEALKKHLGATDR
>NZ_CP015436.1|WP_044741988.1|1363575_1363767_+|type-II-toxin-antitoxin-system-HicA-family-toxin
MKSYSSKELIKMIQQDGWYIVRTTGSHHQFKHPSKPGLVTIPHPKKDLPTKTIKSILKQAGLL
>NZ_CP015436.1|WP_044741882.1|1361620_1362388_-|helix-turn-helix-domain-containing-protein
MAEILIVDDDKHARTEIRTFIEESKFRFLTIYEANTAQRGMILLKQNRPSVLILDISLPDMDGIRFGRSALQLYSDLPVIVVTQLKMFEFVQEAINSGFSAYLLKPLSRNELYETLERILPMGLNREITQTINGNRNFSSDLKNPIESAIQFIQMNYGYPLTLKEVADHVYLSPSYFSRLFKEEVGMTFVEYLSFVRVQKAKSLLRFSSLPIEAIAHNTGFSNPGYFATTFKKIVGKTPSEYREQFYFQEKGVKS
>NZ_CP015436.1|WP_044741883.1|1360532_1361624_-|XdhC-family-protein
MIAIKKELERCKKEGLSGVLGTIISTEGSTYQKAGAKCFISEDRKLTGLLSGGCVESDIIEHAMKVLETGKPTVIHYDFYGDDDIVWGLGVGCNGKMNIFLQPYLPIKQPEKAAIIDRYFSDSLQKTLHTVTIVKAKDESLQGKMWIIDSAFDNSDIPISVWEIAVDYMMRKKDLKNEMVYLGGEQDLYVYYESTSPPPHLIVFGAGPDAIPLVKMAKNLKWLVTVLDYRSSYCNEENFPEADFIHVYPAGSVPNVSLHENSYVVIMTHNFLHDREILESILNSNAAYIGLLGPRKRTDRLIATSNTLLSNENVYRIHSPIGLDIGAKTPEEIALSILSEIMMVYRGGTGRKLSQLASMAHSV
>NZ_CP015436.1|WP_044741884.1|1359887_1360511_-|nucleotidyltransferase-family-protein
MRKNLWGIILASGFSKRMGKPKLLLPYKGKPIIRHVIDESMESRLSGVVVVVNPEVAELRNEVSRSCVSKLVLNEQAGQGMSTSLKAGLMNLPLTADAAVVLLGDQPLVSSEDIDAVIKCYESNGGPLIVQASYQSKRGHPVLFDCSMFPHLFNLTGDEGARSVLKMFSNKICFARIDKPFPSDIDTPEDYEQLLRKEVKLNGQSDW
>NZ_CP015436.1|WP_044741885.1|1357489_1359907_-|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MGKVIGKRVTRVEDKRLLTGKGKYIDDIGTPPNTAHVAILRSPHPHAKIISIDYSEALEIPGVKSVVTGKDVQPLLNPFSVGVSAPVKYYPIAIDKVRYVGEPVAVVVAKNRYIAEDALEKIKVKYETLEPVVDIERALEDGVPILHENVGSNIANHRTFHYGDVDKAFQQADKIIKHRFHFPKYSATPVETYGIIAQYDESTDSYTVHANFHGPFVLHSIMAGALKVPSNRLRIIIPKDIGGSYGIKAGIYPYIVLCSVVSRLVGCPVKWIEDRQEHLAASSSCTDRVTYIEAAVKNDGKVLGLKMKIKDNVGAYIRAPEPACLYRNHANTTGAYDIPNLMIDAYAVMTNKLPTGLIRGYGGQETYFPLERTMQMIADELGMDPADVIRRNLIKKEQFPYKTASGGVYDSGDYEKAFDLLLKTGKYEEFRKKQMEARKKGKLLGVGLAVIVEPSGSNMGYITIALTPEERKAGLPKSGCTEAATISIDPMGNVNVRISTTPTGQGHETVAAQIVSEILGIPHDKINVVAELDTATSAWSIASGSYSSRFASMGSSAVYYAVQKVKRKLIKIAAHLLQIDEEGLTIKNSQIISKTDPSKSISLKRVAGSAHWNPLSLPKGMEPGIYETAYYTAQAEPPDDNDLINSSITYGFVADLVTVEIDTETGEIHILDYYTVHDAGKLLNPLIVDGQILGGLVHGLGGAMYEELVYDDKGQFLTGSFMDYLCPTATEIPRVTIKHIETPSPITPLGAKGLGEGNTMSAPVVIANAVNDALKPYGVIIDSLPITPNKVWNLINQSTKQEELT
>NZ_CP015436.1|WP_052660917.1|1357037_1357493_-|carbon-monoxide-dehydrogenase-subunit-G
MNGSGKVALNAGIEKAWDVLLDPQALKNCIMGCTKLEPVGENKYEAVLSIGIAAVKGKYESTIEIADIQKPNHYKLIVKGEGGPGSVEATGVVDLVPIDENTTELRYTYDAEVGGKVAMVGQRMLNGVAKLIIQDFFKKFNKELAKSEQSV
>NZ_CP015436.1|WP_044741887.1|1356129_1357008_-|xanthine-dehydrogenase-family-protein-subunit-M
MKPAKFDYYCPKTVAEALSLLEEIGFDSKIIAGGQSLVPIMNMRLSTPEYLIDINQLKDLQFIEFDGSKMKIGALTRQAEMEMSGAVRKHLGLLSEAVPYIGHVQTRNRGTFGGSLVHADPSAEIPLSLMALGGTLRIASKDEVREVNVENFFVTYLTTDIMPNELLTEIHVPVPEGRIGYSFHEISRRHGDFALVAAACQLSIDSQDRISKVRLVLGGVDAVPLLITEASELMEGELLSDPLLNKIVDIVEEAVNPESDLHATADYRKTLAKKLAVRTVKTAYERARGENK
>NZ_CP015436.1|WP_044741888.1|1355638_1356133_-|(2Fe-2S)-binding-protein
MSVHEIEVTINGKKYQEQVESRMLLSDFLREMCGLTGTHVGCEHGVCGACTIHLNGSAVRSCLIFAVQVDGQEITTVEDLAKDGELTLLQRNFIECHGLQCGFCTPGILMSTTDYLQKNPNPTLQEIKEMLSGHLCRCTGYEGIIKAIQKTIDENNHNYDVERG
>NZ_CP015436.1|WP_044741904.1|1354077_1355634_-|AMP-binding-protein
MNLVTIFDFAVERFPNRVAVVEGDRRYTYRQFHKEVTKVASSLQKIGIKQHDRVMILLKNRFENPIIYWALQKIGAVYTPINFRLAVKEVEYCVNDAEATAVVYESASQESVLKANFQQRPILIGVGEVEGADIYYNELVDRSPESFEKPLINDDDVAIMLYTSGTTGKPKGVPRTHKNEYSAALAHIIQNQYQDGESTLGTMPLYHTMGMRSLLSIMFLNGKYVILPDFDAKEALELLEREEITSLYLVPTLYHDILNHEEFHNYDLSKLKKIGYAGAPMTTALTEKCVKMLKPEVFVNHYGSTEIYTFTINPNVAEKPGCAGKPGLHQNIRIVKADPNGNSTPEDIVEKGEIGEIIVNIESPESFKGYWNRPDATKKAIRDSWYFTGDLGMLDEDGDLYVVGRVDDMIISGGENIHPIEVEDVLSKHPKVHEVAVIGEEDERWGQIVAAYVVPKDPSLTSQELDHYCKNNTTLSNFKRPRKYVFIKEIPKSPVGKILRRNIRNGEFELYINEKVVY
>NZ_CP015436.1|WP_052660920.1|1366020_1370433_-|hypothetical-protein
MPAISKIRLTNVVYEEGRKRYNDEIFRFDGHNGAILLENGGGKTVFIQTVLQAILPHVDVADRKIKNTLQFENAPAHIAIEWMLNDEPRRYVVTTVSLFMTNNGLDSLRYVYEYNANDPHGIEGLPFVREGKDGKRPAERGEMQDYYSHMKEKTFLARTFSTIKEYKAFIEEQYHIISSEWESVVKINSSEGGVEAFFDECKSTNQLFDRLLIPIVESAIVGHDAKLFADMFEKQHASFKHYKKLKETIEENKLIQRELERYVETYEQLHREELAYLKAKQRAKGVWLETLKQKQACLDEQKDIADKLEYWKLNYAAHNKKRATYDILVEEARWRELQREYELVLAWQKEKEEARTRLERDYYSLQLAERKEERKRHEEALAYIEQELAKLKDDEKLANYEEEWETARRSLLGYFMKKLEDIDNDERSLRYELNPIQAQLEQWTKEKEACERQKLDTREKRAAIKSLIDARENDMEQIKQRILANPSQQSVEEEMAKWIERERWLDEEIVRLRQDVKQFSQAEQEAEAKKEALQQQWAAKHAERQALVQQFKALENEEQALIRKLASLRPQWAALDGVYAHEATIGMRLQEEIEKRAKDREELLVRERIASRLADAYGGQDIFFADPFLAQQLASWKNQFDYVATGVEYLQSLEEEDCAKKRAFPLWPMALITTAKSKERLSQKVQYLYDRLQLPIVVLTADEAARIEDEVLSYEWIAPRYWEEASDPELFRAWKERINASARDMTLRRQEKEAELKLWQDVQQAWRAFLEAHSYKTVEAARTQYAALNSGIEQLKIAVDKEKARIDEWRAKIAHAQSLIHQYEQEMKGWRDKIEDANKYIQYEKEVQEARKTEKTLNEKIAALEKDIVRLNERLEDALAQKADLEESIRSLQADRRYIERSDDYQSLRSFTPLYSGASERVIRDKIRKLEDRMNGIETTYREWKLRQETEQREIDRLTNEINKLKRQYPDLDETRSFPSDGPYVLQRLEEQIVSLQSELKRLNKDVQDALIRKEQQSGVLKTKEQQFQQQYPNEECWPFTEPLYEIADHLKTEKEELEKRKAFLDQEHERLAKKMKSIEQAERHLELSKEVHHFNAPTIDALSLSAEEATAFTYGHQRFIEGITESLKAGRQAVEETKSRVERAKRSFREFCNSLIKDMKMRQMALNGIEHKETYEDIIDFKKNMMRSVESATNYANEHIRQKDAELQAFINHIHTHLRTLVEELKQIPNKTRVKVGDEWKRIFTFTIPEWEEEVGKTRIRNHIEWILQQLESERFMNEHGQQDEAKVRKEIEMWLQSKQLLQVVMNNEGMKVNCRKVMNDNQVTMRSYSWEQSNVWSGGEKWSKNMTLFLGILNYVAEKKQHIQPTMKRHRTVILDNPFGKASSDHVLNPVFFIAEQLGFQIIALTAHAEGKFLRDYFPIIYSCRLRPSSDPNKQVMTKEKWLHYAYFQDHEPKSLERLGETEQLELF
>NZ_CP015436.1|WP_044741986.1|1370416_1371163_-|hypothetical-protein
MRNYPEQKVIQAFQLYTVLASHGVAGEQAVQLYKSDDDIRGLLDIFSREVDCVIILTSEEMFLVPRTKLSPFHVSNDWIKRHYLRSGATNGDLYLLYFTVLVLFGSFYDTYQSQEPTRQFLGMDEWVHLVQERIDQLKQHDPDELKQLEQEFSYNWRLIIEKWDAMDDIKETAKKQSGNTISRLSFIDTARRFLIDQDLILDIGNHEVALTEKAKTIVQRFFMEVEYNRGIFEFIYGFEREKDDASDQ
>NZ_CP015436.1|WP_052660919.1|1371159_1372659_-|hypothetical-protein
MDKLELAGVTDGYRERIRRLALFDPLFDLERKRSTDLNGQPIDMKGLGLLALLFFFEQKLMRQYKTGVKQLASFLKKLTENVYVLDDEMYEDLARTIIQTFRPTTGRKRSYSFYDWEKREESAIDYSLLKANDFDVKTNTQYYTLDEDGLELVFATKEFYSEFQLSINQLMLRKQLEKGEFAAALKQINEMRIDVETLEERMTRLKHEIQRSIISEETFERYKQLLDDIYSRLSREDEEFKELREFVNETRERLYARDVHQKEARTYELVLKIAWELESVHYAHSALLDKALSLKNTTLVTAQESLYYTGLHSFNFDQDIVSYVVSTPLPLEAMKGLLHPFLKVEENQFWSPLAIFAEQNITEERGEKVGLRFIEADDAVCDDPYRTWLMAKYKELMQLFLEAYQLGRAQTLSEFFSYLDDIGQSRLYEQRYFYDFWLIMHQHSPVQHGDMKGEEGNTLLGDALVLLGGNVLDVQEGDRIIRKCERFSIQDMMITVREQ
>NZ_CP015436.1|WP_044741984.1|1372646_1373663_-|hypothetical-protein
MEQIERLLAAFPKRTISLGELEQLIQPFARTYDEFCEIVLRLEAERVLEMVKAKGRTTRTPSLAFQYRIHKSRFMEDYHRELQRYQNRLHPAIQLDAYYGKDPSVWEQDKPFILKIDDYLKTHSLPNEAVAAPERSVELVGDEKWITERGGKELLERIVLFDRLRIIPVSEPLMLAVNPAKIAEAVQHHLIVENKTTYQALLPALPDTAFSTLIYGEGKAVISSIEQFSLQYPVKAHHRFYYFGDIDREGISIWHSLAKKQPVSPSLPFYRACLRKDPVSGKGYQMERADVLDAFLAYFSADEKKQLQELLASGQYYPQEMLKTRELQQIWREWQWTS
>NZ_CP015436.1|WP_156487495.1|1373932_1374340_+|nucleotidyltransferase-domain-containing-protein
MTEQIEPIIIEVLTETVSPYLIYLFGSTVTGHVHQDSDIDIAFLSDQKQLDHYERFMVAQELASKLHRDVDLVDLKQASTVFQAQVVSNGKVIYCTNEQKKAEYEWRALKMYAKLNEERTEILRNINESGSVYEK
>NZ_CP015436.1|WP_044741982.1|1374329_1374740_+|DUF86-domain-containing-protein
MKNDVILNKISVIERCIKRIHEEYENNPKNLENYTKQDSMILNLQRACEASIDLAMHMVAQKKLGLPQNSRDAFSLLEQHGIITPFLSQKMKAMVGFRNIAVHDYQEINLTILQKILDHHLTDFTEFTKAILFYEQ
>NZ_CP015436.1|WP_044741981.1|1375068_1377207_-|DEAD/DEAH-box-helicase
MSSFDLLSPNMQKKIWEMRWEEFTPIQDKAIPAIIETDDDIIISSGTASGKTEAAFLPILTLIEDTAKQSLKVLYVSPLKALINNQFERIENLCKDIGILIHKWHGDVFQSKKKKFIQNPAGILQITPESIESLFINRTSMIPHIFNELDFIVIDEIHSFLDVERGGQLRSLLARIEKVINKRPRYIGLSATIDNFEFVKQWVNFRNTDRVRIIHEKGYDKELLYHLMHFQCIEPNKKPIELYEDIRELTRESKAIIFCNSREEVEYSTVLLNRLAQKDGEGETYYPHHSSIDKKEREFVEKTIAESTFPKSVIATSSLELGIDIGSIDIVIQVDSTYTVSSLRQRLGRSGRKQGSSSILQLYSTMEDSLVQSLAVMELVLEKWVEPSKGYKQPFDILFHQIISMCQQYNGIKRSQLIQEIKFNDAFHDLDIEDINELLNHMIEREILEQLPVVQELILGVEGERILRSKEFYSVFMTREQYDVFSGTKQIGTLDKKPFINIKDRIILAGKLWEIYDIDSKRNKIYVSKTSQGDPPKYSGDGGKIHQRIGEKMMEIICSDNSFEYIDEKAADCLKEIRIPYHYYEVTPQQRVIWRKKDELVFETYTGTTIFQTLMWMLRTKGVDVKTVDGVGRIKITMPPEEDILKVLDDIKNSNWCPEDVMKGVLEREKFVSKYSFYLPEKLRDKMHIANEVDIENTISYLDSYTFRLIVL
>NZ_CP015436.1|WP_044741980.1|1377209_1378538_-|biotin-carboxylase
MNIKKRDSSAILNALSGGVVPSRGLQYIMVGRAEEAKQILSDLKNIKEGASIIKLFIGPFGSGKSFIQSLIKQIAFNEKFVVANADFTPERRLYGSEGKAVATYTELMKNLSTATSPEGNALPAILDKWISDVQSKIAEDKYNGLVEFDNKEFVKDVQTEITKIVSKMDELTGGYDFSRVLNLYFKGFVEDNNELQRKAIRWLRGEYSTKTEARSDLGVRTIIDDNNYYDYLKVMSQFVKQIGYSGLVINLDEAINLYKITHPQTREKNYETILKIYNDTLQGNVEGLYITIGGTPEFLEDERKGLFSYGALKRRLQTNPFETKEHRDLSQPVIKLTPLTHDETYVLLQKLRDIHAVHHGYETTVTNEEIKSFIRKEYSKPGAEGNLTVGEVIRTFLGALNILQQHTDYNRSELFGVALMNQESTNNSRVTNITSRFSRTGG
>NZ_CP015436.1|WP_044741979.1|1378538_1381112_-|NINE-protein
MKKKVYKNKIVAYVLAFFLGGLGAHLFYLKKPFRAILYLLFSWTGYTFILGWLDMFFISSWVNKLNEKRVESSLDVEGVTYEHVLELSESVASNENTEVHTLRKEKGTSAIAIPTHSYEKKSTDKIHAIPNKPDNKKCTDELGGRIFKKIPFSTEPVKHLTILVNKELEQEQQRSNKQIPTESVLKEKEQLTNSEMEKQQQNNLKEFSSVVSTIKNEHLRCLQAALLELIRFKQELEIKEKIDHSHQQEEVIKTPQKENQELQSQIELDILVDKEEKSSPVAKSQLKDVKNTFIKGIKNMLSGTFYDEETIIMPEFAHVKTPSFVKEMIHNIKGKEQRKTLKNSYIYISVYTGESDFLNDSLHYSQKTGDPKVKFVPFMQYYPTFRSLDDNQKNWYFYWREEVLKGRYIDTDLSYIYLFAYELINYTFNQKTSFNVSMLVHLYNNYKERFPSLSRYLPEWIGHMLLEAGEKELASNWIRERTSNRYYEEFKKTLIETEDWSKISISIWKKYLRNHRETAFFTQNKNRIYNIFKSGIQLLREYYEEHGISIVDEWLVENIKQQPMFLFQGAVVHREERNTEITMNVLVPSEKLFDQVTALFKYSENIMRLLKENNRMVKVDEEVLPEEFRENMKQIFLNKDGIGSRFKVVQKGTMNSGSKIPDPPKDISQKQDIVSSGEQIQDLETVIEFDDDKIKQLEEENRLLLQHFEQYEDGDEHSISTTVENNVSAVLADENVNDNIPNSEKSDKEHESDVFFGSSDSFSLNFLSSSDGEASEFIHSLSELEKFLLKHFTGDSIQVSEAKQLMKSKGVMINVVIDNINEKAMDILGDKFIELEGERYVIYEEYIEVLNELKESV
>NZ_CP015436.1|WP_082063499.1|1381957_1382122_-|transposase
MTKKQRRYEEDFKRQTVRYILEEAKSVAQVARELKINENTLHGWVKNIQYKLAF

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Crispr_ID: NZ_CP015436_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015436_6

1382230-1382861

Unclear

Consensus_repeat	Method
GTTTTTATCTTAACTATGAGGGATTGAAAC	PILER-CR
GTTTCAATCCCTCATAGTTAAGATAAAAAC	CRISPRCasFinder
GTTTCAATCCCTCATAGTTAAGATAAAAAC	CRT

9 spacers

cas3

The CRISPR arrays of NZ_CP015436_6

>merge|NZ_CP015436|6|1382230-1382861|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATCCCTCATAGTTAAGATAAAAACAAAAATGCTGTAAATTATTCAGAATTAATCGAAGTATGTTTCAATCCCTCATAGTTAAGATAAAAACGGGATAAACGAAAGAAGAAGTGAAAACGAATACCGAGTTTCAATCCCTCATAGTTAAGATAAAAACAACATGTGTATGTCGTTGAGGATGACGGTTTCTGGTTGTTTCAATCCCTCATAGTTAAGATAAAAACCGGCAGGAATGAAATACATCTTGGCTAAATTCAAAAGTTTCAATCCCTCATAGTTAAGATAAAAACCCTTGCCGAACCAGAACGTGCTAAACGGCGACATTATGTTTCAATCCCTCATAGTTAAGATAAAAACGCGTTGAATGCAACCCCGGAATGAACAAACACACCAGTTTCAATCCCTCATAGTTAAGATAAAAACTTTTTTATGAAGATCGTGTTGTTTTACCAACAACGAAGTTTCAATCCCTCATAGTTAAGATAAAAACTTACAACTGTGGATGGATCTGAAGGGTCGGTGATCAAGTTTCAATCCCTCATAGTTAAGATAAAAACCAGGTCTACGTTAAGAGCGGAGTTTCTAGAGCATTTAGAGTTTCAATCCCTCATAGTTAAGATAAAAAC

>NZ_CP015436|6|6|1382230-1382861|PILER-CR
GTTTCAATCCCTCATAGTTAAGATAAAAAC	AAAAATGCTGTAAATTATTCAGAATTAATCGAAGTAT
GTTTCAATCCCTCATAGTTAAGATAAAAAC	GGGATAAACGAAAGAAGAAGTGAAAACGAATACCGA
GTTTCAATCCCTCATAGTTAAGATAAAAAC	AACATGTGTATGTCGTTGAGGATGACGGTTTCTGGTT
GTTTCAATCCCTCATAGTTAAGATAAAAAC	CGGCAGGAATGAAATACATCTTGGCTAAATTCAAAA
GTTTCAATCCCTCATAGTTAAGATAAAAAC	CCTTGCCGAACCAGAACGTGCTAAACGGCGACATTAT
GTTTCAATCCCTCATAGTTAAGATAAAAAC	GCGTTGAATGCAACCCCGGAATGAACAAACACACCA
GTTTCAATCCCTCATAGTTAAGATAAAAAC	TTTTTTATGAAGATCGTGTTGTTTTACCAACAACGAA
GTTTCAATCCCTCATAGTTAAGATAAAAAC	TTACAACTGTGGATGGATCTGAAGGGTCGGTGATCAA
GTTTCAATCCCTCATAGTTAAGATAAAAAC	CAGGTCTACGTTAAGAGCGGAGTTTCTAGAGCATTTAGA
GTTTCAATCCCTCATAGTTAAGATAAAAAC

>NZ_CP015436|6|6|1382230-1382861|CRISPRCasFinder
GTTTCAATCCCTCATAGTTAAGATAAAAAC	AAAAATGCTGTAAATTATTCAGAATTAATCGAAGTAT
GTTTCAATCCCTCATAGTTAAGATAAAAAC	GGGATAAACGAAAGAAGAAGTGAAAACGAATACCGA
GTTTCAATCCCTCATAGTTAAGATAAAAAC	AACATGTGTATGTCGTTGAGGATGACGGTTTCTGGTT
GTTTCAATCCCTCATAGTTAAGATAAAAAC	CGGCAGGAATGAAATACATCTTGGCTAAATTCAAAA
GTTTCAATCCCTCATAGTTAAGATAAAAAC	CCTTGCCGAACCAGAACGTGCTAAACGGCGACATTAT
GTTTCAATCCCTCATAGTTAAGATAAAAAC	GCGTTGAATGCAACCCCGGAATGAACAAACACACCA
GTTTCAATCCCTCATAGTTAAGATAAAAAC	TTTTTTATGAAGATCGTGTTGTTTTACCAACAACGAA
GTTTCAATCCCTCATAGTTAAGATAAAAAC	TTACAACTGTGGATGGATCTGAAGGGTCGGTGATCAA
GTTTCAATCCCTCATAGTTAAGATAAAAAC	CAGGTCTACGTTAAGAGCGGAGTTTCTAGAGCATTTAGA
GTTTCAATCCCTCATAGTTAAGATAAAAAC

>NZ_CP015436|6|6|1382230-1382861|CRT
GTTTCAATCCCTCATAGTTAAGATAAAAAC	AAAAATGCTGTAAATTATTCAGAATTAATCGAAGTAT
GTTTCAATCCCTCATAGTTAAGATAAAAAC	GGGATAAACGAAAGAAGAAGTGAAAACGAATACCGA
GTTTCAATCCCTCATAGTTAAGATAAAAAC	AACATGTGTATGTCGTTGAGGATGACGGTTTCTGGTT
GTTTCAATCCCTCATAGTTAAGATAAAAAC	CGGCAGGAATGAAATACATCTTGGCTAAATTCAAAA
GTTTCAATCCCTCATAGTTAAGATAAAAAC	CCTTGCCGAACCAGAACGTGCTAAACGGCGACATTAT
GTTTCAATCCCTCATAGTTAAGATAAAAAC	GCGTTGAATGCAACCCCGGAATGAACAAACACACCA
GTTTCAATCCCTCATAGTTAAGATAAAAAC	TTTTTTATGAAGATCGTGTTGTTTTACCAACAACGAA
GTTTCAATCCCTCATAGTTAAGATAAAAAC	TTACAACTGTGGATGGATCTGAAGGGTCGGTGATCAA
GTTTCAATCCCTCATAGTTAAGATAAAAAC	CAGGTCTACGTTAAGAGCGGAGTTTCTAGAGCATTTAGA
GTTTCAATCCCTCATAGTTAAGATAAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015436.1\|WP_044741976.1\|1384229_1385066_-\|class-II-aldolase	unknown	unknown	gnl\|CDD\|180705
NZ_CP015436.1\|WP_044741981.1\|1375068_1377207_-\|DEAD/DEAH-box-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224122
NZ_CP015436.1\|WP_044741979.1\|1378538_1381112_-\|NINE-protein	unknown	unknown	gnl\|CDD\|379075
NZ_CP015436.1\|WP_082063499.1\|1381957_1382122_-\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP015436.1\|WP_044741969.1\|1393288_1394242_-\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380478
NZ_CP015436.1\|WP_044741975.1\|1385079_1385976_-\|myo-inosose-2-dehydratase	unknown	unknown	gnl\|CDD\|275172
NZ_CP015436.1\|WP_044741974.1\|1386052_1387972_-\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	unknown	unknown	gnl\|CDD\|275170
NZ_CP015436.1\|WP_044741972.1\|1389605_1390613_-\|5-dehydro-2-deoxygluconokinase	unknown	unknown	gnl\|CDD\|275175
NZ_CP015436.1\|WP_156487495.1\|1373932_1374340_+\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376187
NZ_CP015436.1\|WP_044741970.1\|1392196_1393210_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP015436.1\|WP_052660919.1\|1371159_1372659_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NZ_CP015436.1\|WP_044741968.1\|1394319_1395315_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP015436.1\|WP_044741973.1\|1388089_1389550_-\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143404
NZ_CP015436.1\|WP_044741984.1\|1372646_1373663_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370769
NZ_CP015436.1\|WP_044741980.1\|1377209_1378538_-\|biotin-carboxylase	unknown	unknown	gnl\|CDD\|378508
NZ_CP015436.1\|WP_052660920.1\|1366020_1370433_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NZ_CP015436.1\|WP_044741971.1\|1390652_1391675_-\|inositol-2-dehydrogenase	unknown	unknown	gnl\|CDD\|275173
NZ_CP015436.1\|WP_044741982.1\|1374329_1374740_+\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|366864
NZ_CP015436.1\|WP_044741977.1\|1383427_1384213_-\|5-deoxy-glucuronate-isomerase	unknown	unknown	gnl\|CDD\|377429
NZ_CP015436.1\|WP_044741986.1\|1370416_1371163_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP015436.1\|WP_044741981.1\|1375068_1377207_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|224122	COG1201, Lhr, Lhr-like helicases [General function prediction only].	1.27515e-109
NZ_CP015436.1\|WP_044741976.1\|1384229_1385066_-\|class-II-aldolase	gnl\|CDD\|180705	PRK06806, PRK06806, class II aldolase.	2.35197e-156
NZ_CP015436.1\|WP_082063499.1\|1381957_1382122_-\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	1.26098e-06
NZ_CP015436.1\|WP_044741975.1\|1385079_1385976_-\|myo-inosose-2-dehydratase	gnl\|CDD\|275172	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase. Members of this family include the enzyme myo-inosose-2 dehydratase, product of the gene iolE, as found in inositol utilization cassettes in many species. [Energy metabolism, Sugars].	5.7288e-173
NZ_CP015436.1\|WP_044741974.1\|1386052_1387972_-\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	gnl\|CDD\|275170	TIGR04377, 3D-35/4-trihydroxycyclohexane-12-dione_hydrolase, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase. Members of this protein family, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase (iolD), represent one of eight enzymes in a pathway converting myo-inositol to acetyl-CoA. IolD hydrolyzes the cyclic molecule 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione to yield 5-deoxy-D-glucuronic acid. TPP is a cofactor. [Energy metabolism, Sugars].	0
NZ_CP015436.1\|WP_044741972.1\|1389605_1390613_-\|5-dehydro-2-deoxygluconokinase	gnl\|CDD\|275175	TIGR04382, myo-inositol_catabolism_protein, 5-dehydro-2-deoxygluconokinase. All members of the seed alignment for this model are translated from the iolC gene of known or putative inositol catabolism operons. Members with characterized function are 5-dehydro-2-deoxygluconokinase, the enzyme catalyzing the fifth step in degradation from myo-inositol or closely related compounds. Note that many members of this family are fusion proteins with an additional C-terminal domain, of unknown function, described by pfam09863. [Energy metabolism, Sugars].	1.61989e-161
NZ_CP015436.1\|WP_156487495.1\|1373932_1374340_+\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|376187	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase. A member of the nucleotidyltransferase fold found in polymorphic toxins (NTox45) and polyvalent proteins.	3.65692e-26
NZ_CP015436.1\|WP_044741969.1\|1393288_1394242_-\|substrate-binding-domain-containing-protein	gnl\|CDD\|380478	cd01536, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2) receptors such as LsrB and LuxP which are highly homologous to periplasmic pentose/hexose sugar-binding proteins.	9.04449e-89
NZ_CP015436.1\|WP_052660919.1\|1371159_1372659_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0.00112846
NZ_CP015436.1\|WP_044741968.1\|1394319_1395315_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	4.91736e-90
NZ_CP015436.1\|WP_044741973.1\|1388089_1389550_-\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
NZ_CP015436.1\|WP_044741984.1\|1372646_1373663_-\|hypothetical-protein	gnl\|CDD\|370769	pfam09983, DUF2220, Uncharacterized protein conserved in bacteria C-term(DUF2220). This domain, found in various hypothetical bacterial proteins, has no known function. The family represents just the C-terminus.	4.99954e-09
NZ_CP015436.1\|WP_044741979.1\|1378538_1381112_-\|NINE-protein	gnl\|CDD\|379075	pfam13208, TerB_N, TerB N-terminal domain. The TerB_N domain is found N-terminal to TerB, and TerB_C containing proteins. It has a predominantly alpha-helical structure and contains an absolutely conserved glutamate. The presence of a conserved acidic residue suggests that it might chelate metal like TerB. These proteins occur in a two-gene operon containing an AAA+ ATPase and SF-II DNA helicase suggesting a role in stress-response or phage defense.	2.14757e-21
NZ_CP015436.1\|WP_052660920.1\|1366020_1370433_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	8.13918e-22
NZ_CP015436.1\|WP_044741980.1\|1377209_1378538_-\|biotin-carboxylase	gnl\|CDD\|378508	pfam10923, DUF2791, P-loop Domain of unknown function (DUF2791). This is a family of proteins found in archaea and bacteria. This domain contains a P-loop motif suggesting it binds to a nucleotide such as ATP.	0
NZ_CP015436.1\|WP_044741970.1\|1392196_1393210_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	8.66255e-115
NZ_CP015436.1\|WP_044741982.1\|1374329_1374740_+\|DUF86-domain-containing-protein	gnl\|CDD\|366864	pfam01934, DUF86, Protein of unknown function DUF86. The function of members of this family is unknown.	1.69726e-27
NZ_CP015436.1\|WP_044741977.1\|1383427_1384213_-\|5-deoxy-glucuronate-isomerase	gnl\|CDD\|377429	pfam04962, KduI, KduI/IolB family. This family includes the 5-keto 4-deoxyuronate isomerase enzyme EC:5.3.1.17 that is involved in pectin degradation. This family aldo includes bacterial Myo-inositol catabolism (IolB) proteins. The Bacillus subtilis inositol operon (iolABCDEFGHIJ) is involved in myo-inositol catabolism. Glucose repression of the iol operon induced by inositol is exerted through catabolite repression mediated by CcpA and the iol induction system mediated by IolR. The exact function of IolB is unknown. Members of this family possess a Cupin like structure.	3.87897e-76
NZ_CP015436.1\|WP_044741971.1\|1390652_1391675_-\|inositol-2-dehydrogenase	gnl\|CDD\|275173	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase. All members of the seed alignment for this model are known or predicted inositol 2-dehydrogenase sequences co-clustered with other enzymes for catabolism of myo-inositol or closely related compounds. Inositol 2-dehydrogenase catalyzes the first step in inositol catabolism. Members of this family may vary somewhat in their ranges of acceptable substrates and some may act on analogs to myo-inositol rather than myo-inositol per se. [Energy metabolism, Sugars].	0

>NZ_CP015436.1|WP_082063499.1|1381957_1382122_-|transposase
MTKKQRRYEEDFKRQTVRYILEEAKSVAQVARELKINENTLHGWVKNIQYKLAF
>NZ_CP015436.1|WP_044741979.1|1378538_1381112_-|NINE-protein
MKKKVYKNKIVAYVLAFFLGGLGAHLFYLKKPFRAILYLLFSWTGYTFILGWLDMFFISSWVNKLNEKRVESSLDVEGVTYEHVLELSESVASNENTEVHTLRKEKGTSAIAIPTHSYEKKSTDKIHAIPNKPDNKKCTDELGGRIFKKIPFSTEPVKHLTILVNKELEQEQQRSNKQIPTESVLKEKEQLTNSEMEKQQQNNLKEFSSVVSTIKNEHLRCLQAALLELIRFKQELEIKEKIDHSHQQEEVIKTPQKENQELQSQIELDILVDKEEKSSPVAKSQLKDVKNTFIKGIKNMLSGTFYDEETIIMPEFAHVKTPSFVKEMIHNIKGKEQRKTLKNSYIYISVYTGESDFLNDSLHYSQKTGDPKVKFVPFMQYYPTFRSLDDNQKNWYFYWREEVLKGRYIDTDLSYIYLFAYELINYTFNQKTSFNVSMLVHLYNNYKERFPSLSRYLPEWIGHMLLEAGEKELASNWIRERTSNRYYEEFKKTLIETEDWSKISISIWKKYLRNHRETAFFTQNKNRIYNIFKSGIQLLREYYEEHGISIVDEWLVENIKQQPMFLFQGAVVHREERNTEITMNVLVPSEKLFDQVTALFKYSENIMRLLKENNRMVKVDEEVLPEEFRENMKQIFLNKDGIGSRFKVVQKGTMNSGSKIPDPPKDISQKQDIVSSGEQIQDLETVIEFDDDKIKQLEEENRLLLQHFEQYEDGDEHSISTTVENNVSAVLADENVNDNIPNSEKSDKEHESDVFFGSSDSFSLNFLSSSDGEASEFIHSLSELEKFLLKHFTGDSIQVSEAKQLMKSKGVMINVVIDNINEKAMDILGDKFIELEGERYVIYEEYIEVLNELKESV
>NZ_CP015436.1|WP_044741980.1|1377209_1378538_-|biotin-carboxylase
MNIKKRDSSAILNALSGGVVPSRGLQYIMVGRAEEAKQILSDLKNIKEGASIIKLFIGPFGSGKSFIQSLIKQIAFNEKFVVANADFTPERRLYGSEGKAVATYTELMKNLSTATSPEGNALPAILDKWISDVQSKIAEDKYNGLVEFDNKEFVKDVQTEITKIVSKMDELTGGYDFSRVLNLYFKGFVEDNNELQRKAIRWLRGEYSTKTEARSDLGVRTIIDDNNYYDYLKVMSQFVKQIGYSGLVINLDEAINLYKITHPQTREKNYETILKIYNDTLQGNVEGLYITIGGTPEFLEDERKGLFSYGALKRRLQTNPFETKEHRDLSQPVIKLTPLTHDETYVLLQKLRDIHAVHHGYETTVTNEEIKSFIRKEYSKPGAEGNLTVGEVIRTFLGALNILQQHTDYNRSELFGVALMNQESTNNSRVTNITSRFSRTGG
>NZ_CP015436.1|WP_044741981.1|1375068_1377207_-|DEAD/DEAH-box-helicase
MSSFDLLSPNMQKKIWEMRWEEFTPIQDKAIPAIIETDDDIIISSGTASGKTEAAFLPILTLIEDTAKQSLKVLYVSPLKALINNQFERIENLCKDIGILIHKWHGDVFQSKKKKFIQNPAGILQITPESIESLFINRTSMIPHIFNELDFIVIDEIHSFLDVERGGQLRSLLARIEKVINKRPRYIGLSATIDNFEFVKQWVNFRNTDRVRIIHEKGYDKELLYHLMHFQCIEPNKKPIELYEDIRELTRESKAIIFCNSREEVEYSTVLLNRLAQKDGEGETYYPHHSSIDKKEREFVEKTIAESTFPKSVIATSSLELGIDIGSIDIVIQVDSTYTVSSLRQRLGRSGRKQGSSSILQLYSTMEDSLVQSLAVMELVLEKWVEPSKGYKQPFDILFHQIISMCQQYNGIKRSQLIQEIKFNDAFHDLDIEDINELLNHMIEREILEQLPVVQELILGVEGERILRSKEFYSVFMTREQYDVFSGTKQIGTLDKKPFINIKDRIILAGKLWEIYDIDSKRNKIYVSKTSQGDPPKYSGDGGKIHQRIGEKMMEIICSDNSFEYIDEKAADCLKEIRIPYHYYEVTPQQRVIWRKKDELVFETYTGTTIFQTLMWMLRTKGVDVKTVDGVGRIKITMPPEEDILKVLDDIKNSNWCPEDVMKGVLEREKFVSKYSFYLPEKLRDKMHIANEVDIENTISYLDSYTFRLIVL
>NZ_CP015436.1|WP_044741982.1|1374329_1374740_+|DUF86-domain-containing-protein
MKNDVILNKISVIERCIKRIHEEYENNPKNLENYTKQDSMILNLQRACEASIDLAMHMVAQKKLGLPQNSRDAFSLLEQHGIITPFLSQKMKAMVGFRNIAVHDYQEINLTILQKILDHHLTDFTEFTKAILFYEQ
>NZ_CP015436.1|WP_156487495.1|1373932_1374340_+|nucleotidyltransferase-domain-containing-protein
MTEQIEPIIIEVLTETVSPYLIYLFGSTVTGHVHQDSDIDIAFLSDQKQLDHYERFMVAQELASKLHRDVDLVDLKQASTVFQAQVVSNGKVIYCTNEQKKAEYEWRALKMYAKLNEERTEILRNINESGSVYEK
>NZ_CP015436.1|WP_044741984.1|1372646_1373663_-|hypothetical-protein
MEQIERLLAAFPKRTISLGELEQLIQPFARTYDEFCEIVLRLEAERVLEMVKAKGRTTRTPSLAFQYRIHKSRFMEDYHRELQRYQNRLHPAIQLDAYYGKDPSVWEQDKPFILKIDDYLKTHSLPNEAVAAPERSVELVGDEKWITERGGKELLERIVLFDRLRIIPVSEPLMLAVNPAKIAEAVQHHLIVENKTTYQALLPALPDTAFSTLIYGEGKAVISSIEQFSLQYPVKAHHRFYYFGDIDREGISIWHSLAKKQPVSPSLPFYRACLRKDPVSGKGYQMERADVLDAFLAYFSADEKKQLQELLASGQYYPQEMLKTRELQQIWREWQWTS
>NZ_CP015436.1|WP_052660919.1|1371159_1372659_-|hypothetical-protein
MDKLELAGVTDGYRERIRRLALFDPLFDLERKRSTDLNGQPIDMKGLGLLALLFFFEQKLMRQYKTGVKQLASFLKKLTENVYVLDDEMYEDLARTIIQTFRPTTGRKRSYSFYDWEKREESAIDYSLLKANDFDVKTNTQYYTLDEDGLELVFATKEFYSEFQLSINQLMLRKQLEKGEFAAALKQINEMRIDVETLEERMTRLKHEIQRSIISEETFERYKQLLDDIYSRLSREDEEFKELREFVNETRERLYARDVHQKEARTYELVLKIAWELESVHYAHSALLDKALSLKNTTLVTAQESLYYTGLHSFNFDQDIVSYVVSTPLPLEAMKGLLHPFLKVEENQFWSPLAIFAEQNITEERGEKVGLRFIEADDAVCDDPYRTWLMAKYKELMQLFLEAYQLGRAQTLSEFFSYLDDIGQSRLYEQRYFYDFWLIMHQHSPVQHGDMKGEEGNTLLGDALVLLGGNVLDVQEGDRIIRKCERFSIQDMMITVREQ
>NZ_CP015436.1|WP_044741986.1|1370416_1371163_-|hypothetical-protein
MRNYPEQKVIQAFQLYTVLASHGVAGEQAVQLYKSDDDIRGLLDIFSREVDCVIILTSEEMFLVPRTKLSPFHVSNDWIKRHYLRSGATNGDLYLLYFTVLVLFGSFYDTYQSQEPTRQFLGMDEWVHLVQERIDQLKQHDPDELKQLEQEFSYNWRLIIEKWDAMDDIKETAKKQSGNTISRLSFIDTARRFLIDQDLILDIGNHEVALTEKAKTIVQRFFMEVEYNRGIFEFIYGFEREKDDASDQ
>NZ_CP015436.1|WP_052660920.1|1366020_1370433_-|hypothetical-protein
MPAISKIRLTNVVYEEGRKRYNDEIFRFDGHNGAILLENGGGKTVFIQTVLQAILPHVDVADRKIKNTLQFENAPAHIAIEWMLNDEPRRYVVTTVSLFMTNNGLDSLRYVYEYNANDPHGIEGLPFVREGKDGKRPAERGEMQDYYSHMKEKTFLARTFSTIKEYKAFIEEQYHIISSEWESVVKINSSEGGVEAFFDECKSTNQLFDRLLIPIVESAIVGHDAKLFADMFEKQHASFKHYKKLKETIEENKLIQRELERYVETYEQLHREELAYLKAKQRAKGVWLETLKQKQACLDEQKDIADKLEYWKLNYAAHNKKRATYDILVEEARWRELQREYELVLAWQKEKEEARTRLERDYYSLQLAERKEERKRHEEALAYIEQELAKLKDDEKLANYEEEWETARRSLLGYFMKKLEDIDNDERSLRYELNPIQAQLEQWTKEKEACERQKLDTREKRAAIKSLIDARENDMEQIKQRILANPSQQSVEEEMAKWIERERWLDEEIVRLRQDVKQFSQAEQEAEAKKEALQQQWAAKHAERQALVQQFKALENEEQALIRKLASLRPQWAALDGVYAHEATIGMRLQEEIEKRAKDREELLVRERIASRLADAYGGQDIFFADPFLAQQLASWKNQFDYVATGVEYLQSLEEEDCAKKRAFPLWPMALITTAKSKERLSQKVQYLYDRLQLPIVVLTADEAARIEDEVLSYEWIAPRYWEEASDPELFRAWKERINASARDMTLRRQEKEAELKLWQDVQQAWRAFLEAHSYKTVEAARTQYAALNSGIEQLKIAVDKEKARIDEWRAKIAHAQSLIHQYEQEMKGWRDKIEDANKYIQYEKEVQEARKTEKTLNEKIAALEKDIVRLNERLEDALAQKADLEESIRSLQADRRYIERSDDYQSLRSFTPLYSGASERVIRDKIRKLEDRMNGIETTYREWKLRQETEQREIDRLTNEINKLKRQYPDLDETRSFPSDGPYVLQRLEEQIVSLQSELKRLNKDVQDALIRKEQQSGVLKTKEQQFQQQYPNEECWPFTEPLYEIADHLKTEKEELEKRKAFLDQEHERLAKKMKSIEQAERHLELSKEVHHFNAPTIDALSLSAEEATAFTYGHQRFIEGITESLKAGRQAVEETKSRVERAKRSFREFCNSLIKDMKMRQMALNGIEHKETYEDIIDFKKNMMRSVESATNYANEHIRQKDAELQAFINHIHTHLRTLVEELKQIPNKTRVKVGDEWKRIFTFTIPEWEEEVGKTRIRNHIEWILQQLESERFMNEHGQQDEAKVRKEIEMWLQSKQLLQVVMNNEGMKVNCRKVMNDNQVTMRSYSWEQSNVWSGGEKWSKNMTLFLGILNYVAEKKQHIQPTMKRHRTVILDNPFGKASSDHVLNPVFFIAEQLGFQIIALTAHAEGKFLRDYFPIIYSCRLRPSSDPNKQVMTKEKWLHYAYFQDHEPKSLERLGETEQLELF
>NZ_CP015436.1|WP_044741977.1|1383427_1384213_-|5-deoxy-glucuronate-isomerase
MYEKLGELKEGYTMITDMKSKHPDMLQDIGIYVLSAGKVERLFDEEKEAAILLLEGDVRLEWNGFSREVKRDSVFTESPWCLHVPKGIEVKVTARTKSEVLVQKTDNPNSFEPKLYTPDDCESIVAGEGVWNGTAERVIRTIFDYNHAPYSNLVIGEVISYPGRWSSYPPHHHDQPEVYYYRFDRPAGFGCAMVGPHAYRVEHNSYITIPGGMDHPQATAPGYAMYFCWMIRHLDHPWTDRIIEEEHKWLLDPHAKIWPNK
>NZ_CP015436.1|WP_044741976.1|1384229_1385066_-|class-II-aldolase
MTLVRMKEILTHAEEHHYGVGAFSVANMEMVIGAIRAAEELRSPLILQIAEVRLKHSPLSIIGPMMVAAAKAAQIPVAVHFDHGLTEEKIREALEIGFTSIMYDGSHDELEKNIAETKKMTALARRYGATVEAELGQVGGSEDGSVDLEILLTSVEEAKRFVAETGIDALAIAIGNAHGMYKGDPCLRFDRLEEIDQAVEIPLVLHGGSGISEDDFRKSINLGIRKINVATATFHNVVNAVNTGRPFSDYFSYHERVIEAAAESVKRHMRMFQSVGRV
>NZ_CP015436.1|WP_044741975.1|1385079_1385976_-|myo-inosose-2-dehydratase
MFTENRVKLAIAPIGWTNDDMPELGGDIPFEQCISEMALAGFIGCEVGHKYPREIEVLKKALDLRGLRIASAWFSAFLTSKPFQETAEAFKAHRDFLYALGAKVIVVSEQGNSIQGQMEAPLFENKPVFTEEEWSCLVDGLHRLGDLAAEKNMKIVYHHHMGTGVQTTEEIDRLMEETDPQKVSLLYDTGHLVFSGEDPLHVLNKYIHRIHHVHLKDVRMEIVHKVREGKMSFLQAVKAGVFTVPGDGAIDFQPVFAALAAAGYEGWLVVEAEQDPSVANPLEYALKARQYIRETCGL
>NZ_CP015436.1|WP_044741974.1|1386052_1387972_-|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)
MGTVRLTTAQALVKFLNNQYIEFDGKQQRFVKGIFTIFGHGNVLGLGQALEENPGELKVYQGRNEQGMANAAIAFAKQKHRKQMMAVTSSVGPGAANMVTSAATATANHIPVLLLPGDVFATRQPDPVLQQIEQTHDLSISTNDAFRAVSKYWDRVCRPEQLMSAMLNAMRVLTDPADTGAVTIALPQDVQGEAWDFPESFFAKRVHRVERRQPSMESVHDAVKLIRSKKRPLLILGGGVRYSEASDAFVAFAEKFHIPFAETQAGKSGVESSHPLNLGGIGVTGNLAANTIAKQADLIIGVGTRFTDFTTASKHLFSHADIITINVSEFHAAKLDAVKVIADAKAGLEAISAALGNYVSAYENEIVEAKQKWANELNRLYSVAYRENFKPEIAGHIDEKLPEYKEAFGSALTQTSVIGRINEQIDDDAIIVGASGSLPGDLQRMWVSKARNTYHMEYGYSCMGYEIAGAFGVKLAEPDKEVYAMVGDGSFLMLHSELVTSLQEGKKINIVLFDNSGFGCINNLQMENGMGSFATEFRKRNAETGQLDGPIITIDYAKVAEGYGLKTYTVRTMEELEEAMADAKKQTVSTLIDIKVLPKTMTHGYDSWWHVGVPEVSGKEGIEAAYQKKEAHLQLARKY
>NZ_CP015436.1|WP_044741973.1|1388089_1389550_-|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
MKITVKSLKNYIGGEWVESVSNRTEVVYNPATGEELVIVPLSTKEEVDKAVQAAHEAFQTWSQVPVPKRARLLFKYQQLLVEHWEELARLVTIENGKNYDEAYGEVLRGIECVEFAAGIPTLMMGKQLPDIATGLESGMYRYPLGVVAGITPFNFPMMVPCWMFPLAIACGNTFVLKPSERTPLLAQRLAELFEEAGFPKGVLNIVNGAHDVVNGLLEHKLVKAISFVGSQPVAEYVYKTAAANLKRVQALSGAKNHSIVLADANLEHAAKQIISAAFGSAGERCMATSVVVVEESIADKFIAKLKVEADAIQIGNGLAEGVFLGPVIRQSHKERTIGYIEKGIEEGATLVRDGRKDAAVNKEGYFIGPTIFENVTQEMKIWQDEIFAPVLSVVRVKNLTEAIEYANASPFANGACIFTDSAAAVRQFRETIDAGMLGVNIGIPAPMAFFPFSGYKDSFYGDLHANGTDGVEFYTRKKMVTARYMK
>NZ_CP015436.1|WP_044741972.1|1389605_1390613_-|5-dehydro-2-deoxygluconokinase
MNLLTFHQDRPLDLIAVGRLCIDLNANEINRPMEETRTFTKYVGGSPANIAIGFARLGQKTGFIGKIANDQMGRFILDYLQKNGIDTKGIAIDRTGAVTGLAFTEIKSPEDCSILMYRDNVADLKLHPLDIDEDYIKQSKALLISGTALAQSPSREAVFLALEYAVKHGVTVFFDLDYRPYTWTDEAETAVYYNLAAEKCDVVIGTREEFNIMEKLLNGKEANDYDTASRWFSFRAKMVVIKHGGAGSIAYTKDGKSYRSGIFRTNVLKTFGAGDSYASAFIYGLMNGRDVAEAMKLGSASASIVISRHSCSDAMPTLQELQHHIETAIYEPALS
>NZ_CP015436.1|WP_044741971.1|1390652_1391675_-|inositol-2-dehydrogenase
MGLTVGIIGAGRIGRLHADHLRFISQVRVKSVSDVAIHHLESWAKERQIEVLTADYRQILMDPDIDAVLICSPTNTHATMIKEAALAGKHIFCEKPISFTLRETEEALEAVEKAQVKFQVGFNRRFDPNFRKVRDLVQNGTIGVPHILRITSRDPKPPSMDYIKSSGGLFMDMMIHDFDMARYIMESEVVEVSAYGAVLVDPAIEEAGDIDTAVVTLKFANGALGVIDNSRQAVYGYDQRLEIFGSKGSALADNHRPTTVEVSTSEHVSKDKPLYFFLERYTQAYMNEVSEFVRAILTNQPVICSGFDGLQAQRIAEAAKKSLEAGIPVKLEAVNSAASV
>NZ_CP015436.1|WP_044741970.1|1392196_1393210_-|LacI-family-transcriptional-regulator
MKPTIYDVAKKAGVSIATVSKVVNNTGNISDRTRKKVMKVMQELEYQPSSLAAALTGKRTFTIGVLVPDIANPFFAEVARALENYARETGYAMILCSTDYQRKREQDYLELLMKKQVDGIIIATEPKDLSAFRKLQSRHIPFLMFSIDHLALSSHVVTTDDIRGGYLAGRYLLDKGHRRLAIIAELSRPSGRLRLEGFKQALSDQGIELESPFIIDAISKVEDAKLASQKLLHLPEKPTGVFATTDLIAVVFMNEARKLHVQVPGDISVIGFDNTIHAEIADPGLTTIAQPIDDLARYAVYKLLESIEKPEMPGHRIMLAPALVERQSVKDLKDQYS
>NZ_CP015436.1|WP_044741969.1|1393288_1394242_-|substrate-binding-domain-containing-protein
MKKKIRLFSVAAAFMGMVLLAGCNSGQEASGGENTERVAVVLKTLSSPYWKYVEAGAKAAGKELGIDVTVVGPNSESEVMQQVNMIEDQLSQSPGALVVSPTQPDTVVPVLEGANVPVLLIDTDADLKNKTSFIGTENYEAGYEGGKLLASMLQKGDKAAIVSGALGNTATDERVKGAKAALKEAGIEVVAEQPADSDKTKAMSVMENILQKNNDIKGVFAANDDMALGVLRAVEAKGLDVKVIGTDGTLEAVESILAGKLAGTIAQSPYDMGYEGVKNALAAIKGKKVEKRMKSPVEVITKENAQEKLEFLKKIVE
>NZ_CP015436.1|WP_044741968.1|1394319_1395315_-|ABC-transporter-permease
MSQVAVQTKNEAVEKNRAFKRIISKFGPLIGLILLTAVLTILSPKFLTINNVMNIARQSSINALLAIGMLLPILTAGIDLSVGSLLALSIMMMGIVTVNMGMHPLLGILVCLSVGAAFGWLNGILLTKLRLPHPFISTLGTMNIARGIALIVTGAAPIAGFPYMIQFLGREFVGPIPVSFLLVIVVYVFFHIFLTRTQTGRYIYAIGGNPETARLSGINVDRVLIIVYTISGFMAGLAGLVMVGRVNSAFPLAGLSYELDAIAAVIIGGASFLGGVGTVWGTLIGALIIAVLRNGLNLLNVSADFQMTVIGAVIIAAVFVDVLRQRKSKKA

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Crispr_ID: NZ_CP015436_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015436_7

1404289-1404784

Orphan

Consensus_repeat	Method
GTTTTTATCTTAACTATGAGGGATTGAAAC	PILER-CR
GTTTCAATCCCTCATAGTTAAGATAAAAAC	CRISPRCasFinder
GTTTCAATCCCTCATAGTTAAGATAAAAAC	CRT

7 spacers

The CRISPR arrays of NZ_CP015436_7

>merge|NZ_CP015436|7|1404289-1404784|PILER-CR,CRISPRCasFinder,CRT
GTTTTAATTCCGTATAGTTAAGATAAAAACGAGATCGTTCTTGAGGTGAGTGACACAGGATTAGACGGGTTTCAATCCCTCATAGTTAAGATAAAAACCGCACTCACACTGCCGAGAGTACGTATCCCGCCATTGCGTTTCAATCCCTCATAGTTAAGATAAAAACCGTGCTCCCTAGCACTTTCGATGTATCGTGTGACCAGTTTCAATCCCTCATAGTTAAGATAAAAACGGATATCACGGAAGTGGCGCAAATTTCGCATACTGAGTTTCAATCCCTCATAGTTAAGATAAAAACTCAAAATCTGTTCTTGTATCCACTCTTTTGTCATCTGTTTCAATCCCTCATAGTTAAGATAAAAACTCAAAATCTGTTCTTGTATCCACTCTTTTGTCATCTGTTTCAATCCCTCATAGTTAAGATAAAAACTGAAAAGGTTCGAGGGTATTTGAGACGGCAAAAAGAGTTTCAATCCCTCATAGTTAAGATAAAAAC

>NZ_CP015436|7|7|1404289-1404784|PILER-CR
GTTTTAATTCCGTATAGTTAAGATAAAAAC	GAGATCGTTCTTGAGGTGAGTGACACAGGATTAGACGG
GTTTCAATCCCTCATAGTTAAGATAAAAAC	CGCACTCACACTGCCGAGAGTACGTATCCCGCCATTGC
GTTTCAATCCCTCATAGTTAAGATAAAAAC	CGTGCTCCCTAGCACTTTCGATGTATCGTGTGACCA
GTTTCAATCCCTCATAGTTAAGATAAAAAC	GGATATCACGGAAGTGGCGCAAATTTCGCATACTGA
GTTTCAATCCCTCATAGTTAAGATAAAAAC	TCAAAATCTGTTCTTGTATCCACTCTTTTGTCATCT
GTTTCAATCCCTCATAGTTAAGATAAAAAC	TCAAAATCTGTTCTTGTATCCACTCTTTTGTCATCT
GTTTCAATCCCTCATAGTTAAGATAAAAAC	TGAAAAGGTTCGAGGGTATTTGAGACGGCAAAAAGA
GTTTCAATCCCTCATAGTTAAGATAAAAAC

>NZ_CP015436|7|7|1404289-1404784|CRISPRCasFinder
GTTTTAATTCCGTATAGTTAAGATAAAAAC	GAGATCGTTCTTGAGGTGAGTGACACAGGATTAGACGG
GTTTCAATCCCTCATAGTTAAGATAAAAAC	CGCACTCACACTGCCGAGAGTACGTATCCCGCCATTGC
GTTTCAATCCCTCATAGTTAAGATAAAAAC	CGTGCTCCCTAGCACTTTCGATGTATCGTGTGACCA
GTTTCAATCCCTCATAGTTAAGATAAAAAC	GGATATCACGGAAGTGGCGCAAATTTCGCATACTGA
GTTTCAATCCCTCATAGTTAAGATAAAAAC	TCAAAATCTGTTCTTGTATCCACTCTTTTGTCATCT
GTTTCAATCCCTCATAGTTAAGATAAAAAC	TCAAAATCTGTTCTTGTATCCACTCTTTTGTCATCT
GTTTCAATCCCTCATAGTTAAGATAAAAAC	TGAAAAGGTTCGAGGGTATTTGAGACGGCAAAAAGA
GTTTCAATCCCTCATAGTTAAGATAAAAAC

>NZ_CP015436|7|7|1404289-1404784|CRT
GTTTTAATTCCGTATAGTTAAGATAAAAAC	GAGATCGTTCTTGAGGTGAGTGACACAGGATTAGACGG
GTTTCAATCCCTCATAGTTAAGATAAAAAC	CGCACTCACACTGCCGAGAGTACGTATCCCGCCATTGC
GTTTCAATCCCTCATAGTTAAGATAAAAAC	CGTGCTCCCTAGCACTTTCGATGTATCGTGTGACCA
GTTTCAATCCCTCATAGTTAAGATAAAAAC	GGATATCACGGAAGTGGCGCAAATTTCGCATACTGA
GTTTCAATCCCTCATAGTTAAGATAAAAAC	TCAAAATCTGTTCTTGTATCCACTCTTTTGTCATCT
GTTTCAATCCCTCATAGTTAAGATAAAAAC	TCAAAATCTGTTCTTGTATCCACTCTTTTGTCATCT
GTTTCAATCCCTCATAGTTAAGATAAAAAC	TGAAAAGGTTCGAGGGTATTTGAGACGGCAAAAAGA
GTTTCAATCCCTCATAGTTAAGATAAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015436.1\|WP_044746311.1\|1415804_1417502_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226350
NZ_CP015436.1\|WP_044741966.1\|1397163_1398216_-\|inositol-2-dehydrogenase	unknown	unknown	gnl\|CDD\|275173
NZ_CP015436.1\|WP_044746310.1\|1414623_1415472_-\|N-acyl-homoserine-lactonase-family-protein	unknown	unknown	gnl\|CDD\|293815
NZ_CP015436.1\|WP_044741971.1\|1390652_1391675_-\|inositol-2-dehydrogenase	unknown	unknown	gnl\|CDD\|275173
NZ_CP015436.1\|WP_156487494.1\|1411578_1413222_+\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|224699
NZ_CP015436.1\|WP_044741964.1\|1399250_1400585_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|273332
NZ_CP015436.1\|WP_044742067.1\|1403679_1404072_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044741970.1\|1392196_1393210_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP015436.1\|WP_082063496.1\|1401194_1401779_+\|DUF4395-family-protein	unknown	unknown	gnl\|CDD\|379566
NZ_CP015436.1\|WP_044741965.1\|1398585_1399026_-\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|369049
NZ_CP015436.1\|WP_044741969.1\|1393288_1394242_-\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380478
NZ_CP015436.1\|WP_044741968.1\|1394319_1395315_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP015436.1\|WP_044746309.1\|1413406_1414606_-\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341481
NZ_CP015436.1\|WP_044741967.1\|1395323_1396832_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP015436.1\|WP_044746308.1\|1410296_1411313_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270234
NZ_CP015436.1\|WP_044746305.1\|1406527_1408159_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP015436.1\|WP_044746306.1\|1408228_1409755_-\|transporter	unknown	unknown	gnl\|CDD\|225870
NZ_CP015436.1\|WP_044746307.1\|1409767_1410223_-\|tripartite-tricarboxylate-transporter-TctB-family-protein	unknown	unknown	gnl\|CDD\|377815
NZ_CP015436.1\|WP_082063839.1\|1405274_1405403_+\|YhfH-family-protein	unknown	unknown	gnl\|CDD\|379490
NZ_CP015436.1\|WP_044746318.1\|1405866_1406565_-\|response-regulator	unknown	unknown	gnl\|CDD\|226931

Protein	Function_ID	Function_description	E-value
NZ_CP015436.1\|WP_044746311.1\|1415804_1417502_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	5.31844e-176
NZ_CP015436.1\|WP_044741966.1\|1397163_1398216_-\|inositol-2-dehydrogenase	gnl\|CDD\|275173	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase. All members of the seed alignment for this model are known or predicted inositol 2-dehydrogenase sequences co-clustered with other enzymes for catabolism of myo-inositol or closely related compounds. Inositol 2-dehydrogenase catalyzes the first step in inositol catabolism. Members of this family may vary somewhat in their ranges of acceptable substrates and some may act on analogs to myo-inositol rather than myo-inositol per se. [Energy metabolism, Sugars].	1.51857e-127
NZ_CP015436.1\|WP_044746310.1\|1414623_1415472_-\|N-acyl-homoserine-lactonase-family-protein	gnl\|CDD\|293815	cd07729, AHL_lactonase_MBL-fold, quorum-quenching N-acyl-homoserine lactonase, MBL-fold metallo-hydrolase domain. Acyl Homoserine Lactones (also known as AHLs) are signal molecules which coordinate gene expression in quorum sensing, in many Gram-negative bacteria. Quorum-quenching N-acyl-homoserine lactonase (also known as AHL lactonase, N-acyl-L-homoserine lactone hydrolase, EC 3.1.1.81) catalyzes the hydrolysis and opening of the homoserine lactone rings of AHLs, a reaction that can block quorum sensing. These enzymes belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	3.86761e-72
NZ_CP015436.1\|WP_044741971.1\|1390652_1391675_-\|inositol-2-dehydrogenase	gnl\|CDD\|275173	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase. All members of the seed alignment for this model are known or predicted inositol 2-dehydrogenase sequences co-clustered with other enzymes for catabolism of myo-inositol or closely related compounds. Inositol 2-dehydrogenase catalyzes the first step in inositol catabolism. Members of this family may vary somewhat in their ranges of acceptable substrates and some may act on analogs to myo-inositol rather than myo-inositol per se. [Energy metabolism, Sugars].	0
NZ_CP015436.1\|WP_044741964.1\|1399250_1400585_-\|amino-acid-permease	gnl\|CDD\|273332	TIGR00911, High-affinity_methionine_permease, L-type amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	5.05886e-60
NZ_CP015436.1\|WP_156487494.1\|1411578_1413222_+\|alkaline-phosphatase	gnl\|CDD\|224699	COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and metabolism].	4.84873e-122
NZ_CP015436.1\|WP_044741970.1\|1392196_1393210_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	8.66255e-115
NZ_CP015436.1\|WP_082063496.1\|1401194_1401779_+\|DUF4395-family-protein	gnl\|CDD\|379566	pfam14340, DUF4395, Domain of unknown function (DUF4395). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 142 and 168 amino acids in length. There are two completely conserved C residues that may be functionally important.	4.22061e-31
NZ_CP015436.1\|WP_044741965.1\|1398585_1399026_-\|PH-domain-containing-protein	gnl\|CDD\|369049	pfam06713, bPH_4, Bacterial PH domain. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown. Members of this family have a PH domain like structure.	4.6759e-24
NZ_CP015436.1\|WP_044741969.1\|1393288_1394242_-\|substrate-binding-domain-containing-protein	gnl\|CDD\|380478	cd01536, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2) receptors such as LsrB and LuxP which are highly homologous to periplasmic pentose/hexose sugar-binding proteins.	9.04449e-89
NZ_CP015436.1\|WP_044741968.1\|1394319_1395315_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	4.91736e-90
NZ_CP015436.1\|WP_044746309.1\|1413406_1414606_-\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341481	cd08551, Fe-ADH, iron-containing alcohol dehydrogenases (Fe-ADH)-like. This family contains large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases, insect-type, or short-chain alcohol dehydrogenases, iron-containing alcohol dehydrogenases, among others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.	1.617e-178
NZ_CP015436.1\|WP_044741967.1\|1395323_1396832_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP015436.1\|WP_044746308.1\|1410296_1411313_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	3.01136e-88
NZ_CP015436.1\|WP_044746305.1\|1406527_1408159_-\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	0
NZ_CP015436.1\|WP_044746306.1\|1408228_1409755_-\|transporter	gnl\|CDD\|225870	COG3333, COG3333, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP015436.1\|WP_044746307.1\|1409767_1410223_-\|tripartite-tricarboxylate-transporter-TctB-family-protein	gnl\|CDD\|377815	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family. This family consists of several hypothetical bacterial proteins of around 150 residues in length. This family was formerly known as DUF1468.	2.82191e-10
NZ_CP015436.1\|WP_082063839.1\|1405274_1405403_+\|YhfH-family-protein	gnl\|CDD\|379490	pfam14149, YhfH, YhfH-like protein. The YhfH-like protein family includes the B. subtilis YhfH protein, which is functionally uncharacterized. Its expression is repressed by the Spx paralogue MgsR, which regulates genes involved in stress response. This family of proteins is found in bacteria. Proteins in this family are typically between 42 and 53 amino acids in length.	2.07672e-10
NZ_CP015436.1\|WP_044746318.1\|1405866_1406565_-\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	1.18148e-82

>NZ_CP015436.1|WP_044742067.1|1403679_1404072_-|hypothetical-protein
MLGIVLPLVIMTLIFHTGNVSSVFPFLYWALMPFIYLNLFDSFEICENGICGDKLYRWDGIKQVSFEPIDIFHRYYGLLETNETTYAMWLYDREGKKLMHRVTIVNGQEKQDVTELLEARSVEVTCLQKS
>NZ_CP015436.1|WP_082063496.1|1401194_1401779_+|DUF4395-family-protein
MRRPKAPSSVPRPFVRVNQWFIVLSVLFTWMTHQEWLLLFPLISGLLGLLFHFHPVMRAAKFFLRKEPSEYIPEDDAQQQFNQTIAVICLSIGYVSFLAGWTKIAYVFTLLVALAAFVAILGFCIGCFIVKKIQAKLDCLNKGESYINIHVKEVLAYIIRNVHHTWELLVFEHQNIPEAGIQIPGGIFESCDRD
>NZ_CP015436.1|WP_044741964.1|1399250_1400585_-|amino-acid-permease
MEKEMKLKRNIGFFVSTSLVIGTVIGSGIFMKPGVVLSATGNSNMALLAWIIGGIITLASGLTIAEVSVKIPKTGGLYAYIEEVYGKTWGFLCGWVQTIVYGPAVIGALALYFGTLMADFFHFPKGSSLIIGIVTTILLAGLNLLGTKFGGFIQTASTIGKLIPIILIAVFGMFKGDAAVFNVESGNIQNLSMGAAILATLWAYDGWMNVGFMAGEMKNPAKDLPRAIISGLLVVIIAYLSVNIAMLHVLPADQIVELGPNAASTAATLLFGEIGGKILAIGILISIFGCLNGKILTFPRIPYAMAVRGLLPGSKFLSGIHPKFNTPVGATVVQAVIAIVMMIFWNPDRLTDMAIFAVLLFYGLSFNAVFLLRKKDKNESHLYKVPFYPITPLVAIGGTAYIIISTLMNAPADTLFSIGITLIGLPVYWKLKEKNNSTSNLKAS
>NZ_CP015436.1|WP_044741965.1|1398585_1399026_-|PH-domain-containing-protein
MVFYSKKGPISSIVTWLLIVGSIVLPTAVHLELGTIAEGLTVNDKILLIVICSLFTLFLFSGWFHTFYILTDKVLKVRGGIFSWTIPLEEIEAITESKNPLSASALSLDRLQITYGKSKFILISPKDKSLFLKQIKKIRPDVLIEG
>NZ_CP015436.1|WP_044741966.1|1397163_1398216_-|inositol-2-dehydrogenase
MEKVKVGIVGLGRLGRQHAENLAFRISGCELLAVCSVAAEEVEQVQKDWGIKYGYTQFDEMLQNQELDAIFISSPSNFHCEQIVKALNAGFHVFCEKPLGLYLEEALRVQEAVNQQKDKIFMLGFMRRYDKSYQYAKKKIEEGKIGEPIFIRCYGLDPAKAMDEFIQFAKSNYSGGLFLDMAIHDFDLARWYLGVEAKQVWAIGGAYAYPEFSEMNDAETGAALVKFENNKIGIFVAGRNCAHGYHIETEIIGTKGTLRIGTIPEKNRVTVFDEKGAIKECSDGFLERFEQAYLSEAEEFIACIRENRQPAVTVKDGVISTALGYACRESFETGKLVTVQSPIQTPASLI
>NZ_CP015436.1|WP_044741967.1|1395323_1396832_-|sugar-ABC-transporter-ATP-binding-protein
MVGHAENLLEMKGIKKSFNQNHVLKGIDLDIKAGEVHVLLGENGAGKSTLIKILTGAYQKDAGEIYWEGRAVHLQTPADAMRLGIATIYQELNVIPQLKVYENIFLGRELKRGGKMSMLDHKTMREEAKRCLEMLGQSPDLADMQLGKLGIGQQQLVEIAKALTLDAKLIIMDEPTSSLSVQEVHQLYKCVEQLKEKGIAILFISHKLEEIKRLGDRITILRDGFKIETLPVKTTDTDDWIELMVGRSLDEKFPKQTFTLGREGFRVENLEVAGASEPVSFRVRYGEIVGISGLVGAGRTELARAIFGADPRRNGKIFIDGKEVKIKSPRDAIDAGIAFITEDRKGEGLLLDQKLDFNITMANMKKFTKKSRLIHLNEIREEAKRFIRELKIRPDHIELKARNLSGGNQQKVVIAKWLCTKAKVFIFDEPTRGIDVGAKVEVYRLMNQLVENGAIVIMISSELPEILGMCDRVLVMREGRITADLPIKEATQERIMRAATGG
>NZ_CP015436.1|WP_044741968.1|1394319_1395315_-|ABC-transporter-permease
MSQVAVQTKNEAVEKNRAFKRIISKFGPLIGLILLTAVLTILSPKFLTINNVMNIARQSSINALLAIGMLLPILTAGIDLSVGSLLALSIMMMGIVTVNMGMHPLLGILVCLSVGAAFGWLNGILLTKLRLPHPFISTLGTMNIARGIALIVTGAAPIAGFPYMIQFLGREFVGPIPVSFLLVIVVYVFFHIFLTRTQTGRYIYAIGGNPETARLSGINVDRVLIIVYTISGFMAGLAGLVMVGRVNSAFPLAGLSYELDAIAAVIIGGASFLGGVGTVWGTLIGALIIAVLRNGLNLLNVSADFQMTVIGAVIIAAVFVDVLRQRKSKKA
>NZ_CP015436.1|WP_044741969.1|1393288_1394242_-|substrate-binding-domain-containing-protein
MKKKIRLFSVAAAFMGMVLLAGCNSGQEASGGENTERVAVVLKTLSSPYWKYVEAGAKAAGKELGIDVTVVGPNSESEVMQQVNMIEDQLSQSPGALVVSPTQPDTVVPVLEGANVPVLLIDTDADLKNKTSFIGTENYEAGYEGGKLLASMLQKGDKAAIVSGALGNTATDERVKGAKAALKEAGIEVVAEQPADSDKTKAMSVMENILQKNNDIKGVFAANDDMALGVLRAVEAKGLDVKVIGTDGTLEAVESILAGKLAGTIAQSPYDMGYEGVKNALAAIKGKKVEKRMKSPVEVITKENAQEKLEFLKKIVE
>NZ_CP015436.1|WP_044741970.1|1392196_1393210_-|LacI-family-transcriptional-regulator
MKPTIYDVAKKAGVSIATVSKVVNNTGNISDRTRKKVMKVMQELEYQPSSLAAALTGKRTFTIGVLVPDIANPFFAEVARALENYARETGYAMILCSTDYQRKREQDYLELLMKKQVDGIIIATEPKDLSAFRKLQSRHIPFLMFSIDHLALSSHVVTTDDIRGGYLAGRYLLDKGHRRLAIIAELSRPSGRLRLEGFKQALSDQGIELESPFIIDAISKVEDAKLASQKLLHLPEKPTGVFATTDLIAVVFMNEARKLHVQVPGDISVIGFDNTIHAEIADPGLTTIAQPIDDLARYAVYKLLESIEKPEMPGHRIMLAPALVERQSVKDLKDQYS
>NZ_CP015436.1|WP_044741971.1|1390652_1391675_-|inositol-2-dehydrogenase
MGLTVGIIGAGRIGRLHADHLRFISQVRVKSVSDVAIHHLESWAKERQIEVLTADYRQILMDPDIDAVLICSPTNTHATMIKEAALAGKHIFCEKPISFTLRETEEALEAVEKAQVKFQVGFNRRFDPNFRKVRDLVQNGTIGVPHILRITSRDPKPPSMDYIKSSGGLFMDMMIHDFDMARYIMESEVVEVSAYGAVLVDPAIEEAGDIDTAVVTLKFANGALGVIDNSRQAVYGYDQRLEIFGSKGSALADNHRPTTVEVSTSEHVSKDKPLYFFLERYTQAYMNEVSEFVRAILTNQPVICSGFDGLQAQRIAEAAKKSLEAGIPVKLEAVNSAASV
>NZ_CP015436.1|WP_082063839.1|1405274_1405403_+|YhfH-family-protein
MLSLEFYRNLPPKQCRECGEEIVEQHESYLYECEKCMGRHEE
>NZ_CP015436.1|WP_044746318.1|1405866_1406565_-|response-regulator
MRTPIRVLIVEDDERIAEINRRFTEKVEDYEVIGMATNEREGKELVEVMQPDLVLLDIYFPDMNGLQFLKWIRNSFTNIDVIAITAAREIDTLKQAMHGGVFDYIIKPIMLSRFTDTLVRYKEYYKNMSQFMNEKELIEQEDVDKLIRREQTVFSREKELPKGIHQLTLEKVLAVIKRYPHGITAEEMGRLIGASRTTTRRYLEYLVSISQVVADIAYGSVGRPERTYRLKK
>NZ_CP015436.1|WP_044746305.1|1406527_1408159_-|sensor-histidine-kinase
MKLQTKLIAVICSLLLVVIVLLSFLFQHMLARTLKEQIGMRALNVAETVAASPAVKSAFQKAEPERHLQPLAEMIRRKTGAEYVVIGNKAGIRYSHPIPERIGKKMVGGDNRKVLQGKSIISEAVGSLGPAIRGKAPVFAENGETIGVVSVGFLIKDIEEIVWSYNVKIFFFSILALLLGVIGAIVIAQTVKRSIHGLEPKEIGLLYQEKQAILEAIREGIIAVNQDGIVTMVNKAAMAILDCQTEHSVLGQPILHIIPHSRLLEVIQTGKAEYDVEMVIGGQSVIVNRIPIMDKKGVVIGAVSTFRNKSELYRLTKELSQIKSYAEALRAQTHEFSNKLYVISGLIQLESYEEALELITKETNLQQDLVHFVMKEIPDPMLGGLLIGKFNRANELKIQLAIDRQSSFRDIPLHMDRDHLITIIGNVIDNAMEAVIENERPEKRITVFLTDLGDDLIIEIEDTGVGMTEDVREKMFERGFSTKAAAHRGYGLDLVQRSLKLLHGYMTIQTEAGKGTLCTIVIPKRGEARDVDEDSNSRINCRR
>NZ_CP015436.1|WP_044746306.1|1408228_1409755_-|transporter
MEALSFLLNGFETALQPYNLFFAFLGVLIGTAVGVLPGIGPMSGVALLIPVTASMTSGLDPAQAATSSIILLAGVYYGAMYGGSTTSILLNTPGESSSVVTTLDGYQMAKQGRAGAALAIAAIGSFVAGIVSLIGLVLVAEPLSDLALKFGPAEYFSLMILGLAAVSGLAGRSITKAWIMTLLGLLLSTIGIDNVSGVARFTYNISFLYGGLEFLTVAVGLFALGEVFKSILHREQNGGKIVKIGQVMLSKNELKESAGPIARGSLLGFLVGVLPGAGATIASFFSYIMEKKLSKMPEKFGKGTIAGVAAPESANNAASGGAMIPLLTLGIPGSGTTAILMGALMMYNVQPGPLLFDEHPDVAWGLIASMFIGNVMLLILNMPLVKVFTKIIETPTKYLLPLIIAISIFGVYAVQVTTFDVFLLIAFGVLGYLLSSYDFPLAPLVLGLVLGPMIENNMRRALTSSNGDFMVFVEKPISLVLLMIALLWIVVPFVMKLKGKSVIVNEDM
>NZ_CP015436.1|WP_044746307.1|1409767_1410223_-|tripartite-tricarboxylate-transporter-TctB-family-protein
MSKTFDRVAAIVFLAIGVLFMMESLRISKSAYGSSVGPNVFPFLLGMVLTLLSIKLLLETRRYVASGKEKEKIQYKPFLIILLSAILYVALLEKIGYVITTFLFLVVGFQTMEKGALWKSIIIAVCFSIGVYGLYVKLLQGTLPSWPVWFQ
>NZ_CP015436.1|WP_044746308.1|1410296_1411313_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MVRKRLCSMVSGLMIFLLAACGGHMTTKESGQSSNYPEKPLVFVAPSGAGGGWDLTARAITKILAETGIVNETMTVENRPGGGGVVFMAEYATQDRKNDYRLFVNSPPIIINHLKAEGNSPFGYKDTTPLAQLTKDFGAIVVKADSNIRSLSQLMNMVKKDPKSVTVAGGSAPGSMDHLIAILPIYKSGIDPKVVKYVSYDGGGEAMAALLGGNADVIATDVSSVGEYVKAGKVRVLAVSAPARLDGEFQHVPTMKELGIDAEFTIWRGVFGPKDMSPAAKAFWEEALKKLSEHEKWKEELTKQGWIFDYKNSEQFTKFLEEQEQLVSDMLKSLGMHK
>NZ_CP015436.1|WP_156487494.1|1411578_1413222_+|alkaline-phosphatase
MSVLSQKMVSIVLVGSLAVGSVAVAARDEEKKQEKAPVKNVIMMVMDGTSAGATTLARWYKGAPLALDEMASGAVRTYSAESAITDSAPAATAMATGFKSNDKYIGLLPSVVNSPGVAPVAKENVKKPVATVLEGAELQGKATGIIATSAIQHATPAGFSAHVEHRNLFPDIAEQQVYQNIEVVLGGGKEALLPGSGENNRKDHENLLNTITRKGYDIVETRDELLRSKADKIWGVFANDAMAQDMNRPYTRPDEPTLAVMTKKAIETLSKDKDGFFLFVEGSQVDWAAHANDPVGIISEVLAFDAAVKEAVSFAKKHRDTLVIAVTDHGNSGITIGNRHTDQTYPKTPVSAYIEPLKKAKMTLDGALSQLKSDQSNLEEVARLYGLDTLTPDEKKKLSESADLRKTLPELLAARANLGFTTGGHTGEDVFLYTYGPNRPIGTFENTDLARIMANAMAFDLKMVNARLFADAKKQFEAIGATVTIDQSDENHLVLTVTKGNKTAKLPANQNMMTIGNKTYELEGLNIYMAERFWVPKQAVSLFQKAR
>NZ_CP015436.1|WP_044746309.1|1413406_1414606_-|iron-containing-alcohol-dehydrogenase
MSVARLAFTSLSYVGWGALEQLLPEVRRFSPKRILVVTDPVLEKIGFIQRVTAPLIQQGYEVERYTDVVPEPPLEVGEKLVSMTRQGKFDMVIGIGGGSSLDLAKLAAVLAVHEGTVADYLNLTGTKTVQQKGLPKILIPTTSGTGSEVTNISVLSLETTKDVVTHDYLLADVAIVDPALTVTVPPRVTAATGIDALTHAVEAYVSVHANPTTDGLALQAIRLIGRSLRKAVADGNDKQARIDMSNGSYLAGLAFFHAGVAGVHALAYPLGGQFHISHGESNAVLLPYVMGYIRQSCTKRMADILNALGGNSAYLSEEEASYRCVEELERLVKEVGIPSTLGGFHIPETALESLTQDAVQQKRLLARSPLPLLEEDIRNIYQSAFIGRVTEPKRKMEKL
>NZ_CP015436.1|WP_044746310.1|1414623_1415472_-|N-acyl-homoserine-lactonase-family-protein
MTNMVKAHPKLYVMDNGRMRMDKNWMIAMHNPATIHNPHAPTEFVEFPIYTVLIDHPEGKILFDTACNPNSMGPQGRWAESTQQMFPWTASEECHLHNRLEQLKVRPEDIKFVVASHLHLDHAGCLEMFTNATIIVHEDELNGTLQCYARNQKEGAYIWADIDAWIKNHLQWRTIKRHEDHLLLAEGIRVLNFGSGHAWGMLGLHVELPETGGIILASDAVYTAESYGPPIKPPGIIYDSLGYMNTVEKIRRIAKETHSQVWFGHDSEQFKQFRKSTEGFYE
>NZ_CP015436.1|WP_044746311.1|1415804_1417502_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MKQKIIDSHIWESIFSSIHNGVIVVDRHKKILLINSSAKKLLQIENQHWEGKDIRELIPTTQLPYVLESETSSIGVKMNIAGRQCLVNRTPVYQNGELAGAISVLQDISEIEHYHSLFKQMETIIEFSTDGIYVVDKEGRTLMVNSAYEEITGFRREELIGNHMEDLVKKGYFDQSVSLLVLREKKRISILQKIGGKKDVIVTGNPVFDQQGEIEMVVTSVRDISHLIQMKAELEKAKSFFKMGHHRYTFSIDGSEEKMVFLSDSMKRIFEKVKQIAPYPTSVLLTGPSGVGKEVIANLIHHLSDRKDKPFIKVNCGAIPEPLLESELFGYEKGAFTGARKEGKIGLLELADQGTIMLDEIGEMPLSLQVKLLRVLQEKQIQRIGSHQVKTLDIRIISATNQDVRKLISQGTFREDLYYRLQVVEIHIPPLAERPEDIEPLLDHFFSFYCKLYRINKSLSPDTKSILKHYHWPGNVRELKNLIESMIVSVPSQSIEPHDLPPHIDEQPHTATSLTLKQRIEQFEKRIIGEAIQKHPSIRKAAEQLGVDHSTLVKKLKKWNMNLHQ

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Crispr_ID: NZ_CP015436_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015436_8

1419610-1419702

Orphan

Consensus_repeat	Method
ATCCACGCATCCATAAAGGATGCGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015436_8

>merge|NZ_CP015436|8|1419610-1419702|CRISPRCasFinder
ATCCACGCATCCATAAAGGATGCGACTCAATGTCGCCATGATCGAAAGCAAATTTGTTGTAATTTCAATCCACACATCCATAAAGGATGCGAC

>NZ_CP015436|8|8|1419610-1419702|CRISPRCasFinder
ATCCACGCATCCATAAAGGATGCGAC	TCAATGTCGCCATGATCGAAAGCAAATTTGTTGTAATTTCA
ATCCACACATCCATAAAGGATGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015436.1\|WP_156487493.1\|1417677_1418265_-\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|225266
NZ_CP015436.1\|WP_044746311.1\|1415804_1417502_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226350
NZ_CP015436.1\|WP_082063840.1\|1421445_1422006_+\|type-II-toxin-antitoxin-system-death-on-curing-family-toxin	unknown	unknown	gnl\|CDD\|226180
NZ_CP015436.1\|WP_044746308.1\|1410296_1411313_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270234
NZ_CP015436.1\|WP_156487494.1\|1411578_1413222_+\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|224699
NZ_CP015436.1\|WP_044746310.1\|1414623_1415472_-\|N-acyl-homoserine-lactonase-family-protein	unknown	unknown	gnl\|CDD\|293815
NZ_CP015436.1\|WP_044746313.1\|1420529_1420814_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_052661028.1\|1426093_1426396_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_156487490.1\|1426005_1426137_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377866
NZ_CP015436.1\|WP_156487492.1\|1418227_1418380_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_052661027.1\|1422845_1423454_-\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|377369
NZ_CP015436.1\|WP_044746314.1\|1422031_1422232_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_156487491.1\|1421305_1421449_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044746322.1\|1424323_1425829_-\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP015436.1\|WP_044746317.1\|1423600_1424323_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224401
NZ_CP015436.1\|WP_044746306.1\|1408228_1409755_-\|transporter	unknown	unknown	gnl\|CDD\|225870
NZ_CP015436.1\|WP_044746307.1\|1409767_1410223_-\|tripartite-tricarboxylate-transporter-TctB-family-protein	unknown	unknown	gnl\|CDD\|377815
NZ_CP015436.1\|WP_052661025.1\|1419274_1419598_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225412
NZ_CP015436.1\|WP_044746315.1\|1422339_1422576_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044746309.1\|1413406_1414606_-\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341481

Protein	Function_ID	Function_description	E-value
NZ_CP015436.1\|WP_156487493.1\|1417677_1418265_-\|PIN-domain-containing-protein	gnl\|CDD\|225266	COG2402, COG2402, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only].	0.000314055
NZ_CP015436.1\|WP_044746311.1\|1415804_1417502_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	5.31844e-176
NZ_CP015436.1\|WP_082063840.1\|1421445_1422006_+\|type-II-toxin-antitoxin-system-death-on-curing-family-toxin	gnl\|CDD\|226180	COG3654, Doc, Prophage maintenance system killer protein [General function prediction only].	4.68739e-12
NZ_CP015436.1\|WP_044746308.1\|1410296_1411313_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	3.01136e-88
NZ_CP015436.1\|WP_156487494.1\|1411578_1413222_+\|alkaline-phosphatase	gnl\|CDD\|224699	COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and metabolism].	4.84873e-122
NZ_CP015436.1\|WP_044746310.1\|1414623_1415472_-\|N-acyl-homoserine-lactonase-family-protein	gnl\|CDD\|293815	cd07729, AHL_lactonase_MBL-fold, quorum-quenching N-acyl-homoserine lactonase, MBL-fold metallo-hydrolase domain. Acyl Homoserine Lactones (also known as AHLs) are signal molecules which coordinate gene expression in quorum sensing, in many Gram-negative bacteria. Quorum-quenching N-acyl-homoserine lactonase (also known as AHL lactonase, N-acyl-L-homoserine lactone hydrolase, EC 3.1.1.81) catalyzes the hydrolysis and opening of the homoserine lactone rings of AHLs, a reaction that can block quorum sensing. These enzymes belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	3.86761e-72
NZ_CP015436.1\|WP_044746309.1\|1413406_1414606_-\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341481	cd08551, Fe-ADH, iron-containing alcohol dehydrogenases (Fe-ADH)-like. This family contains large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases, insect-type, or short-chain alcohol dehydrogenases, iron-containing alcohol dehydrogenases, among others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.	1.617e-178
NZ_CP015436.1\|WP_156487490.1\|1426005_1426137_-\|hypothetical-protein	gnl\|CDD\|377866	pfam07553, Lipoprotein_Ltp, Host cell surface-exposed lipoprotein. This is a family of lipoproteins that is involved in superinfection exclusion. Proteins in this family have been shown to act at the stage of DNA release from the phage head into the cell.	3.07389e-16
NZ_CP015436.1\|WP_052661027.1\|1422845_1423454_-\|restriction-endonuclease	gnl\|CDD\|377369	pfam04471, Mrr_cat, Restriction endonuclease. Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.	2.25422e-26
NZ_CP015436.1\|WP_044746306.1\|1408228_1409755_-\|transporter	gnl\|CDD\|225870	COG3333, COG3333, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP015436.1\|WP_044746307.1\|1409767_1410223_-\|tripartite-tricarboxylate-transporter-TctB-family-protein	gnl\|CDD\|377815	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family. This family consists of several hypothetical bacterial proteins of around 150 residues in length. This family was formerly known as DUF1468.	2.82191e-10
NZ_CP015436.1\|WP_052661025.1\|1419274_1419598_-\|hypothetical-protein	gnl\|CDD\|225412	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism].	6.11092e-06
NZ_CP015436.1\|WP_044746317.1\|1423600_1424323_-\|ATP-binding-protein	gnl\|CDD\|224401	COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair].	3.7234e-60
NZ_CP015436.1\|WP_044746322.1\|1424323_1425829_-\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.53451e-31

>NZ_CP015436.1|WP_052661025.1|1419274_1419598_-|hypothetical-protein
MNGRDGKAAQMFILAREFAHVWYEASAVFDLANLQPADVEIESVCNQDAAEFLAPEDEVLQACPVHCTKLPAILNSLKLGAARRTLDLNLITKKEFFSFYEAYVKRL
>NZ_CP015436.1|WP_156487492.1|1418227_1418380_-|hypothetical-protein
MNATAIKKIDKSKNKGLTKNKKELLKKHMGSASSKIDMNDVRHWWKYENH
>NZ_CP015436.1|WP_156487493.1|1417677_1418265_-|PIN-domain-containing-protein
MMFAIGGSMRIIDFNHPEFQGFSEGEDILIDTGVWFAFYNQYDAYHSTVKRLFDKHVLHNEKNLFLYINPTIVNEITHLASTPLKKYLDFFPEKKNIFTNSDIEIIEKTITNGIKELIEKEVISILDGNKESVIKQISLYKELGSADAVNSSIANLYGISFLTVDKRLAENIFNQRSQLSNITNVYYTTGKNRDY
>NZ_CP015436.1|WP_044746311.1|1415804_1417502_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MKQKIIDSHIWESIFSSIHNGVIVVDRHKKILLINSSAKKLLQIENQHWEGKDIRELIPTTQLPYVLESETSSIGVKMNIAGRQCLVNRTPVYQNGELAGAISVLQDISEIEHYHSLFKQMETIIEFSTDGIYVVDKEGRTLMVNSAYEEITGFRREELIGNHMEDLVKKGYFDQSVSLLVLREKKRISILQKIGGKKDVIVTGNPVFDQQGEIEMVVTSVRDISHLIQMKAELEKAKSFFKMGHHRYTFSIDGSEEKMVFLSDSMKRIFEKVKQIAPYPTSVLLTGPSGVGKEVIANLIHHLSDRKDKPFIKVNCGAIPEPLLESELFGYEKGAFTGARKEGKIGLLELADQGTIMLDEIGEMPLSLQVKLLRVLQEKQIQRIGSHQVKTLDIRIISATNQDVRKLISQGTFREDLYYRLQVVEIHIPPLAERPEDIEPLLDHFFSFYCKLYRINKSLSPDTKSILKHYHWPGNVRELKNLIESMIVSVPSQSIEPHDLPPHIDEQPHTATSLTLKQRIEQFEKRIIGEAIQKHPSIRKAAEQLGVDHSTLVKKLKKWNMNLHQ
>NZ_CP015436.1|WP_044746310.1|1414623_1415472_-|N-acyl-homoserine-lactonase-family-protein
MTNMVKAHPKLYVMDNGRMRMDKNWMIAMHNPATIHNPHAPTEFVEFPIYTVLIDHPEGKILFDTACNPNSMGPQGRWAESTQQMFPWTASEECHLHNRLEQLKVRPEDIKFVVASHLHLDHAGCLEMFTNATIIVHEDELNGTLQCYARNQKEGAYIWADIDAWIKNHLQWRTIKRHEDHLLLAEGIRVLNFGSGHAWGMLGLHVELPETGGIILASDAVYTAESYGPPIKPPGIIYDSLGYMNTVEKIRRIAKETHSQVWFGHDSEQFKQFRKSTEGFYE
>NZ_CP015436.1|WP_044746309.1|1413406_1414606_-|iron-containing-alcohol-dehydrogenase
MSVARLAFTSLSYVGWGALEQLLPEVRRFSPKRILVVTDPVLEKIGFIQRVTAPLIQQGYEVERYTDVVPEPPLEVGEKLVSMTRQGKFDMVIGIGGGSSLDLAKLAAVLAVHEGTVADYLNLTGTKTVQQKGLPKILIPTTSGTGSEVTNISVLSLETTKDVVTHDYLLADVAIVDPALTVTVPPRVTAATGIDALTHAVEAYVSVHANPTTDGLALQAIRLIGRSLRKAVADGNDKQARIDMSNGSYLAGLAFFHAGVAGVHALAYPLGGQFHISHGESNAVLLPYVMGYIRQSCTKRMADILNALGGNSAYLSEEEASYRCVEELERLVKEVGIPSTLGGFHIPETALESLTQDAVQQKRLLARSPLPLLEEDIRNIYQSAFIGRVTEPKRKMEKL
>NZ_CP015436.1|WP_156487494.1|1411578_1413222_+|alkaline-phosphatase
MSVLSQKMVSIVLVGSLAVGSVAVAARDEEKKQEKAPVKNVIMMVMDGTSAGATTLARWYKGAPLALDEMASGAVRTYSAESAITDSAPAATAMATGFKSNDKYIGLLPSVVNSPGVAPVAKENVKKPVATVLEGAELQGKATGIIATSAIQHATPAGFSAHVEHRNLFPDIAEQQVYQNIEVVLGGGKEALLPGSGENNRKDHENLLNTITRKGYDIVETRDELLRSKADKIWGVFANDAMAQDMNRPYTRPDEPTLAVMTKKAIETLSKDKDGFFLFVEGSQVDWAAHANDPVGIISEVLAFDAAVKEAVSFAKKHRDTLVIAVTDHGNSGITIGNRHTDQTYPKTPVSAYIEPLKKAKMTLDGALSQLKSDQSNLEEVARLYGLDTLTPDEKKKLSESADLRKTLPELLAARANLGFTTGGHTGEDVFLYTYGPNRPIGTFENTDLARIMANAMAFDLKMVNARLFADAKKQFEAIGATVTIDQSDENHLVLTVTKGNKTAKLPANQNMMTIGNKTYELEGLNIYMAERFWVPKQAVSLFQKAR
>NZ_CP015436.1|WP_044746308.1|1410296_1411313_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MVRKRLCSMVSGLMIFLLAACGGHMTTKESGQSSNYPEKPLVFVAPSGAGGGWDLTARAITKILAETGIVNETMTVENRPGGGGVVFMAEYATQDRKNDYRLFVNSPPIIINHLKAEGNSPFGYKDTTPLAQLTKDFGAIVVKADSNIRSLSQLMNMVKKDPKSVTVAGGSAPGSMDHLIAILPIYKSGIDPKVVKYVSYDGGGEAMAALLGGNADVIATDVSSVGEYVKAGKVRVLAVSAPARLDGEFQHVPTMKELGIDAEFTIWRGVFGPKDMSPAAKAFWEEALKKLSEHEKWKEELTKQGWIFDYKNSEQFTKFLEEQEQLVSDMLKSLGMHK
>NZ_CP015436.1|WP_044746307.1|1409767_1410223_-|tripartite-tricarboxylate-transporter-TctB-family-protein
MSKTFDRVAAIVFLAIGVLFMMESLRISKSAYGSSVGPNVFPFLLGMVLTLLSIKLLLETRRYVASGKEKEKIQYKPFLIILLSAILYVALLEKIGYVITTFLFLVVGFQTMEKGALWKSIIIAVCFSIGVYGLYVKLLQGTLPSWPVWFQ
>NZ_CP015436.1|WP_044746306.1|1408228_1409755_-|transporter
MEALSFLLNGFETALQPYNLFFAFLGVLIGTAVGVLPGIGPMSGVALLIPVTASMTSGLDPAQAATSSIILLAGVYYGAMYGGSTTSILLNTPGESSSVVTTLDGYQMAKQGRAGAALAIAAIGSFVAGIVSLIGLVLVAEPLSDLALKFGPAEYFSLMILGLAAVSGLAGRSITKAWIMTLLGLLLSTIGIDNVSGVARFTYNISFLYGGLEFLTVAVGLFALGEVFKSILHREQNGGKIVKIGQVMLSKNELKESAGPIARGSLLGFLVGVLPGAGATIASFFSYIMEKKLSKMPEKFGKGTIAGVAAPESANNAASGGAMIPLLTLGIPGSGTTAILMGALMMYNVQPGPLLFDEHPDVAWGLIASMFIGNVMLLILNMPLVKVFTKIIETPTKYLLPLIIAISIFGVYAVQVTTFDVFLLIAFGVLGYLLSSYDFPLAPLVLGLVLGPMIENNMRRALTSSNGDFMVFVEKPISLVLLMIALLWIVVPFVMKLKGKSVIVNEDM
>NZ_CP015436.1|WP_044746313.1|1420529_1420814_-|hypothetical-protein
MDDLLRCVKGYLEGDLLPERFSYDFLAMYVSHFDDGDLAERYIDALDDISEACGWYEPNPDHRKDYKDYIGEEELKQVVQEKYQAIKSLLDKST
>NZ_CP015436.1|WP_156487491.1|1421305_1421449_+|hypothetical-protein
MFQNDLILEDVMRKEINKSNGKDAKLQKIAAKVIKRNYKGLKRLSKN
>NZ_CP015436.1|WP_082063840.1|1421445_1422006_+|type-II-toxin-antitoxin-system-death-on-curing-family-toxin
MKIESLRPEHIRMFHDMALKEFGGLPGEHEPSLIDSLAYKPFQIYNFGGHTYEPYPGLFMKAAVYMHTLSSNQYFVDGNKRTAYITAASFLELNGYVVVISDWELYFASKLVANKKWSLETLAGWLEINSVPESQYTEDMEPSKETLLQLYKEYIDLLNELEIQEILTEEEVEERKELQKLLDDMQ
>NZ_CP015436.1|WP_044746314.1|1422031_1422232_+|hypothetical-protein
MKVKVIANKPDTRPRTGAQLPIEHLIGKIYEVKYYDKEDQSVTVYEESFGGDIVLNKNEYEIMKAH
>NZ_CP015436.1|WP_044746315.1|1422339_1422576_+|hypothetical-protein
MLYKFSELSDQAKKVAVEEYILDAKLFGFWDDGQTEKDVYELLASPWETHRYDENGVLQGKVRYLDHNQIEFIETGEY
>NZ_CP015436.1|WP_052661027.1|1422845_1423454_-|restriction-endonuclease
MIVFEIALGIVILTAAIHFWITKRRYEYQTSFIAKQMEHSLEMEKILEMGLYFCFCQENNNDGKQKRYSKIYIKQDPLQFENFCAQVMEKKYGGTTWVSQASGDFGVDFEHRRDDGLYLGQVKCYEGDLSYDPIARLHSNMVKSGANGGYVVTTGSFSENARKFAEGLNIELIDGVKLVEYWLDGLKQSENIFNNFFLFLIF
>NZ_CP015436.1|WP_044746317.1|1423600_1424323_-|ATP-binding-protein
METQMKEYAKKLKLSWIPANYQTIQAETHEEYLLKLFEHEVQHRGERRINLLLKQATLPKIPNKPFDWKDIQLAPGITREYVLQGDFIENQENLIFYGGVGTGKTFLSTLISINTIKKKGKKVKFYTAAALVNALLEANDKGSLGKFLKQIEKLDLLVIDELGYIPLHKQGAELLFQIISMCYEAKSIIVTTNLQFGQWNNIFGDPILTEAVIDRLIHHSHLIIFKGDSHRYKDSISLNQ
>NZ_CP015436.1|WP_044746322.1|1424323_1425829_-|IS21-family-transposase
MLAVAEIDYIRYEANQKGCSYSDIAKRTNHDPRTIKKYAEMEDFSPTKRKQTRKARVMDLVKPILDKWIQEDLTKKKKFRRTAKRMYEMLKEQFDFKGSDRSVRLYVAKRKKELQEQSESAALPLEAKPATAQVDFGEAPLVYKGERVILPFLALSFPYSNGFYFQVMPSQNRECFLEGLKRIFHYMGRVPKVIRFDNLSPAVKKILPNGERELTEEFQRFVLHYGFECEFCNPASGNEKGHVEAKVKYIRNNFLLPELTIYDLESFNDSLWEKCERDWQRPHYQKGKTIAGLFEEEKECFLQLPAKEYECVRYEQVRADKYGYIRVENKLYSTSPRFAKQMVLAKISYQEIEILTEDYELIVKHERLYGTQQKSMKWQPYLILMAKRPNALKYTDFYEKMPSEWQNYFSHCTIQEKQKTLQLLAVLLKEHDFEISTQALRLASQYGHPSVDSIKQVFYQLINGRGIREPIQPKISVPTMPEASRGLSHYDRFFESTGGER
>NZ_CP015436.1|WP_156487490.1|1426005_1426137_-|hypothetical-protein
MKKAQTYAETMSMSDSAIDEQLISENGEKFTPEEAQYAIDNLK
>NZ_CP015436.1|WP_052661028.1|1426093_1426396_-|hypothetical-protein
MQLPEELDLISVFGSIAKRKDETEPFYYDTSTFVLENDKELLEITFSPFYNEFTLIVKDRETKETVSYFELLSVRKLEIMELGRERVEKSANLCRNDEYV

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Crispr_ID: NZ_CP015436_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015436_9

1426765-1428193

Orphan

Consensus_repeat	Method
GTTTTTATCTTAACTATGAGGAATTGAAAC	PILER-CR
GTTTCAATTCCTCATAGTTAAGATAAAAAC	CRISPRCasFinder
GTTTCAATTCCTCATAGTTAAGATAAAAAC	CRT

21 spacers

The CRISPR arrays of NZ_CP015436_9

>merge|NZ_CP015436|9|1426765-1428193|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATTCCTCATAGTTAAGATAAAAACGTTTTGCTTCGGGCTTGCGACTTCCTAAAACCAAGTTAGTTTCAATTCCTCATAGTTAAGATAAAAACATGAAAAAAATGGCCATGATTTTAGCGGTCATCGTAGCGTTTCAATTCCTCATAGTTAAGATAAAAACTATCTAGCGGCGACGGGATTATGAGAGTGGAGAAAAGTTTCAATTCCTCATAGTTAAGATAAAAACAAAGCGGCCAATGTAAATGAGCAAGCCCCTACTGCGCGTTTCAATTCCTCATAGTTAAGATAAAAACAAGAAATCACAGGGGAACCATACGTAGTAGGTTTTGTTTCAATTCCTCATAGTTAAGATAAAAACTTGACGTGCCGCACTGTCGATATCTGTAGCAGATTGTTTCAATTCCTCATAGTTAAGATAAAAACTTCCATCAGGCAATAGTGAAAGCTCTTTTACTTTTTCGTTTCAATTCCTCATAGTTAAGATAAAAACTTCCATCAGGCAATAGTGAAAGCTCTTTTACTTTTTCGTTTCAATTCCTCATAGTTAAGATAAAAACTCTGGTTTGTATCCGTACACCTTCCAGCCTTTTTCTTGTTTCAATTCCTCATAGTTAAGATAAAAACTGTTGTGTCGATGCTAGTCGCCCAAGCCGTTCCACAGTTTCAATTCCTCATAGTTAAGATAAAAACTTTAAAGCACGTATCTTTTATAAATTGGCATTTATTTGTTTCAATTCCTCATAGTTAAGATAAAAACGAATACATGAACCGAATGGTGCGTGCAGTGAATCGTCGTTTCAATTCCTCATAGTTAAGATAAAAACCTTTGCGACTTCTTCCGAATTTTCTTTCAATGCTCTTTCGTTTCAATTCCTCATAGTTAAGATAAAAACCCAAGCATTCGCCATGTCAGCGCGTTGGTCAAGAGGTTTCAATTCCTCATAGTTAAGATAAAAACTACTTTGGTGAAATCCAATCTTGTTGAAATATTGAATGTTTCAATTCCTCATAGTTAAGATAAAAACACAGAAGTGTGCAACTCCGTCATCGACTTACTCGCGTTTCAATTCCTCATAGTTAAGATAAAAACAGCTTGTCCTCGGTTAGCTTCCGAGTAATTTATAGTTTCAATTCCTCATAGTTAAGATAAAAACGACTCATAAAACCTCATGGCAGCATCGCGGTTTGGGGTGTTTCAATTCCTCATAGTTAAGATAAAAACGCACCAATTATTGCTACCATTAGTCCAAGTAATGTAGTTTCAATTCCTCATAGTTAAGATAAAAACGGGAAACAAAAGAATTGTTTAAAGCGGCTATACAGAGGTTTCAATTCCTCATAGTTAAGATAAAAACAGGTAGTCTTTCTGCTGAAGATCGTTTGGCTAATGGTGGTTTCAATTCCTCATAGTTAAGATAAAAAC

>NZ_CP015436|9|8|1426765-1428193|PILER-CR
GTTTCAATTCCTCATAGTTAAGATAAAAAC	GTTTTGCTTCGGGCTTGCGACTTCCTAAAACCAAGTTA
GTTTCAATTCCTCATAGTTAAGATAAAAAC	ATGAAAAAAATGGCCATGATTTTAGCGGTCATCGTAGC
GTTTCAATTCCTCATAGTTAAGATAAAAAC	TATCTAGCGGCGACGGGATTATGAGAGTGGAGAAAA
GTTTCAATTCCTCATAGTTAAGATAAAAAC	AAAGCGGCCAATGTAAATGAGCAAGCCCCTACTGCGC
GTTTCAATTCCTCATAGTTAAGATAAAAAC	AAGAAATCACAGGGGAACCATACGTAGTAGGTTTT
GTTTCAATTCCTCATAGTTAAGATAAAAAC	TTGACGTGCCGCACTGTCGATATCTGTAGCAGATT
GTTTCAATTCCTCATAGTTAAGATAAAAAC	TTCCATCAGGCAATAGTGAAAGCTCTTTTACTTTTTC
GTTTCAATTCCTCATAGTTAAGATAAAAAC	TTCCATCAGGCAATAGTGAAAGCTCTTTTACTTTTTC
GTTTCAATTCCTCATAGTTAAGATAAAAAC	TCTGGTTTGTATCCGTACACCTTCCAGCCTTTTTCTT
GTTTCAATTCCTCATAGTTAAGATAAAAAC	TGTTGTGTCGATGCTAGTCGCCCAAGCCGTTCCACA
GTTTCAATTCCTCATAGTTAAGATAAAAAC	TTTAAAGCACGTATCTTTTATAAATTGGCATTTATTT
GTTTCAATTCCTCATAGTTAAGATAAAAAC	GAATACATGAACCGAATGGTGCGTGCAGTGAATCGTC
GTTTCAATTCCTCATAGTTAAGATAAAAAC	CTTTGCGACTTCTTCCGAATTTTCTTTCAATGCTCTTTC
GTTTCAATTCCTCATAGTTAAGATAAAAAC	CCAAGCATTCGCCATGTCAGCGCGTTGGTCAAGAG
GTTTCAATTCCTCATAGTTAAGATAAAAAC	TACTTTGGTGAAATCCAATCTTGTTGAAATATTGAAT
GTTTCAATTCCTCATAGTTAAGATAAAAAC	ACAGAAGTGTGCAACTCCGTCATCGACTTACTCGC
GTTTCAATTCCTCATAGTTAAGATAAAAAC	AGCTTGTCCTCGGTTAGCTTCCGAGTAATTTATA
GTTTCAATTCCTCATAGTTAAGATAAAAAC	GACTCATAAAACCTCATGGCAGCATCGCGGTTTGGGGT
GTTTCAATTCCTCATAGTTAAGATAAAAAC	GCACCAATTATTGCTACCATTAGTCCAAGTAATGTA
GTTTCAATTCCTCATAGTTAAGATAAAAAC	GGGAAACAAAAGAATTGTTTAAAGCGGCTATACAGAG
GTTTCAATTCCTCATAGTTAAGATAAAAAC	AGGTAGTCTTTCTGCTGAAGATCGTTTGGCTAATGGTG
GTTTCAATTCCTCATAGTTAAGATAAAAAC

>NZ_CP015436|9|9|1426765-1428193|CRISPRCasFinder
GTTTCAATTCCTCATAGTTAAGATAAAAAC	GTTTTGCTTCGGGCTTGCGACTTCCTAAAACCAAGTTA
GTTTCAATTCCTCATAGTTAAGATAAAAAC	ATGAAAAAAATGGCCATGATTTTAGCGGTCATCGTAGC
GTTTCAATTCCTCATAGTTAAGATAAAAAC	TATCTAGCGGCGACGGGATTATGAGAGTGGAGAAAA
GTTTCAATTCCTCATAGTTAAGATAAAAAC	AAAGCGGCCAATGTAAATGAGCAAGCCCCTACTGCGC
GTTTCAATTCCTCATAGTTAAGATAAAAAC	AAGAAATCACAGGGGAACCATACGTAGTAGGTTTT
GTTTCAATTCCTCATAGTTAAGATAAAAAC	TTGACGTGCCGCACTGTCGATATCTGTAGCAGATT
GTTTCAATTCCTCATAGTTAAGATAAAAAC	TTCCATCAGGCAATAGTGAAAGCTCTTTTACTTTTTC
GTTTCAATTCCTCATAGTTAAGATAAAAAC	TTCCATCAGGCAATAGTGAAAGCTCTTTTACTTTTTC
GTTTCAATTCCTCATAGTTAAGATAAAAAC	TCTGGTTTGTATCCGTACACCTTCCAGCCTTTTTCTT
GTTTCAATTCCTCATAGTTAAGATAAAAAC	TGTTGTGTCGATGCTAGTCGCCCAAGCCGTTCCACA
GTTTCAATTCCTCATAGTTAAGATAAAAAC	TTTAAAGCACGTATCTTTTATAAATTGGCATTTATTT
GTTTCAATTCCTCATAGTTAAGATAAAAAC	GAATACATGAACCGAATGGTGCGTGCAGTGAATCGTC
GTTTCAATTCCTCATAGTTAAGATAAAAAC	CTTTGCGACTTCTTCCGAATTTTCTTTCAATGCTCTTTC
GTTTCAATTCCTCATAGTTAAGATAAAAAC	CCAAGCATTCGCCATGTCAGCGCGTTGGTCAAGAG
GTTTCAATTCCTCATAGTTAAGATAAAAAC	TACTTTGGTGAAATCCAATCTTGTTGAAATATTGAAT
GTTTCAATTCCTCATAGTTAAGATAAAAAC	ACAGAAGTGTGCAACTCCGTCATCGACTTACTCGC
GTTTCAATTCCTCATAGTTAAGATAAAAAC	AGCTTGTCCTCGGTTAGCTTCCGAGTAATTTATA
GTTTCAATTCCTCATAGTTAAGATAAAAAC	GACTCATAAAACCTCATGGCAGCATCGCGGTTTGGGGT
GTTTCAATTCCTCATAGTTAAGATAAAAAC	GCACCAATTATTGCTACCATTAGTCCAAGTAATGTA
GTTTCAATTCCTCATAGTTAAGATAAAAAC	GGGAAACAAAAGAATTGTTTAAAGCGGCTATACAGAG
GTTTCAATTCCTCATAGTTAAGATAAAAAC	AGGTAGTCTTTCTGCTGAAGATCGTTTGGCTAATGGTG
GTTTCAATTCCTCATAGTTAAGATAAAAAC

>NZ_CP015436|9|8|1426765-1428193|CRT
GTTTCAATTCCTCATAGTTAAGATAAAAAC	GTTTTGCTTCGGGCTTGCGACTTCCTAAAACCAAGTTA
GTTTCAATTCCTCATAGTTAAGATAAAAAC	ATGAAAAAAATGGCCATGATTTTAGCGGTCATCGTAGC
GTTTCAATTCCTCATAGTTAAGATAAAAAC	TATCTAGCGGCGACGGGATTATGAGAGTGGAGAAAA
GTTTCAATTCCTCATAGTTAAGATAAAAAC	AAAGCGGCCAATGTAAATGAGCAAGCCCCTACTGCGC
GTTTCAATTCCTCATAGTTAAGATAAAAAC	AAGAAATCACAGGGGAACCATACGTAGTAGGTTTT
GTTTCAATTCCTCATAGTTAAGATAAAAAC	TTGACGTGCCGCACTGTCGATATCTGTAGCAGATT
GTTTCAATTCCTCATAGTTAAGATAAAAAC	TTCCATCAGGCAATAGTGAAAGCTCTTTTACTTTTTC
GTTTCAATTCCTCATAGTTAAGATAAAAAC	TTCCATCAGGCAATAGTGAAAGCTCTTTTACTTTTTC
GTTTCAATTCCTCATAGTTAAGATAAAAAC	TCTGGTTTGTATCCGTACACCTTCCAGCCTTTTTCTT
GTTTCAATTCCTCATAGTTAAGATAAAAAC	TGTTGTGTCGATGCTAGTCGCCCAAGCCGTTCCACA
GTTTCAATTCCTCATAGTTAAGATAAAAAC	TTTAAAGCACGTATCTTTTATAAATTGGCATTTATTT
GTTTCAATTCCTCATAGTTAAGATAAAAAC	GAATACATGAACCGAATGGTGCGTGCAGTGAATCGTC
GTTTCAATTCCTCATAGTTAAGATAAAAAC	CTTTGCGACTTCTTCCGAATTTTCTTTCAATGCTCTTTC
GTTTCAATTCCTCATAGTTAAGATAAAAAC	CCAAGCATTCGCCATGTCAGCGCGTTGGTCAAGAG
GTTTCAATTCCTCATAGTTAAGATAAAAAC	TACTTTGGTGAAATCCAATCTTGTTGAAATATTGAAT
GTTTCAATTCCTCATAGTTAAGATAAAAAC	ACAGAAGTGTGCAACTCCGTCATCGACTTACTCGC
GTTTCAATTCCTCATAGTTAAGATAAAAAC	AGCTTGTCCTCGGTTAGCTTCCGAGTAATTTATA
GTTTCAATTCCTCATAGTTAAGATAAAAAC	GACTCATAAAACCTCATGGCAGCATCGCGGTTTGGGGT
GTTTCAATTCCTCATAGTTAAGATAAAAAC	GCACCAATTATTGCTACCATTAGTCCAAGTAATGTA
GTTTCAATTCCTCATAGTTAAGATAAAAAC	GGGAAACAAAAGAATTGTTTAAAGCGGCTATACAGAG
GTTTCAATTCCTCATAGTTAAGATAAAAAC	AGGTAGTCTTTCTGCTGAAGATCGTTTGGCTAATGGTG
GTTTCAATTCCTCATAGTTAAGATAAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015436.1\|WP_052661027.1\|1422845_1423454_-\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|377369
NZ_CP015436.1\|WP_044746315.1\|1422339_1422576_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044745824.1\|1430936_1431821_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP015436.1\|WP_066329512.1\|1430730_1430919_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044746322.1\|1424323_1425829_-\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP015436.1\|WP_044745820.1\|1434762_1436610_-\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|366411
NZ_CP015436.1\|WP_044745818.1\|1437649_1438123_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044745819.1\|1437023_1437230_+\|metal-ABC-transporter-ATPase	unknown	unknown	gnl\|CDD\|225328
NZ_CP015436.1\|WP_044746313.1\|1420529_1420814_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_052661028.1\|1426093_1426396_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_156487490.1\|1426005_1426137_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377866
NZ_CP015436.1\|WP_044745817.1\|1438674_1439463_-\|YhfC-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|337619
NZ_CP015436.1\|WP_044746314.1\|1422031_1422232_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_156487489.1\|1429683_1429842_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_156487491.1\|1421305_1421449_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044745823.1\|1431944_1433135_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341042
NZ_CP015436.1\|WP_044745822.1\|1433724_1434387_-\|DUF975-family-protein	unknown	unknown	gnl\|CDD\|283754
NZ_CP015436.1\|WP_044745827.1\|1428788_1429214_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239217
NZ_CP015436.1\|WP_082063840.1\|1421445_1422006_+\|type-II-toxin-antitoxin-system-death-on-curing-family-toxin	unknown	unknown	gnl\|CDD\|226180
NZ_CP015436.1\|WP_044746317.1\|1423600_1424323_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224401

Protein	Function_ID	Function_description	E-value
NZ_CP015436.1\|WP_052661027.1\|1422845_1423454_-\|restriction-endonuclease	gnl\|CDD\|377369	pfam04471, Mrr_cat, Restriction endonuclease. Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.	2.25422e-26
NZ_CP015436.1\|WP_044745823.1\|1431944_1433135_+\|MFS-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.06496e-84
NZ_CP015436.1\|WP_044745822.1\|1433724_1434387_-\|DUF975-family-protein	gnl\|CDD\|283754	pfam06161, DUF975, Protein of unknown function (DUF975). Family of uncharacterized bacterial proteins.	3.19483e-26
NZ_CP015436.1\|WP_044746322.1\|1424323_1425829_-\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.53451e-31
NZ_CP015436.1\|WP_044745819.1\|1437023_1437230_+\|metal-ABC-transporter-ATPase	gnl\|CDD\|225328	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism].	0.00784071
NZ_CP015436.1\|WP_156487490.1\|1426005_1426137_-\|hypothetical-protein	gnl\|CDD\|377866	pfam07553, Lipoprotein_Ltp, Host cell surface-exposed lipoprotein. This is a family of lipoproteins that is involved in superinfection exclusion. Proteins in this family have been shown to act at the stage of DNA release from the phage head into the cell.	3.07389e-16
NZ_CP015436.1\|WP_044745824.1\|1430936_1431821_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.49306e-52
NZ_CP015436.1\|WP_044745820.1\|1434762_1436610_-\|sodium:proton-antiporter	gnl\|CDD\|366411	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family. Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family.	1.25667e-60
NZ_CP015436.1\|WP_044745817.1\|1438674_1439463_-\|YhfC-family-intramembrane-metalloprotease	gnl\|CDD\|337619	pfam10086, DUF2324, Putative membrane peptidase family (DUF2324). This domain, found in various hypothetical bacterial proteins, has no known function. This family appears to be related to the prenyl protease 2 family pfam02517, suggesting this family may be peptidases.	8.2368e-78
NZ_CP015436.1\|WP_044745827.1\|1428788_1429214_-\|NUDIX-hydrolase	gnl\|CDD\|239217	cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.	5.60324e-18
NZ_CP015436.1\|WP_082063840.1\|1421445_1422006_+\|type-II-toxin-antitoxin-system-death-on-curing-family-toxin	gnl\|CDD\|226180	COG3654, Doc, Prophage maintenance system killer protein [General function prediction only].	4.68739e-12
NZ_CP015436.1\|WP_044746317.1\|1423600_1424323_-\|ATP-binding-protein	gnl\|CDD\|224401	COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair].	3.7234e-60

>NZ_CP015436.1|WP_052661028.1|1426093_1426396_-|hypothetical-protein
MQLPEELDLISVFGSIAKRKDETEPFYYDTSTFVLENDKELLEITFSPFYNEFTLIVKDRETKETVSYFELLSVRKLEIMELGRERVEKSANLCRNDEYV
>NZ_CP015436.1|WP_156487490.1|1426005_1426137_-|hypothetical-protein
MKKAQTYAETMSMSDSAIDEQLISENGEKFTPEEAQYAIDNLK
>NZ_CP015436.1|WP_044746322.1|1424323_1425829_-|IS21-family-transposase
MLAVAEIDYIRYEANQKGCSYSDIAKRTNHDPRTIKKYAEMEDFSPTKRKQTRKARVMDLVKPILDKWIQEDLTKKKKFRRTAKRMYEMLKEQFDFKGSDRSVRLYVAKRKKELQEQSESAALPLEAKPATAQVDFGEAPLVYKGERVILPFLALSFPYSNGFYFQVMPSQNRECFLEGLKRIFHYMGRVPKVIRFDNLSPAVKKILPNGERELTEEFQRFVLHYGFECEFCNPASGNEKGHVEAKVKYIRNNFLLPELTIYDLESFNDSLWEKCERDWQRPHYQKGKTIAGLFEEEKECFLQLPAKEYECVRYEQVRADKYGYIRVENKLYSTSPRFAKQMVLAKISYQEIEILTEDYELIVKHERLYGTQQKSMKWQPYLILMAKRPNALKYTDFYEKMPSEWQNYFSHCTIQEKQKTLQLLAVLLKEHDFEISTQALRLASQYGHPSVDSIKQVFYQLINGRGIREPIQPKISVPTMPEASRGLSHYDRFFESTGGER
>NZ_CP015436.1|WP_044746317.1|1423600_1424323_-|ATP-binding-protein
METQMKEYAKKLKLSWIPANYQTIQAETHEEYLLKLFEHEVQHRGERRINLLLKQATLPKIPNKPFDWKDIQLAPGITREYVLQGDFIENQENLIFYGGVGTGKTFLSTLISINTIKKKGKKVKFYTAAALVNALLEANDKGSLGKFLKQIEKLDLLVIDELGYIPLHKQGAELLFQIISMCYEAKSIIVTTNLQFGQWNNIFGDPILTEAVIDRLIHHSHLIIFKGDSHRYKDSISLNQ
>NZ_CP015436.1|WP_052661027.1|1422845_1423454_-|restriction-endonuclease
MIVFEIALGIVILTAAIHFWITKRRYEYQTSFIAKQMEHSLEMEKILEMGLYFCFCQENNNDGKQKRYSKIYIKQDPLQFENFCAQVMEKKYGGTTWVSQASGDFGVDFEHRRDDGLYLGQVKCYEGDLSYDPIARLHSNMVKSGANGGYVVTTGSFSENARKFAEGLNIELIDGVKLVEYWLDGLKQSENIFNNFFLFLIF
>NZ_CP015436.1|WP_044746315.1|1422339_1422576_+|hypothetical-protein
MLYKFSELSDQAKKVAVEEYILDAKLFGFWDDGQTEKDVYELLASPWETHRYDENGVLQGKVRYLDHNQIEFIETGEY
>NZ_CP015436.1|WP_044746314.1|1422031_1422232_+|hypothetical-protein
MKVKVIANKPDTRPRTGAQLPIEHLIGKIYEVKYYDKEDQSVTVYEESFGGDIVLNKNEYEIMKAH
>NZ_CP015436.1|WP_082063840.1|1421445_1422006_+|type-II-toxin-antitoxin-system-death-on-curing-family-toxin
MKIESLRPEHIRMFHDMALKEFGGLPGEHEPSLIDSLAYKPFQIYNFGGHTYEPYPGLFMKAAVYMHTLSSNQYFVDGNKRTAYITAASFLELNGYVVVISDWELYFASKLVANKKWSLETLAGWLEINSVPESQYTEDMEPSKETLLQLYKEYIDLLNELEIQEILTEEEVEERKELQKLLDDMQ
>NZ_CP015436.1|WP_156487491.1|1421305_1421449_+|hypothetical-protein
MFQNDLILEDVMRKEINKSNGKDAKLQKIAAKVIKRNYKGLKRLSKN
>NZ_CP015436.1|WP_044746313.1|1420529_1420814_-|hypothetical-protein
MDDLLRCVKGYLEGDLLPERFSYDFLAMYVSHFDDGDLAERYIDALDDISEACGWYEPNPDHRKDYKDYIGEEELKQVVQEKYQAIKSLLDKST
>NZ_CP015436.1|WP_044745827.1|1428788_1429214_-|NUDIX-hydrolase
MRIRKCSRAVIINEFNRVLLQKFEFKDVIGNKVLWVTPGGGIKENETPVEALKRELSEELGIVVDIHDKPIFEMDVLIEGKKDSFISREIYYKIAIQSDTILSIENMTKNEKDTFIELRWWSKEELKRIDNFAPREILNYF
>NZ_CP015436.1|WP_156487489.1|1429683_1429842_-|hypothetical-protein
MSASFMGQGGEDGIRELFWQYEPCLAKIERTTMTKSYKMVVLQAMLDRGPVH
>NZ_CP015436.1|WP_066329512.1|1430730_1430919_+|hypothetical-protein
MARLGHTAGLPFSRELGPILFHLLHVPLNQPQERLMATLKNIGSPAGNPPSFAAKTRRSFMV
>NZ_CP015436.1|WP_044745824.1|1430936_1431821_-|LysR-family-transcriptional-regulator
MDIRQLRYFLAIVEEGQISRAAKKLNMAQPPLSQQLRLMEEELGVTLLERQRNKKSVELTEAGKVLYEKARHVLHVFEESMREVKETGDGVRGELSLGVALLCASYLPEKLQRFREQYPHVSFRLWGGDPFSIRERLERRDIELAIVSLPIDDSGLSMVRLGTEPFVLVAPTSWEMLNDQTAVSITELADVPLLLVRREKGEGLYEQLMAEWGRFGIRPNVVCECQDVHIVLSLVAFGMGASIMPRTAIPPFIRKELRVLEITDTALCSETALVWLKDRYLSKAAQRLIKMLAE
>NZ_CP015436.1|WP_044745823.1|1431944_1433135_+|MFS-transporter
MQQQPLWTKNFILVAFVNFFTFFIFYYLLVTLPVYAVQELHSSPSSIGLITTIFLIAAIMVRPISGKWMGKSGKYAIFLSAMVIMGTASLLYFFAHSLVGLLALRFFHGLGFGMATTANGAMVADLIPDSRKGEGMGYFGLTVNLAMVIGPFLGLTVMQHGAAAMFSMNALCALVAIAIGLFIRLPKQNAASRSAQAQKTAGKLWERSAIPVSLLAAFFGLAYSGIISFVSIYAKEAGFSRAASYFFIIYAAVLLISRPFTGKWFDRYGAKVIIYPAIVCFALGTYLLSTATTALVFLVSAGLIGLGWGTTFPSLQTIAIQVAPPPNRGLATATFLSIFDFGFGMGSFFVGLVAAKTGYSILYLGSTFLILAGIGLYYWFDQRSGGKSGITVRQTG
>NZ_CP015436.1|WP_044745822.1|1433724_1434387_-|DUF975-family-protein
MSLSALKRQARQSLKGKWGTAVLLMMIYFLVSVLIPTVIEIIISGGWDVWLEQENTPASADVFNILYSLAAIPFSIVVYWLFLEVYRGSDFNIANIFTIYGEGKRSLKLIGTSILFGIFVLLWSLLLIIPGIIKSLAYSQTFFLLKDHPEYGALQAITESRKRMKGYKGKLFLLYLSFIGWGILSIFTLGIGLLWLIPYVYASLAAFYEEFIRTQEESVE
>NZ_CP015436.1|WP_044745820.1|1434762_1436610_-|sodium:proton-antiporter
MGQHSSITSLLIVIVVAFFTPLFLHRFRLQVIPVVVAETVVGIMIGKTGLNIVKDDMWLETLSTLGFLFLMFLSGLEIDFSAFARKTKKKKEDEPNTFILASTVFVGIFLVSLGLSYLFVWAGYVDNAFLMTLIISTISLGVVVPTLKDAQLMKTSIGQTILLIAVIADLVTMVLLAVFVSANESNSGNTWLLLGLFVAGVLFYFAGKHFKRRSFVETMAKGTIQIGTRAVFTLIIVLVALSESLGAENILGAFLAGVLVSLLSPNPDFVHKLDSFGYGFFIPIFFVMVGVNLDLRPLFAEPKILLLIPLLFLALVISKVVPVYLLRIWYDSRTTLASGFLLVSTLSLVIAAATIAERLGMIDENMKGALILVAVLTSVVSPIMFKKLYKKQVEETPKMAVKLIGTNQFTLAAARDLNAQQYETTLYHIKEEKLELLALDHVFPIIDIEDYSFAVLEENGAFAADVVVVLTGNEAINAQVAAWAKEQGVSRVIAFVDSPNTVQELQAKGIETASIALSAAAVLKSFIVSPHIVDMLTDSNAALHEIEMNHSAYHGVLLRQFPFLGDCIIVRIFRGNESLIPHGDTELRMGDRLIVTGSEEYVWELKELFEYGKAL
>NZ_CP015436.1|WP_044745819.1|1437023_1437230_+|metal-ABC-transporter-ATPase
MSEATFFVTEAVSQQPIQQIEQLLNSLEGVERVLIDTADGEIKVEFDDKKISKEQMMITLQQHHFHIQ
>NZ_CP015436.1|WP_044745818.1|1437649_1438123_+|hypothetical-protein
MDKLILWALLFLGIALLLFSFIRKPLLIKNSLLAFLIKAYFSTFFGVIVVETHTLDYPVRFLPEYFDTSILFEYVLFPVVCVYFYQTSLRSSFLGIVGQGLLYTTAMTLIEVLCEKYTDLIEYYTWKWWYSFVTMFLLTMFVRSIMLWVDHNKLSRE
>NZ_CP015436.1|WP_044745817.1|1438674_1439463_-|YhfC-family-intramembrane-metalloprotease
MIVAGSMAGIIVQFIISVFIPIGLVIYGRRKGWLSWKPLGVGILIFILFSQILEKLLHVAVIDPTGPSLKWTDNPFLFVVYATLAAGIFEEMGRYLGFRWLLKRHHDYQDGLSFGIGHGGIEAILIGGIGAVNAWILTNLIQSGAFEQVIAASLSADQAALLKQQVQQTTFAMYMLGGFERLFALSFHIAMSLLVLFGVRRRQFRYVIYAILLHALMDVASALYQVKAVTNIWLVEGVAFIFAIIALIWTRRVKTQFVKEQG

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Crispr_ID: NZ_CP015436_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015436_10

3133932-3134294

Orphan

Consensus_repeat	Method
GTTTTTATCTTAACTATGAGGAATTGAAAC	PILER-CR
GTTTTTATCTTAACTATGAGGAATTGAAAC	CRISPRCasFinder
GTTTTTATCTTAACTATGAGGAATTGAAAC	CRT

5 spacers

The CRISPR arrays of NZ_CP015436_10

>merge|NZ_CP015436|10|3133932-3134294|PILER-CR,CRISPRCasFinder,CRT
GTTTTTATCTTAACTATGAGGAATTGAAACATCTCATCGCCATACTGAATGCCAAGTCCAGTAGCAGTTTTTATCTTAACTATGAGGAATTGAAACCCAACTGTCAGGCGTCGGTTGGTATTCTCGATGACCGTTTTTATCTTAACTATGAGGAATTGAAACGTGTTCGAACTTGCTAATCAAATGAGTACTGATGATTGTTTTTATCTTAACTATGAGGAATTGAAACTCATGGAGATTATCTATGTGGACGGTACCGTTTTTGCCGGTTTTTATCTTAACTATGAGGAATTGAAACTCGATGGGTTGAACTCTATGATCGGCCCACTCCAAGTTTTTATCTTAACTATGAGGAATTGAAAC

>NZ_CP015436|10|9|3133932-3134294|PILER-CR
GTTTTTATCTTAACTATGAGGAATTGAAAC	ATCTCATCGCCATACTGAATGCCAAGTCCAGTAGCA
GTTTTTATCTTAACTATGAGGAATTGAAAC	CCAACTGTCAGGCGTCGGTTGGTATTCTCGATGACC
GTTTTTATCTTAACTATGAGGAATTGAAAC	GTGTTCGAACTTGCTAATCAAATGAGTACTGATGATT
GTTTTTATCTTAACTATGAGGAATTGAAAC	TCATGGAGATTATCTATGTGGACGGTACCGTTTTTGCCG
GTTTTTATCTTAACTATGAGGAATTGAAAC	TCGATGGGTTGAACTCTATGATCGGCCCACTCCAA
GTTTTTATCTTAACTATGAGGAATTGAAAC

>NZ_CP015436|10|10|3133932-3134294|CRISPRCasFinder
GTTTTTATCTTAACTATGAGGAATTGAAAC	ATCTCATCGCCATACTGAATGCCAAGTCCAGTAGCA
GTTTTTATCTTAACTATGAGGAATTGAAAC	CCAACTGTCAGGCGTCGGTTGGTATTCTCGATGACC
GTTTTTATCTTAACTATGAGGAATTGAAAC	GTGTTCGAACTTGCTAATCAAATGAGTACTGATGATT
GTTTTTATCTTAACTATGAGGAATTGAAAC	TCATGGAGATTATCTATGTGGACGGTACCGTTTTTGCCG
GTTTTTATCTTAACTATGAGGAATTGAAAC	TCGATGGGTTGAACTCTATGATCGGCCCACTCCAA
GTTTTTATCTTAACTATGAGGAATTGAAAC

>NZ_CP015436|10|9|3133932-3134294|CRT
GTTTTTATCTTAACTATGAGGAATTGAAAC	ATCTCATCGCCATACTGAATGCCAAGTCCAGTAGCA
GTTTTTATCTTAACTATGAGGAATTGAAAC	CCAACTGTCAGGCGTCGGTTGGTATTCTCGATGACC
GTTTTTATCTTAACTATGAGGAATTGAAAC	GTGTTCGAACTTGCTAATCAAATGAGTACTGATGATT
GTTTTTATCTTAACTATGAGGAATTGAAAC	TCATGGAGATTATCTATGTGGACGGTACCGTTTTTGCCG
GTTTTTATCTTAACTATGAGGAATTGAAAC	TCGATGGGTTGAACTCTATGATCGGCCCACTCCAA
GTTTTTATCTTAACTATGAGGAATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015436.1\|WP_156487533.1\|3136937_3137114_-\|transcriptional-regulator	unknown	unknown	unknown
NZ_CP015436.1\|WP_044743187.1\|3132553_3132970_+\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|377457
NZ_CP015436.1\|WP_156487577.1\|3137329_3138316_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173803
NZ_CP015436.1\|WP_044743194.1\|3128890_3129313_+\|DUF2634-domain-containing-protein	unknown	unknown	gnl\|CDD\|378510
NZ_CP015436.1\|WP_044743188.1\|3132161_3132377_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044744996.1\|3138331_3139222_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_082063765.1\|3142384_3142525_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044743195.1\|3128616_3128886_+\|DUF2577-domain-containing-protein	unknown	unknown	gnl\|CDD\|378501
NZ_CP015436.1\|WP_052661002.1\|3134678_3135275_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369706
NZ_CP015436.1\|WP_044744999.1\|3143875_3144826_+\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP015436.1\|WP_044744997.1\|3139240_3139789_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044743191.1\|3130864_3131287_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044745001.1\|3146038_3148192_+\|transglutaminase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376628
NZ_CP015436.1\|WP_044744998.1\|3140630_3142232_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238697
NZ_CP015436.1\|WP_044743192.1\|3130317_3130863_+\|YmfQ-family-protein	unknown	unknown	gnl\|CDD\|378379
NZ_CP015436.1\|WP_044743190.1\|3131287_3131593_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044743189.1\|3131592_3132162_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044743193.1\|3129305_3130328_+\|baseplate-J/gp47-family-protein	unknown	unknown	gnl\|CDD\|377414
NZ_CP015436.1\|WP_044745000.1\|3144836_3146036_+\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NZ_CP015436.1\|WP_066329600.1\|3132969_3133707_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407

Protein	Function_ID	Function_description	E-value
NZ_CP015436.1\|WP_044743187.1\|3132553_3132970_+\|phage-holin-family-protein	gnl\|CDD\|377457	pfam05105, Phage_holin_4_1, Bacteriophage holin family. Phage holins and lytic enzymes are both necessary for bacterial lysis and virus dissemination. This family also includes TcdE/UtxA involved in toxin secretion in Clostridium difficile. The 1.E.10 family is represented by Bacillus subtilis phi29 holin; 1.E.16 represents the Cph1 holin; and the 1.E.19 family is represented by the Clostridium difficile TcdE holin. Toxigenic strains of C. difficile produce two large toxins (TcdA and TcdB) encoded within a pathogenicity locus. tcdE, encoded between tcdA and tcdB, encodes a 166 aa protein which causes death to E. coli when expressed, and the structure of TcdE resembles holins. TcdE acts on the bacterial membrane. Since TcdA and TcdB lack signal peptides, they may be released via TcdE either prior to or subsequent to cell lysis.	1.36931e-38
NZ_CP015436.1\|WP_044745000.1\|3144836_3146036_+\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	1.21228e-29
NZ_CP015436.1\|WP_044743194.1\|3128890_3129313_+\|DUF2634-domain-containing-protein	gnl\|CDD\|378510	pfam10934, DUF2634, Protein of unknown function (DUF2634). Some members in this family of proteins are annotated as phage related, xkdS however currently there is no known function.	2.11342e-22
NZ_CP015436.1\|WP_044743195.1\|3128616_3128886_+\|DUF2577-domain-containing-protein	gnl\|CDD\|378501	pfam10844, DUF2577, Protein of unknown function (DUF2577). This family of proteins has no known function.	1.38431e-13
NZ_CP015436.1\|WP_052661002.1\|3134678_3135275_+\|hypothetical-protein	gnl\|CDD\|369706	pfam08139, LPAM_1, Prokaryotic membrane lipoprotein lipid attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.	0.00123793
NZ_CP015436.1\|WP_156487577.1\|3137329_3138316_+\|S8-family-serine-peptidase	gnl\|CDD\|173803	cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.32431e-83
NZ_CP015436.1\|WP_044744999.1\|3143875_3144826_+\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	2.97945e-105
NZ_CP015436.1\|WP_044745001.1\|3146038_3148192_+\|transglutaminase-domain-containing-protein	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	1.03241e-27
NZ_CP015436.1\|WP_044744998.1\|3140630_3142232_+\|hypothetical-protein	gnl\|CDD\|238697	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.	4.80646e-33
NZ_CP015436.1\|WP_044743192.1\|3130317_3130863_+\|YmfQ-family-protein	gnl\|CDD\|378379	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313). Members of this family of proteins comprise various hypothetical and putative bacteriophage tail proteins.	1.09608e-41
NZ_CP015436.1\|WP_044743193.1\|3129305_3130328_+\|baseplate-J/gp47-family-protein	gnl\|CDD\|377414	pfam04865, Baseplate_J, Baseplate J-like protein. The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologs, which are thought to have been horizontally transferred.	3.4066e-57
NZ_CP015436.1\|WP_066329600.1\|3132969_3133707_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	2.12161e-66

>NZ_CP015436.1|WP_066329600.1|3132969_3133707_+|N-acetylmuramoyl-L-alanine-amidase
MVKIVLDAGHGGTDSGAVGNGLQEKNLTLNIVKKIGGLLAEYEGVSIIYTRTDDRFVELSERAAIANRADADFFLSVHINAGSGTGFESYIYNGNVSPSTIAYQNTIHSEIMKAIAGVQDRGKKRANYAVLRETKMPALLTENLFIDNANDAAKLKSEPFLLQVAHGHVEGIAKAFGLKRKATQQKQEEPKMPAPEKTAYDKAVDAAFEFLKQHGVVTQDRREEPVTRAQVFLMLHRLAQNMLQK
>NZ_CP015436.1|WP_044743187.1|3132553_3132970_+|phage-holin-family-protein
MKNTDTLWTAIMGGTSITLAYLLGGFDNLVAAFAIFMACDYVTGVMVGFKEKQVNSYRAFRGLAKKVGMITFVIVANQLDIITGNSNGFLRDAMLMFLVATEGISIIENLGKLGLRVPIFLVKALEQLSDKGEKGADQ
>NZ_CP015436.1|WP_044743188.1|3132161_3132377_+|hypothetical-protein
MSIINQYIEGDYIVVEYESGAKVRYLASQNLEETIEIPPNPLLQLQQENAELKERIEIMQQALDDLILGGV
>NZ_CP015436.1|WP_044743189.1|3131592_3132162_+|hypothetical-protein
MGISKLKNESNGSVFNYSLYPKKFTIYSPAQYINSTLTEVVRLEGEGFVEFLIAGFSGYSSGGTNTCGIKVTLDGNVIIDTSYSGTNTGIRYNGFYDRNKVKPYNSDFYIGYGYRLISSTETNETPIFSALQQGVRMVSILPEDPFPINTIDKIKVLDVPLIFKTSVIIEMRKSGYFSYGSALISGGIK
>NZ_CP015436.1|WP_044743190.1|3131287_3131593_+|hypothetical-protein
MAAIAKRLYKGTAETSPTTAYTVPANTMTIVKNIVLTNKSASAATATVVIAGIEVVNNYSIDANDTVVIDLSLVMNATETITVQSGTTSAINVYISGVEVA
>NZ_CP015436.1|WP_044743191.1|3130864_3131287_+|hypothetical-protein
MPEITPNLGLYLKNPVTDGNDTFNIETMLNQNWRKIDEKVALKTEVETSESVQQKIDEAIAGLINGAPEALDTLRELAQAMGDDPNFATTVLNRLTTAEQNFAAHASDTTKHISAAERAAWNAAQAKSDDLEILYWMGGI
>NZ_CP015436.1|WP_044743192.1|3130317_3130863_+|YmfQ-family-protein
MSSKDEIIELLPDLFRNSPEYQAIAHAEGKQFDKLEAAIDDVLNQAFIDLATWGLALWEKDYGIPTNPSKSIEERRSNLKAKKRGIGTVKENVIKNTAEAYYGGEVEVIQKPKDLELIVKFISSYGVPSNLDDVRKALEEIIPCHLELLFEFTYLLIKDIHNVKTIAEMEQIPLNKFAGGA
>NZ_CP015436.1|WP_044743193.1|3129305_3130328_+|baseplate-J/gp47-family-protein
MFEDRTFETILEEMLDDIPDDFDKQERSPIYIALAPAAKKLADAYVQLDRVLNLVFASTSEGEYLERRTSEIGVFKKRAIKAIREGIFNIPVDVGSRFFVDGVYYVVTEAGTNAKLQCEEAGTIGNKPPEGSVLLPLDNIDGLETAILGKIIAPGEEEEEDQYLYARYQEKASKPATGGNIYHYLQWAKEVPGIRAAKVFPRWQGKGTVRVVVVGSDGRAPSQEKVTEVFNRISNEMPIDVDLTVDTAVEVPINITADLILQPGVDIETIEFGYKTAIEKLFSDSALTTNTVRYSQLSSMILEQDGVIDYQNFLINDKTSNLILGDDEIAVVGTVIFNVI
>NZ_CP015436.1|WP_044743194.1|3128890_3129313_+|DUF2634-domain-containing-protein
MALSPELNFEEIAAEDLRPVLKTFRFDFEKNILTSEVIDGIEAAKQIIMFVLRIPRYAYPILSSDFGNENEKLIADNETTVEYKKMELPRLMEEALIHLDFVESVEEFEIEHKDDAFYVNFVVYTTEGPIEIEEVFGEGV
>NZ_CP015436.1|WP_044743195.1|3128616_3128886_+|DUF2577-domain-containing-protein
MMVQMIKKIALEAVQAESPLRFLEAIVVSAPPDFQIKLRDNNKLIIPEDLISIAERLTELGKELKIGDRVMVAAIQGGQSFFIIDRIAE
>NZ_CP015436.1|WP_052661002.1|3134678_3135275_+|hypothetical-protein
MKKILMIPLAAFLLSACNDVDTIKQSEDEKAKAKVEESAKNEDTDKGAKEKKEDIWTYYENATWSDDFKGLKTTIQKVVVSDKAPGLDEEGNEITTSAVGVKFQIENTTEGKFTTYPDQAVLVTSTGEQIETPDMFVSDHLGGEIDKGVIKEGDVIWYLKRGNAEKIQWIKLKWSAHVGREDEFDGEMKEYEVELKLK
>NZ_CP015436.1|WP_156487533.1|3136937_3137114_-|transcriptional-regulator
MNIKTETGYICKLKVILAESGIKHGWFAEKIGVRYAICEELGLPINEIWIKKEPTQSD
>NZ_CP015436.1|WP_156487577.1|3137329_3138316_+|S8-family-serine-peptidase
MSFYISKDFLGVNNPKTYVSSSTNSGEEKSSNLKLVNNSERKVNDLQLLISKKKQVVPWGVNSLGIDKLQAKKVSIPKIKVAILDSGINKEHEDLKGKVVKEFNAINPRQPVSDNYGHGTAVAGIIAANDNEVGIRGVSPNVEIYSVKVLDDKGHGNVRNLVRGIQWCIDNKVQIINISFGMSSDHPQLRKAIEAATSSGIIVIAAAGNNYGGKADYPASYKDVISVTAVNSNYKVAGFSARGKIDFSAPGVDILTTSKNGGYAMYSGTSLAAAYVTGIISIILEKHEQFGISMRDKKLSSKMISILKKYSIDIGNKTYYGNGFIKLS
>NZ_CP015436.1|WP_044744996.1|3138331_3139222_+|hypothetical-protein
MFKFKQAISILLTLVLLVGIVPTNSSTLAEEITDDQTQTDAINEENIKIVENNEKTLEIQTEVSIDNTTNATTDDTTNATTDDTTNATTDETTNATVSLSLDKGTNEFTVTSIETDSQGNQVEKEYKVDVENATEDGIVATFTDMGTGEKYELNTNELHASFAFLIPIGVIIGEALLEHLIAIGLAAVIAGVTYTVASSVSETLRKKQYDHYPAYIDKKKDRVMIGNKPLTLDEAASRLKGAPPYNDVWSTDSVKAFKVAAKAGNGKPPIHDSAHGGEGYLPHWHIYNRSGGHSFY
>NZ_CP015436.1|WP_044744997.1|3139240_3139789_+|hypothetical-protein
MKNNLLKKYQQLNMPHKFLVTEVDNILKKKYKAVEVPVNEFIEFKKDPFVDYSTFVKSYFIQNEEILNSLYSEKEKADIDRMRECIQEMRAAGELLIPQPSDEDYDLQVRYTNFAEGRLIAVILESIDRQYVSGFQMQGAMCEKLYHELKVFKGIDPADCVEGNPILDEYLEALVKAGYLQE
>NZ_CP015436.1|WP_044744998.1|3140630_3142232_+|hypothetical-protein
MAALDKLIKNNEFPIVFIGSGLSIRYLKNFPNWRGLLEYLWNLTGEQSDFYAFLNRTRNDIEKEKPNLKQSELDYLTNIRVGTMLEQKINKLFYDEKIKIDNFTQKEAFEKNITPFKKVLSNRFLNYEFKDEMLDEFEYFKKMLIKTQIILTTNYDTLIEDAYNSISDYGIKTYIGQKGFFEQTMGYAELYKLHGCVTDPKSLIICENDYRRFEKNSVLISAKIISQLLHSPIVFLGYSLTDQNIRNIIRDFSSSLSEKELLKLESKIIVIEREEGLNEIREETVNDRDLNCRFTYIRTDNFGEIYKKMAEINQGVAPSEVRKYQHIIKNLIIERGKEGTLKSLLVAPSQLDELEKNIGNKKLVVALGDSTYIFAIPDVITYVYDYIFEKDELNTDIVLRFLANQPSKSRLPFLRHVNIETISNSNLHPGEKEKLRQRLENHGDFLKEKQRITNRWYQIKFDDLESILKEDYPLERQYGIIAYNIDNLNLNDVELYVKKAVEKLKENGEIRISTELRRLILLYDLKKNKRDNA
>NZ_CP015436.1|WP_082063765.1|3142384_3142525_-|hypothetical-protein
MEVSEQTFHKWCKNVTQPNLEEAYVLSRIIGASLEELCEFEEDKEK
>NZ_CP015436.1|WP_044744999.1|3143875_3144826_+|MoxR-family-ATPase
MPKNEELHPVIGTMVENIEKVIVGKREVATLSIVALLARGHVLLEDVPGVGKTMLVRALAKSVSAQFKRIQFTPDLLPSDVTGVSIYNPKEGQFEYKPGPVMGNIILADEINRTSPRTQSALLEAMEEGSLTVDGVTRPLPRPFFVMATQNPIEYEGTYPLPEAQLDRFLLKLNMGYPSIQEEMDILNKTEKVVPIDQLQPVITIKDLLLLQEKVQEVYVDERVKRYIVEIVQRSRSHESIYLGVSPRGSVALMKAVQAYAFVHGRDFALPDDVQSLAPYVLAHRIILKAHAKFDGISAGHIISEIISRTPVPVQR
>NZ_CP015436.1|WP_044745000.1|3144836_3146036_+|DUF58-domain-containing-protein
MKKHRKNLWQFIRVLGLLAILFSYAMFQGGFVSWFLFYSFLPFGLYAFVLIFYPLHSIKVKRTFNQKVYYYAGEKLRVTVQIDLPRFFPLIYILAEEKLPPSLAKMTPFRTVLMPLGRRMCTYVYEMDELPRGEHIFSSIHFKITDLLGVVAKEAIVSTEDSILVYPRYVEMNARKMGQQLDDGSVVSPLPLHRDTAMAIGAREYTQGDRFSWIHWKASARKNELMTKDFEERQSEDLMVFLDRTPTALFEEVVTFTASFVRMTVKAGVKTGLVSVGRDRIVIQAQNGETHLQRLFYHLAKVACDSQESFARIMYRETMQWPLSFSFCCITSQLYKEIASIMADLASKNRRGTVVLIKKAEGQLSKEEREWIEMLRKKGVTVKVTMPQHFANAFVEGGK
>NZ_CP015436.1|WP_044745001.1|3146038_3148192_+|transglutaminase-domain-containing-protein
MEQSRIKTFAYYLFAFWLLWEWLAPLTVVSDTKNIQVFIVFVAFYFLLELLRVPLWLSVCLKIGYLFYALNDLFFHAPFLSFQWLFMFGEEAVYHLSLIRHFQWEDMTDRFRTFLFFLMLWMMCYLVQYWLVKQKRIWLFLVMTFIYVAVLDTFTPFSGTGAIVRLVGAGFFLLSWLHYERLPAAKQPAKWLVMGVVAVGAALLCGYAGPKLAPQWPDPVAFIKSYAAEDREQDPNQFAVKKIGYGNNDSRLGGPFIADNTVVFTAEDEETHYWRVETKDIYTGKGWDISDSVQVKTFEQENNVHQWFENSVEKKQLAAHVRMVQPASYLVYPEGLKTIHVSKDIVFRMEAANEKIYPTDRESYLVPLQEYELTYEYPTFSIEKLKASPPVTDEQILKRYTQLPDHLPKRVQELAQQITKQAATTYEKVKAIEQYFHLNGFAYETKDVAVPSRNQDYVDQFLFETKKGYCDNFSTAMIVLLRSIDIPARWVKGYTSGQWVDETDDGKDLYRVTNNNAHSWVEVYFSGIGWVPFEPTQGFNNPYEFTEAESAVESTPVPEQQQTQTAPNRTRLEEQLQQDRLSSSPQQNQERLLSIVNWKSVLSLTVSLMVLTILLYGTRRKWWPYITLLQFKYRHGGDTFVKAYNALLRHLKSCGLKRKEGQTLRQYAAYIDNWFGTNEMSQLTQLYERVIYKNEIVDQQWEEVKELWENLIKRIAS

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Crispr_ID: NZ_CP015436_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015436_11

3263867-3266095

Orphan

Consensus_repeat	Method
GTTTTTATCTTACCTATGAGGGATTGAAAC	PILER-CR
GTTTTTATCTTACCTATGAGGGATTGAAAC	CRISPRCasFinder
GTTTTTATCTTACCTATGAGGGATTGAAAC	CRT

33 spacers

The CRISPR arrays of NZ_CP015436_11

>merge|NZ_CP015436|11|3263867-3266095|PILER-CR,CRISPRCasFinder,CRT
GTTTTTATCTTACCTATGAGGGATTGAAACGCTTTTTGAGCAAAGCAACCCAATACGACCAAAGAGTTTTTATCTTACCTATGAGGGATTGAAACCATATCAACGTAAATCTAAGTGAATTTTTGTGACAGTTTTTATCTTACCTATGAGGGATTGAAACTGGGCTCGAAACAAAACTCCAACGAGCGAAAGCCAAGTTTTTATCTTACCTATGAGGGATTGAAACTTGTTTCAAAACTATGAAAAGGGGGTGAAACAGATATGTTTTTATCTTACCTATGAGGGATTGAAACAGCGGTGTTCGAGCGGCGGTAGTCATCGAAAACACTCAGTTTTTATCTTACCTATGAGGGATTGAAACTAAGCAGGAATCAATAGTTAGGCCGTGTGAAAGATTTAGTTTTTATCTTACCTATGAGGGATTGAAACAAGAACCCAATGAGATGATTATAAGCATCTTGTATGTTTTTATCTTACCTATGAGGGATTGAAACGAGAGCCTTTGCAATGCCTGTCACAATGAGGAGCATCCGTTTTTATCTTACCTATGAGGGATTGAAACCACCTTGATCATCTTGACCAAAAAAGCGGTTTTTCACGTTTTTATCTTACCTATGAGGGATTGAAACTTTCTTGAAAAAAATTCAAATAACAACTCATCAAGGGTTTTTATCTTACCTATGAGGGATTGAAACAGAGAATCTGACGGGGCCTCACAAAAAGCGGCCAGTGCGTTTTTATCTTACCTATGAGGGATTGAAACTTGGCTCAACAAGCTGCGGAACAAATCAGTCTGTTGAGTTTTTATCTTACCTATGAGGGATTGAAACTTGTAGCGTGTTTAGCGACGGATTTCCACGACTTCGTTTTTATCTTACCTATGAGGGATTGAAACTCAATCGTGAAAAACGAACGGTTGTAGCGTTAATCCGTTTTTATCTTACCTATGAGGGATTGAAACTGTGTTTCATATGTGGGGATTCAACCAGACATTTTTATGTTTTTATCTTACCTATGAGGGATTGAAACTCCGACGGTAATCGCTATATACGAAAAAGTGATAAAAGTTTTTATCTTACCTATGAGGGATTGAAACAAATTCGTTTCATGCCATCACTTCGCTTATTTCACAGTTTTTATCTTACCTATGAGGGATTGAAACTTGAGAACACAAAATCTATCCCAGACGAAGCAGGACGGTTTTTATCTTACCTATGAGGGATTGAAACTCAATCTATGGCCGTGGTTGCGAAAGCGTTAGGAAGTTTTTATCTTACCTATGAGGGATTGAAACCGCGTTACATACGCCCCATACACGCGCTGCGAATCTAAGTTTTTATCTTACCTATGAGGGATTGAAACTGAAATCGTCTCGAAGCGTTGTTGGGTTAATCTTCGTTTTTATCTTACCTATGAGGGATTGAAACTGTCTAAGAAAGGAGCGCAAATATGACGGTAGAAATGTTTTTATCTTACCTATGAGGGATTGAAACAGCGCAACCCCACCCGAATCACGCGGTGAACGAATCGGTTTTTATCTTACCTATGAGGGATTGAAACAAAAAATTCATAAAATAAATGTTTACATATACAAAGTTTTTATCTTACCTATGAGGGATTGAAACCGTGGTACTTGAATATAGCTTGTGCGAATCACTCGGTTTTTATCTTACCTATGAGGGATTGAAACTAATCATCAAACGTAAAAGGCATTTCAATTTGTGTCAACGTTTTTATCTTACCTATGAGGGATTGAAACCTGTTGTGTCGGCACCGGCGCAATCAATTTCACGCTTGTTTTTATCTTACCTATGAGGGATTGAAACCCTGTTGTGCGAAATTCGCCGGTTTCGAACACAAAACAGTTTTTATCTTACCTATGAGGGATTGAAACAGATTCTCCCCAAAACTCCCAGGTCACAGCATGACCGTTTTTATCTTACCTATGAGGGATTGAAACATCAACGAGCCTGAAACGTCACTTGCGAAAATCCGTATCGTTTTTATCTTACCTATGAGGGATTGAAACTTTTGTCAATGTATTTTTATATATTTCATTTAAAATCGTTTTTATCTTACCTATGAGGGATTGAAACACTCATTGATGCATACGACAAGATTATTAGTGACTCGGGTTTTTATCTTACCTATGAGGGATTGAAACAAATCTAGATCATACAGGAAAACCGCCTTTGCCGCGTTTTTATCTTAACTACAAGGAATAAAAAC

>NZ_CP015436|11|10|3263867-3266030|PILER-CR
GTTTTTATCTTACCTATGAGGGATTGAAAC	GCTTTTTGAGCAAAGCAACCCAATACGACCAAAGA
GTTTTTATCTTACCTATGAGGGATTGAAAC	CATATCAACGTAAATCTAAGTGAATTTTTGTGACA
GTTTTTATCTTACCTATGAGGGATTGAAAC	TGGGCTCGAAACAAAACTCCAACGAGCGAAAGCCAA
GTTTTTATCTTACCTATGAGGGATTGAAAC	TTGTTTCAAAACTATGAAAAGGGGGTGAAACAGATAT
GTTTTTATCTTACCTATGAGGGATTGAAAC	AGCGGTGTTCGAGCGGCGGTAGTCATCGAAAACACTCA
GTTTTTATCTTACCTATGAGGGATTGAAAC	TAAGCAGGAATCAATAGTTAGGCCGTGTGAAAGATTTA
GTTTTTATCTTACCTATGAGGGATTGAAAC	AAGAACCCAATGAGATGATTATAAGCATCTTGTAT
GTTTTTATCTTACCTATGAGGGATTGAAAC	GAGAGCCTTTGCAATGCCTGTCACAATGAGGAGCATCC
GTTTTTATCTTACCTATGAGGGATTGAAAC	CACCTTGATCATCTTGACCAAAAAAGCGGTTTTTCAC
GTTTTTATCTTACCTATGAGGGATTGAAAC	TTTCTTGAAAAAAATTCAAATAACAACTCATCAAGG
GTTTTTATCTTACCTATGAGGGATTGAAAC	AGAGAATCTGACGGGGCCTCACAAAAAGCGGCCAGTGC
GTTTTTATCTTACCTATGAGGGATTGAAAC	TTGGCTCAACAAGCTGCGGAACAAATCAGTCTGTTGA
GTTTTTATCTTACCTATGAGGGATTGAAAC	TTGTAGCGTGTTTAGCGACGGATTTCCACGACTTC
GTTTTTATCTTACCTATGAGGGATTGAAAC	TCAATCGTGAAAAACGAACGGTTGTAGCGTTAATCC
GTTTTTATCTTACCTATGAGGGATTGAAAC	TGTGTTTCATATGTGGGGATTCAACCAGACATTTTTAT
GTTTTTATCTTACCTATGAGGGATTGAAAC	TCCGACGGTAATCGCTATATACGAAAAAGTGATAAAA
GTTTTTATCTTACCTATGAGGGATTGAAAC	AAATTCGTTTCATGCCATCACTTCGCTTATTTCACA
GTTTTTATCTTACCTATGAGGGATTGAAAC	TTGAGAACACAAAATCTATCCCAGACGAAGCAGGACG
GTTTTTATCTTACCTATGAGGGATTGAAAC	TCAATCTATGGCCGTGGTTGCGAAAGCGTTAGGAA
GTTTTTATCTTACCTATGAGGGATTGAAAC	CGCGTTACATACGCCCCATACACGCGCTGCGAATCTAA
GTTTTTATCTTACCTATGAGGGATTGAAAC	TGAAATCGTCTCGAAGCGTTGTTGGGTTAATCTTC
GTTTTTATCTTACCTATGAGGGATTGAAAC	TGTCTAAGAAAGGAGCGCAAATATGACGGTAGAAAT
GTTTTTATCTTACCTATGAGGGATTGAAAC	AGCGCAACCCCACCCGAATCACGCGGTGAACGAATCG
GTTTTTATCTTACCTATGAGGGATTGAAAC	AAAAAATTCATAAAATAAATGTTTACATATACAAA
GTTTTTATCTTACCTATGAGGGATTGAAAC	CGTGGTACTTGAATATAGCTTGTGCGAATCACTCG
GTTTTTATCTTACCTATGAGGGATTGAAAC	TAATCATCAAACGTAAAAGGCATTTCAATTTGTGTCAAC
GTTTTTATCTTACCTATGAGGGATTGAAAC	CTGTTGTGTCGGCACCGGCGCAATCAATTTCACGCTT
GTTTTTATCTTACCTATGAGGGATTGAAAC	CCTGTTGTGCGAAATTCGCCGGTTTCGAACACAAAACA
GTTTTTATCTTACCTATGAGGGATTGAAAC	AGATTCTCCCCAAAACTCCCAGGTCACAGCATGACC
GTTTTTATCTTACCTATGAGGGATTGAAAC	ATCAACGAGCCTGAAACGTCACTTGCGAAAATCCGTATC
GTTTTTATCTTACCTATGAGGGATTGAAAC	TTTTGTCAATGTATTTTTATATATTTCATTTAAAATC
GTTTTTATCTTACCTATGAGGGATTGAAAC	ACTCATTGATGCATACGACAAGATTATTAGTGACTCGG
GTTTTTATCTTACCTATGAGGGATTGAAAC

>NZ_CP015436|11|11|3263867-3266095|CRISPRCasFinder
GTTTTTATCTTACCTATGAGGGATTGAAAC	GCTTTTTGAGCAAAGCAACCCAATACGACCAAAGA
GTTTTTATCTTACCTATGAGGGATTGAAAC	CATATCAACGTAAATCTAAGTGAATTTTTGTGACA
GTTTTTATCTTACCTATGAGGGATTGAAAC	TGGGCTCGAAACAAAACTCCAACGAGCGAAAGCCAA
GTTTTTATCTTACCTATGAGGGATTGAAAC	TTGTTTCAAAACTATGAAAAGGGGGTGAAACAGATAT
GTTTTTATCTTACCTATGAGGGATTGAAAC	AGCGGTGTTCGAGCGGCGGTAGTCATCGAAAACACTCA
GTTTTTATCTTACCTATGAGGGATTGAAAC	TAAGCAGGAATCAATAGTTAGGCCGTGTGAAAGATTTA
GTTTTTATCTTACCTATGAGGGATTGAAAC	AAGAACCCAATGAGATGATTATAAGCATCTTGTAT
GTTTTTATCTTACCTATGAGGGATTGAAAC	GAGAGCCTTTGCAATGCCTGTCACAATGAGGAGCATCC
GTTTTTATCTTACCTATGAGGGATTGAAAC	CACCTTGATCATCTTGACCAAAAAAGCGGTTTTTCAC
GTTTTTATCTTACCTATGAGGGATTGAAAC	TTTCTTGAAAAAAATTCAAATAACAACTCATCAAGG
GTTTTTATCTTACCTATGAGGGATTGAAAC	AGAGAATCTGACGGGGCCTCACAAAAAGCGGCCAGTGC
GTTTTTATCTTACCTATGAGGGATTGAAAC	TTGGCTCAACAAGCTGCGGAACAAATCAGTCTGTTGA
GTTTTTATCTTACCTATGAGGGATTGAAAC	TTGTAGCGTGTTTAGCGACGGATTTCCACGACTTC
GTTTTTATCTTACCTATGAGGGATTGAAAC	TCAATCGTGAAAAACGAACGGTTGTAGCGTTAATCC
GTTTTTATCTTACCTATGAGGGATTGAAAC	TGTGTTTCATATGTGGGGATTCAACCAGACATTTTTAT
GTTTTTATCTTACCTATGAGGGATTGAAAC	TCCGACGGTAATCGCTATATACGAAAAAGTGATAAAA
GTTTTTATCTTACCTATGAGGGATTGAAAC	AAATTCGTTTCATGCCATCACTTCGCTTATTTCACA
GTTTTTATCTTACCTATGAGGGATTGAAAC	TTGAGAACACAAAATCTATCCCAGACGAAGCAGGACG
GTTTTTATCTTACCTATGAGGGATTGAAAC	TCAATCTATGGCCGTGGTTGCGAAAGCGTTAGGAA
GTTTTTATCTTACCTATGAGGGATTGAAAC	CGCGTTACATACGCCCCATACACGCGCTGCGAATCTAA
GTTTTTATCTTACCTATGAGGGATTGAAAC	TGAAATCGTCTCGAAGCGTTGTTGGGTTAATCTTC
GTTTTTATCTTACCTATGAGGGATTGAAAC	TGTCTAAGAAAGGAGCGCAAATATGACGGTAGAAAT
GTTTTTATCTTACCTATGAGGGATTGAAAC	AGCGCAACCCCACCCGAATCACGCGGTGAACGAATCG
GTTTTTATCTTACCTATGAGGGATTGAAAC	AAAAAATTCATAAAATAAATGTTTACATATACAAA
GTTTTTATCTTACCTATGAGGGATTGAAAC	CGTGGTACTTGAATATAGCTTGTGCGAATCACTCG
GTTTTTATCTTACCTATGAGGGATTGAAAC	TAATCATCAAACGTAAAAGGCATTTCAATTTGTGTCAAC
GTTTTTATCTTACCTATGAGGGATTGAAAC	CTGTTGTGTCGGCACCGGCGCAATCAATTTCACGCTT
GTTTTTATCTTACCTATGAGGGATTGAAAC	CCTGTTGTGCGAAATTCGCCGGTTTCGAACACAAAACA
GTTTTTATCTTACCTATGAGGGATTGAAAC	AGATTCTCCCCAAAACTCCCAGGTCACAGCATGACC
GTTTTTATCTTACCTATGAGGGATTGAAAC	ATCAACGAGCCTGAAACGTCACTTGCGAAAATCCGTATC
GTTTTTATCTTACCTATGAGGGATTGAAAC	TTTTGTCAATGTATTTTTATATATTTCATTTAAAATC
GTTTTTATCTTACCTATGAGGGATTGAAAC	ACTCATTGATGCATACGACAAGATTATTAGTGACTCGG
GTTTTTATCTTACCTATGAGGGATTGAAAC	AAATCTAGATCATACAGGAAAACCGCCTTTGCCGC
GTTTTTATCTTAACTACAAGGAATAAAAAC

>NZ_CP015436|11|10|3263867-3266095|CRT
GTTTTTATCTTACCTATGAGGGATTGAAAC	GCTTTTTGAGCAAAGCAACCCAATACGACCAAAGA
GTTTTTATCTTACCTATGAGGGATTGAAAC	CATATCAACGTAAATCTAAGTGAATTTTTGTGACA
GTTTTTATCTTACCTATGAGGGATTGAAAC	TGGGCTCGAAACAAAACTCCAACGAGCGAAAGCCAA
GTTTTTATCTTACCTATGAGGGATTGAAAC	TTGTTTCAAAACTATGAAAAGGGGGTGAAACAGATAT
GTTTTTATCTTACCTATGAGGGATTGAAAC	AGCGGTGTTCGAGCGGCGGTAGTCATCGAAAACACTCA
GTTTTTATCTTACCTATGAGGGATTGAAAC	TAAGCAGGAATCAATAGTTAGGCCGTGTGAAAGATTTA
GTTTTTATCTTACCTATGAGGGATTGAAAC	AAGAACCCAATGAGATGATTATAAGCATCTTGTAT
GTTTTTATCTTACCTATGAGGGATTGAAAC	GAGAGCCTTTGCAATGCCTGTCACAATGAGGAGCATCC
GTTTTTATCTTACCTATGAGGGATTGAAAC	CACCTTGATCATCTTGACCAAAAAAGCGGTTTTTCAC
GTTTTTATCTTACCTATGAGGGATTGAAAC	TTTCTTGAAAAAAATTCAAATAACAACTCATCAAGG
GTTTTTATCTTACCTATGAGGGATTGAAAC	AGAGAATCTGACGGGGCCTCACAAAAAGCGGCCAGTGC
GTTTTTATCTTACCTATGAGGGATTGAAAC	TTGGCTCAACAAGCTGCGGAACAAATCAGTCTGTTGA
GTTTTTATCTTACCTATGAGGGATTGAAAC	TTGTAGCGTGTTTAGCGACGGATTTCCACGACTTC
GTTTTTATCTTACCTATGAGGGATTGAAAC	TCAATCGTGAAAAACGAACGGTTGTAGCGTTAATCC
GTTTTTATCTTACCTATGAGGGATTGAAAC	TGTGTTTCATATGTGGGGATTCAACCAGACATTTTTAT
GTTTTTATCTTACCTATGAGGGATTGAAAC	TCCGACGGTAATCGCTATATACGAAAAAGTGATAAAA
GTTTTTATCTTACCTATGAGGGATTGAAAC	AAATTCGTTTCATGCCATCACTTCGCTTATTTCACA
GTTTTTATCTTACCTATGAGGGATTGAAAC	TTGAGAACACAAAATCTATCCCAGACGAAGCAGGACG
GTTTTTATCTTACCTATGAGGGATTGAAAC	TCAATCTATGGCCGTGGTTGCGAAAGCGTTAGGAA
GTTTTTATCTTACCTATGAGGGATTGAAAC	CGCGTTACATACGCCCCATACACGCGCTGCGAATCTAA
GTTTTTATCTTACCTATGAGGGATTGAAAC	TGAAATCGTCTCGAAGCGTTGTTGGGTTAATCTTC
GTTTTTATCTTACCTATGAGGGATTGAAAC	TGTCTAAGAAAGGAGCGCAAATATGACGGTAGAAAT
GTTTTTATCTTACCTATGAGGGATTGAAAC	AGCGCAACCCCACCCGAATCACGCGGTGAACGAATCG
GTTTTTATCTTACCTATGAGGGATTGAAAC	AAAAAATTCATAAAATAAATGTTTACATATACAAA
GTTTTTATCTTACCTATGAGGGATTGAAAC	CGTGGTACTTGAATATAGCTTGTGCGAATCACTCG
GTTTTTATCTTACCTATGAGGGATTGAAAC	TAATCATCAAACGTAAAAGGCATTTCAATTTGTGTCAAC
GTTTTTATCTTACCTATGAGGGATTGAAAC	CTGTTGTGTCGGCACCGGCGCAATCAATTTCACGCTT
GTTTTTATCTTACCTATGAGGGATTGAAAC	CCTGTTGTGCGAAATTCGCCGGTTTCGAACACAAAACA
GTTTTTATCTTACCTATGAGGGATTGAAAC	AGATTCTCCCCAAAACTCCCAGGTCACAGCATGACC
GTTTTTATCTTACCTATGAGGGATTGAAAC	ATCAACGAGCCTGAAACGTCACTTGCGAAAATCCGTATC
GTTTTTATCTTACCTATGAGGGATTGAAAC	TTTTGTCAATGTATTTTTATATATTTCATTTAAAATC
GTTTTTATCTTACCTATGAGGGATTGAAAC	ACTCATTGATGCATACGACAAGATTATTAGTGACTCGG
GTTTTTATCTTACCTATGAGGGATTGAAAC	AAATCTAGATCATACAGGAAAACCGCCTTTGCCGC
GTTTTTATCTTAACTACAAGGAATAAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015436.1\|WP_082063832.1\|3256464_3257655_+\|response-regulator	unknown	unknown	gnl\|CDD\|226456
NZ_CP015436.1\|WP_044746212.1\|3250155_3250428_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044744713.1\|3269613_3270411_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044743899.1\|3280414_3281023_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|188353
NZ_CP015436.1\|WP_044746206.1\|3262916_3263204_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044744710.1\|3273457_3273919_-\|DUF2269-domain-containing-protein	unknown	unknown	gnl\|CDD\|370783
NZ_CP015436.1\|WP_044743900.1\|3278444_3280418_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273736
NZ_CP015436.1\|WP_066329555.1\|3248405_3249932_+\|IS1182-family-transposase	unknown	unknown	gnl\|CDD\|226192
NZ_CP015436.1\|WP_044744709.1\|3273928_3274525_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP015436.1\|WP_044746208.1\|3261021_3261603_+\|class-D-sortase	unknown	unknown	gnl\|CDD\|320677
NZ_CP015436.1\|WP_044741390.1\|3246897_3248277_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|129571
NZ_CP015436.1\|WP_044746207.1\|3262254_3262788_+\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|223340
NZ_CP015436.1\|WP_044744711.1\|3271458_3273192_+\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|320688
NZ_CP015436.1\|WP_044746209.1\|3257791_3260845_-\|response-regulator	unknown	unknown	gnl\|CDD\|225519
NZ_CP015436.1\|WP_044746211.1\|3251158_3256369_+\|collagen-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|227268
NZ_CP015436.1\|WP_044744715.1\|3268074_3268839_+\|ABC-transporter-permease	unknown	unknown	unknown
NZ_CP015436.1\|WP_044743901.1\|3277479_3277818_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044741389.1\|3245886_3246813_+\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|183982
NZ_CP015436.1\|WP_044744712.1\|3270422_3271103_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213235
NZ_CP015436.1\|WP_052660998.1\|3266563_3267427_+\|DUF4097-domain-containing-protein	unknown	unknown	gnl\|CDD\|372574

Protein	Function_ID	Function_description	E-value
NZ_CP015436.1\|WP_082063832.1\|3256464_3257655_+\|response-regulator	gnl\|CDD\|226456	COG3947, COG3947, Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms].	8.59433e-93
NZ_CP015436.1\|WP_044743899.1\|3280414_3281023_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|188353	TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	1.67707e-81
NZ_CP015436.1\|WP_052660998.1\|3266563_3267427_+\|DUF4097-domain-containing-protein	gnl\|CDD\|372574	pfam13349, DUF4097, Putative adhesin. This has a putative all-beta structure with a twenty-residue repeat with a highly conserved repeating GD, gly-asp, motif. It may form part of a bacterial adhesin.	8.89831e-37
NZ_CP015436.1\|WP_044744710.1\|3273457_3273919_-\|DUF2269-domain-containing-protein	gnl\|CDD\|370783	pfam10027, DUF2269, Predicted integral membrane protein (DUF2269). Members of this family of bacterial hypothetical integral membrane proteins have no known function.	3.19466e-24
NZ_CP015436.1\|WP_044743900.1\|3278444_3280418_+\|hypothetical-protein	gnl\|CDD\|273736	TIGR01654, unnamed_protein_product, bacteriocin-associated integral membrane (putative immunity) protein. This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear. [Cellular processes, Toxin production and resistance].	7.60316e-12
NZ_CP015436.1\|WP_066329555.1\|3248405_3249932_+\|IS1182-family-transposase	gnl\|CDD\|226192	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.64611e-32
NZ_CP015436.1\|WP_044744709.1\|3273928_3274525_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.22553e-14
NZ_CP015436.1\|WP_044744711.1\|3271458_3273192_+\|M48-family-metalloprotease	gnl\|CDD\|320688	cd07329, M56_like, Peptidase M56-like, integral membrane metallopeptidase in bacteria. This family contains peptidase M56, which includes zinc metalloprotease domain in MecR1 as well as BlaR1. MecR1 is a transmembrane beta-lactam sensor/signal transducer protein that regulates the expression of an altered penicillin-binding protein PBP2a, which resists inactivation by beta-lactam antibiotics, in methicillin-resistant Staphylococcus aureus (MRSA). BlaR1 regulates the inducible expression of a class A beta-lactamase that hydrolytically destroys certain beta-lactam antibiotics in MRSA. Both, MecR1 and BlaR1, are transmembrane proteins that consist of four transmembrane helices, a cytoplasmic zinc protease domain, and the soluble C-terminal extracellular sensor domain, and are highly similar in sequence and function. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription. All members contain the zinc metalloprotease motif (HEXXH). Homologs of this peptidase domain are also found in a number of other bacterial genome sequences, most of which are as yet uncharacterized.	1.08929e-29
NZ_CP015436.1\|WP_044741390.1\|3246897_3248277_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|129571	TIGR00479, 23S_rRNA_uracil1939-C5-methyltransferase_RlmD, 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. [Protein synthesis, tRNA and rRNA base modification].	0
NZ_CP015436.1\|WP_044746207.1\|3262254_3262788_+\|dihydrofolate-reductase	gnl\|CDD\|223340	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].	4.8351e-33
NZ_CP015436.1\|WP_044746209.1\|3257791_3260845_-\|response-regulator	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	3.79694e-50
NZ_CP015436.1\|WP_044746208.1\|3261021_3261603_+\|class-D-sortase	gnl\|CDD\|320677	cd05828, Sortase_D_1, Sortase domain found in subfamily 1 of the class D family of sortases. Class D sortases are cysteine transpeptidases distributed in Gram-positive bacteria (mainly present in Firmicutes). The prototypical subfamily 1 of class D sortase from Bacillus anthracis (named Ba-SrtC) covalently attaches proteins bearing a noncanonical LPNTA sorting signal, such as the BasH and BasI proteins, to the peptidoglycan of the cell wall that facilitate sporulation. BasH is exclusively anchored to the forespore cell wall envelope, while BasI is attached to the diaminopimelic acid moiety of the peptidoglycan of predivisional cells. Ba-SrtC lacks the N-terminal signal peptide and membrane anchor. The family also includes many class D sortase homologs from Gram-negative bacteria, but the functions of these enzymes are unknown.	3.03654e-56
NZ_CP015436.1\|WP_044746211.1\|3251158_3256369_+\|collagen-binding-domain-containing-protein	gnl\|CDD\|227268	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP015436.1\|WP_044744712.1\|3270422_3271103_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213235	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter. The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.	1.06893e-68
NZ_CP015436.1\|WP_044741389.1\|3245886_3246813_+\|diacylglycerol-kinase	gnl\|CDD\|183982	PRK13337, PRK13337, putative lipid kinase; Reviewed.	0

>NZ_CP015436.1|WP_044746206.1|3262916_3263204_-|hypothetical-protein
MVEALLNQILEKLVELQSEIDQMKTKLATKEDLAAVATKGDLISIQQAILETNRIVKNIELNQERHERILDVLSKRSIEHEARYQRLTASAVKEN
>NZ_CP015436.1|WP_044746207.1|3262254_3262788_+|dihydrofolate-reductase
MEKKRKLVLFISTSLDGYIATKDESLDWLFQVEGEGDNGYSEFYETVDTILFGKRTYDWVLKQGIEKLPYENKACYVFTRSPLEDQEDVKFVNEDAVHFTNKLKNQEGRNIWLVGGGELLHSFIKNQLVDEFIMKVAPILLGTGIPLFREGDYQLNLSLKGVRNFNQFVELHYEVKK
>NZ_CP015436.1|WP_044746208.1|3261021_3261603_+|class-D-sortase
MRKRLAAIFIVIGLSIIFVSMQQILETKEATQQALQTAEQIVDEKKGEGGKDFRVSREQFSPKGHDVIGILYIPKIDGTLPIVEGTEEEMLRKGVGHHVSTAFPGDHEQILLSGHRDTVFRKFGDLEVGDRFVVKMPYGTFEYEMKKAEIVEAHDTSVIGPKGEEVLTLSTCYPFHYVGPAPERYVIYAYPVD
>NZ_CP015436.1|WP_044746209.1|3257791_3260845_-|response-regulator
MSKRKIAFILSVFLLIIIMIRFLWMSAFTIPDHPTAERGVLDLRGWEPLKEHSLPLDGEWEFFPNQWLITKQGKSVVSSKEVQWIRVPGNWRTSTENGQVFGYGSYRLRILLDPHQEAIYGIHIPSISSSAEVYVNGKLLSQAGIPASEKESYQPRTTPQTVYFPVNHATKIELIIQVANYDHPFRAGILQSVHLGLLEPLSQEIQFNTTVAIITCVIYLFHALYSLIVFLIGNRNKTFLYFSLMILCIVNGTLIGNGLLFQWVPLSFEWSIKITLLTMVAGGYTLLKCIQHFLPDKLQTKVPPLYYLLCTITVLMIFSFPISIHLTWQWYYIFMMLIPCLLAPLALYRATTRINDDNIFLFLAIIAAVGSLIWFVVIFIFSIEMKSYPFDLMIAMICFSTYWFKQYFRTFSESQELTKKLQKADKQKDEFLTSVAHEMRNPLHGMINISQAVLENEKAHLRANSAKHLELMVSIGRHMSTLLDALLDLERLKENRIKMKRRLLSLYDVTETVLDMIRFLTDEQSIRLVNRVPANLPPVFADENRVIQILFNLLHNAVKYAQADEVSVHASIQGDWVNVSVVDTGIGIHETLLDTIFERYTQGNAESAAMENGVGLGLHICKQLVELHGGTLTVHSTPGQGSVFTFSLELANTEHPKEEKVQDSTKIPVLSKTDTAKQQQALDKSLPNQGSVRILAVDDDPINLRILEIIFSEAPYHVVSVTSSQEALALVESEEWDVVIADVMMPYMSGYELTRMIRQRASNFELPILLLTARSHPEDIVAGFLAGANDYVTKPIEGLELKARVNTLIHLKQSIHERLRMEAALLQAQIHPHFLFNTIDTIASLSTIDHDRMIHLLVEFGNYLRKSFDSENFQKLVPLEHELELLRSYLYIQKERFGDRLTIDWDIDQHLHVLIPPLIIQPLVENAIRHGILQRIHGGTVQIRIIDQGKHVEVTIADNGVGMTEEEIRKILHTTCQTKGIGIYNTNWRLKQLFGEELHIKSTPGEGTTIFFKIPKT
>NZ_CP015436.1|WP_082063832.1|3256464_3257655_+|response-regulator
MTSFRQRTIRVGKEEDDMRVILVDDEPLILDRFAKLITGNEGIQLVGKFSDPRQAFEAIVQKQPDVVFLDVEMPELNGIEMAEKIQTVLPRTKVVFVTAYREYAVEAFELNAVDYLVKPVQRERLNETIRRLKKELVVKQPFHSPNQDVMVCCFQSLRFKQTHKPSYFLDVHWRTTKAKELFSFLIHHRHNPVHKAAIIDQLWPDIDYEKSVTQLYSTVYQIRQALKKAGIHITIVSFNHSYKLDLNGIRLDVDEWERRINEQPIMTEATLDQHREILDLYGGDYLAESGYLWAESERERLRALWLHHIRKVTDFLLAKKDYIGAIALCHRIQDYYPFMEDSYFELMQLYNKLGDRKAVIQQYMNLKQMLKEEYEMDPPATIKTWYHIWKEDNDPL
>NZ_CP015436.1|WP_044746211.1|3251158_3256369_+|collagen-binding-domain-containing-protein
MRKRKVSIAVLTLVFFLTSFFSHLGLPVGAEDKGKEKLVLVDVKMFNQKGKEIDSTRYPDRRVAVDESLQLRYHWKLSGAEFKAGERQSFGLPKELKIQQEQNGSLVSNDNVTVGTFQATMDGTVTITFNEAQHIEEAQGTLTIQSVLKQDAVGDQKNIPVSFALDDRQVIIPVPLQEMDKEQELDGEKKAMESEKDLNETTAANPSGDDGKENEAETTENQAEKSSASSSEAITENIITDVKLYQRNEDEAERLLAPGEEIRVDNPYDQFKVRIHYSFALPNNHDYGAGSTFTIHVPDVFNVPPNPEPVPLRTPQDVEYASFVINNQGEVVITFNENISENSNISGFVELWSEFDSHYSGEAEQVISFPISEGVSIDYPVTLIPRNAEAIHKSGVANKSYNTETITWTVDLNKNLQTIENAIVQDETEGNHAFVPGSIKVYKLAMRTDGSIDESKTEELTNHGFGSQFPLELGTIDSAYRIVYQTKIAPGDTGTSYKNKVTLFGDGMEDVSSETSVGVTRGQPLDKRASGYDSSTQMVTWEIKYNYDEKEIAANQAKLTDIFGEGHELVYTTEAKDGIEVFEVDIDPDTGQEGEQRKIDDFSVTSNPDGFVLDFGKALHKAYKITYKTKASERVEQGLTLTNTVRDEFDHEKTASRPISQQIFHKSHNGGQTNYDGKETGWTITINGDEYHMENVQVVDTLPAGFTPKDIVVTHGGQSLQAEEDYEWKFEDGKLTIDFLQPIDQRVVITYKTEIDFDNVQPEANGSFTNSAQLTWDADGNNGSGEKEAEAVFNPDNYTKNNGFKSGSYNLETKAIDWTIGVNYNKATLKDVVVEDIIQGAQNFDLESVRVFHMELTGGANGYEKGAELAQDEYEVVEINGPNGEPGFQVKLGDIDSPYLITFQTNLNNQLVFAEYQNKAIVKSEGKDDLELTASVKPTRGGEYTKKDVNQDQNNPRIAHWKVDINFTQSTVSNVSLVDTPSKNQAFLKDTFTLYETIVTENNIVKGEALTEGVDYSLNFQTNEDDTETFTLKFLDKIERPYILEYDTYILYKGDGNISNDAHFNGDETKSVPTDDSRRVAINLSGMGGGIDGEIGGLEISKIDADSKEPLEGAEFTLYDQSGQIALKTATTGEDGKVQFSNLLYGDYILKETKAPEGYFVGIADQRTVNVNSELIPVVVENKKMMRAVELTKVDKDSEKRLGGAVFELQKKNGEAYEAIARFTTDGQGIIYQDQLEPGEYQFIEISAPYGYRKQSEPIPFTIVDQQTEAVKVTAYNVRVPDQGGIINGQVELTKVDLDNKRAPLPGAVFDLQDSKGNTIQKGLTTNHAGKLLVTGLAPGSYQFIETEAPFGYQLNPTPIPFTIHQGDSTIVEVSAENELMTGSVQLIKVDRDNRQLRLAGAVFELQDDKGNTLRTGLVTDHEGTLTVTGLKPGNYQFVETKAPFGYDIDQTPISFTIEKGQVETIVKQMENRVSTGSVELMKVDKENNEKRLKGAEYRLESASGDVLLKGLTTNDEGKLVVHDLKPGRYQFIETKAPKHYQLDSTPIMFTIEKGQTITLSIVAQNELISGAVQLTKVDQQNHGYTLAGAVFDLRDDKGNILQKGLTTNREGKLLVNDLKPGVYQFVETKAPKGYQLRTTPVSFTIPLSPDKVVQVIVTNEKQELTGEKIDRPGNLGPPVDPQDHQASYGSNHAEGIKAGETLPNTATSMFNGLFIGAILLLAGLLLLMKKKGKQR
>NZ_CP015436.1|WP_044746212.1|3250155_3250428_-|hypothetical-protein
MDYKANSKGDIWGNDNQHGAKACSRHLVKEADLQYAILHDLKTLASSLSSAPPIHSRKEKKRIRKANEIPTEKNRMIAIKKEENSELISG
>NZ_CP015436.1|WP_066329555.1|3248405_3249932_+|IS1182-family-transposase
MYTYYNRDQLILPMDLEIFIPKHHLCRIVDLAVEKMDPALFVSLYPGGGRPAYHPKMMLKVILYAYANRIYSSRQIAKQLKENIYFMWLSGHQTPDFRTINRFRSERMKDILYETFFSIVDLLRQEGLVKLEDYFLDGTKIEANANRYTFVWRKSTEKYDQKLEEKFRKIVASIEQVTKEDEEAEQEGDFQEKLEASPITSERIEAVIEQVEERLKKEPKNRTLKKAKQQLEQDLLPRKKKYEECKERLGERNSFSKTDPDATFMRMKDDHMKNGQLKPGYNGQIGTENPFITGFSVHQRAGDAGCFIPHLEQLAAYGSEENYTYCEKKEIVALIKYNTLDREQTKAWAKEIGRIENMTYDEELDEWICAKGERLVFGYERKETTDNGYVTVKRTYRCTACAGCPFQATCAKGKDTNTIRVSLKNQQQRQEIRKRLSTEEGAATYRKRQIENEPVFGQIKHNQQFQRFLLRGLPKITLEWGLICAAHNLRKWAATTDPTKKKQDQIQK
>NZ_CP015436.1|WP_044741390.1|3246897_3248277_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAKIEAPVKKNEYYDVVFEDLTHDGAGVAKVDGFPIFVANGLPEERAKIKVIKVKKGYGYGRLVELYQPSPDRIDAPCAIYKQCGGCQLQHLSYEGQLKAKHKHVQEVMTRIGKITNVTIHPVLGMKDPWRYRNKAQVPVGERDGGLVAGFYQQRTHDIIDMQACLIQQEMNDVVVQTVKSICEAYGVEPYDEATHRGTLRHIMARYGAATKEVMVVLITRTRELPHKKKIVQAIAEQVPNVKSIIQNINPKRTNVIMGDETNVLWGAEYIYDDIGGIQFAISARSFYQVNPEQTRVLYEKALEYAQLTGEETVIDAYCGIGTISLFLAKKAKKVYGVEMVPEAIEDAKRNAKLNGITNAEFAGGEAETVIPHWYEQGVQADCVVVDPPRKGCDEALLQTIIAMKPKRVVYVSCNPATLARDLRILEDGGYQTLEIQPVDMFPHTNHVECCALIKRVEE
>NZ_CP015436.1|WP_044741389.1|3245886_3246813_+|diacylglycerol-kinase
MKRARIIYNPTSGRELFRKHLPDVLIRLEEAGYETSCHATTGAGDATEAAKQAVERRFDLVIAAGGDGTIHEVVNGIANQDYRPQLGIIPVGTTNDFARAIGVPRSIEGACDVIINGEAVSIDIGSVIIEEKTRYFINIAGGGRLTELTYEVPSKLKTMLGQLAYYLKGIEMLPSIRAAEARIEYDGKVYEGEIMLFLVSLTNSVGGFEKLAPDSSLNDGMFDLIILKKTNLAEFIRVVTLASRGEHINDPHLIYTKANRIKVTTPNHMQLNLDGEYGGMLPGEFVNLYRHLEVFVPKEKAEQMRAGF
>NZ_CP015436.1|WP_052660998.1|3266563_3267427_+|DUF4097-domain-containing-protein
MEKKIPVLLGLIGLISLSLIFWNPVDFSWWPFGKPKNQSVTSEGIDMIEMDISGVSTTIIPKHREDIKADLDGKGKLTVKRQGDKVSISVERKRFGWPFHNKAKLNLYIPEDYDRNMVINLGSGNLSFSGHSKNKPMKLDKLLFDVSSGNVKLKNISVQRFEHDSSSGNADIDSLTAESGTFDIRSGNLKVRHYSGAIEADLSSGNVSMQMDELTGAVDIEVSSGGVDLHLPKSADFTLNGKTSSGNITCDFPLTKKKIEHKSIKGVHGSGEHPIDLNVSSGHINIY
>NZ_CP015436.1|WP_044744715.1|3268074_3268839_+|ABC-transporter-permease
MGNGYFVSELKRAFFSRNTLISQLLIFACIFIGSFEFIFHPYPGVNAIYLFMYSHSEGTSAILSLLFPVLVSLPFAASYVTDVRTGFIHYISYRMSRKKYLLIRLLVNGLVSGYVIASSLLVSFILFLLIKKFDVSVVDTLNIIVLRGVYEYSPVLFVLIMILNSFVCGVVFSTLALGVSTFIHNQYLTIVFPFAFYIFSGTLLFQINKFLNSAMLFDLEYDPDLKISYVALYDLILLIIGVALFFIGAAKHAE
>NZ_CP015436.1|WP_044744713.1|3269613_3270411_+|hypothetical-protein
MKYLRLLRYFLRTLLYKRNLIIILLTFVVFHFVSFNFYNWQNAGPASLLITFYYGPAYFNFDLLRWLLHQTPIYVLCGNFLNKQLNENNLWILPRAGQFSLWLNGMISANFIFIVIYYSIGYSISMLLSYLINGGKSMSASLDDIPLLNTYTPLKLMLFQFVLLILLTFFVVLMSHVVSILTGNSIAGFSISVMFIFISVGLLQSSPYVNKWLPFSQGVLAARNVEVSPFAWSLSYYFFVIFMIMILFHYICCKRMDSLLHKNTL
>NZ_CP015436.1|WP_044744712.1|3270422_3271103_+|ATP-binding-cassette-domain-containing-protein
MNSHNDSAVKIVNLSKEIKGHKILKDIHLEVSRGKICGIVGRNGSGKTMLFKVIAGLIRPTSGMVEIFGDPITSGKFPKNIGLLLDKNGLLPHYSGLENLKLLASINQIISLEEIKRTLEIVGLDPEDKRPTKYYSLGMKQRLGIAQAIMEKPSLLILDEPMNGLDEDGVADIRNLIKNLKTQNVTILLSSHNSEDINLLCDEVYKMDKGCLSALNNRKSEFTPHT
>NZ_CP015436.1|WP_044744711.1|3271458_3273192_+|M48-family-metalloprotease
MPDLTISILTAVIGFFLSFLVDFFKKWRSSVYVGIFAAIFGIGWIVYVFLEQGFLEATIIFSILLFSFFSFPVPERSGAQSQEIIGKLKKQGSREIVLSKNKERILLDFLFAGLFMGIAVLYFLFGPNSPITLVLLYSFVSLVAGLTKRIRLFRSLRFFYAEQEEALYAISFIETKKYPLKELSEASVQTRPDVLQLFPLFSLFSPHTDYTTSVGKTWKLSFSGEKIYLTPDPSESMDFVLREERKKLEEIEVKPFYHQSNWKRLLGKGYFAATVKGVGAYAALLTLFTFMGISPLVTAMVILLFWIFNLWISDRVLKMALDMKEISDPQLLPIIEKVFSRAGLSHVTIYVTESVEYNGLAAGANIGRSLVALTSETLKLPLEAIEGILAHEAIHVKKRDVLTGQLLRFVLIGWIVIGIFFIHETYPNLLKNHQILVFFVLWILIFLLPAFQSLITQWMEVRADHLGATLLDGGNVQMAKSLTILSEHQDQASEKAIGYHVVPEEEQEAEEKDERLSSLERDSCFFRFLEFQFMSHPPMYWRVHSLRTTETGWNIGKIKLWWNSRFQESLPNWKKNL
>NZ_CP015436.1|WP_044744710.1|3273457_3273919_-|DUF2269-domain-containing-protein
MKPLLFVHIVGVVLFLGNISVTAFWKMRADQTRHRDFIHRTAKNVMLADFVFTIPGLLLIIISGVWMAVQAGYLVSGFNWLTLSLILFALTGILWAGVLLPLQRKMIHLSAPTAENEFNIESYRQASRHWMIFGTLATLLPVLILYLMISKGV
>NZ_CP015436.1|WP_044744709.1|3273928_3274525_-|TetR/AcrR-family-transcriptional-regulator
MKREQKREQTKRLLLDAVKELIYEKGCTNTTLHDIMERSGLSKGAIFHYVKSKDELFSWVLKERLDKINERFFHQASQKASFEEPLYEITSRLSDLENPQDPGNQVLMYLLGKSDQPDIKKILQQYYEQAIHMSKSWIIAGQEAGVISQSIDADKTAELFTLISFGLRMRSVIDSNGYFFNQDFAELISERLQSKAER
>NZ_CP015436.1|WP_044743901.1|3277479_3277818_+|hypothetical-protein
MKKSLISASLALDLLASSTSAFAATYEYSSKGRNFDKSWTAYNSGTNWVIEYGFNTDFINEDFTTHTKHSTTSHIAKVRNANGTFSDQDSAGNWAGIEVTHSGSTVYYSITY
>NZ_CP015436.1|WP_044743900.1|3278444_3280418_+|hypothetical-protein
MKAIKYIISFCIIFVGMLIIGESHIFYLDNFYTRFDHTTMYLQSDTTDEEMVQDILRSAERHKVDVFTFIRSPRSTFLTEFDIYGTSGVERHLNEQVQLSEREYMSLFLGSLRFTFHQLEDIPTMENVHDFYVIGRDKQVYEFKMDLINKYAGNHPKDGYVSKESRNTIMSIWLLITSIILLLSYYDVILQKKENLIRISLGERISKIVWRNIVLDSFVLISLFVIVVYVLSKYTYVFFRLDISLIFFSLLLLLNAFLYVNLYFFNVKEVFSNVKGSKKLLSLNYGLKLVTAVITIFVLSSNIMLISESYRLYKQKSFFKDYADYYYTRLEYKPVENSDVAFDVGGNESTMVQVTFYKEFFDKYNATLLASTSGLFNGQGILANKNALDYLSGEIKELRNQPLTKEIYVLLPKKWKGDARIIDEINSAILFYIGDQFTDDYDLIYYTGNKEIISIDENYTYGSKLVKDPIIIYDNRAADALEFPIENQSPITYVHEIMYKIPSEQEFNRFVEAHDLKGQIVAKTNVFENYKNKWVMAKRVLYMNSIFSLLVLLLEWIIISSIIKLEYEVNAIELSIKKVLGHSIFEKNRKIVLMTAVTTLLSIISAVWVAYALGLSDVYYLVVGGVVIIVLELLVIVFYIWKIENAKISKILKGGNI
>NZ_CP015436.1|WP_044743899.1|3280414_3281023_+|ATP-binding-cassette-domain-containing-protein
MIEIRNLTKKFDEKIVFSNFNLKIEDGEFVIISGSSGCGKTTLLNMIGAIEKIDHGDIIVDGIDIKNKRNHLHYFRTKIGFLFQNFALVDNKTVKENLKMIRKDCRTDLSIEEVLRKVGLEEKINKKVYTLSGGEQQRVALARLMLKKCDIILADEPTGSLDKKNAEAVLDILNQFNEQGKTIILVTHDEEIKKRGNRVVNL

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Crispr_ID: NZ_CP015436_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015436_12

3275064-3276897

Orphan

Consensus_repeat	Method
GTTTGTATCTTAACTATGAGGGATTGAAACAA	PILER-CR
GTTTGTATCTTAACTATGAGGGATTGAAAC	CRISPRCasFinder
GTTTGTATCTTAACTATGAGGGATTGAAAC	CRT
GTTTGTATCTTAACTATGAGGGATTGAAAC	PILER-CR

27 spacers

The CRISPR arrays of NZ_CP015436_12

>merge|NZ_CP015436|12|3275064-3276897|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTTTGTATCTTAACTATGAGGGATTGAAACAAGAAGCACTGGAACTGATGAAACATGGGGGACACGGTTTGTATCTTAACTATGAGGGATTGAAACACGTATTCCATCACGACTGACGGAACGATGTCTACGTTTGTATCTTAACTATGAGGGATTGAAACTAAAGAGAAATATGGTTTATACTTTTCCATCGAAAGTGTTTGTATCTTAACTATGAGGGATTGAAACAAACACGAATTGAAATCATGCAACAAGCATTAGATGATGTTTGTATCTTAACTATGAGGGATTGAAACCAGGTATTAAGATCAAAGATAACGTTCCACATTACAAAGTTTGTATCTTAACTATGAGGGATTGAAACATTCAACGTGATATGGAAGGTGGAACAGCAGTTGTCGTTTGTATCTTAACTATGAGGGATTGAAACATCTTTCAACTATATTGCGGAAAGTGAGACAAAAAGGTTTGTATCTTAACTATGAGGGATTGAAACCCACATTTCATTCCTCCCAAGCATGATATCGATGTCGTTTGTATCTTAACTATGAGGGATTGAAACCGGAACCACGGTCTTTCGGTGTTCCTCCACTGGGCGAAGTTTGTATCTTAACTATGAGGGATTGAAACTTCATTTTGCAGCTCACTCATAATGTTTTGTCCTAGCGTTTGTATCTTAACTATGAGGGATTGAAACAGGAGTACATCAATTGGTAACTGGTGGCCAGATTCAAAGTTTGTATCTTAACTATGAGGGATTGAAACGCGGCAGGGGAAAAGAAAATCGTTTCTTTCGATGTGGGTTTGTATCTTAACTATGAGGGATTGAAACCATACTCTTGTTTATGTATACGATGAGATTGCTCGTTTGTTTGTATCTTAACTATGAGGGATTGAAACCTGGATATGTTCGGAGAAATCCTCGCTGAAATGGGAGAGTTTGTATCTTAACTATGAGGGATTGAAACTATCGCCTGTAAGTGCATAGCCAATTGCCTTTTGCGTTTGTATCTTAACTATGAGGGATTGAAACATTCCACTTGCCGCTTTTCTTCATCAAGGGCTTTAAGGTTTGTATCTTAACTATGAGGGATTGAAACCTGGCCCACCCGGCCAGCGCGGCCTACGGATTGAATGTTTGTATCTTAACTATGAGGGATTGAAACCAATGCTAATTTCATAGAGTTTGACCTCCTGAACAGTTGTTTGTATCTTAACTATGAGGGATTGAAACATTTTCTGTTCACTTCGGAAAGGCTACGGGTAAAATTGTTTGTATCTTAACTATGAGGGATTGAAACAAGCCGAGTGGAATGACCCAACCATTTTTGTCTGGCGGTTTGTATCTTAACTATGAGGGATTGAAACTCAAAAATGCTAAAGCTGGCACGTTTGAGAAATCTACGTTTGTATCTTAACTATGAGGGATTGAAACAGAATCGATCATAACGATGAGGACAGCACCATCGACAGTTTGTATCTTAACTATGAGGGATTGAAACGCTGCATCGGGAGCATCTGTCATTGCGATGGCAGCCGTTTGTATCTTAACTATGAGGGATTGAAACAATTCATTTTGACTGGCTTTGACTTTTTCTTTGCCTCAGTTTGTATCTTAACTATGAGGGATTGAAACTTTGTCACATCGCCTTTGCGATCTCAACGAGTAATTGTTTTTATCTTAACTATGAGGGATTGAAACTCACAGCAAAGAATGGCAGCGTGTTCGACGTACGGCGTTTTTATCTTAACTATGAGGGATTGAAACTCTGGTAATCGTATGTGATGCTGTAATCTCCCCAGTGTTTTTATCTTAACTATAAGGGATTAAAAC

>NZ_CP015436|12|11|3275064-3275293|PILER-CR
GTTTGTATCTTAACTATGAGGGATTGAAACAA	GAAGCACTGGAACTGATGAAACATGGGGGACACG
GTTTGTATCTTAACTATGAGGGATTGAAACAC	GTATTCCATCACGACTGACGGAACGATGTCTAC
GTTTGTATCTTAACTATGAGGGATTGAAACTA	AAGAGAAATATGGTTTATACTTTTCCATCGAAAGT
GTTTGTATCTTAACTATGAGGGATTGAAACAAACACGAATTGAAATCATGCAACAAGCATTAGATGATGTTTGTATCTTAACTATGAGGGATTGAAACCAGGTATTAAGATCAAAGATAACGTTCCACATTACAAAGTTTGTATCTTAACTATGAGGGATTGAAAC	ATTCAACGTGATATGGAAGGTGGAACAGCAGTTGTC
GTTTGTATCTTAACTATGAGGGATTGAAAC	ATCTTTCAACTATATTGCGGAAAGTGAGACAAAAAG
GTTTGTATCTTAACTATGAGGGATTGAAAC	CCACATTTCATTCCTCCCAAGCATGATATCGATGTC
GTTTGTATCTTAACTATGAGGGATTGAAAC	CGGAACCACGGTCTTTCGGTGTTCCTCCACTGGGCGAA
GTTTGTATCTTAACTATGAGGGATTGAAAC	TTCATTTTGCAGCTCACTCATAATGTTTTGTCCTAGC
GTTTGTATCTTAACTATGAGGGATTGAAAC	AGGAGTACATCAATTGGTAACTGGTGGCCAGATTCAAA
GTTTGTATCTTAACTATGAGGGATTGAAAC	GCGGCAGGGGAAAAGAAAATCGTTTCTTTCGATGTGG
GTTTGTATCTTAACTATGAGGGATTGAAAC	CATACTCTTGTTTATGTATACGATGAGATTGCTCGTTT
GTTTGTATCTTAACTATGAGGGATTGAAAC	CTGGATATGTTCGGAGAAATCCTCGCTGAAATGGGAGA
GTTTGTATCTTAACTATGAGGGATTGAAAC	TATCGCCTGTAAGTGCATAGCCAATTGCCTTTTGC
GTTTGTATCTTAACTATGAGGGATTGAAAC	ATTCCACTTGCCGCTTTTCTTCATCAAGGGCTTTAAG
GTTTGTATCTTAACTATGAGGGATTGAAAC	CTGGCCCACCCGGCCAGCGCGGCCTACGGATTGAAT
GTTTGTATCTTAACTATGAGGGATTGAAAC	CAATGCTAATTTCATAGAGTTTGACCTCCTGAACAGTT
GTTTGTATCTTAACTATGAGGGATTGAAAC	ATTTTCTGTTCACTTCGGAAAGGCTACGGGTAAAATT
GTTTGTATCTTAACTATGAGGGATTGAAAC	AAGCCGAGTGGAATGACCCAACCATTTTTGTCTGGCG
GTTTGTATCTTAACTATGAGGGATTGAAAC	TCAAAAATGCTAAAGCTGGCACGTTTGAGAAATCTAC
GTTTGTATCTTAACTATGAGGGATTGAAAC	AGAATCGATCATAACGATGAGGACAGCACCATCGACA
GTTTGTATCTTAACTATGAGGGATTGAAAC	GCTGCATCGGGAGCATCTGTCATTGCGATGGCAGCC
GTTTGTATCTTAACTATGAGGGATTGAAAC	AATTCATTTTGACTGGCTTTGACTTTTTCTTTGCCTCA
GTTTGTATCTTAACTATGAGGGATTGAAAC	TTTGTCACATCGCCTTTGCGATCTCAACGAGTAATT
GTTTTTATCTTAACTATGAGGGATTGAAAC	TCACAGCAAAGAATGGCAGCGTGTTCGACGTACGGC


>NZ_CP015436|12|12|3275064-3276897|CRISPRCasFinder
GTTTGTATCTTAACTATGAGGGATTGAAAC	AAGAAGCACTGGAACTGATGAAACATGGGGGACACG
GTTTGTATCTTAACTATGAGGGATTGAAAC	ACGTATTCCATCACGACTGACGGAACGATGTCTAC
GTTTGTATCTTAACTATGAGGGATTGAAAC	TAAAGAGAAATATGGTTTATACTTTTCCATCGAAAGT
GTTTGTATCTTAACTATGAGGGATTGAAAC	AAACACGAATTGAAATCATGCAACAAGCATTAGATGAT
GTTTGTATCTTAACTATGAGGGATTGAAAC	CAGGTATTAAGATCAAAGATAACGTTCCACATTACAAA
GTTTGTATCTTAACTATGAGGGATTGAAAC	ATTCAACGTGATATGGAAGGTGGAACAGCAGTTGTC
GTTTGTATCTTAACTATGAGGGATTGAAAC	ATCTTTCAACTATATTGCGGAAAGTGAGACAAAAAG
GTTTGTATCTTAACTATGAGGGATTGAAAC	CCACATTTCATTCCTCCCAAGCATGATATCGATGTC
GTTTGTATCTTAACTATGAGGGATTGAAAC	CGGAACCACGGTCTTTCGGTGTTCCTCCACTGGGCGAA
GTTTGTATCTTAACTATGAGGGATTGAAAC	TTCATTTTGCAGCTCACTCATAATGTTTTGTCCTAGC
GTTTGTATCTTAACTATGAGGGATTGAAAC	AGGAGTACATCAATTGGTAACTGGTGGCCAGATTCAAA
GTTTGTATCTTAACTATGAGGGATTGAAAC	GCGGCAGGGGAAAAGAAAATCGTTTCTTTCGATGTGG
GTTTGTATCTTAACTATGAGGGATTGAAAC	CATACTCTTGTTTATGTATACGATGAGATTGCTCGTTT
GTTTGTATCTTAACTATGAGGGATTGAAAC	CTGGATATGTTCGGAGAAATCCTCGCTGAAATGGGAGA
GTTTGTATCTTAACTATGAGGGATTGAAAC	TATCGCCTGTAAGTGCATAGCCAATTGCCTTTTGC
GTTTGTATCTTAACTATGAGGGATTGAAAC	ATTCCACTTGCCGCTTTTCTTCATCAAGGGCTTTAAG
GTTTGTATCTTAACTATGAGGGATTGAAAC	CTGGCCCACCCGGCCAGCGCGGCCTACGGATTGAAT
GTTTGTATCTTAACTATGAGGGATTGAAAC	CAATGCTAATTTCATAGAGTTTGACCTCCTGAACAGTT
GTTTGTATCTTAACTATGAGGGATTGAAAC	ATTTTCTGTTCACTTCGGAAAGGCTACGGGTAAAATT
GTTTGTATCTTAACTATGAGGGATTGAAAC	AAGCCGAGTGGAATGACCCAACCATTTTTGTCTGGCG
GTTTGTATCTTAACTATGAGGGATTGAAAC	TCAAAAATGCTAAAGCTGGCACGTTTGAGAAATCTAC
GTTTGTATCTTAACTATGAGGGATTGAAAC	AGAATCGATCATAACGATGAGGACAGCACCATCGACA
GTTTGTATCTTAACTATGAGGGATTGAAAC	GCTGCATCGGGAGCATCTGTCATTGCGATGGCAGCC
GTTTGTATCTTAACTATGAGGGATTGAAAC	AATTCATTTTGACTGGCTTTGACTTTTTCTTTGCCTCA
GTTTGTATCTTAACTATGAGGGATTGAAAC	TTTGTCACATCGCCTTTGCGATCTCAACGAGTAATT
GTTTTTATCTTAACTATGAGGGATTGAAAC	TCACAGCAAAGAATGGCAGCGTGTTCGACGTACGGC
GTTTTTATCTTAACTATGAGGGATTGAAAC	TCTGGTAATCGTATGTGATGCTGTAATCTCCCCAGT
GTTTTTATCTTAACTATAAGGGATTAAAAC

>NZ_CP015436|12|11|3275064-3276897|CRT
GTTTGTATCTTAACTATGAGGGATTGAAAC	AAGAAGCACTGGAACTGATGAAACATGGGGGACACG
GTTTGTATCTTAACTATGAGGGATTGAAAC	ACGTATTCCATCACGACTGACGGAACGATGTCTAC
GTTTGTATCTTAACTATGAGGGATTGAAAC	TAAAGAGAAATATGGTTTATACTTTTCCATCGAAAGT
GTTTGTATCTTAACTATGAGGGATTGAAAC	AAACACGAATTGAAATCATGCAACAAGCATTAGATGAT
GTTTGTATCTTAACTATGAGGGATTGAAAC	CAGGTATTAAGATCAAAGATAACGTTCCACATTACAAA
GTTTGTATCTTAACTATGAGGGATTGAAAC	ATTCAACGTGATATGGAAGGTGGAACAGCAGTTGTC
GTTTGTATCTTAACTATGAGGGATTGAAAC	ATCTTTCAACTATATTGCGGAAAGTGAGACAAAAAG
GTTTGTATCTTAACTATGAGGGATTGAAAC	CCACATTTCATTCCTCCCAAGCATGATATCGATGTC
GTTTGTATCTTAACTATGAGGGATTGAAAC	CGGAACCACGGTCTTTCGGTGTTCCTCCACTGGGCGAA
GTTTGTATCTTAACTATGAGGGATTGAAAC	TTCATTTTGCAGCTCACTCATAATGTTTTGTCCTAGC
GTTTGTATCTTAACTATGAGGGATTGAAAC	AGGAGTACATCAATTGGTAACTGGTGGCCAGATTCAAA
GTTTGTATCTTAACTATGAGGGATTGAAAC	GCGGCAGGGGAAAAGAAAATCGTTTCTTTCGATGTGG
GTTTGTATCTTAACTATGAGGGATTGAAAC	CATACTCTTGTTTATGTATACGATGAGATTGCTCGTTT
GTTTGTATCTTAACTATGAGGGATTGAAAC	CTGGATATGTTCGGAGAAATCCTCGCTGAAATGGGAGA
GTTTGTATCTTAACTATGAGGGATTGAAAC	TATCGCCTGTAAGTGCATAGCCAATTGCCTTTTGC
GTTTGTATCTTAACTATGAGGGATTGAAAC	ATTCCACTTGCCGCTTTTCTTCATCAAGGGCTTTAAG
GTTTGTATCTTAACTATGAGGGATTGAAAC	CTGGCCCACCCGGCCAGCGCGGCCTACGGATTGAAT
GTTTGTATCTTAACTATGAGGGATTGAAAC	CAATGCTAATTTCATAGAGTTTGACCTCCTGAACAGTT
GTTTGTATCTTAACTATGAGGGATTGAAAC	ATTTTCTGTTCACTTCGGAAAGGCTACGGGTAAAATT
GTTTGTATCTTAACTATGAGGGATTGAAAC	AAGCCGAGTGGAATGACCCAACCATTTTTGTCTGGCG
GTTTGTATCTTAACTATGAGGGATTGAAAC	TCAAAAATGCTAAAGCTGGCACGTTTGAGAAATCTAC
GTTTGTATCTTAACTATGAGGGATTGAAAC	AGAATCGATCATAACGATGAGGACAGCACCATCGACA
GTTTGTATCTTAACTATGAGGGATTGAAAC	GCTGCATCGGGAGCATCTGTCATTGCGATGGCAGCC
GTTTGTATCTTAACTATGAGGGATTGAAAC	AATTCATTTTGACTGGCTTTGACTTTTTCTTTGCCTCA
GTTTGTATCTTAACTATGAGGGATTGAAAC	TTTGTCACATCGCCTTTGCGATCTCAACGAGTAATT
GTTTTTATCTTAACTATGAGGGATTGAAAC	TCACAGCAAAGAATGGCAGCGTGTTCGACGTACGGC
GTTTTTATCTTAACTATGAGGGATTGAAAC	TCTGGTAATCGTATGTGATGCTGTAATCTCCCCAGT
GTTTTTATCTTAACTATAAGGGATTAAAAC

>NZ_CP015436|12|12|3275398-3276831|PILER-CR
	GAAGCACTGGAACTGATGAAACATGGGGGACACG
GTTTGTATCTTAACTATGAGGGATTGAAACAC	GTATTCCATCACGACTGACGGAACGATGTCTAC
GTTTGTATCTTAACTATGAGGGATTGAAACTA	AAGAGAAATATGGTTTATACTTTTCCATCGAAAGT
GTTTGTATCTTAACTATGAGGGATTGAAACAAACACGAATTGAAATCATGCAACAAGCATTAGATGATGTTTGTATCTTAACTATGAGGGATTGAAACCAGGTATTAAGATCAAAGATAACGTTCCACATTACAAAGTTTGTATCTTAACTATGAGGGATTGAAAC	ATTCAACGTGATATGGAAGGTGGAACAGCAGTTGTC
GTTTGTATCTTAACTATGAGGGATTGAAAC	ATCTTTCAACTATATTGCGGAAAGTGAGACAAAAAG
GTTTGTATCTTAACTATGAGGGATTGAAAC	CCACATTTCATTCCTCCCAAGCATGATATCGATGTC
GTTTGTATCTTAACTATGAGGGATTGAAAC	CGGAACCACGGTCTTTCGGTGTTCCTCCACTGGGCGAA
GTTTGTATCTTAACTATGAGGGATTGAAAC	TTCATTTTGCAGCTCACTCATAATGTTTTGTCCTAGC
GTTTGTATCTTAACTATGAGGGATTGAAAC	AGGAGTACATCAATTGGTAACTGGTGGCCAGATTCAAA
GTTTGTATCTTAACTATGAGGGATTGAAAC	GCGGCAGGGGAAAAGAAAATCGTTTCTTTCGATGTGG
GTTTGTATCTTAACTATGAGGGATTGAAAC	CATACTCTTGTTTATGTATACGATGAGATTGCTCGTTT
GTTTGTATCTTAACTATGAGGGATTGAAAC	CTGGATATGTTCGGAGAAATCCTCGCTGAAATGGGAGA
GTTTGTATCTTAACTATGAGGGATTGAAAC	TATCGCCTGTAAGTGCATAGCCAATTGCCTTTTGC
GTTTGTATCTTAACTATGAGGGATTGAAAC	ATTCCACTTGCCGCTTTTCTTCATCAAGGGCTTTAAG
GTTTGTATCTTAACTATGAGGGATTGAAAC	CTGGCCCACCCGGCCAGCGCGGCCTACGGATTGAAT
GTTTGTATCTTAACTATGAGGGATTGAAAC	CAATGCTAATTTCATAGAGTTTGACCTCCTGAACAGTT
GTTTGTATCTTAACTATGAGGGATTGAAAC	ATTTTCTGTTCACTTCGGAAAGGCTACGGGTAAAATT
GTTTGTATCTTAACTATGAGGGATTGAAAC	AAGCCGAGTGGAATGACCCAACCATTTTTGTCTGGCG
GTTTGTATCTTAACTATGAGGGATTGAAAC	TCAAAAATGCTAAAGCTGGCACGTTTGAGAAATCTAC
GTTTGTATCTTAACTATGAGGGATTGAAAC	AGAATCGATCATAACGATGAGGACAGCACCATCGACA
GTTTGTATCTTAACTATGAGGGATTGAAAC	GCTGCATCGGGAGCATCTGTCATTGCGATGGCAGCC
GTTTGTATCTTAACTATGAGGGATTGAAAC	AATTCATTTTGACTGGCTTTGACTTTTTCTTTGCCTCA
GTTTGTATCTTAACTATGAGGGATTGAAAC	TTTGTCACATCGCCTTTGCGATCTCAACGAGTAATT
GTTTTTATCTTAACTATGAGGGATTGAAAC	TCACAGCAAAGAATGGCAGCGTGTTCGACGTACGGC
GTTTTTATCTTAACTATGAGGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015436.1\|WP_044746207.1\|3262254_3262788_+\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|223340
NZ_CP015436.1\|WP_044744713.1\|3269613_3270411_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044743899.1\|3280414_3281023_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|188353
NZ_CP015436.1\|WP_052660998.1\|3266563_3267427_+\|DUF4097-domain-containing-protein	unknown	unknown	gnl\|CDD\|372574
NZ_CP015436.1\|WP_044744710.1\|3273457_3273919_-\|DUF2269-domain-containing-protein	unknown	unknown	gnl\|CDD\|370783
NZ_CP015436.1\|WP_044743900.1\|3278444_3280418_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273736
NZ_CP015436.1\|WP_044744711.1\|3271458_3273192_+\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|320688
NZ_CP015436.1\|WP_044744709.1\|3273928_3274525_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP015436.1\|WP_044743894.1\|3287195_3288608_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|223903
NZ_CP015436.1\|WP_044746208.1\|3261021_3261603_+\|class-D-sortase	unknown	unknown	gnl\|CDD\|320677
NZ_CP015436.1\|WP_044743901.1\|3277479_3277818_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044744715.1\|3268074_3268839_+\|ABC-transporter-permease	unknown	unknown	unknown
NZ_CP015436.1\|WP_044743908.1\|3282908_3283277_-\|glyoxalase	unknown	unknown	gnl\|CDD\|319909
NZ_CP015436.1\|WP_044743898.1\|3281019_3281469_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_156487575.1\|3284166_3284847_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368217
NZ_CP015436.1\|WP_156487527.1\|3283640_3283784_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044743895.1\|3285338_3286544_+\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NZ_CP015436.1\|WP_044743907.1\|3288700_3289786_+\|nitric-oxide-synthase-oxygenase	unknown	unknown	gnl\|CDD\|376957
NZ_CP015436.1\|WP_044744712.1\|3270422_3271103_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213235
NZ_CP015436.1\|WP_044746206.1\|3262916_3263204_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP015436.1\|WP_044743895.1\|3285338_3286544_+\|PDZ-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	2.25157e-96
NZ_CP015436.1\|WP_044743899.1\|3280414_3281023_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|188353	TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	1.67707e-81
NZ_CP015436.1\|WP_052660998.1\|3266563_3267427_+\|DUF4097-domain-containing-protein	gnl\|CDD\|372574	pfam13349, DUF4097, Putative adhesin. This has a putative all-beta structure with a twenty-residue repeat with a highly conserved repeating GD, gly-asp, motif. It may form part of a bacterial adhesin.	8.89831e-37
NZ_CP015436.1\|WP_044744710.1\|3273457_3273919_-\|DUF2269-domain-containing-protein	gnl\|CDD\|370783	pfam10027, DUF2269, Predicted integral membrane protein (DUF2269). Members of this family of bacterial hypothetical integral membrane proteins have no known function.	3.19466e-24
NZ_CP015436.1\|WP_044743908.1\|3282908_3283277_-\|glyoxalase	gnl\|CDD\|319909	cd07245, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	2.89855e-31
NZ_CP015436.1\|WP_044744711.1\|3271458_3273192_+\|M48-family-metalloprotease	gnl\|CDD\|320688	cd07329, M56_like, Peptidase M56-like, integral membrane metallopeptidase in bacteria. This family contains peptidase M56, which includes zinc metalloprotease domain in MecR1 as well as BlaR1. MecR1 is a transmembrane beta-lactam sensor/signal transducer protein that regulates the expression of an altered penicillin-binding protein PBP2a, which resists inactivation by beta-lactam antibiotics, in methicillin-resistant Staphylococcus aureus (MRSA). BlaR1 regulates the inducible expression of a class A beta-lactamase that hydrolytically destroys certain beta-lactam antibiotics in MRSA. Both, MecR1 and BlaR1, are transmembrane proteins that consist of four transmembrane helices, a cytoplasmic zinc protease domain, and the soluble C-terminal extracellular sensor domain, and are highly similar in sequence and function. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription. All members contain the zinc metalloprotease motif (HEXXH). Homologs of this peptidase domain are also found in a number of other bacterial genome sequences, most of which are as yet uncharacterized.	1.08929e-29
NZ_CP015436.1\|WP_044744709.1\|3273928_3274525_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.22553e-14
NZ_CP015436.1\|WP_044743894.1\|3287195_3288608_+\|amino-acid-permease	gnl\|CDD\|223903	COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism].	0
NZ_CP015436.1\|WP_044746208.1\|3261021_3261603_+\|class-D-sortase	gnl\|CDD\|320677	cd05828, Sortase_D_1, Sortase domain found in subfamily 1 of the class D family of sortases. Class D sortases are cysteine transpeptidases distributed in Gram-positive bacteria (mainly present in Firmicutes). The prototypical subfamily 1 of class D sortase from Bacillus anthracis (named Ba-SrtC) covalently attaches proteins bearing a noncanonical LPNTA sorting signal, such as the BasH and BasI proteins, to the peptidoglycan of the cell wall that facilitate sporulation. BasH is exclusively anchored to the forespore cell wall envelope, while BasI is attached to the diaminopimelic acid moiety of the peptidoglycan of predivisional cells. Ba-SrtC lacks the N-terminal signal peptide and membrane anchor. The family also includes many class D sortase homologs from Gram-negative bacteria, but the functions of these enzymes are unknown.	3.03654e-56
NZ_CP015436.1\|WP_044746207.1\|3262254_3262788_+\|dihydrofolate-reductase	gnl\|CDD\|223340	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].	4.8351e-33
NZ_CP015436.1\|WP_044743900.1\|3278444_3280418_+\|hypothetical-protein	gnl\|CDD\|273736	TIGR01654, unnamed_protein_product, bacteriocin-associated integral membrane (putative immunity) protein. This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear. [Cellular processes, Toxin production and resistance].	7.60316e-12
NZ_CP015436.1\|WP_044743907.1\|3288700_3289786_+\|nitric-oxide-synthase-oxygenase	gnl\|CDD\|376957	pfam02898, NO_synthase, Nitric oxide synthase, oxygenase domain.	0
NZ_CP015436.1\|WP_156487575.1\|3284166_3284847_+\|hypothetical-protein	gnl\|CDD\|368217	pfam04977, DivIC, Septum formation initiator. DivIC from B. subtilis is necessary for both vegetative and sporulation septum formation. These proteins are mainly composed of an amino terminal coiled-coil.	0.00588643
NZ_CP015436.1\|WP_044744712.1\|3270422_3271103_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213235	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter. The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.	1.06893e-68

>NZ_CP015436.1|WP_044744709.1|3273928_3274525_-|TetR/AcrR-family-transcriptional-regulator
MKREQKREQTKRLLLDAVKELIYEKGCTNTTLHDIMERSGLSKGAIFHYVKSKDELFSWVLKERLDKINERFFHQASQKASFEEPLYEITSRLSDLENPQDPGNQVLMYLLGKSDQPDIKKILQQYYEQAIHMSKSWIIAGQEAGVISQSIDADKTAELFTLISFGLRMRSVIDSNGYFFNQDFAELISERLQSKAER
>NZ_CP015436.1|WP_044744710.1|3273457_3273919_-|DUF2269-domain-containing-protein
MKPLLFVHIVGVVLFLGNISVTAFWKMRADQTRHRDFIHRTAKNVMLADFVFTIPGLLLIIISGVWMAVQAGYLVSGFNWLTLSLILFALTGILWAGVLLPLQRKMIHLSAPTAENEFNIESYRQASRHWMIFGTLATLLPVLILYLMISKGV
>NZ_CP015436.1|WP_044744711.1|3271458_3273192_+|M48-family-metalloprotease
MPDLTISILTAVIGFFLSFLVDFFKKWRSSVYVGIFAAIFGIGWIVYVFLEQGFLEATIIFSILLFSFFSFPVPERSGAQSQEIIGKLKKQGSREIVLSKNKERILLDFLFAGLFMGIAVLYFLFGPNSPITLVLLYSFVSLVAGLTKRIRLFRSLRFFYAEQEEALYAISFIETKKYPLKELSEASVQTRPDVLQLFPLFSLFSPHTDYTTSVGKTWKLSFSGEKIYLTPDPSESMDFVLREERKKLEEIEVKPFYHQSNWKRLLGKGYFAATVKGVGAYAALLTLFTFMGISPLVTAMVILLFWIFNLWISDRVLKMALDMKEISDPQLLPIIEKVFSRAGLSHVTIYVTESVEYNGLAAGANIGRSLVALTSETLKLPLEAIEGILAHEAIHVKKRDVLTGQLLRFVLIGWIVIGIFFIHETYPNLLKNHQILVFFVLWILIFLLPAFQSLITQWMEVRADHLGATLLDGGNVQMAKSLTILSEHQDQASEKAIGYHVVPEEEQEAEEKDERLSSLERDSCFFRFLEFQFMSHPPMYWRVHSLRTTETGWNIGKIKLWWNSRFQESLPNWKKNL
>NZ_CP015436.1|WP_044744712.1|3270422_3271103_+|ATP-binding-cassette-domain-containing-protein
MNSHNDSAVKIVNLSKEIKGHKILKDIHLEVSRGKICGIVGRNGSGKTMLFKVIAGLIRPTSGMVEIFGDPITSGKFPKNIGLLLDKNGLLPHYSGLENLKLLASINQIISLEEIKRTLEIVGLDPEDKRPTKYYSLGMKQRLGIAQAIMEKPSLLILDEPMNGLDEDGVADIRNLIKNLKTQNVTILLSSHNSEDINLLCDEVYKMDKGCLSALNNRKSEFTPHT
>NZ_CP015436.1|WP_044744713.1|3269613_3270411_+|hypothetical-protein
MKYLRLLRYFLRTLLYKRNLIIILLTFVVFHFVSFNFYNWQNAGPASLLITFYYGPAYFNFDLLRWLLHQTPIYVLCGNFLNKQLNENNLWILPRAGQFSLWLNGMISANFIFIVIYYSIGYSISMLLSYLINGGKSMSASLDDIPLLNTYTPLKLMLFQFVLLILLTFFVVLMSHVVSILTGNSIAGFSISVMFIFISVGLLQSSPYVNKWLPFSQGVLAARNVEVSPFAWSLSYYFFVIFMIMILFHYICCKRMDSLLHKNTL
>NZ_CP015436.1|WP_044744715.1|3268074_3268839_+|ABC-transporter-permease
MGNGYFVSELKRAFFSRNTLISQLLIFACIFIGSFEFIFHPYPGVNAIYLFMYSHSEGTSAILSLLFPVLVSLPFAASYVTDVRTGFIHYISYRMSRKKYLLIRLLVNGLVSGYVIASSLLVSFILFLLIKKFDVSVVDTLNIIVLRGVYEYSPVLFVLIMILNSFVCGVVFSTLALGVSTFIHNQYLTIVFPFAFYIFSGTLLFQINKFLNSAMLFDLEYDPDLKISYVALYDLILLIIGVALFFIGAAKHAE
>NZ_CP015436.1|WP_052660998.1|3266563_3267427_+|DUF4097-domain-containing-protein
MEKKIPVLLGLIGLISLSLIFWNPVDFSWWPFGKPKNQSVTSEGIDMIEMDISGVSTTIIPKHREDIKADLDGKGKLTVKRQGDKVSISVERKRFGWPFHNKAKLNLYIPEDYDRNMVINLGSGNLSFSGHSKNKPMKLDKLLFDVSSGNVKLKNISVQRFEHDSSSGNADIDSLTAESGTFDIRSGNLKVRHYSGAIEADLSSGNVSMQMDELTGAVDIEVSSGGVDLHLPKSADFTLNGKTSSGNITCDFPLTKKKIEHKSIKGVHGSGEHPIDLNVSSGHINIY
>NZ_CP015436.1|WP_044746206.1|3262916_3263204_-|hypothetical-protein
MVEALLNQILEKLVELQSEIDQMKTKLATKEDLAAVATKGDLISIQQAILETNRIVKNIELNQERHERILDVLSKRSIEHEARYQRLTASAVKEN
>NZ_CP015436.1|WP_044746207.1|3262254_3262788_+|dihydrofolate-reductase
MEKKRKLVLFISTSLDGYIATKDESLDWLFQVEGEGDNGYSEFYETVDTILFGKRTYDWVLKQGIEKLPYENKACYVFTRSPLEDQEDVKFVNEDAVHFTNKLKNQEGRNIWLVGGGELLHSFIKNQLVDEFIMKVAPILLGTGIPLFREGDYQLNLSLKGVRNFNQFVELHYEVKK
>NZ_CP015436.1|WP_044746208.1|3261021_3261603_+|class-D-sortase
MRKRLAAIFIVIGLSIIFVSMQQILETKEATQQALQTAEQIVDEKKGEGGKDFRVSREQFSPKGHDVIGILYIPKIDGTLPIVEGTEEEMLRKGVGHHVSTAFPGDHEQILLSGHRDTVFRKFGDLEVGDRFVVKMPYGTFEYEMKKAEIVEAHDTSVIGPKGEEVLTLSTCYPFHYVGPAPERYVIYAYPVD
>NZ_CP015436.1|WP_044743901.1|3277479_3277818_+|hypothetical-protein
MKKSLISASLALDLLASSTSAFAATYEYSSKGRNFDKSWTAYNSGTNWVIEYGFNTDFINEDFTTHTKHSTTSHIAKVRNANGTFSDQDSAGNWAGIEVTHSGSTVYYSITY
>NZ_CP015436.1|WP_044743900.1|3278444_3280418_+|hypothetical-protein
MKAIKYIISFCIIFVGMLIIGESHIFYLDNFYTRFDHTTMYLQSDTTDEEMVQDILRSAERHKVDVFTFIRSPRSTFLTEFDIYGTSGVERHLNEQVQLSEREYMSLFLGSLRFTFHQLEDIPTMENVHDFYVIGRDKQVYEFKMDLINKYAGNHPKDGYVSKESRNTIMSIWLLITSIILLLSYYDVILQKKENLIRISLGERISKIVWRNIVLDSFVLISLFVIVVYVLSKYTYVFFRLDISLIFFSLLLLLNAFLYVNLYFFNVKEVFSNVKGSKKLLSLNYGLKLVTAVITIFVLSSNIMLISESYRLYKQKSFFKDYADYYYTRLEYKPVENSDVAFDVGGNESTMVQVTFYKEFFDKYNATLLASTSGLFNGQGILANKNALDYLSGEIKELRNQPLTKEIYVLLPKKWKGDARIIDEINSAILFYIGDQFTDDYDLIYYTGNKEIISIDENYTYGSKLVKDPIIIYDNRAADALEFPIENQSPITYVHEIMYKIPSEQEFNRFVEAHDLKGQIVAKTNVFENYKNKWVMAKRVLYMNSIFSLLVLLLEWIIISSIIKLEYEVNAIELSIKKVLGHSIFEKNRKIVLMTAVTTLLSIISAVWVAYALGLSDVYYLVVGGVVIIVLELLVIVFYIWKIENAKISKILKGGNI
>NZ_CP015436.1|WP_044743899.1|3280414_3281023_+|ATP-binding-cassette-domain-containing-protein
MIEIRNLTKKFDEKIVFSNFNLKIEDGEFVIISGSSGCGKTTLLNMIGAIEKIDHGDIIVDGIDIKNKRNHLHYFRTKIGFLFQNFALVDNKTVKENLKMIRKDCRTDLSIEEVLRKVGLEEKINKKVYTLSGGEQQRVALARLMLKKCDIILADEPTGSLDKKNAEAVLDILNQFNEQGKTIILVTHDEEIKKRGNRVVNL
>NZ_CP015436.1|WP_044743898.1|3281019_3281469_+|hypothetical-protein
MTKLTGKKILLLITLIFVIWNLSWFLITTIKYNNFVKDIPKNEWGLHFIKKEDGYIYSVKKPNYLRFTGNLVVANNEKGETLIIWPLIFGGYEYGFRLQKDGVAYEIYVDENMEPINKDDTVAAQKVEEYKVELEELFSKANEMWELKE
>NZ_CP015436.1|WP_044743908.1|3282908_3283277_-|glyoxalase
MRFTFLEIDHVQVAAPKGCEEKAREFYGELLGMQEIPKPKNLQKRGGVWFQCGNHQLHIGVQETFQPAVKAHPAFHVKNLAKLREHLMAKGIEIKEEEPLEGADRFYVSDPFGNRLEFLEWF
>NZ_CP015436.1|WP_156487527.1|3283640_3283784_+|hypothetical-protein
MQKYLIFSVVFIAVFTMLQLVSGLFLTLLYTPTRIIVGESRYTAVSR
>NZ_CP015436.1|WP_156487575.1|3284166_3284847_+|hypothetical-protein
MLLTAAFAFLFSGCTSSHTDYEGQIRDLKQQIQKQTQTIDDLKQQNEELTKKAAASDDRVEGNLLQTALAVAQALKEKNMEQLSLYVDSEKGVRFSPYGYVNVKTDLVFTQKQLPSLMESRQTYQFGEFDGSGEPIKMTFGQYFDRFVYDVDFASPQLIGNNVIVGKGNTLQNIQEVYPNSAFVEFHFTGFDKQYDGMDWRSLRLVFEQRSGVWRLVGIVHDQWTI
>NZ_CP015436.1|WP_044743895.1|3285338_3286544_+|PDZ-domain-containing-protein
MNMTEYEYTNRPVKKRSFVPFLAASIIGAVIGSGVTLYMAPTLGIQQHADKKETTSQQEAVKSSALPLEPTASTSNSNMVQAIENVADAVVGVINIQQQADIFSGASAEQDTGTGSGVIFKKAGDVAYIVTNNHVVEGANKVEVSLPSGERVKATIVGTDPLSDLAVLKINGKNVKKVASFGDSSTLRVGEQVAAIGNPLGLDLSRTVTEGIVSGKRTISVSTSEGEWELNVIQTDAAINPGNSGGALINSAGQVVGINSLKIAQEGIEGLGFALPSQYVQPVIEQLMEYGKVKRPYLGVNLRDLSEIPAETRFEQLGLPENETNGVVVTAVLPSSPAAEAGIQAKDVIVAINGTKVNNVSELRKYLYTKTKVGEKIQLQILRDGKSKTILLQLKERQEQQ
>NZ_CP015436.1|WP_044743894.1|3287195_3288608_+|amino-acid-permease
MQTTHGLKRELKSRHLFMIALGGVIGTGLFLGSGYTIHEAGPGGAIVAYLFGGFVMYLTMLCLGELAVSLPDAGSYQTYATKFISPSAGYVIGWLSWLNWSVTVGLELLTVSILMKRWFPDVPSWIWCVIFAVVLFSINALSSRSFAEVEFWFSSIKVLTIIAFILLGGAAMFGLLEMKGGQAAPLFSNFTDHGGLFPNGLAAILVTMIGVNFSFQGTELVGVAAGESENPEKTVPKAINNTVWRILLFFVLAIFVLAGLFPWEKAGLVESPFVVVFDNIGIPYAADIVNFVIITAVLSVANSGLYATSRVLWSMSRQGMVSPIFSKLSKNGVPINALIASMLIGCLSLLCGIFAEDTVYVWLLSIAGFGAVTVWASIALSNYLARRAFLKQGGNVADLKYRTPLYPIVPLLAFSLNVVVIISLAFIPDQRLALYCGIPFMVACYIYYHLVAKHRTAKLQSSVQVNMEKM
>NZ_CP015436.1|WP_044743907.1|3288700_3289786_+|nitric-oxide-synthase-oxygenase
MLRNQEQLWNEAVQFIRLCYQELGKSEETIRQRLQQIRDEMGQTGTYSHTYEELEHGAKMAWRNSNRCIGRLFWQTLQVIDARHAETEEDVAAHLLQHIEFATNNGKIRPTITVFKPDGAVRIWNHQLIRYAGYETKDGIIGDSASLTLTKACQQLGWEGERTHFDILPLVIQVSGKQPKWFEIPKELVLEVPLEHPSFSWFRDLQLKWYAVPIISDMCLEIGGIRYMAAPFNGWYMETEIGARNLADDYRYNMLPKIASCMGLDMSTNATLWKDKALIELNMAVLYSYKKAGVSMVDHHTAAQQFKLFEQKEQEACRHVTGDWTWLIPPVSPATTHIFHKNYDNTVVVPNFFYQSRPYES

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Crispr_ID: NZ_CP015436_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015436_13

3401205-3401307

Orphan

Consensus_repeat	Method
GTAAGACAACAAAACGCTCAAGCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015436_13

>merge|NZ_CP015436|13|3401205-3401307|CRISPRCasFinder
GTAAGACAACAAAACGCTCAAGCTGGTGCGGCAGGACAATTTGGCACAGAATTTGCTGCTGAAACAGATGTCCAAGAAGTAAAACAACAAAACGCTCAAGCTG

>NZ_CP015436|13|13|3401205-3401307|CRISPRCasFinder
GTAAGACAACAAAACGCTCAAGCTG	GTGCGGCAGGACAATTTGGCACAGAATTTGCTGCTGAAACAGATGTCCAAGAA
GTAAAACAACAAAACGCTCAAGCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015436.1\|WP_044741744.1\|3396066_3396384_+\|YfhH-family-protein	unknown	unknown	gnl\|CDD\|378063
NZ_CP015436.1\|WP_044741738.1\|3402129_3402666_+\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|184219
NZ_CP015436.1\|WP_080860116.1\|3396423_3396585_-\|YpzG-family-protein	unknown	unknown	gnl\|CDD\|372924
NZ_CP015436.1\|WP_044741777.1\|3397005_3397275_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379438
NZ_CP015436.1\|WP_044741740.1\|3400156_3400906_+\|enoyl-[acyl-carrier-protein]-reductase-FabL	unknown	unknown	gnl\|CDD\|236145
NZ_CP015436.1\|WP_044741742.1\|3397505_3398486_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
NZ_CP015436.1\|WP_044741733.1\|3407958_3408858_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP015436.1\|WP_044741778.1\|3395216_3395900_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223377
NZ_CP015436.1\|WP_044741737.1\|3403246_3404272_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP015436.1\|WP_044741732.1\|3409371_3409932_-\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|377417
NZ_CP015436.1\|WP_044741739.1\|3401647_3401911_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372951
NZ_CP015436.1\|WP_044741735.1\|3405262_3406867_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173858
NZ_CP015436.1\|WP_044741736.1\|3404237_3405206_+\|dipeptide-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236898
NZ_CP015436.1\|WP_044741741.1\|3399861_3400083_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044741774.1\|3412387_3412894_+\|DUF2243-domain-containing-protein	unknown	unknown	gnl\|CDD\|370775
NZ_CP015436.1\|WP_066329611.1\|3397289_3397478_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015436.1\|WP_044741734.1\|3406931_3407936_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_CP015436.1\|WP_044741743.1\|3396728_3396884_-\|small,-acid-soluble-spore-protein-K	unknown	unknown	gnl\|CDD\|285399
NZ_CP015436.1\|WP_044741730.1\|3410908_3411976_-\|aromatic-acid-exporter-family-protein	unknown	unknown	gnl\|CDD\|226614
NZ_CP015436.1\|WP_044741776.1\|3398636_3399728_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115

Protein	Function_ID	Function_description	E-value
NZ_CP015436.1\|WP_044741744.1\|3396066_3396384_+\|YfhH-family-protein	gnl\|CDD\|378063	pfam08838, DUF1811, Protein of unknown function (DUF1811). This is a bacterial family of uncharacterized proteins. Some of the proteins are annotated as being transcriptional regulators. The structure of one of the proteins in this family has revealed a beta-barrel like structure with helix-turn-helix like motif.	1.98568e-60
NZ_CP015436.1\|WP_044741738.1\|3402129_3402666_+\|DUF402-domain-containing-protein	gnl\|CDD\|184219	PRK13662, PRK13662, hypothetical protein; Provisional.	6.80564e-130
NZ_CP015436.1\|WP_080860116.1\|3396423_3396585_-\|YpzG-family-protein	gnl\|CDD\|372924	pfam14139, YpzG, YpzG-like protein. The YpzG-like protein family includes the B. subtilis YpzG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 50 amino acids in length. There is a conserved QVNG sequence motif.	1.35621e-13
NZ_CP015436.1\|WP_044741777.1\|3397005_3397275_+\|hypothetical-protein	gnl\|CDD\|379438	pfam14043, WVELL, WVELL protein. This family includes the B. subtilis YfjH protein, which is functionally uncharacterized. This is not a homolog of E. coli YfjH, a synonym for IscX, which belongs to pfam04384. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length and contain a highly conserved WVELL motif.	4.20338e-40
NZ_CP015436.1\|WP_044741740.1\|3400156_3400906_+\|enoyl-[acyl-carrier-protein]-reductase-FabL	gnl\|CDD\|236145	PRK08063, PRK08063, enoyl-[acyl-carrier-protein] reductase FabL.	1.14244e-162
NZ_CP015436.1\|WP_044741742.1\|3397505_3398486_-\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	1.21148e-34
NZ_CP015436.1\|WP_044741733.1\|3407958_3408858_+\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	5.96343e-115
NZ_CP015436.1\|WP_044741778.1\|3395216_3395900_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223377	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only].	1.22958e-59
NZ_CP015436.1\|WP_044741737.1\|3403246_3404272_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	0
NZ_CP015436.1\|WP_044741732.1\|3409371_3409932_-\|VanZ-family-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	6.5268e-09
NZ_CP015436.1\|WP_044741739.1\|3401647_3401911_+\|hypothetical-protein	gnl\|CDD\|372951	pfam14182, YgaB, YgaB-like protein. The YgaB-like protein family includes the B. subtilis YgaB protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.	2.45158e-17
NZ_CP015436.1\|WP_044741735.1\|3405262_3406867_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173858	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of an ATP-binding cassette (ABC)-type dipeptide import system. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP015436.1\|WP_044741736.1\|3404237_3405206_+\|dipeptide-ABC-transporter-ATP-binding-protein	gnl\|CDD\|236898	PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional.	2.15994e-163
NZ_CP015436.1\|WP_044741774.1\|3412387_3412894_+\|DUF2243-domain-containing-protein	gnl\|CDD\|370775	pfam10002, DUF2243, Predicted membrane protein (DUF2243). This domain, found in various hypothetical bacterial proteins, has no known function.	8.31139e-57
NZ_CP015436.1\|WP_044741734.1\|3406931_3407936_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.09211e-137
NZ_CP015436.1\|WP_044741743.1\|3396728_3396884_-\|small,-acid-soluble-spore-protein-K	gnl\|CDD\|285399	pfam08176, SspK, Small acid-soluble spore protein K family. This family consists of the small acid-soluble spore proteins (SASP) belonging to the K type (sspK). The sspK are unique to the spores of Bacillus subtilis and are expressed only in the forespore compartment of sporulating cells of this organism. The sspK gene is monocistronic and transcription is primarily by the RNA polymerase with the forespore-specific sigma factor, sigma-G. Mutation deleting sspK results in loss of SspK from the spore but had no discernible effect on sporulation, spore properties or spore germination.	5.7059e-15
NZ_CP015436.1\|WP_044741730.1\|3410908_3411976_-\|aromatic-acid-exporter-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	1.14799e-71
NZ_CP015436.1\|WP_044741776.1\|3398636_3399728_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	8.84587e-141

>NZ_CP015436.1|WP_044741740.1|3400156_3400906_+|enoyl-[acyl-carrier-protein]-reductase-FabL
MSKKVAVVTGSSRGIGKAIALRLAQEGYDIVVNYARSKEAALQTAKEIEALGQHALVVKANVGKVEKIQEMFAQIDEAFGRVDVLINNAASGVLRAAMELEESHWDWTMHINSKALLFCAQEAAKRMEKVGGGKIVSISSLGSIRYLENYTAVGVSKAAVESLTRYLAVELAAKNISVNAVSGGAIDTDALKHFPNRAELLADAVAKTPAGRMVEPKDIVNAVLFLLSDQAEMIRGQTIIVDGGRSLLM
>NZ_CP015436.1|WP_044741741.1|3399861_3400083_-|hypothetical-protein
MYVGRDMTELSMIPKSKWKDSELAFFHHSFQQIAPYLNAEGQAIHREIIEEIEARGVKRTEATYTKGTRPSYD
>NZ_CP015436.1|WP_044741776.1|3398636_3399728_+|A/G-specific-adenine-glycosylase
MQPFIKEFQIEAFQRDLIQWFEREQRDLPWRKDSDPYKIWVSEVMLQQTRVDTVIPYFHQFMEQFPTLESLATADEEKVLKAWEGLGYYSRVRNLHAAVKEVKERYGGKVPDSAEEFSKLKGVGPYTTGAVLSIAYGLPEPAVDGNVMRVLSRIFLVEEDIAKVKTRKIFENIVRMIISHENPSYFNQALMELGALICIPGKPACLLCPVQAHCRAFAEGRQEELPVKTKKAKVKEVSIAAAVVMDKQGRILIHKRGQEGLLANLWEFPNCEVGKEQPQKELTAFLKKEYGACVELSFPFAALEHVFSHLVWNIVVYCGTIMGDITENDRLKLVSEQEIQQHAFPVSHQRIWKEYKQFKQEGG
>NZ_CP015436.1|WP_044741742.1|3397505_3398486_-|metal-dependent-hydrolase
MDTGTHIVMGVALGSIATLDPVIAHDPALAQAVLIGTLIGSQAPDLDTVLKLKNNAKYIRNHRGITHSIPALLIWPLLITGVIAHFYPISNMFHLWIWISIAVFFHVFVDIFNAYGTQALRPFTKKWVALGVINTFDPAIFGMHLAGIGLLFLGAHPGYTFLAIYVLLVGYYIIRFRQQAMIKKTVMETIPHVEQIITVPTLRFREWHLAITAKDHFFVGRAKNGAIHILDTFERCPIPSHPAIEAAKKDENLAAFLSFSPVYRWEVNEYSDHYEVRFTDLRYRNKGYYPFVAVVQLDRHFHVVSSYTGWIFSEGKLRKKLELIPG
>NZ_CP015436.1|WP_066329611.1|3397289_3397478_+|hypothetical-protein
MSLSSCVADLVCPLKTFWFDLRRQAAFLACQAFSSRSDVQPAQDNEDVKMIVDKAHLTLSTT
>NZ_CP015436.1|WP_044741777.1|3397005_3397275_+|hypothetical-protein
MNEYFERLTKELLDQNDALAYAQARTWVELLWEDFEATYARAGYSYKGKELTERVVRQWIRQYGAKLHEFKATNPKYKHLLNRDDYLKH
>NZ_CP015436.1|WP_044741743.1|3396728_3396884_-|small,-acid-soluble-spore-protein-K
MRNKDRNFPNQNHNKLEGEPRAKAEYASKRANGTINTHPQERMSASNHRDE
>NZ_CP015436.1|WP_080860116.1|3396423_3396585_-|YpzG-family-protein
MNRHSRKKFYNNLYSNPFQQPWANPKHAHSQVNGETQQTVDLMILERQTRKQS
>NZ_CP015436.1|WP_044741744.1|3396066_3396384_+|YfhH-family-protein
MMQKRYSEMTEYELKQEIAALTEKARKAEQMGMVNELAVYERKIAMAKAYLLNPEDFQPGDIYEIDGDPGSFFKIRYLNGVFAWGYRLNGDGEEEALPISLLMKA
>NZ_CP015436.1|WP_044741778.1|3395216_3395900_-|SDR-family-NAD(P)-dependent-oxidoreductase
MEAIVITGAGTGLGKQLALKYAKKGYPIILVGRRESPLFAVKQEIEANEGQAFIYTLDIRSYEDVCQVSAQIIQQHKIGCLINNAGIGHFGSLASLTCEQIHEMIETNVCGTIYMTKAFLPYFQTLPKAKIINIISTAGLRGKVNESVYVATKFAVRGFTESLVKELENTPISITAVYMGGMDTPFWEGTDHIQDRSRLLPPEQIAEYIIQNENGQAEMIIESNKLL
>NZ_CP015436.1|WP_044741739.1|3401647_3401911_+|hypothetical-protein
MELFDRLVGEQLKTMEQLLFLQSEIERCQSIEEELIELQNEAKLQSVQEEIQQMKQQLKEIQQTFEKQTEEVIRSYQRHYCHAGEPS
>NZ_CP015436.1|WP_044741738.1|3402129_3402666_+|DUF402-domain-containing-protein
MTTKYPREGEIIQIQSYKHNGSIHRIWKETLVLKGTSNYIIAANDRTVVTESDGRTWITREPAICFFHAKHWFNIIGMIREDGVYYYCNLSSPFVWDQEALKYIDYDLDIKVFPSMTYNLLDEDEYERHRQEMNYPAVIDRILKNNVQKLVSWIQQRKGPFAPDFIDMWYEKFLSYRS
>NZ_CP015436.1|WP_044741737.1|3403246_3404272_+|ABC-transporter-ATP-binding-protein
MREQRVLEVKGLKTSFFTDDGEIPAVDDIDFYINEGEVLGIVGESGCGKSVTSLSIMGLLPKGIGRVVGGEIWLKGENLVNASEKRMKAIRGNEIAMIFQEPMTSLNPLFTIGNQLIEAIRTHTDLTKKEARLRSIEMLKLVGLPRAEDIIDEYPHQLSGGMRQRVMIAMAMACRPAVLIADEPTTALDVTIQAQILKLMKDLNQNFQTAIMMITHDLGVVAEVCQRVIVMYSGKIVEEGDVHTIFKQPKHPYTIGLIQSVPDIREKKERLYSIPGNVPKPGTIKQGCRFAARCEHAFARCFQETPQLYSIDQAGHRVRCFLHQREEETKGDRAVVAGERS
>NZ_CP015436.1|WP_044741736.1|3404237_3405206_+|dipeptide-ABC-transporter-ATP-binding-protein
MTEPLLQVKDLKKYFPITGGVFSKKIGEVKAVDDLTFTVYKGETLGIVGESGCGKSTTGRMLLRLIEPTEGSIVFENQEITNLSKQELRKVRRDMQMVFQDPFASLNPRHTVEKILEEPLIVHGIGSKQERKKKVYEMLEVVGLGSYHAKRYPHQFSGGQRQRIGIARALMTRPKLIIADEPVSALDVSIQAQVLNLLEDLQKEFGLTYIFIAHDLGVVRHISDRVGVMYLGRMVELADSDVLYESPKHPYTKALLSAVPIPDPEYQQERQLLTGDLPSPSNPPKGCAFHTRCSACMDICKTTRPTLQEVEKGHYVACHLYQ
>NZ_CP015436.1|WP_044741735.1|3405262_3406867_+|ABC-transporter-substrate-binding-protein
MKKKSLMTLLAVMLALSVALVGCGKSEKTSSGGKGGTSSQSTLVYGRGGDSVALDPATVTDGESLKVTKNIFDTLLDYNEGDTSVQPGLAEKWDISPDGLTYTFTLRQGVKFHDGTDFNAEAVVFNFERWANGNADQFPYYGSMFGGYKNDESHVIKEVKALDDHTVQFVLKRPQAPFLKNLAMPPFAIASPAAIEKYSDKFAENPVGTGPFVFKEWKRNERIVLEKNKDYWMKGYPKLNQLIFVSIPDNSARLNALLKGEIDLMEDVNPSDLKQIEENKDFQVFKRPSMNVGYVGLTVTRGPLKNKLVRQALNYAVDKQALIDAFYAGQAEPAKNPMPPSIPGYNDAIQDYPFDLEKAKQLLAQAGYPNGFEMELWAMPVPRPYMPDAKKIAEALQANFAKIGVKAKIVTYEWATYLDKAAKGEADSFLLGWTGDNGDADNFLYALLDKDSIGSNNYTYYSNEELHKILVEAQTVSDENKRNELYKKAQEIIKEDAPWIPLVHSTPLLAGKTTIKNFNPHPTGSDKFTKVEIQ
>NZ_CP015436.1|WP_044741734.1|3406931_3407936_+|ABC-transporter-permease
MFAYTLRRILMVIPVLLGMSLVVFFMIRAIPGNPAQVILGQKATKEAVEALTHKLGLDQPWYVQYVKYLGGLLKGDLGESIRTGTSVSQEIWPYLAATLELSIAAMLIAIVIGVNAGIISAWFQNSWFDYTAMILALVGVSMPIFWLGLMEQWVFAIHLDWLPTSGREEVRNPIEPITHLYLIDTLLQGNTEQFMQVLQHLILPSIALATIPMAIIARITRSSMLEVMKSDYIRTARAKGLSMFWVVYKHSLKNAIIPVLTVIGLQTGLLLGGAILTETIFSWPGIGRYIYEAIGYRDYPVIQSGILVVATIFIFINLVVDLLYAAVDPRIKYN
>NZ_CP015436.1|WP_044741733.1|3407958_3408858_+|ABC-transporter-permease
MAELARNQAPIPVKPDKEESVSLWKEGWRSFKKNKIALVGAAIVLFFILLAVFAPLLAPYEISEQNLSERLQAPSKEHLFGTDDFGRDILSRVIYGARISLWVGFFSVLGSVVVGSLLGIVAGYYGKWIDAIISRIFDIMLAFPSILLAIGIVAVLGPSLQNALIAIAVINIPNFGRLIRSRVLSIKQEEYIVAARAIGMSDARILFHHILPNSMAPIIVQGTLAIATAIIEAAALGFLGLGAQPPNPEWGTMLASSKDFLTQAPWTMVFPGLAIMLTVLGFNLMGDGLRDALDPRMKS
>NZ_CP015436.1|WP_044741732.1|3409371_3409932_-|VanZ-family-protein
MRLLMDILLFSGPILLFYLFIRLLFIRKSKVRMMKEISRITFLAYISALIFIVWIDQSTPVNYLLYNFVPFKTIFTYIEDLISGTNPFIAFKNILGNVLLTLPIGFYCVIFTRGLSKAKLIGLSIVVPLIIECGQYLLFLTKLGGLRSVDIDDLILNSIGIITGYYFTMYLLQKSHKKQQQVNNYN
>NZ_CP015436.1|WP_044741730.1|3410908_3411976_-|aromatic-acid-exporter-family-protein
MKLGARIFKTGIAVTLALVLASMLKLPAPSFAGISAVFAMQPTIYRSYLSLIEQLQANVIGAVFAIVFVLLFGHNPFIIGLTAILVIALCLRLRLESTISVALVTVIAVMEYTETNFIQFALIRFSTIMLGILAAFIVNCIFLPPKYEKKLYDSIVENTETILKWIRINTRRASEHHVLKEDIEKLKENMMKLNQLYLMYKEERIYFAKKRYQKSRKLVLYRQMITVTNRALDALRTLHRFENELSQMPPEFQQTLRSQLDCLLHYHEQILLKLVGKVKFQAESKIADEAYDEKKRLVEAFYQYSKHGNEYHLLSLVGTIITYGEQLEHLDKLVESFQQYHKDDEEPLHLSGQQG
>NZ_CP015436.1|WP_044741774.1|3412387_3412894_+|DUF2243-domain-containing-protein
MNLKNPSHDATSSPYLARNLWSGFLFGLGLVAFIDEAVFHQLLHWHHFYDKSTTSIGLVSDGLFHAFSWFATVGSLFMLADLRRRNALRLTRWWGGVLLGAGIFQLYDGTIQHKLMRLHQIRYNVNLLPYDLTWNIIAIGMIIAGAILIIRARNDSQPPRGTHSHEHQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP015436_5	5.1\|1364472\|38\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	1364472-1364509	38	NZ_CP015437.1	26850-26887	0	1.0
NZ_CP015436_9	9.3\|1426931\|36\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	1426931-1426966	36	NZ_CP015437.1	28990-29025	1	0.972

1. spacer 5.1|1364472|38|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to position: 26850-26887, mismatch: 0, identity: 1.0

ggtgtgtcccacctctcgcatgttgtcatcaaagtacc	CRISPR spacer
ggtgtgtcccacctctcgcatgttgtcatcaaagtacc	Protospacer
**************************************

2. spacer 9.3|1426931|36|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to position: 28990-29025, mismatch: 1, identity: 0.972

tatctagcggcgacgggattatgagagtggagaaaa	CRISPR spacer
tatctagcggcggcgggattatgagagtggagaaaa	Protospacer
************.***********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP015436_3	3.26\|1331904\|36\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331904-1331939	36	NC_008376	Geobacillus phage GBSV1, complete genome	20183-20218	0	1.0
NZ_CP015436_3	3.26\|1331904\|36\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331904-1331939	36	NC_009737	Bacillus virus 1, complete genome	20507-20542	0	1.0
NZ_CP015436_5	5.1\|1364472\|38\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	1364472-1364509	38	NZ_CP015437	Anoxybacillus sp. B7M1 plasmid unnamed, complete sequence	26850-26887	0	1.0
NZ_CP015436_9	9.3\|1426931\|36\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	1426931-1426966	36	NZ_CP015437	Anoxybacillus sp. B7M1 plasmid unnamed, complete sequence	28990-29025	1	0.972
NZ_CP015436_10	10.2\|3134028\|36\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	3134028-3134063	36	AB823818	Phage phi OH2 DNA, complete genome	17649-17684	1	0.972
NZ_CP015436_3	3.18\|1331377\|35\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331377-1331411	35	MK448791	Streptococcus phage Javan517, complete genome	3707-3741	2	0.943
NZ_CP015436_3	3.18\|1331377\|35\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331377-1331411	35	NC_004587	Streptococcus prophage 315.4, complete genome	3802-3836	2	0.943
NZ_CP015436_3	3.18\|1331377\|35\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331377-1331411	35	NC_003157	Streptococcus pyogenes strain NIH1 putative methionine sulfoxide reductase gene, complete cds; and integrated temperate phage PhiNIH1.1, complete genome	5072-5106	2	0.943
NZ_CP015436_3	3.18\|1331377\|35\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331377-1331411	35	MK448977	Streptococcus phage Javan530, complete genome	3707-3741	2	0.943
NZ_CP015436_3	3.18\|1331377\|35\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331377-1331411	35	MK448788	Streptococcus phage Javan511, complete genome	3707-3741	2	0.943
NZ_CP015436_3	3.15\|1331178\|38\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331178-1331215	38	NZ_CP015437	Anoxybacillus sp. B7M1 plasmid unnamed, complete sequence	31584-31621	3	0.921
NZ_CP015436_3	3.18\|1331377\|35\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331377-1331411	35	MK448675	Streptococcus phage Javan129, complete genome	4817-4851	4	0.886
NZ_CP015436_3	3.18\|1331377\|35\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331377-1331411	35	MK448858	Streptococcus phage Javan166, complete genome	4544-4578	4	0.886
NZ_CP015436_3	3.18\|1331377\|35\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331377-1331411	35	MK448701	Streptococcus phage Javan197, complete genome	4849-4883	4	0.886
NZ_CP015436_3	3.18\|1331377\|35\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331377-1331411	35	MK449010	Streptococcus phage Javan90, complete genome	4726-4760	4	0.886
NZ_CP015436_3	3.18\|1331377\|35\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331377-1331411	35	MK448775	Streptococcus phage Javan489, complete genome	5143-5177	4	0.886
NZ_CP015436_3	3.18\|1331377\|35\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331377-1331411	35	MK448795	Streptococcus phage Javan527, complete genome	7021-7055	4	0.886
NZ_CP015436_3	3.18\|1331377\|35\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331377-1331411	35	MK448953	Streptococcus phage Javan474, complete genome	4528-4562	4	0.886
NZ_CP015436_3	3.18\|1331377\|35\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331377-1331411	35	MK448944	Streptococcus phage Javan452, complete genome	4925-4959	4	0.886
NZ_CP015436_3	3.18\|1331377\|35\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331377-1331411	35	MK448945	Streptococcus phage Javan454, complete genome	5112-5146	4	0.886
NZ_CP015436_3	3.18\|1331377\|35\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331377-1331411	35	MK448690	Streptococcus phage Javan169, complete genome	4270-4304	4	0.886
NZ_CP015436_3	3.18\|1331377\|35\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331377-1331411	35	MK448869	Streptococcus phage Javan190, complete genome	4849-4883	4	0.886
NZ_CP015436_3	3.18\|1331377\|35\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331377-1331411	35	MK448850	Streptococcus phage Javan132, complete genome	4666-4700	4	0.886
NZ_CP015436_3	3.18\|1331377\|35\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331377-1331411	35	MK448870	Streptococcus phage Javan192, complete genome	4849-4883	4	0.886
NZ_CP015436_3	3.18\|1331377\|35\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331377-1331411	35	MK448950	Streptococcus phage Javan464, complete genome	3341-3375	4	0.886
NZ_CP015436_3	3.18\|1331377\|35\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331377-1331411	35	MK448833	Streptococcus phage Javan87, complete genome	4726-4760	4	0.886
NZ_CP015436_3	3.18\|1331377\|35\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331377-1331411	35	MK448683	Streptococcus phage Javan149, complete genome	5357-5391	4	0.886
NZ_CP015436_9	9.14\|1427664\|35\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	1427664-1427698	35	NC_009552	Geobacillus virus E2, complete genome	20495-20529	5	0.857
NZ_CP015436_3	3.15\|1331178\|38\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331178-1331215	38	NZ_CP016918	Parageobacillus thermoglucosidasius strain TM242 plasmid pNCI002, complete sequence	29915-29952	6	0.842
NZ_CP015436_3	3.15\|1331178\|38\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331178-1331215	38	NZ_CP016624	Parageobacillus thermoglucosidasius strain Wild Type plasmid pNCI002, complete sequence	29915-29952	6	0.842
NZ_CP015436_3	3.18\|1331377\|35\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331377-1331411	35	MK448712	Streptococcus phage Javan237, complete genome	3663-3697	6	0.829
NZ_CP015436_3	3.18\|1331377\|35\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331377-1331411	35	MK448880	Streptococcus phage Javan238, complete genome	3663-3697	6	0.829
NZ_CP015436_12	12.16\|3275896\|38\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	3275896-3275933	38	NC_008376	Geobacillus phage GBSV1, complete genome	7136-7173	6	0.842
NZ_CP015436_12	12.16\|3275896\|38\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	3275896-3275933	38	NC_009737	Bacillus virus 1, complete genome	7133-7170	6	0.842
NZ_CP015436_11	11.24\|3265427\|35\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	3265427-3265461	35	MT741943	Acinetobacter phage Meroveus, complete genome	48147-48181	8	0.771
NZ_CP015436_11	11.24\|3265427\|35\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	3265427-3265461	35	MN732883	Acinetobacter phage Kimel, complete genome	48453-48487	8	0.771
NZ_CP015436_11	11.24\|3265427\|35\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	3265427-3265461	35	NC_049492	Acinetobacter phage vB_AbaP_Kimel, complete genome	48453-48487	8	0.771
NZ_CP015436_11	11.24\|3265427\|35\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	3265427-3265461	35	MT409116	Acinetobacter phage Octan, complete genome	47097-47131	8	0.771
NZ_CP015436_11	11.24\|3265427\|35\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	3265427-3265461	35	NC_049445	Acinetobacter phage AbTZA1, complete genome	167464-167498	8	0.771
NZ_CP015436_11	11.24\|3265427\|35\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	3265427-3265461	35	NC_049494	Acinetobacter phage vB_AbaM_PhT2, complete genome	161220-161254	8	0.771
NZ_CP015436_11	11.31\|3265896\|37\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	3265896-3265932	37	NZ_CP021839	Anoxybacillus flavithermus strain 52-1A plasmid unnamed, complete sequence	16669-16705	8	0.784
NZ_CP015436_12	12.1\|3275096\|34\|NZ_CP015436\|PILER-CR	3275096-3275129	34	NC_048773	Aeromonas phage 4_4572, complete genome	75899-75932	8	0.765
NZ_CP015436_1	1.4\|534054\|38\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	534054-534091	38	NZ_CP014287	Bacillus thuringiensis strain Bt185 plasmid pBT1850042, complete sequence	21068-21105	9	0.763
NZ_CP015436_1	1.4\|534054\|38\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	534054-534091	38	NZ_CP032613	Bacillus thuringiensis strain QZL38 plasmid p.6, complete sequence	41781-41818	9	0.763
NZ_CP015436_11	11.21\|3265229\|35\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	3265229-3265263	35	NZ_CP013345	Sphingopyxis macrogoltabida strain 203N plasmid unnamed1, complete sequence	197976-198010	9	0.743
NZ_CP015436_1	1.4\|534054\|38\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	534054-534091	38	NZ_CP040335	Bacillus cereus strain DLOU-Changhai plasmid unnamed1, complete sequence	878-915	10	0.737
NZ_CP015436_12	12.28\|3276700\|36\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	3276700-3276735	36	NZ_CP050098	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence	311490-311525	10	0.722
NZ_CP015436_1	1.4\|534054\|38\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	534054-534091	38	NZ_CP031072	Bacillus mycoides strain BPN401 plasmid pl395, complete sequence	161848-161885	11	0.711
NZ_CP015436_1	1.4\|534054\|38\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	534054-534091	38	KT967075	Bacillus phage phi4I1, complete genome	40444-40481	11	0.711
NZ_CP015436_1	1.4\|534054\|38\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	534054-534091	38	NC_031055	Bacillus phage PfEFR-5, complete genome	42226-42263	11	0.711
NZ_CP015436_1	1.4\|534054\|38\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	534054-534091	38	MG710484	Bacillus phage BtiUFT6.51-F, complete genome	40449-40486	11	0.711
NZ_CP015436_1	1.4\|534054\|38\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	534054-534091	38	KT725776	Bacillus phage vB_BceS-MY192, partial genome	15480-15517	11	0.711
NZ_CP015436_1	1.4\|534054\|38\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	534054-534091	38	NC_018085	Bacillus phage BtCS33, complete genome	40443-40480	11	0.711
NZ_CP015436_1	1.4\|534054\|38\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	534054-534091	38	NC_048641	Bacillus phage PfEFR-4, complete genome	41629-41666	11	0.711
NZ_CP015436_1	1.4\|534054\|38\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	534054-534091	38	NZ_CP009691	Bacillus mycoides strain ATCC 6462 plasmid pBMX_1, complete sequence	117296-117333	11	0.711
NZ_CP015436_6	6.8\|1382726\|37\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	1382726-1382762	37	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	289483-289519	11	0.703
NZ_CP015436_3	3.22\|1331640\|35\|NZ_CP015436\|CRISPRCasFinder,CRT,PILER-CR	1331640-1331674	35	MG969427	Anoxybacillus phage A403, complete genome	21992-22026	12	0.657
NZ_CP015436_11	11.27\|3265626\|37\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	3265626-3265662	37	NZ_CP034156	Rhodococcus sp. NJ-530 plasmid unnamed4, complete sequence	11982-12018	12	0.676

1. spacer 3.26|1331904|36|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to NC_008376 (Geobacillus phage GBSV1, complete genome) position: , mismatch: 0, identity: 1.0

aacgaagcaggggatcgcgatgatgtggtttgagtt	CRISPR spacer
aacgaagcaggggatcgcgatgatgtggtttgagtt	Protospacer
************************************

2. spacer 3.26|1331904|36|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to NC_009737 (Bacillus virus 1, complete genome) position: , mismatch: 0, identity: 1.0

aacgaagcaggggatcgcgatgatgtggtttgagtt	CRISPR spacer
aacgaagcaggggatcgcgatgatgtggtttgagtt	Protospacer
************************************

3. spacer 5.1|1364472|38|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015437 (Anoxybacillus sp. B7M1 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ggtgtgtcccacctctcgcatgttgtcatcaaagtacc	CRISPR spacer
ggtgtgtcccacctctcgcatgttgtcatcaaagtacc	Protospacer
**************************************

4. spacer 9.3|1426931|36|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015437 (Anoxybacillus sp. B7M1 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.972

tatctagcggcgacgggattatgagagtggagaaaa	CRISPR spacer
tatctagcggcggcgggattatgagagtggagaaaa	Protospacer
************.***********************

5. spacer 10.2|3134028|36|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to AB823818 (Phage phi OH2 DNA, complete genome) position: , mismatch: 1, identity: 0.972

ccaactgtcaggcgtcggttggtattctcgatgacc	CRISPR spacer
ccaactgccaggcgtcggttggtattctcgatgacc	Protospacer
*******.****************************

6. spacer 3.18|1331377|35|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to MK448791 (Streptococcus phage Javan517, complete genome) position: , mismatch: 2, identity: 0.943

gtagctgttagtcaaaaaagactaacagttcaggg	CRISPR spacer
gtagctattagtcaaaaaagactaacagctcaggg	Protospacer
******.*********************.******

7. spacer 3.18|1331377|35|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to NC_004587 (Streptococcus prophage 315.4, complete genome) position: , mismatch: 2, identity: 0.943

gtagctgttagtcaaaaaagactaacagttcaggg	CRISPR spacer
gtagctattagtcaaaaaagactaacagctcaggg	Protospacer
******.*********************.******

8. spacer 3.18|1331377|35|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to NC_003157 (Streptococcus pyogenes strain NIH1 putative methionine sulfoxide reductase gene, complete cds; and integrated temperate phage PhiNIH1.1, complete genome) position: , mismatch: 2, identity: 0.943

gtagctgttagtcaaaaaagactaacagttcaggg	CRISPR spacer
gtagctattagtcaaaaaagactaacagctcaggg	Protospacer
******.*********************.******

9. spacer 3.18|1331377|35|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to MK448977 (Streptococcus phage Javan530, complete genome) position: , mismatch: 2, identity: 0.943

gtagctgttagtcaaaaaagactaacagttcaggg	CRISPR spacer
gtagctattagtcaaaaaagactaacagctcaggg	Protospacer
******.*********************.******

10. spacer 3.18|1331377|35|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to MK448788 (Streptococcus phage Javan511, complete genome) position: , mismatch: 2, identity: 0.943

gtagctgttagtcaaaaaagactaacagttcaggg	CRISPR spacer
gtagctattagtcaaaaaagactaacagctcaggg	Protospacer
******.*********************.******

11. spacer 3.15|1331178|38|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015437 (Anoxybacillus sp. B7M1 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.921

tatcactttttcctggagcgccaaagatgaaagtgaat	CRISPR spacer
tatcactttttcctggagcgctaaagatgaaactgaac	Protospacer
*********************.********** ****.

12. spacer 3.18|1331377|35|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to MK448675 (Streptococcus phage Javan129, complete genome) position: , mismatch: 4, identity: 0.886

gtagctgttagtcaaaaaagactaacagttcaggg	CRISPR spacer
atggctattagtcaaaaaagactaacagctcaggg	Protospacer
.*.***.*********************.******

13. spacer 3.18|1331377|35|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to MK448858 (Streptococcus phage Javan166, complete genome) position: , mismatch: 4, identity: 0.886

gtagctgttagtcaaaaaagactaacagttcaggg	CRISPR spacer
atggctattagtcaaaaaagactaacagctcaggg	Protospacer
.*.***.*********************.******

14. spacer 3.18|1331377|35|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to MK448701 (Streptococcus phage Javan197, complete genome) position: , mismatch: 4, identity: 0.886

gtagctgttagtcaaaaaagactaacagttcaggg	CRISPR spacer
atggctattagtcaaaaaagactaacagctcaggg	Protospacer
.*.***.*********************.******

15. spacer 3.18|1331377|35|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to MK449010 (Streptococcus phage Javan90, complete genome) position: , mismatch: 4, identity: 0.886

gtagctgttagtcaaaaaagactaacagttcaggg	CRISPR spacer
atggctattagtcaaaaaagactaacagctcaggg	Protospacer
.*.***.*********************.******

16. spacer 3.18|1331377|35|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to MK448775 (Streptococcus phage Javan489, complete genome) position: , mismatch: 4, identity: 0.886

gtagctgttagtcaaaaaagactaacagttcaggg	CRISPR spacer
atggctattagtcaaaaaagactaacagctcaggg	Protospacer
.*.***.*********************.******

17. spacer 3.18|1331377|35|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to MK448795 (Streptococcus phage Javan527, complete genome) position: , mismatch: 4, identity: 0.886

gtagctgttagtcaaaaaagactaacagttcaggg	CRISPR spacer
atggctattagtcaaaaaagactaacagctcaggg	Protospacer
.*.***.*********************.******

18. spacer 3.18|1331377|35|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to MK448953 (Streptococcus phage Javan474, complete genome) position: , mismatch: 4, identity: 0.886

gtagctgttagtcaaaaaagactaacagttcaggg	CRISPR spacer
atggctattagtcaaaaaagactaacagctcaggg	Protospacer
.*.***.*********************.******

19. spacer 3.18|1331377|35|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to MK448944 (Streptococcus phage Javan452, complete genome) position: , mismatch: 4, identity: 0.886

gtagctgttagtcaaaaaagactaacagttcaggg	CRISPR spacer
atggctattagtcaaaaaagactaacagctcaggg	Protospacer
.*.***.*********************.******

20. spacer 3.18|1331377|35|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to MK448945 (Streptococcus phage Javan454, complete genome) position: , mismatch: 4, identity: 0.886

gtagctgttagtcaaaaaagactaacagttcaggg	CRISPR spacer
atggctattagtcaaaaaagactaacagctcaggg	Protospacer
.*.***.*********************.******

21. spacer 3.18|1331377|35|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to MK448690 (Streptococcus phage Javan169, complete genome) position: , mismatch: 4, identity: 0.886

gtagctgttagtcaaaaaagactaacagttcaggg	CRISPR spacer
atggctattagtcaaaaaagactaacagctcaggg	Protospacer
.*.***.*********************.******

22. spacer 3.18|1331377|35|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to MK448869 (Streptococcus phage Javan190, complete genome) position: , mismatch: 4, identity: 0.886

gtagctgttagtcaaaaaagactaacagttcaggg	CRISPR spacer
atggctattagtcaaaaaagactaacagctcaggg	Protospacer
.*.***.*********************.******

23. spacer 3.18|1331377|35|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to MK448850 (Streptococcus phage Javan132, complete genome) position: , mismatch: 4, identity: 0.886

gtagctgttagtcaaaaaagactaacagttcaggg	CRISPR spacer
atggctattagtcaaaaaagactaacagctcaggg	Protospacer
.*.***.*********************.******

24. spacer 3.18|1331377|35|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to MK448870 (Streptococcus phage Javan192, complete genome) position: , mismatch: 4, identity: 0.886

gtagctgttagtcaaaaaagactaacagttcaggg	CRISPR spacer
atggctattagtcaaaaaagactaacagctcaggg	Protospacer
.*.***.*********************.******

25. spacer 3.18|1331377|35|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to MK448950 (Streptococcus phage Javan464, complete genome) position: , mismatch: 4, identity: 0.886

gtagctgttagtcaaaaaagactaacagttcaggg	CRISPR spacer
atggctattagtcaaaaaagactaacagctcaggg	Protospacer
.*.***.*********************.******

26. spacer 3.18|1331377|35|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to MK448833 (Streptococcus phage Javan87, complete genome) position: , mismatch: 4, identity: 0.886

gtagctgttagtcaaaaaagactaacagttcaggg	CRISPR spacer
atggctattagtcaaaaaagactaacagctcaggg	Protospacer
.*.***.*********************.******

27. spacer 3.18|1331377|35|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to MK448683 (Streptococcus phage Javan149, complete genome) position: , mismatch: 4, identity: 0.886

gtagctgttagtcaaaaaagactaacagttcaggg	CRISPR spacer
atggctattagtcaaaaaagactaacagctcaggg	Protospacer
.*.***.*********************.******

28. spacer 9.14|1427664|35|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to NC_009552 (Geobacillus virus E2, complete genome) position: , mismatch: 5, identity: 0.857

ccaagcattcgccatgtcagcgcgttggtcaagag	CRISPR spacer
ccacttgttcgccatgtctgcgcgttggtcaagag	Protospacer
***  ..*********** ****************

29. spacer 3.15|1331178|38|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016918 (Parageobacillus thermoglucosidasius strain TM242 plasmid pNCI002, complete sequence) position: , mismatch: 6, identity: 0.842

tatcactttttcctggagcgccaaagatgaaagtgaat	CRISPR spacer
catttcgttttcatggagcgcgaaagatgaaagtgaat	Protospacer
.**. * ***** ******** ****************

30. spacer 3.15|1331178|38|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016624 (Parageobacillus thermoglucosidasius strain Wild Type plasmid pNCI002, complete sequence) position: , mismatch: 6, identity: 0.842

tatcactttttcctggagcgccaaagatgaaagtgaat	CRISPR spacer
catttcgttttcatggagcgcgaaagatgaaagtgaat	Protospacer
.**. * ***** ******** ****************

31. spacer 3.18|1331377|35|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to MK448712 (Streptococcus phage Javan237, complete genome) position: , mismatch: 6, identity: 0.829

gtagctgttagtcaaaaaagactaacagttcaggg	CRISPR spacer
ctagctattagtcaaaaaagactaacagctcaaca	Protospacer
 *****.*********************.***. .

32. spacer 3.18|1331377|35|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to MK448880 (Streptococcus phage Javan238, complete genome) position: , mismatch: 6, identity: 0.829

gtagctgttagtcaaaaaagactaacagttcaggg	CRISPR spacer
ctagctattagtcaaaaaagactaacagctcaaca	Protospacer
 *****.*********************.***. .

33. spacer 12.16|3275896|38|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to NC_008376 (Geobacillus phage GBSV1, complete genome) position: , mismatch: 6, identity: 0.842

catactcttgtttatgtatacgatgagattgctcgttt	CRISPR spacer
catactcttgtttatgtatacgatgggaacgtacattt	Protospacer
*************************.** .*. *.***

34. spacer 12.16|3275896|38|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to NC_009737 (Bacillus virus 1, complete genome) position: , mismatch: 6, identity: 0.842

catactcttgtttatgtatacgatgagattgctcgttt	CRISPR spacer
catactcttgtttatgtatacgatgggaacgtacattt	Protospacer
*************************.** .*. *.***

35. spacer 11.24|3265427|35|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to MT741943 (Acinetobacter phage Meroveus, complete genome) position: , mismatch: 8, identity: 0.771

aaaaaattcataaaataaatgtttacatatacaaa	CRISPR spacer
aaaaaattaatcaaataaatgtttacttttgatag	Protospacer
******** ** ************** * *.  *.

36. spacer 11.24|3265427|35|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to MN732883 (Acinetobacter phage Kimel, complete genome) position: , mismatch: 8, identity: 0.771

aaaaaattcataaaataaatgtttacatatacaaa	CRISPR spacer
aaaaaattaatcaaataaatgtttacttttgatag	Protospacer
******** ** ************** * *.  *.

37. spacer 11.24|3265427|35|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to NC_049492 (Acinetobacter phage vB_AbaP_Kimel, complete genome) position: , mismatch: 8, identity: 0.771

aaaaaattcataaaataaatgtttacatatacaaa	CRISPR spacer
aaaaaattaatcaaataaatgtttacttttgatag	Protospacer
******** ** ************** * *.  *.

38. spacer 11.24|3265427|35|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to MT409116 (Acinetobacter phage Octan, complete genome) position: , mismatch: 8, identity: 0.771

aaaaaattcataaaataaatgtttacatatacaaa	CRISPR spacer
aaaaaattaatcaaataaatgtttacttttgatag	Protospacer
******** ** ************** * *.  *.

39. spacer 11.24|3265427|35|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to NC_049445 (Acinetobacter phage AbTZA1, complete genome) position: , mismatch: 8, identity: 0.771

aaaaaattcataaaataaatgtttacatatacaaa	CRISPR spacer
aaaaaattaatcaaataaatgtttacttttgatag	Protospacer
******** ** ************** * *.  *.

40. spacer 11.24|3265427|35|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to NC_049494 (Acinetobacter phage vB_AbaM_PhT2, complete genome) position: , mismatch: 8, identity: 0.771

aaaaaattcataaaataaatgtttacatatacaaa	CRISPR spacer
aaaaaattaatcaaataaatgtttacttttgatag	Protospacer
******** ** ************** * *.  *.

41. spacer 11.31|3265896|37|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021839 (Anoxybacillus flavithermus strain 52-1A plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.784

ttttgtca-----atgtatttttatatatttcatttaaaatc	CRISPR spacer
-----tcaaaaacatttatttttatatattttatttaaaatt	Protospacer
     ***     ** ***************.*********.

42. spacer 12.1|3275096|34|NZ_CP015436|PILER-CR matches to NC_048773 (Aeromonas phage 4_4572, complete genome) position: , mismatch: 8, identity: 0.765

gaagcactggaactgatgaaacatgggggacacg	CRISPR spacer
aaagcactggaaatgatgaaacgtggtgccaagg	Protospacer
.*********** *********.*** *   * *

43. spacer 1.4|534054|38|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014287 (Bacillus thuringiensis strain Bt185 plasmid pBT1850042, complete sequence) position: , mismatch: 9, identity: 0.763

ttcctcctccaaataaaaaagcacccgatcactcggat----	CRISPR spacer
atcctcctccaaaataaaaagcacccga----atggatgcta	Protospacer
 ************  *************     .****

44. spacer 1.4|534054|38|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032613 (Bacillus thuringiensis strain QZL38 plasmid p.6, complete sequence) position: , mismatch: 9, identity: 0.763

ttcctcctccaaataaaaaagcacccgatcactcggat----	CRISPR spacer
atcctcctccaaaataaaaagcacccga----atggatgcta	Protospacer
 ************  *************     .****

45. spacer 11.21|3265229|35|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013345 (Sphingopyxis macrogoltabida strain 203N plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

tgaaatcgtctcgaagcgttgttgggttaatcttc	CRISPR spacer
ggaaatcggctcgaagcgttggtgggcgaacatct	Protospacer
 ******* ************ ****. **. *..

46. spacer 1.4|534054|38|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040335 (Bacillus cereus strain DLOU-Changhai plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.737

ttcctcctccaaataaaaaagcacccgatcactcggat	CRISPR spacer
ttcctcctccaaaataaaaagcacccgaatggatgctt	Protospacer
*************  ************* ..  .*  *

47. spacer 12.28|3276700|36|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050098 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence) position: , mismatch: 10, identity: 0.722

tttgtcacatcgcctttgcgatctcaacgagtaatt	CRISPR spacer
tcaacgacatcgccttggcgatctcgacgagttgct	Protospacer
*. .. ********** ********.****** ..*

48. spacer 1.4|534054|38|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031072 (Bacillus mycoides strain BPN401 plasmid pl395, complete sequence) position: , mismatch: 11, identity: 0.711

ttcctcctccaaataaaaaagcacccgatcactcggat	CRISPR spacer
atcctcctccaaaataaaaagcacccgaatggatgctt	Protospacer
 ************  ************* ..  .*  *

49. spacer 1.4|534054|38|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to KT967075 (Bacillus phage phi4I1, complete genome) position: , mismatch: 11, identity: 0.711

ttcctcctccaaataaaaaagcacccgatcactcggat	CRISPR spacer
atcctcctccaaaataaaaagcacccgaatggatgctt	Protospacer
 ************  ************* ..  .*  *

50. spacer 1.4|534054|38|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to NC_031055 (Bacillus phage PfEFR-5, complete genome) position: , mismatch: 11, identity: 0.711

ttcctcctccaaataaaaaagcacccgatcactcggat	CRISPR spacer
atcctcctccaaaataaaaagcacccgaatggatgctt	Protospacer
 ************  ************* ..  .*  *

51. spacer 1.4|534054|38|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to MG710484 (Bacillus phage BtiUFT6.51-F, complete genome) position: , mismatch: 11, identity: 0.711

ttcctcctccaaataaaaaagcacccgatcactcggat	CRISPR spacer
atcctcctccaaaataaaaagcacccgaatggatgctt	Protospacer
 ************  ************* ..  .*  *

52. spacer 1.4|534054|38|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to KT725776 (Bacillus phage vB_BceS-MY192, partial genome) position: , mismatch: 11, identity: 0.711

ttcctcctccaaataaaaaagcacccgatcactcggat	CRISPR spacer
atcctcctccaaaataaaaagcacccgaatggatgctt	Protospacer
 ************  ************* ..  .*  *

53. spacer 1.4|534054|38|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to NC_018085 (Bacillus phage BtCS33, complete genome) position: , mismatch: 11, identity: 0.711

ttcctcctccaaataaaaaagcacccgatcactcggat	CRISPR spacer
atcctcctccaaaataaaaagcacccgaatggatgctt	Protospacer
 ************  ************* ..  .*  *

54. spacer 1.4|534054|38|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to NC_048641 (Bacillus phage PfEFR-4, complete genome) position: , mismatch: 11, identity: 0.711

ttcctcctccaaataaaaaagcacccgatcactcggat	CRISPR spacer
atcctcctccaaaataaaaagcacccgaatggatgctt	Protospacer
 ************  ************* ..  .*  *

55. spacer 1.4|534054|38|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009691 (Bacillus mycoides strain ATCC 6462 plasmid pBMX_1, complete sequence) position: , mismatch: 11, identity: 0.711

ttcctcctccaaataaaaaagcacccgatcactcggat	CRISPR spacer
atcctcctccaaaataaaaagcacccgaatggatgctt	Protospacer
 ************  ************* ..  .*  *

56. spacer 6.8|1382726|37|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 11, identity: 0.703

ttacaactgtggatggatctgaagggtcggtgatcaa	CRISPR spacer
cagcaactgttgatggatctgaaaggtcgtccattgg	Protospacer
. .******* ************.***** . **...

57. spacer 3.22|1331640|35|NZ_CP015436|CRISPRCasFinder,CRT,PILER-CR matches to MG969427 (Anoxybacillus phage A403, complete genome) position: , mismatch: 12, identity: 0.657

gcaccttttcataccgttctgctttctctaatctt	CRISPR spacer
aagccttcttataccgttctgctttctccgcctgc	Protospacer
. .****.*.******************.. .. .

58. spacer 11.27|3265626|37|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034156 (Rhodococcus sp. NJ-530 plasmid unnamed4, complete sequence) position: , mismatch: 12, identity: 0.676

ctgttgtgtcggcaccggcgcaatcaatttcacgctt	CRISPR spacer
acaggaggggtgcaccgccgcaatcaatttcacgatt	Protospacer
 ..  . *   ****** **************** **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1103926 : 1143044

Streptomyces_phage(50.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044744103.1\|1103926_1104439_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_066329471.1\|1104587_1104839_-	hypothetical protein	NA	NA	NA	NA
WP_066329475.1\|1105880_1106444_-	hypothetical protein	NA	NA	NA	NA
WP_044745802.1\|1106694_1107294_-	hypothetical protein	NA	NA	NA	NA
WP_044744209.1\|1107995_1108424_-	hypothetical protein	NA	NA	NA	NA
WP_044743716.1\|1109558_1110155_-	hypothetical protein	NA	NA	NA	NA
WP_044743719.1\|1110463_1110709_-	hypothetical protein	NA	NA	NA	NA
WP_044743717.1\|1110959_1111199_-	hypothetical protein	NA	NA	NA	NA
WP_156487560.1\|1111199_1118003_-	DNRLRE domain-containing protein	NA	NA	NA	NA
WP_044744015.1\|1119382_1120891_-	carboxypeptidase M32	NA	NA	NA	NA
WP_044744014.1\|1120998_1122936_-	ATP-dependent DNA helicase	A0A2P1N093	Streptomyces_phage	1.8e-11	22.6
WP_044744786.1\|1124238_1124466_-	hypothetical protein	NA	NA	NA	NA
WP_044744787.1\|1124844_1125063_-	hypothetical protein	NA	NA	NA	NA
WP_044744788.1\|1125075_1125666_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_082828126.1\|1128032_1128329_-\|transposase	transposase	NA	NA	NA	NA
WP_156487504.1\|1128368_1128512_-	hypothetical protein	NA	NA	NA	NA
WP_082828125.1\|1128618_1129020_-	hypothetical protein	NA	NA	NA	NA
WP_066329481.1\|1129059_1130346_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_044742348.1\|1130676_1131021_-\|transposase	transposase	NA	NA	NA	NA
WP_052660929.1\|1131499_1132270_+	hypothetical protein	NA	NA	NA	NA
WP_044742346.1\|1132456_1132966_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_044742345.1\|1132967_1133444_+	hypothetical protein	NA	NA	NA	NA
WP_044742344.1\|1133487_1133805_+	hypothetical protein	NA	NA	NA	NA
WP_156487503.1\|1134330_1134498_-	hypothetical protein	NA	NA	NA	NA
WP_156487559.1\|1134754_1134850_-	YvrJ family protein	NA	NA	NA	NA
WP_044742382.1\|1135120_1136257_-	class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA
WP_044742381.1\|1136249_1137956_-	EAL domain-containing protein	G3MA91	Bacillus_virus	8.0e-24	37.5
WP_044742380.1\|1139086_1139383_-	cell division regulator GpsB	NA	NA	NA	NA
WP_156487502.1\|1139457_1139601_-	hypothetical protein	NA	NA	NA	NA
WP_066329411.1\|1140008_1141283_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_066329493.1\|1141757_1143044_-\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1576498 : 1586342

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044742188.1\|1576498_1577647_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	7.0e-24	35.1
WP_044742187.1\|1577968_1578877_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	7.5e-37	41.4
WP_044742186.1\|1578992_1579484_-	DUF3907 family protein	NA	NA	NA	NA
WP_044742185.1\|1579503_1579923_-	hypothetical protein	NA	NA	NA	NA
WP_044742184.1\|1580284_1580866_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.7e-16	36.6
WP_044742183.1\|1580846_1581623_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	4.6e-11	27.6
WP_044742182.1\|1581883_1582399_+	DUF309 domain-containing protein	NA	NA	NA	NA
WP_044742181.1\|1582410_1582758_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_044742180.1\|1582862_1583327_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	9.4e-44	62.8
WP_044742179.1\|1583378_1584572_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.1e-117	53.8
WP_044742178.1\|1584591_1585242_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.2e-41	45.2
WP_044742177.1\|1585256_1586342_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	3.5e-57	35.5

DBSCAN-SWA_3

2262703 : 2278026

Staphylococcus_prophage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044745120.1\|2262703_2264179_+\|transposase	IS1182 family transposase	Q9MBP7	Staphylococcus_prophage	2.4e-69	34.4
WP_052660940.1\|2265722_2267039_+\|transposase	IS1182 family transposase	Q9MBP7	Staphylococcus_prophage	1.1e-57	36.8
WP_156487583.1\|2267014_2267452_+\|transposase	transposase	Q9MBP7	Staphylococcus_prophage	5.6e-22	40.5
WP_044742529.1\|2271775_2272246_+	IstB-like ATP-binding protein	U5N3V8	Enterobacteria_phage	3.4e-17	37.6
WP_044742528.1\|2272270_2273719_-\|transposase	IS66 family transposase	NA	NA	NA	NA
WP_082063583.1\|2273820_2274144_+\|transposase	transposase	U5N3V8	Enterobacteria_phage	4.0e-17	43.8
WP_044742527.1\|2274325_2275696_-	hypothetical protein	NA	NA	NA	NA
WP_156487548.1\|2277399_2278026_+\|transposase	transposase	A0A1X9I5T2	Streptococcus_phage	5.1e-53	55.0

DBSCAN-SWA_4

2382701 : 2388397

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044741440.1\|2382701_2383292_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	3.4e-54	56.3
WP_044741441.1\|2383513_2383771_-	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_044741442.1\|2383796_2384753_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	2.4e-49	38.6
WP_044741443.1\|2384810_2385773_-	YvcK family protein	A1IMD5	Streptococcus_phage	2.5e-62	41.2
WP_044741444.1\|2385769_2386663_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	3.0e-06	29.8
WP_044741445.1\|2386678_2387137_-	8-oxo-dGTP diphosphatase	K4F7D9	Cronobacter_phage	6.5e-05	30.1
WP_044741446.1\|2387449_2388397_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	8.0e-90	55.5

DBSCAN-SWA_5

3066034 : 3135275

Bacillus_phage(13.51%)

terminase,portal,tRNA,plate,integrase,protease,holin,tail

attL 3092332:3092352|attR 3142945:3142965

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044742003.1\|3066034_3066637_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_044742002.1\|3066934_3067297_+	holo-ACP synthase	NA	NA	NA	NA
WP_044742001.1\|3067387_3068401_+	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA
WP_156487579.1\|3068608_3069775_+	alanine racemase	A0A0P0YM39	Yellowstone_lake_mimivirus	1.8e-30	29.9
WP_044741999.1\|3069913_3070195_+	hypothetical protein	NA	NA	NA	NA
WP_003253417.1\|3070199_3070550_+	type II toxin-antitoxin system endoribonuclease NdoA	A0A2P0ZKX3	Lactobacillus_phage	2.0e-14	38.6
WP_044741998.1\|3070678_3072844_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA
WP_139788175.1\|3073095_3073221_-	cortex morphogenetic protein CmpA	NA	NA	NA	NA
WP_044741997.1\|3073304_3073781_+	SprT family protein	NA	NA	NA	NA
WP_044743247.1\|3081442_3081901_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_044743246.1\|3081897_3082608_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_044743245.1\|3082597_3083044_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA
WP_044743244.1\|3083040_3084054_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	7.3e-65	41.8
WP_044743243.1\|3084457_3086425_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	1.4e-59	31.5
WP_044743242.1\|3086543_3087032_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_044743241.1\|3087062_3087722_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA
WP_080859420.1\|3087718_3087871_+	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA
WP_044743239.1\|3087895_3088642_+	twin-arginine translocase subunit TatC	NA	NA	NA	NA
WP_044743238.1\|3088655_3088856_-	YdiK family protein	NA	NA	NA	NA
WP_044743237.1\|3088849_3089581_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_044743236.1\|3090356_3090641_+	co-chaperone GroES	A0A221S4G8	uncultured_virus	1.1e-18	53.8
WP_044743235.1\|3090722_3092351_+	chaperonin GroEL	A0A219YK78	uncultured_virus	6.7e-161	57.9
3092332:3092352	attL	NA	NA	NA	NA
WP_044743234.1\|3092427_3093627_-\|integrase	site-specific integrase	S6C485	Thermus_phage	6.7e-110	54.7
WP_082063643.1\|3094587_3095283_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_044743231.1\|3095284_3096487_-	hypothetical protein	NA	NA	NA	NA
WP_044743230.1\|3096486_3097395_-	serine/threonine protein kinase	M1HHG8	Acanthocystis_turfacea_Chlorella_virus	9.9e-13	31.8
WP_044743229.1\|3097712_3098153_-	ImmA/IrrE family metallo-endopeptidase	A0A2P1JU12	Anoxybacillus_phage	1.6e-37	55.9
WP_044743228.1\|3098130_3099231_-	SAP domain-containing protein	NA	NA	NA	NA
WP_044743227.1\|3099254_3099692_-	helix-turn-helix domain-containing protein	A0A2P1JU09	Anoxybacillus_phage	3.7e-26	46.5
WP_044743226.1\|3099958_3100186_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_156487534.1\|3100228_3100393_+	hypothetical protein	NA	NA	NA	NA
WP_044743225.1\|3100364_3100727_-	hypothetical protein	NA	NA	NA	NA
WP_063504913.1\|3100768_3101179_-	helix-turn-helix domain-containing protein	S5MTZ5	Brevibacillus_phage	9.9e-13	42.6
WP_044743224.1\|3101323_3101548_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_082063642.1\|3102268_3102574_+	hypothetical protein	S6C476	Thermus_phage	1.2e-20	58.8
WP_044743222.1\|3102570_3103269_+	hypothetical protein	A0A1B1P7T7	Bacillus_phage	3.1e-38	42.2
WP_044743221.1\|3103320_3103842_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_044743220.1\|3104249_3104444_+	hypothetical protein	NA	NA	NA	NA
WP_044743219.1\|3104440_3105400_+	hypothetical protein	Q0H280	Geobacillus_phage	2.1e-167	92.5
WP_044743218.1\|3105399_3106245_+	recombination protein RecT	Q0H279	Geobacillus_phage	4.4e-132	88.6
WP_044743217.1\|3106295_3107273_+	DnaD domain protein	A0A0U4JX08	Bacillus_phage	2.1e-37	71.3
WP_082063644.1\|3107524_3107692_+	Fur-regulated basic protein FbpA	NA	NA	NA	NA
WP_082063641.1\|3107639_3107864_+	hypothetical protein	NA	NA	NA	NA
WP_044743249.1\|3108386_3108554_+	hypothetical protein	NA	NA	NA	NA
WP_082063640.1\|3108616_3108808_-	hypothetical protein	NA	NA	NA	NA
WP_082063639.1\|3108954_3109056_-	YjcZ family sporulation protein	NA	NA	NA	NA
WP_082063637.1\|3109330_3109462_+	DUF3954 domain-containing protein	NA	NA	NA	NA
WP_139788024.1\|3109514_3109652_-	Spo0E family sporulation regulatory protein-aspartic acid phosphatase	NA	NA	NA	NA
WP_044743216.1\|3109892_3110900_-	hypothetical protein	NA	NA	NA	NA
WP_044743215.1\|3111185_3111338_+	hypothetical protein	NA	NA	NA	NA
WP_044743214.1\|3111359_3111818_+	hypothetical protein	A0A290FZR5	Caldibacillus_phage	1.1e-39	61.2
WP_044743213.1\|3112053_3112257_+	hypothetical protein	NA	NA	NA	NA
WP_044743212.1\|3112335_3113100_+	hypothetical protein	A0A2P1JTW4	Anoxybacillus_phage	6.9e-68	61.3
WP_156487578.1\|3113102_3114395_+\|terminase	PBSX family phage terminase large subunit	A0A2P1JTW5	Anoxybacillus_phage	1.1e-166	68.1
WP_044743210.1\|3114398_3115925_+\|portal	phage portal protein	A0A1B1P7C8	Bacillus_phage	2.3e-155	54.6
WP_044743209.1\|3115921_3116836_+	hypothetical protein	A0A249XXB6	Clostridium_phage	1.0e-49	38.7
WP_044743208.1\|3116847_3117057_+	hypothetical protein	NA	NA	NA	NA
WP_044743207.1\|3117077_3118289_+\|terminase	terminase	A0A1B1P7E4	Bacillus_phage	2.1e-74	49.3
WP_044743206.1\|3118307_3119249_+	hypothetical protein	A5GYL9	Lactococcus_phage	2.3e-41	33.5
WP_044743205.1\|3119264_3119444_+	hypothetical protein	NA	NA	NA	NA
WP_044743204.1\|3119450_3119831_+	DUF3199 family protein	A0A1B1P7D6	Bacillus_phage	2.3e-16	40.5
WP_044743203.1\|3119827_3120181_+	DUF3599 family protein	NA	NA	NA	NA
WP_044743202.1\|3120177_3120678_+	HK97 gp10 family phage protein	A0A249XXA4	Clostridium_phage	1.4e-40	51.2
WP_044743201.1\|3120688_3121129_+	hypothetical protein	NA	NA	NA	NA
WP_099458851.1\|3121145_3121331_+	hypothetical protein	NA	NA	NA	NA
WP_044743200.1\|3121331_3122675_+\|portal	phage portal protein	A0A0A7RTT5	Clostridium_phage	1.6e-91	45.9
WP_044743199.1\|3122675_3123119_+\|tail	phage tail tube protein	A0A0K2CNG3	Brevibacillus_phage	8.4e-26	43.5
WP_044743198.1\|3123170_3123602_+\|portal	phage portal protein	NA	NA	NA	NA
WP_052660958.1\|3123793_3126970_+	transglycosylase SLT domain-containing protein	A0A1L2JY60	Aeribacillus_phage	1.2e-60	57.4
WP_044743197.1\|3126962_3127640_+	LysM peptidoglycan-binding domain-containing protein	A0A2H4J2N2	uncultured_Caudovirales_phage	8.4e-25	35.1
WP_044743196.1\|3127636_3128620_+	hypothetical protein	A0A2H4IZP4	uncultured_Caudovirales_phage	5.1e-39	33.9
WP_044743195.1\|3128616_3128886_+	DUF2577 domain-containing protein	NA	NA	NA	NA
WP_044743194.1\|3128890_3129313_+	DUF2634 domain-containing protein	NA	NA	NA	NA
WP_044743193.1\|3129305_3130328_+\|plate	baseplate J/gp47 family protein	S6AVU3	Thermus_phage	4.6e-67	40.9
WP_044743192.1\|3130317_3130863_+	YmfQ family protein	A0A0A7RUW8	Clostridium_phage	5.1e-33	45.2
WP_044743191.1\|3130864_3131287_+	hypothetical protein	A0A0N9S0E3	Mycobacterium_phage	4.4e-08	55.8
WP_044743190.1\|3131287_3131593_+	hypothetical protein	A0A0K1Y8A9	Streptomyces_phage	5.8e-10	46.5
WP_044743189.1\|3131592_3132162_+	hypothetical protein	NA	NA	NA	NA
WP_044743188.1\|3132161_3132377_+	hypothetical protein	NA	NA	NA	NA
WP_044743187.1\|3132553_3132970_+\|holin	phage holin family protein	A0A1U9WQR6	Geobacillus_phage	2.4e-38	61.2
WP_066329600.1\|3132969_3133707_+	N-acetylmuramoyl-L-alanine amidase	E5DV68	Deep-sea_thermophilic_phage	9.6e-83	83.1
WP_052661002.1\|3134678_3135275_+	hypothetical protein	A0A290GDU0	Caldibacillus_phage	5.0e-05	32.1
3142945:3142965	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3160888 : 3168567

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044741328.1\|3160888_3162181_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.0e-18	25.2
WP_044741329.1\|3162259_3162988_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3G7P8	Synechococcus_phage	1.1e-46	42.6
WP_044741330.1\|3162975_3163230_+	phosphoribosylformylglycinamidine synthase subunit PurS	A0A0E3FJ99	Synechococcus_phage	1.5e-06	37.0
WP_044741331.1\|3163226_3163913_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_044741332.1\|3163896_3166122_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	5.2e-164	40.9
WP_044741333.1\|3166097_3167513_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	6.0e-49	32.3
WP_044741334.1\|3167526_3168567_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	7.0e-71	43.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP015437

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

23403 : 44611

Bacillus_phage(44.44%)

integrase,head,portal,capsid,protease

attL 20577:20592|attR 38943:38958

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
20577:20592	attL	NA	NA	NA	NA
WP_044741826.1\|23403_24537_+	hypothetical protein	D2XQ10	Bacillus_virus	2.1e-28	28.2
WP_156489127.1\|24650_24788_+	hypothetical protein	NA	NA	NA	NA
WP_044741825.1\|24896_25091_+	hypothetical protein	NA	NA	NA	NA
WP_052660908.1\|25103_25463_-	helix-turn-helix transcriptional regulator	A0A1B1P7A0	Bacillus_phage	1.7e-08	30.6
WP_044741871.1\|25663_25843_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_044741824.1\|25900_26215_+	hypothetical protein	NA	NA	NA	NA
WP_044741823.1\|26214_26568_+	hypothetical protein	NA	NA	NA	NA
WP_082063458.1\|26549_26822_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_044741821.1\|26818_27061_+	hypothetical protein	NA	NA	NA	NA
WP_044741820.1\|27057_27564_+	hypothetical protein	I2E8Y4	Clostridium_phage	5.0e-06	38.1
WP_044741819.1\|27588_27798_+	hypothetical protein	NA	NA	NA	NA
WP_156489128.1\|27801_27939_+	hypothetical protein	NA	NA	NA	NA
WP_044741818.1\|27935_28175_+	hypothetical protein	NA	NA	NA	NA
WP_044741817.1\|28175_28358_+	Fur-regulated basic protein FbpA	A0A2P1JU06	Anoxybacillus_phage	9.7e-05	52.7
WP_082063462.1\|28382_28493_+	hypothetical protein	NA	NA	NA	NA
WP_044741870.1\|28494_29013_+	Holliday junction resolvase RecU	A0A1B1P798	Bacillus_phage	1.3e-49	54.4
WP_156489129.1\|29009_29171_+	hypothetical protein	NA	NA	NA	NA
WP_044741816.1\|29396_29579_+	hypothetical protein	NA	NA	NA	NA
WP_044741815.1\|29817_30081_+	hypothetical protein	O64167	Bacillus_phage	7.7e-19	52.8
WP_044741814.1\|30130_30937_+	DNA adenine methylase	Q24LC8	Clostridium_phage	1.3e-61	45.6
WP_044741813.1\|30981_31350_+	hypothetical protein	NA	NA	NA	NA
WP_044741812.1\|31464_31713_+	hypothetical protein	NA	NA	NA	NA
WP_156489130.1\|32657_33011_+	ArpU family transcriptional regulator	Q9ZXB9	Bacillus_phage	2.8e-24	57.8
WP_066329676.1\|33135_33633_+	hypothetical protein	A0A2P1JU01	Anoxybacillus_phage	3.6e-09	38.8
WP_044741881.1\|34017_34203_+	helix-turn-helix domain-containing protein	A6M9A5	Geobacillus_virus	1.7e-17	71.9
WP_044741867.1\|35035_36268_+	DNA modification methylase	A0A2I4R670	Erysipelothrix_phage	9.0e-110	51.6
WP_052660916.1\|36468_36702_+	hypothetical protein	A0A1B1P7D4	Bacillus_phage	6.6e-06	36.2
WP_044741866.1\|36751_37669_+	hypothetical protein	A0A1B1P7C9	Bacillus_phage	2.3e-49	43.5
WP_044741865.1\|37682_38516_-\|integrase	tyrosine-type recombinase/integrase	A0A1B1P7C7	Bacillus_phage	8.3e-91	60.6
WP_044741864.1\|38681_38945_+	hypothetical protein	NA	NA	NA	NA
WP_044741863.1\|39024_40443_+	DEAD/DEAH box helicase family protein	C9E2I7	Enterococcus_phage	2.8e-163	59.9
38943:38958	attR	NA	NA	NA	NA
WP_082063460.1\|40402_42475_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	4.0e-142	42.9
WP_052660914.1\|42543_43293_+\|head,protease	HK97 family phage prohead protease	W8EBB3	Geobacillus_phage	4.9e-42	43.9
WP_052660913.1\|43384_44611_+\|capsid	phage major capsid protein	A0A0K1LLG2	Bacillus_phage	8.4e-116	56.5

Anti-CRISPR protein detection

Acr_ID: NZ_CP015437.1|WP_156489127.1|24650_24788_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_CP015437.1|WP_044741825.1|24896_25091_+|hypothetical-protein

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Acr_ID: NZ_CP015437.1|WP_044741824.1|25900_26215_+|hypothetical-protein

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Acr_ID: NZ_CP015437.1|WP_044741823.1|26214_26568_+|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP015437.1|WP_156489127.1|24650_24788_+|hypothetical-protein

24650_24788_+

45 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.45454545454545453	0.9482758620689655

23403-44611

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP015436_5	Unclear	5.1\|1364472\|38\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	1364472-1364509	38	26887-26850	0
NZ_CP015436_9	Orphan	9.3\|1426931\|36\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	1426931-1426966	36	28990-29025	1

1. spacer 5.1|1364472|38|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015437 position: 26887-26850, mismatch: 0

ggtgtgtcccacctctcgcatgttgtcatcaaagtacc	CRISPR spacer
ggtgtgtcccacctctcgcatgttgtcatcaaagtacc	Protospacer
**************************************

2. spacer 9.3|1426931|36|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015437 position: 28990-29025, mismatch: 1

tatctagcggcgacgggattatgagagtggagaaaa	CRISPR spacer
tatctagcggcggcgggattatgagagtggagaaaa	Protospacer
************.***********************

NZ_CP015437.1|WP_044741825.1|24896_25091_+|hypothetical-protein

24896_25091_+

64 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.45454545454545453	0.9482758620689655

23403-44611

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP015436_5	Unclear	5.1\|1364472\|38\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	1364472-1364509	38	26887-26850	0
NZ_CP015436_9	Orphan	9.3\|1426931\|36\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	1426931-1426966	36	28990-29025	1

1. spacer 5.1|1364472|38|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015437 position: 26887-26850, mismatch: 0

ggtgtgtcccacctctcgcatgttgtcatcaaagtacc	CRISPR spacer
ggtgtgtcccacctctcgcatgttgtcatcaaagtacc	Protospacer
**************************************

2. spacer 9.3|1426931|36|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015437 position: 28990-29025, mismatch: 1

tatctagcggcgacgggattatgagagtggagaaaa	CRISPR spacer
tatctagcggcggcgggattatgagagtggagaaaa	Protospacer
************.***********************

NZ_CP015437.1|WP_044741824.1|25900_26215_+|hypothetical-protein

25900_26215_+

104 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.47619047619047616	0.7241379310344828

23403-44611

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP015436_5	Unclear	5.1\|1364472\|38\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	1364472-1364509	38	26887-26850	0
NZ_CP015436_9	Orphan	9.3\|1426931\|36\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	1426931-1426966	36	28990-29025	1

1. spacer 5.1|1364472|38|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015437 position: 26887-26850, mismatch: 0

ggtgtgtcccacctctcgcatgttgtcatcaaagtacc	CRISPR spacer
ggtgtgtcccacctctcgcatgttgtcatcaaagtacc	Protospacer
**************************************

2. spacer 9.3|1426931|36|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015437 position: 28990-29025, mismatch: 1

tatctagcggcgacgggattatgagagtggagaaaa	CRISPR spacer
tatctagcggcggcgggattatgagagtggagaaaa	Protospacer
************.***********************

NZ_CP015437.1|WP_044741823.1|26214_26568_+|hypothetical-protein

26214_26568_+

117 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.47619047619047616	0.7241379310344828

23403-44611

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP015436_5	Unclear	5.1\|1364472\|38\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	1364472-1364509	38	26887-26850	0
NZ_CP015436_9	Orphan	9.3\|1426931\|36\|NZ_CP015436\|PILER-CR,CRISPRCasFinder,CRT	1426931-1426966	36	28990-29025	1

1. spacer 5.1|1364472|38|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015437 position: 26887-26850, mismatch: 0

ggtgtgtcccacctctcgcatgttgtcatcaaagtacc	CRISPR spacer
ggtgtgtcccacctctcgcatgttgtcatcaaagtacc	Protospacer
**************************************

2. spacer 9.3|1426931|36|NZ_CP015436|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015437 position: 28990-29025, mismatch: 1

tatctagcggcgacgggattatgagagtggagaaaa	CRISPR spacer
tatctagcggcggcgggattatgagagtggagaaaa	Protospacer
************.***********************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP015436

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP015437

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information