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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP014209 Isoptericola dokdonensis DS-3, complete genome 8 crisprs PD-DExK,DEDDh,WYL,csa3,DinG,cas3 6 6 2 0

Results visualization

1. NZ_CP014209
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014209_1 14611-14690 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014209_2 953194-953535 Orphan NA
8 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014209_3 1101746-1101822 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014209_4 1927282-1927373 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014209_5 2207991-2208082 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014209_6 3081871-3081956 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014209_7 3182240-3182318 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014209_8 3328148-3328301 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP014209_2 2.4|953332|18|NZ_CP014209|CRT 953332-953349 18 NZ_CP014209.1 953092-953109 0 1.0
NZ_CP014209_2 2.5|953368|24|NZ_CP014209|CRT 953368-953391 24 NZ_CP014209.1 953092-953115 0 1.0
NZ_CP014209_2 2.6|953410|24|NZ_CP014209|CRT 953410-953433 24 NZ_CP014209.1 953134-953157 0 1.0
NZ_CP014209_2 2.7|953452|24|NZ_CP014209|CRT 953452-953475 24 NZ_CP014209.1 953134-953157 0 1.0
NZ_CP014209_2 2.8|953494|24|NZ_CP014209|CRT 953494-953517 24 NZ_CP014209.1 953134-953157 0 1.0
NZ_CP014209_4 4.1|1927314|28|NZ_CP014209|CRISPRCasFinder 1927314-1927341 28 NZ_CP014209.1 1240284-1240311 2 0.929

1. spacer 2.4|953332|18|NZ_CP014209|CRT matches to position: 953092-953109, mismatch: 0, identity: 1.0

cggagcccgacggacgac	CRISPR spacer
cggagcccgacggacgac	Protospacer
******************

2. spacer 2.5|953368|24|NZ_CP014209|CRT matches to position: 953092-953115, mismatch: 0, identity: 1.0

cggagcccgacggacgaccaccac	CRISPR spacer
cggagcccgacggacgaccaccac	Protospacer
************************

3. spacer 2.6|953410|24|NZ_CP014209|CRT matches to position: 953134-953157, mismatch: 0, identity: 1.0

ccgaacccgacggacgaccaccac	CRISPR spacer
ccgaacccgacggacgaccaccac	Protospacer
************************

4. spacer 2.7|953452|24|NZ_CP014209|CRT matches to position: 953134-953157, mismatch: 0, identity: 1.0

ccgaacccgacggacgaccaccac	CRISPR spacer
ccgaacccgacggacgaccaccac	Protospacer
************************

5. spacer 2.8|953494|24|NZ_CP014209|CRT matches to position: 953134-953157, mismatch: 0, identity: 1.0

ccgaacccgacggacgaccaccac	CRISPR spacer
ccgaacccgacggacgaccaccac	Protospacer
************************

6. spacer 4.1|1927314|28|NZ_CP014209|CRISPRCasFinder matches to position: 1240284-1240311, mismatch: 2, identity: 0.929

tgaacttcgttcaatcagcgctcgtcgg	CRISPR spacer
tgaacttcgttcagtcagcgctcatcgg	Protospacer
*************.*********.****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP014209_2 2.6|953410|24|NZ_CP014209|CRT 953410-953433 24 NZ_CP029357 Azospirillum sp. CFH 70021 plasmid unnamed2 268060-268083 2 0.917
NZ_CP014209_2 2.7|953452|24|NZ_CP014209|CRT 953452-953475 24 NZ_CP029357 Azospirillum sp. CFH 70021 plasmid unnamed2 268060-268083 2 0.917
NZ_CP014209_2 2.8|953494|24|NZ_CP014209|CRT 953494-953517 24 NZ_CP029357 Azospirillum sp. CFH 70021 plasmid unnamed2 268060-268083 2 0.917
NZ_CP014209_2 2.5|953368|24|NZ_CP014209|CRT 953368-953391 24 NC_006462 Thermus thermophilus HB8 plasmid pTT27, complete sequence 69544-69567 3 0.875
NZ_CP014209_2 2.5|953368|24|NZ_CP014209|CRT 953368-953391 24 NZ_AP019802 Thermus thermophilus strain HC11 plasmid pHC11, complete sequence 193783-193806 3 0.875
NZ_CP014209_2 2.1|953212|24|NZ_CP014209|CRT 953212-953235 24 NZ_CP039845 Acetobacter pasteurianus strain CICC 22518 plasmid pAP22518-1, complete sequence 14213-14236 4 0.833
NZ_CP014209_2 2.3|953290|24|NZ_CP014209|CRT 953290-953313 24 NZ_CP039845 Acetobacter pasteurianus strain CICC 22518 plasmid pAP22518-1, complete sequence 14213-14236 4 0.833
NZ_CP014209_2 2.5|953368|24|NZ_CP014209|CRT 953368-953391 24 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 3117705-3117728 4 0.833

1. spacer 2.6|953410|24|NZ_CP014209|CRT matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 2, identity: 0.917

ccgaacccgacggacgaccaccac	CRISPR spacer
ccgatcccgacggacgaccaccgc	Protospacer
**** *****************.*

2. spacer 2.7|953452|24|NZ_CP014209|CRT matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 2, identity: 0.917

ccgaacccgacggacgaccaccac	CRISPR spacer
ccgatcccgacggacgaccaccgc	Protospacer
**** *****************.*

3. spacer 2.8|953494|24|NZ_CP014209|CRT matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 2, identity: 0.917

ccgaacccgacggacgaccaccac	CRISPR spacer
ccgatcccgacggacgaccaccgc	Protospacer
**** *****************.*

4. spacer 2.5|953368|24|NZ_CP014209|CRT matches to NC_006462 (Thermus thermophilus HB8 plasmid pTT27, complete sequence) position: , mismatch: 3, identity: 0.875

cggagcccgacggacgaccaccac	CRISPR spacer
gggagccccacggacgacccccac	Protospacer
 ******* ********** ****

5. spacer 2.5|953368|24|NZ_CP014209|CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 3, identity: 0.875

cggagcccgacggacgaccaccac	CRISPR spacer
gggagccccacggacgacccccac	Protospacer
 ******* ********** ****

6. spacer 2.1|953212|24|NZ_CP014209|CRT matches to NZ_CP039845 (Acetobacter pasteurianus strain CICC 22518 plasmid pAP22518-1, complete sequence) position: , mismatch: 4, identity: 0.833

ggtagccaccaccagaaggcctgc	CRISPR spacer
aagggccaccaccagaaggcctgc	Protospacer
.. .********************

7. spacer 2.3|953290|24|NZ_CP014209|CRT matches to NZ_CP039845 (Acetobacter pasteurianus strain CICC 22518 plasmid pAP22518-1, complete sequence) position: , mismatch: 4, identity: 0.833

ggtagccaccaccagaaggcctgc	CRISPR spacer
aagggccaccaccagaaggcctgc	Protospacer
.. .********************

8. spacer 2.5|953368|24|NZ_CP014209|CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 4, identity: 0.833

cggagcccgacggacgaccaccac	CRISPR spacer
cggagcccgacgaacgaccacggt	Protospacer
************.******** ..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1986675 : 2027926 44 Streptomyces_phage(29.41%) head,portal,protease,terminase,capsid NA
DBSCAN-SWA_2 2033971 : 2044180 16 Arthrobacter_phage(80.0%) integrase attL 2037714:2037732|attR 2044444:2044462
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage