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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP015379 Hafnia alvei strain HUMV-5920 chromosome, complete genome 5 crisprs DEDDh,cas3,WYL,csa3,DinG 0 14 9 0
NZ_CP015380 Hafnia alvei strain HUMV-5920 plasmid unnamed, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP015379
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015379_1 1622949-1623047 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015379_2 2130648-2130735 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015379_3 2450141-2450230 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015379_4 3132682-3133789 Orphan I-F
18 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015379_5 3195092-3195539 Orphan I-F
7 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP015379_5 5.4|3195300|32|NZ_CP015379|PILER-CR,CRISPRCasFinder,CRT 3195300-3195331 32 NZ_CP050151 Hafnia alvei strain A23BA plasmid pA23BA, complete sequence 42377-42408 0 1.0
NZ_CP015379_4 4.14|3133370|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR 3133370-3133401 32 MT135176 Aeromonas phage vB_AsoM_yong, complete genome 4766-4797 2 0.938
NZ_CP015379_1 1.1|1622984|29|NZ_CP015379|CRISPRCasFinder 1622984-1623012 29 NZ_CP032678 Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence 370404-370432 6 0.793
NZ_CP015379_4 4.2|3132771|31|NZ_CP015379|PILER-CR 3132771-3132801 31 NZ_CP034187 Deinococcus sp. S14-83 strain S14-83T plasmid unnamed3, complete sequence 78735-78765 7 0.774
NZ_CP015379_5 5.7|3195480|32|NZ_CP015379|CRISPRCasFinder,CRT 3195480-3195511 32 NZ_CP039495 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000669 plasmid pCFSAN000669_2, complete sequence 7750-7781 7 0.781
NZ_CP015379_5 5.7|3195480|32|NZ_CP015379|CRISPRCasFinder,CRT 3195480-3195511 32 CP051275 Salmonella phage SW-37, complete genome 8531-8562 7 0.781
NZ_CP015379_5 5.7|3195480|32|NZ_CP015379|CRISPRCasFinder,CRT 3195480-3195511 32 KC139516 Salmonella phage FSL SP-016, partial genome 14315-14346 7 0.781
NZ_CP015379_1 1.1|1622984|29|NZ_CP015379|CRISPRCasFinder 1622984-1623012 29 JX094500 Cronobacter phage CR5, complete genome 89551-89579 8 0.724
NZ_CP015379_4 4.2|3132771|31|NZ_CP015379|PILER-CR 3132771-3132801 31 NZ_CP054028 Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence 1529976-1530006 8 0.742
NZ_CP015379_4 4.4|3132771|32|NZ_CP015379|CRISPRCasFinder,CRT 3132771-3132802 32 NZ_CP034187 Deinococcus sp. S14-83 strain S14-83T plasmid unnamed3, complete sequence 78734-78765 8 0.75
NZ_CP015379_4 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT 3132831-3132861 31 MN693872 Marine virus AFVG_250M911, complete genome 61298-61328 8 0.742
NZ_CP015379_4 4.8|3133010|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR 3133010-3133041 32 NZ_CP054028 Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence 1214103-1214134 8 0.75
NZ_CP015379_4 4.15|3133430|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR 3133430-3133461 32 NZ_CP017431 Staphylococcus simulans strain MR4 plasmid unnamed4, complete sequence 147390-147416 8 0.75
NZ_CP015379_4 4.16|3133490|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR 3133490-3133521 32 CP000385 Mycobacterium sp. MCS Plasmid1, complete sequence 5441-5472 8 0.75
NZ_CP015379_4 4.16|3133490|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR 3133490-3133521 32 NC_008704 Mycobacterium sp. KMS plasmid pMKMS02, complete sequence 211272-211303 8 0.75
NZ_CP015379_4 4.4|3132771|32|NZ_CP015379|CRISPRCasFinder,CRT 3132771-3132802 32 NZ_CP054028 Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence 1529975-1530006 9 0.719
NZ_CP015379_4 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT 3132831-3132861 31 NZ_CP012498 Escherichia coli strain 06-00048 plasmid pCFSAN004178P_02, complete sequence 165922-165952 9 0.71
NZ_CP015379_4 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT 3132831-3132861 31 NZ_CP012500 Escherichia coli strain 09-00049 plasmid pCFSAN004180G, complete sequence 205221-205251 9 0.71
NZ_CP015379_4 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT 3132831-3132861 31 NZ_CP012501 Escherichia coli strain 08-00022 plasmid pCFSAN004179G, complete sequence 61567-61597 9 0.71
NZ_CP015379_4 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT 3132831-3132861 31 NZ_CP042296 Escherichia coli strain RM9088 plasmid p1RM9088, complete sequence 84937-84967 9 0.71
NZ_CP015379_4 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT 3132831-3132861 31 NZ_CP012499 Escherichia coli strain GB089 plasmid pCFSAN004181P, complete sequence 79650-79680 9 0.71
NZ_CP015379_4 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT 3132831-3132861 31 KX160215 Lactococcus phage 98104, complete genome 25855-25885 9 0.71
NZ_CP015379_4 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT 3132831-3132861 31 KX160205 Lactococcus phage 49801, complete genome 26549-26579 9 0.71
NZ_CP015379_4 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT 3132831-3132861 31 KX879641 Streptococcus phage CHPC577, complete genome 9657-9687 9 0.71
NZ_CP015379_4 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT 3132831-3132861 31 KX160212 Lactococcus phage 98101, complete genome 25418-25448 9 0.71
NZ_CP015379_4 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT 3132831-3132861 31 MN534318 Lactococcus phage proPhi5, complete genome 25635-25665 9 0.71
NZ_CP015379_4 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT 3132831-3132861 31 MN534315 Lactococcus phage proPhi1, complete genome 25635-25665 9 0.71
NZ_CP015379_4 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT 3132831-3132861 31 KU678389 Streptococcus virus 9871, complete genome 9835-9865 9 0.71
NZ_CP015379_4 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT 3132831-3132861 31 KX160218 Lactococcus phage 98204, complete genome 27437-27467 9 0.71
NZ_CP015379_4 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT 3132831-3132861 31 KU678391 Streptococcus virus 9873, complete genome 9835-9865 9 0.71
NZ_CP015379_4 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT 3132831-3132861 31 KX160217 Lactococcus phage 98203, complete genome 26232-26262 9 0.71
NZ_CP015379_4 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT 3132831-3132861 31 KX160214 Lactococcus phage 98103, complete genome 26497-26527 9 0.71
NZ_CP015379_4 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT 3132831-3132861 31 NC_031094 Streptococcus virus 9872, complete genome 9836-9866 9 0.71
NZ_CP015379_4 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT 3132831-3132861 31 KX160213 Lactococcus phage 98102, complete genome 25347-25377 9 0.71
NZ_CP015379_4 4.9|3133070|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR 3133070-3133101 32 NZ_CP004871 Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB46, complete sequence 7592-7623 9 0.719
NZ_CP015379_4 4.9|3133070|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR 3133070-3133101 32 NZ_CP011352 Bacillus thuringiensis strain YC-10 plasmid pYC4, complete sequence 18252-18283 9 0.719
NZ_CP015379_4 4.9|3133070|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR 3133070-3133101 32 NZ_CP013060 Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-5, complete sequence 37470-37501 9 0.719
NZ_CP015379_4 4.9|3133070|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR 3133070-3133101 32 NZ_CP010095 Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB47, complete sequence 7592-7623 9 0.719
NZ_CP015379_4 4.9|3133070|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR 3133070-3133101 32 MK843319 Bacillus phage vB_BthS-TP21T, complete genome 15647-15678 9 0.719
NZ_CP015379_4 4.9|3133070|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR 3133070-3133101 32 KT970646 Bacillus phage phiS58, complete genome 15647-15678 9 0.719
NZ_CP015379_4 4.9|3133070|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR 3133070-3133101 32 HE614281 Staphylococcus phage SpaA1 complete genome 16333-16364 9 0.719
NZ_CP015379_4 4.9|3133070|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR 3133070-3133101 32 NC_018277 Staphylococcus phage SpaA1, complete genome 16333-16364 9 0.719
NZ_CP015379_4 4.9|3133070|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR 3133070-3133101 32 NC_048628 Bacillus phage BceA1 complete genome 16333-16364 9 0.719
NZ_CP015379_4 4.9|3133070|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR 3133070-3133101 32 NC_025424 Bacillus phage Waukesha92, complete genome 29293-29324 9 0.719
NZ_CP015379_4 4.10|3133130|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR 3133130-3133161 32 JX100810 Caulobacter phage CcrColossus, complete genome 25103-25134 9 0.719
NZ_CP015379_4 4.12|3133250|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR 3133250-3133281 32 NZ_AP014579 Burkholderia sp. RPE67 plasmid p1, complete sequence 523118-523149 9 0.719
NZ_CP015379_4 4.12|3133250|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR 3133250-3133281 32 NC_016626 Burkholderia sp. YI23 plasmid byi_1p, complete sequence 364669-364700 9 0.719
NZ_CP015379_4 4.15|3133430|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR 3133430-3133461 32 NZ_CP015644 Staphylococcus simulans strain MR1 plasmid unnamed2, complete sequence 37187-37218 9 0.719
NZ_CP015379_4 4.15|3133430|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR 3133430-3133461 32 NZ_CP015644 Staphylococcus simulans strain MR1 plasmid unnamed2, complete sequence 59843-59874 9 0.719
NZ_CP015379_4 4.15|3133430|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR 3133430-3133461 32 NZ_CP017431 Staphylococcus simulans strain MR4 plasmid unnamed4, complete sequence 124729-124760 9 0.719
NZ_CP015379_4 4.15|3133430|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR 3133430-3133461 32 NZ_CP017429 Staphylococcus simulans strain MR3 plasmid unnamed5, complete sequence 317-348 9 0.719
NZ_CP015379_4 4.15|3133430|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR 3133430-3133461 32 NZ_CP017429 Staphylococcus simulans strain MR3 plasmid unnamed5, complete sequence 22980-23011 9 0.719
NZ_CP015379_4 4.15|3133430|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR 3133430-3133461 32 NZ_CP016158 Staphylococcus simulans strain MR2 plasmid unnamed1 22125-22156 9 0.719
NZ_CP015379_3 3.1|2450165|42|NZ_CP015379|CRISPRCasFinder 2450165-2450206 42 NZ_CP036488 Rahnella aquatilis strain MEM40 plasmid pMEM40-1, complete sequence 120292-120333 10 0.762
NZ_CP015379_3 3.1|2450165|42|NZ_CP015379|CRISPRCasFinder 2450165-2450206 42 NZ_CP032297 Rahnella aquatilis strain ZF7 plasmid pRAZF7, complete sequence 448971-449012 10 0.762
NZ_CP015379_3 3.1|2450165|42|NZ_CP015379|CRISPRCasFinder 2450165-2450206 42 NC_017060 Rahnella aquatilis HX2 plasmid PRA1, complete sequence 196254-196295 10 0.762
NZ_CP015379_3 3.1|2450165|42|NZ_CP015379|CRISPRCasFinder 2450165-2450206 42 NZ_CP034838 Rahnella aquatilis strain KM12 plasmid pKM12v1, complete sequence 185637-185678 10 0.762
NZ_CP015379_3 3.1|2450165|42|NZ_CP015379|CRISPRCasFinder 2450165-2450206 42 NZ_CP034839 Rahnella aquatilis strain KM25 plasmid pKM12v2, complete sequence 185637-185678 10 0.762
NZ_CP015379_3 3.1|2450165|42|NZ_CP015379|CRISPRCasFinder 2450165-2450206 42 NZ_CP034837 Rahnella aquatilis strain KM05 plasmid pKM05, complete sequence 145953-145994 10 0.762
NZ_CP015379_3 3.1|2450165|42|NZ_CP015379|CRISPRCasFinder 2450165-2450206 42 NC_015062 Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence 199439-199480 10 0.762
NZ_CP015379_4 4.9|3133070|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR 3133070-3133101 32 FJ982340 Burkholderia phage KS9, complete genome 25054-25085 10 0.688
NZ_CP015379_4 4.10|3133130|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR 3133130-3133161 32 NZ_CP013562 Rhizobium phaseoli strain N841 plasmid pRphaN841e, complete sequence 1120371-1120402 10 0.688
NZ_CP015379_4 4.10|3133130|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR 3133130-3133161 32 NZ_CP012399 Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence 316923-316954 10 0.688
NZ_CP015379_4 4.10|3133130|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR 3133130-3133161 32 NZ_CP028348 Novosphingobium sp. THN1 plasmid pTHN, complete sequence 155000-155031 11 0.656

1. spacer 5.4|3195300|32|NZ_CP015379|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050151 (Hafnia alvei strain A23BA plasmid pA23BA, complete sequence) position: , mismatch: 0, identity: 1.0

gagcagattgcgtggatgaaacgtcaaaagcc	CRISPR spacer
gagcagattgcgtggatgaaacgtcaaaagcc	Protospacer
********************************

2. spacer 4.14|3133370|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR matches to MT135176 (Aeromonas phage vB_AsoM_yong, complete genome) position: , mismatch: 2, identity: 0.938

tgatatgtggaacgaaccaatcggtttcttag	CRISPR spacer
tgatatgtggaacgagccaatcggattcttag	Protospacer
***************.******** *******

3. spacer 1.1|1622984|29|NZ_CP015379|CRISPRCasFinder matches to NZ_CP032678 (Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence) position: , mismatch: 6, identity: 0.793

agccgatcgagattcttctcaacatagct	CRISPR spacer
aaccgatcgagattcgtctcgacatattg	Protospacer
*.************* ****.***** . 

4. spacer 4.2|3132771|31|NZ_CP015379|PILER-CR matches to NZ_CP034187 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.774

tgtgtgggagccacctggattgccggcggtg	CRISPR spacer
catgtgggagacacctggattgcgggccgaa	Protospacer
..******** ************ *** * .

5. spacer 5.7|3195480|32|NZ_CP015379|CRISPRCasFinder,CRT matches to NZ_CP039495 (Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000669 plasmid pCFSAN000669_2, complete sequence) position: , mismatch: 7, identity: 0.781

atttatca-tgtactgctgatactggtacacaa	CRISPR spacer
-tacctcaccgtactgctgatactggtgctcaa	Protospacer
 * . *** .*****************.* ***

6. spacer 5.7|3195480|32|NZ_CP015379|CRISPRCasFinder,CRT matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 7, identity: 0.781

atttatca-tgtactgctgatactggtacacaa	CRISPR spacer
-tacctcaccgtactgctgatactggtgctcaa	Protospacer
 * . *** .*****************.* ***

7. spacer 5.7|3195480|32|NZ_CP015379|CRISPRCasFinder,CRT matches to KC139516 (Salmonella phage FSL SP-016, partial genome) position: , mismatch: 7, identity: 0.781

atttatca-tgtactgctgatactggtacacaa	CRISPR spacer
-tacctcaccgtactgctgatactggtgctcaa	Protospacer
 * . *** .*****************.* ***

8. spacer 1.1|1622984|29|NZ_CP015379|CRISPRCasFinder matches to JX094500 (Cronobacter phage CR5, complete genome) position: , mismatch: 8, identity: 0.724

agccgatcgagattcttctcaacatagct	CRISPR spacer
cgccaatcgagattcttctcaatcagagt	Protospacer
 ***.*****************.  .. *

9. spacer 4.2|3132771|31|NZ_CP015379|PILER-CR matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 8, identity: 0.742

tgtg-tgggagccacctggattgccggcggtg	CRISPR spacer
-gcgctgggagccgcctggcttgccggctcga	Protospacer
 *.* ********.***** ********   .

10. spacer 4.4|3132771|32|NZ_CP015379|CRISPRCasFinder,CRT matches to NZ_CP034187 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

tgtgtgggagccacctggattgccggcggtgt	CRISPR spacer
catgtgggagacacctggattgcgggccgaac	Protospacer
..******** ************ *** * ..

11. spacer 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT matches to MN693872 (Marine virus AFVG_250M911, complete genome) position: , mismatch: 8, identity: 0.742

aaaaaattgataatggaatgaagcgcgtcgt	CRISPR spacer
aaaaaattgataagagaatgaaggagcttat	Protospacer
************* .******** .  *..*

12. spacer 4.8|3133010|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 8, identity: 0.75

atgaagctgggcgcttttgctttgtgccgggc	CRISPR spacer
ttggggctgggcgctttggctttatgccgtca	Protospacer
 **..************ *****.*****   

13. spacer 4.15|3133430|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017431 (Staphylococcus simulans strain MR4 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

agaacatggaatgaatggacttatgtttatga	CRISPR spacer
----cat-taatgagtggatttatgtttatga	Protospacer
    ***  *****.****.************

14. spacer 4.16|3133490|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR matches to CP000385 (Mycobacterium sp. MCS Plasmid1, complete sequence) position: , mismatch: 8, identity: 0.75

acacatacagttcataccggccgcttgtttgc	CRISPR spacer
gcacatccagtccataccggccgcccattcga	Protospacer
.***** ****.************...**.* 

15. spacer 4.16|3133490|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR matches to NC_008704 (Mycobacterium sp. KMS plasmid pMKMS02, complete sequence) position: , mismatch: 8, identity: 0.75

acacatacagttcataccggccgcttgtttgc	CRISPR spacer
gcacatccagtccataccggccgcccattcga	Protospacer
.***** ****.************...**.* 

16. spacer 4.4|3132771|32|NZ_CP015379|CRISPRCasFinder,CRT matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 9, identity: 0.719

tgtg-tgggagccacctggattgccggcggtgt	CRISPR spacer
-gcgctgggagccgcctggcttgccggctcgaa	Protospacer
 *.* ********.***** ********   . 

17. spacer 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT matches to NZ_CP012498 (Escherichia coli strain 06-00048 plasmid pCFSAN004178P_02, complete sequence) position: , mismatch: 9, identity: 0.71

aaaaaattgataatggaatgaagcgcgtcgt	CRISPR spacer
ttaaagtagataatggaatgaagcgtcaaat	Protospacer
  ***.* *****************.   .*

18. spacer 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT matches to NZ_CP012500 (Escherichia coli strain 09-00049 plasmid pCFSAN004180G, complete sequence) position: , mismatch: 9, identity: 0.71

aaaaaattgataatggaatgaagcgcgtcgt	CRISPR spacer
ttaaagtagataatggaatgaagcgtcaaat	Protospacer
  ***.* *****************.   .*

19. spacer 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT matches to NZ_CP012501 (Escherichia coli strain 08-00022 plasmid pCFSAN004179G, complete sequence) position: , mismatch: 9, identity: 0.71

aaaaaattgataatggaatgaagcgcgtcgt	CRISPR spacer
ttaaagtagataatggaatgaagcgtcaaat	Protospacer
  ***.* *****************.   .*

20. spacer 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT matches to NZ_CP042296 (Escherichia coli strain RM9088 plasmid p1RM9088, complete sequence) position: , mismatch: 9, identity: 0.71

aaaaaattgataatggaatgaagcgcgtcgt	CRISPR spacer
ttaaagtagataatggaatgaagcgtcaaat	Protospacer
  ***.* *****************.   .*

21. spacer 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT matches to NZ_CP012499 (Escherichia coli strain GB089 plasmid pCFSAN004181P, complete sequence) position: , mismatch: 9, identity: 0.71

aaaaaattgataatggaatgaagcgcgtcgt	CRISPR spacer
ttaaagtagataatggaatgaagcgtcaaat	Protospacer
  ***.* *****************.   .*

22. spacer 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT matches to KX160215 (Lactococcus phage 98104, complete genome) position: , mismatch: 9, identity: 0.71

aaaaaattgataatggaatgaagcgcgtcgt	CRISPR spacer
ctgcaattgataacggaatgaagagcgctgg	Protospacer
  . *********.********* ***..* 

23. spacer 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT matches to KX160205 (Lactococcus phage 49801, complete genome) position: , mismatch: 9, identity: 0.71

aaaaaattgataatggaatgaagcgcgtcgt	CRISPR spacer
ctgcaattgataacggaatgaagagcgctgg	Protospacer
  . *********.********* ***..* 

24. spacer 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT matches to KX879641 (Streptococcus phage CHPC577, complete genome) position: , mismatch: 9, identity: 0.71

aaaaaattgataatggaatgaagcgcgtcgt	CRISPR spacer
ctgcaattgataacggaatgaagagcgctgg	Protospacer
  . *********.********* ***..* 

25. spacer 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT matches to KX160212 (Lactococcus phage 98101, complete genome) position: , mismatch: 9, identity: 0.71

aaaaaattgataatggaatgaagcgcgtcgt	CRISPR spacer
ctgcaattgataacggaatgaagagcgctgg	Protospacer
  . *********.********* ***..* 

26. spacer 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT matches to MN534318 (Lactococcus phage proPhi5, complete genome) position: , mismatch: 9, identity: 0.71

aaaaaattgataatggaatgaagcgcgtcgt	CRISPR spacer
ctgcaattgataacggaatgaagagcgctgg	Protospacer
  . *********.********* ***..* 

27. spacer 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT matches to MN534315 (Lactococcus phage proPhi1, complete genome) position: , mismatch: 9, identity: 0.71

aaaaaattgataatggaatgaagcgcgtcgt	CRISPR spacer
ctgcaattgataacggaatgaagagcgctgg	Protospacer
  . *********.********* ***..* 

28. spacer 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT matches to KU678389 (Streptococcus virus 9871, complete genome) position: , mismatch: 9, identity: 0.71

aaaaaattgataatggaatgaagcgcgtcgt	CRISPR spacer
ctgcaattgataacggaatgaagagcgctgg	Protospacer
  . *********.********* ***..* 

29. spacer 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT matches to KX160218 (Lactococcus phage 98204, complete genome) position: , mismatch: 9, identity: 0.71

aaaaaattgataatggaatgaagcgcgtcgt	CRISPR spacer
ctgcaattgataacggaatgaagagcgctgg	Protospacer
  . *********.********* ***..* 

30. spacer 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT matches to KU678391 (Streptococcus virus 9873, complete genome) position: , mismatch: 9, identity: 0.71

aaaaaattgataatggaatgaagcgcgtcgt	CRISPR spacer
ctgcaattgataacggaatgaagagcgctgg	Protospacer
  . *********.********* ***..* 

31. spacer 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT matches to KX160217 (Lactococcus phage 98203, complete genome) position: , mismatch: 9, identity: 0.71

aaaaaattgataatggaatgaagcgcgtcgt	CRISPR spacer
ctgcaattgataacggaatgaagagcgctgg	Protospacer
  . *********.********* ***..* 

32. spacer 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT matches to KX160214 (Lactococcus phage 98103, complete genome) position: , mismatch: 9, identity: 0.71

aaaaaattgataatggaatgaagcgcgtcgt	CRISPR spacer
ctgcaattgataacggaatgaagagcgctgg	Protospacer
  . *********.********* ***..* 

33. spacer 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT matches to NC_031094 (Streptococcus virus 9872, complete genome) position: , mismatch: 9, identity: 0.71

aaaaaattgataatggaatgaagcgcgtcgt	CRISPR spacer
ctgcaattgataacggaatgaagagcgctgg	Protospacer
  . *********.********* ***..* 

34. spacer 4.5|3132831|31|NZ_CP015379|CRISPRCasFinder,CRT matches to KX160213 (Lactococcus phage 98102, complete genome) position: , mismatch: 9, identity: 0.71

aaaaaattgataatggaatgaagcgcgtcgt	CRISPR spacer
ctgcaattgataacggaatgaagagcgctgg	Protospacer
  . *********.********* ***..* 

35. spacer 4.9|3133070|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP004871 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB46, complete sequence) position: , mismatch: 9, identity: 0.719

actaacgggtatacgttgccattcttcattca	CRISPR spacer
tttaacggctataccttgccattctgtatcag	Protospacer
 .****** ***** ********** .**. .

36. spacer 4.9|3133070|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011352 (Bacillus thuringiensis strain YC-10 plasmid pYC4, complete sequence) position: , mismatch: 9, identity: 0.719

actaacgggtatacgttgccattcttcattca	CRISPR spacer
tttaacggctataccttgccattctgtatcag	Protospacer
 .****** ***** ********** .**. .

37. spacer 4.9|3133070|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013060 (Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-5, complete sequence) position: , mismatch: 9, identity: 0.719

actaacgggtatacgttgccattcttcattca	CRISPR spacer
tttaacggctataccttgccattctgtatcag	Protospacer
 .****** ***** ********** .**. .

38. spacer 4.9|3133070|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010095 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB47, complete sequence) position: , mismatch: 9, identity: 0.719

actaacgggtatacgttgccattcttcattca	CRISPR spacer
tttaacggctataccttgccattctgtatcag	Protospacer
 .****** ***** ********** .**. .

39. spacer 4.9|3133070|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR matches to MK843319 (Bacillus phage vB_BthS-TP21T, complete genome) position: , mismatch: 9, identity: 0.719

actaacgggtatacgttgccattcttcattca	CRISPR spacer
tttaacggctataccttgccattctgtatcag	Protospacer
 .****** ***** ********** .**. .

40. spacer 4.9|3133070|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR matches to KT970646 (Bacillus phage phiS58, complete genome) position: , mismatch: 9, identity: 0.719

actaacgggtatacgttgccattcttcattca	CRISPR spacer
tttaacggctataccttgccattctgtatcag	Protospacer
 .****** ***** ********** .**. .

41. spacer 4.9|3133070|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR matches to HE614281 (Staphylococcus phage SpaA1 complete genome) position: , mismatch: 9, identity: 0.719

actaacgggtatacgttgccattcttcattca	CRISPR spacer
tttaacggctataccttgccattctgtatcag	Protospacer
 .****** ***** ********** .**. .

42. spacer 4.9|3133070|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR matches to NC_018277 (Staphylococcus phage SpaA1, complete genome) position: , mismatch: 9, identity: 0.719

actaacgggtatacgttgccattcttcattca	CRISPR spacer
tttaacggctataccttgccattctgtatcag	Protospacer
 .****** ***** ********** .**. .

43. spacer 4.9|3133070|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR matches to NC_048628 (Bacillus phage BceA1 complete genome) position: , mismatch: 9, identity: 0.719

actaacgggtatacgttgccattcttcattca	CRISPR spacer
tttaacggctataccttgccattctgtatcag	Protospacer
 .****** ***** ********** .**. .

44. spacer 4.9|3133070|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR matches to NC_025424 (Bacillus phage Waukesha92, complete genome) position: , mismatch: 9, identity: 0.719

actaacgggtatacgttgccattcttcattca	CRISPR spacer
tttaacggctataccttgccattctgtatcag	Protospacer
 .****** ***** ********** .**. .

45. spacer 4.10|3133130|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR matches to JX100810 (Caulobacter phage CcrColossus, complete genome) position: , mismatch: 9, identity: 0.719

gtatcagctggcaagacaacgctgatctctat	CRISPR spacer
cccggcgctggcaagaccacgctgatcgctct	Protospacer
 .    *********** ********* ** *

46. spacer 4.12|3133250|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

gctatccgccggcgttatcgctgtcagctgag	CRISPR spacer
gctagccgccggcgatatcgctgacgtgcgga	Protospacer
**** ********* ******** *.  .*..

47. spacer 4.12|3133250|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 9, identity: 0.719

gctatccgccggcgttatcgctgtcagctgag	CRISPR spacer
gctaaccgccggcgatatcgctgacgtgcgga	Protospacer
**** ********* ******** *.  .*..

48. spacer 4.15|3133430|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015644 (Staphylococcus simulans strain MR1 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

agaacatggaatgaatggacttatgtttatga	CRISPR spacer
aagtccattaatgagtggatttatgtttatga	Protospacer
*.. *    *****.****.************

49. spacer 4.15|3133430|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015644 (Staphylococcus simulans strain MR1 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

agaacatggaatgaatggacttatgtttatga	CRISPR spacer
aagtccattaatgagtggatttatgtttatga	Protospacer
*.. *    *****.****.************

50. spacer 4.15|3133430|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017431 (Staphylococcus simulans strain MR4 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

agaacatggaatgaatggacttatgtttatga	CRISPR spacer
aagtccattaatgagtggatttatgtttatga	Protospacer
*.. *    *****.****.************

51. spacer 4.15|3133430|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017429 (Staphylococcus simulans strain MR3 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

agaacatggaatgaatggacttatgtttatga	CRISPR spacer
aagtccattaatgagtggatttatgtttatga	Protospacer
*.. *    *****.****.************

52. spacer 4.15|3133430|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017429 (Staphylococcus simulans strain MR3 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

agaacatggaatgaatggacttatgtttatga	CRISPR spacer
aagtccattaatgagtggatttatgtttatga	Protospacer
*.. *    *****.****.************

53. spacer 4.15|3133430|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016158 (Staphylococcus simulans strain MR2 plasmid unnamed1) position: , mismatch: 9, identity: 0.719

agaacatggaatgaatggacttatgtttatga	CRISPR spacer
aagtccattaatgagtggatttatgtttatga	Protospacer
*.. *    *****.****.************

54. spacer 3.1|2450165|42|NZ_CP015379|CRISPRCasFinder matches to NZ_CP036488 (Rahnella aquatilis strain MEM40 plasmid pMEM40-1, complete sequence) position: , mismatch: 10, identity: 0.762

taaatctcgatcagctcctccccctgcgaagggggaggttgg	CRISPR spacer
tggtatttgacctgctcctccccctgcgaagggggaggcggg	Protospacer
*..  .*.**.* *************************. **

55. spacer 3.1|2450165|42|NZ_CP015379|CRISPRCasFinder matches to NZ_CP032297 (Rahnella aquatilis strain ZF7 plasmid pRAZF7, complete sequence) position: , mismatch: 10, identity: 0.762

taaatctcgatcagctcctccccctgcgaagggggaggttgg	CRISPR spacer
tggtatttgacctgctcctccccctgcgaagggggaggcggg	Protospacer
*..  .*.**.* *************************. **

56. spacer 3.1|2450165|42|NZ_CP015379|CRISPRCasFinder matches to NC_017060 (Rahnella aquatilis HX2 plasmid PRA1, complete sequence) position: , mismatch: 10, identity: 0.762

taaatctcgatcagctcctccccctgcgaagggggaggttgg	CRISPR spacer
tggtatttgacctgctcctccccctgcgaagggggaggcggg	Protospacer
*..  .*.**.* *************************. **

57. spacer 3.1|2450165|42|NZ_CP015379|CRISPRCasFinder matches to NZ_CP034838 (Rahnella aquatilis strain KM12 plasmid pKM12v1, complete sequence) position: , mismatch: 10, identity: 0.762

taaatctcgatcagctcctccccctgcgaagggggaggttgg	CRISPR spacer
tggtatttgacctgctcctccccctgcgaagggggaggcggg	Protospacer
*..  .*.**.* *************************. **

58. spacer 3.1|2450165|42|NZ_CP015379|CRISPRCasFinder matches to NZ_CP034839 (Rahnella aquatilis strain KM25 plasmid pKM12v2, complete sequence) position: , mismatch: 10, identity: 0.762

taaatctcgatcagctcctccccctgcgaagggggaggttgg	CRISPR spacer
tggtatttgacctgctcctccccctgcgaagggggaggcggg	Protospacer
*..  .*.**.* *************************. **

59. spacer 3.1|2450165|42|NZ_CP015379|CRISPRCasFinder matches to NZ_CP034837 (Rahnella aquatilis strain KM05 plasmid pKM05, complete sequence) position: , mismatch: 10, identity: 0.762

taaatctcgatcagctcctccccctgcgaagggggaggttgg	CRISPR spacer
tggtatttgacctgctcctccccctgcgaagggggaggcggg	Protospacer
*..  .*.**.* *************************. **

60. spacer 3.1|2450165|42|NZ_CP015379|CRISPRCasFinder matches to NC_015062 (Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence) position: , mismatch: 10, identity: 0.762

taaatctcgatcagctcctccccctgcgaagggggaggttgg	CRISPR spacer
tggtatttgacctgctcctccccctgcgaagggggaggcggg	Protospacer
*..  .*.**.* *************************. **

61. spacer 4.9|3133070|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR matches to FJ982340 (Burkholderia phage KS9, complete genome) position: , mismatch: 10, identity: 0.688

actaacgggtatacgttgccattcttcattca	CRISPR spacer
gtgatcgtgtatacgttgccgttcttcaccgg	Protospacer
.. * ** ************.*******.. .

62. spacer 4.10|3133130|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013562 (Rhizobium phaseoli strain N841 plasmid pRphaN841e, complete sequence) position: , mismatch: 10, identity: 0.688

gtatcagctggcaagacaacgctgatctctat	CRISPR spacer
aacggcgctggcaagacgacgctgctctccgt	Protospacer
.     ***********.****** ****..*

63. spacer 4.10|3133130|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012399 (Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence) position: , mismatch: 10, identity: 0.688

gtatcagctggcaagacaacgctgatctctat	CRISPR spacer
tcgggcgccggcaagacgacgctgatctcgct	Protospacer
 ..   **.********.***********  *

64. spacer 4.10|3133130|32|NZ_CP015379|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 11, identity: 0.656

gtatcagctggcaagacaacgctgatctctat	CRISPR spacer
tcgggcgccggcaagacgacgctgatctcctc	Protospacer
 ..   **.********.***********. .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2553 : 11178 15 Salmonella_phage(50.0%) NA NA
DBSCAN-SWA_2 674641 : 684732 6 uncultured_Mediterranean_phage(33.33%) NA NA
DBSCAN-SWA_3 2983329 : 2995325 14 Enterobacteria_phage(33.33%) integrase attL 2982940:2982963|attR 2994261:2994284
DBSCAN-SWA_4 3243775 : 3252300 8 Catovirus(16.67%) NA NA
DBSCAN-SWA_5 3517945 : 3545332 31 Salmonella_phage(28.57%) holin,terminase,tail,integrase attL 3517413:3517426|attR 3525554:3525567
DBSCAN-SWA_6 3588172 : 3704520 123 Escherichia_phage(33.33%) capsid,lysis,plate,portal,terminase,holin,head,integrase,tail,protease attL 3618406:3618422|attR 3714166:3714182
DBSCAN-SWA_7 3916023 : 3930114 14 Tupanvirus(22.22%) tRNA NA
DBSCAN-SWA_8 4280287 : 4348982 65 Escherichia_phage(30.0%) coat,plate,head,integrase,tail attL 4281746:4281773|attR 4302757:4302784
DBSCAN-SWA_9 4458489 : 4542727 82 Salmonella_phage(40.0%) capsid,lysis,plate,tRNA,portal,terminase,head,tail,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage