CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP015081	Deinococcus radiodurans R1 chromosome 1, complete sequence	1 crisprs	WYL,cas14j,c2c9_V-U4,csa3,DEDDh	0	0	2
NZ_CP015083	Deinococcus radiodurans R1 plasmid MP1, complete sequence	2 crisprs	NA	1	3	2
NZ_CP015082	Deinococcus radiodurans R1 chromosome 2, complete sequence	0 crisprs	csa3	0	0	0
NZ_CP015084	Deinococcus radiodurans R1 plasmid CP1, complete sequence	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015081_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015081_1

126331-126419

Orphan

Consensus_repeat	Method
GGGTGAGGGTCACGTCCTTGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015081_1

>merge|NZ_CP015081|1|126331-126419|CRISPRCasFinder
GGGTGAGGGTCACGTCCTTGCCGTCCACCTGCCCGCCGATGCGCCCGCTGAGCTGCTCGCCGCGCCGGGTGAGGGTCACGTCCTTGCCC

>NZ_CP015081|1|1|126331-126419|CRISPRCasFinder
GGGTGAGGGTCACGTCCTTGCCG	TCCACCTGCCCGCCGATGCGCCCGCTGAGCTGCTCGCCGCGCC
GGGTGAGGGTCACGTCCTTGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015081.1\|WP_010889224.1\|118203_119247_-\|CAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|225218
NZ_CP015081.1\|WP_010889222.1\|120869_121325_+\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|223509
NZ_CP015081.1\|WP_149357984.1\|120635_120938_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015081.1\|WP_027480271.1\|117955_118192_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015081.1\|WP_010889218.1\|124703_126167_-\|magnesium-chelatase	unknown	unknown	gnl\|CDD\|224160
NZ_CP015081.1\|WP_010889219.1\|123501_124512_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235736
NZ_CP015081.1\|WP_010889225.1\|117174_117918_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226222
NZ_CP015081.1\|WP_010889210.1\|132046_132304_-\|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl\|CDD\|224636
NZ_CP015081.1\|WP_010889209.1\|132321_133026_+\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|224766
NZ_CP015081.1\|WP_010889216.1\|126778_127741_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015081.1\|WP_010889221.1\|121371_122442_+\|nitric-oxide-synthase-oxygenase	unknown	unknown	gnl\|CDD\|226804
NZ_CP015081.1\|WP_010889208.1\|133150_133828_-\|DNA-3-methyladenine-glycosylase-2-family-protein	unknown	unknown	gnl\|CDD\|223200
NZ_CP015081.1\|WP_010889211.1\|131392_132034_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|223282
NZ_CP015081.1\|WP_010889215.1\|127765_128131_-\|ferredoxin	unknown	unknown	gnl\|CDD\|225945
NZ_CP015081.1\|WP_010889213.1\|129255_130272_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP015081.1\|WP_010889214.1\|128438_129263_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP015081.1\|WP_010889212.1\|130268_131276_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238563
NZ_CP015081.1\|WP_010889223.1\|119256_120702_-\|DUF4403-family-protein	unknown	unknown	gnl\|CDD\|379578
NZ_CP015081.1\|WP_010889220.1\|122503_123445_+\|neutral-zinc-metallopeptidase	unknown	unknown	gnl\|CDD\|282131
NZ_CP015081.1\|WP_010889207.1\|133860_135597_-\|NAD-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|237414

Protein	Function_ID	Function_description	E-value
NZ_CP015081.1\|WP_010889224.1\|118203_119247_-\|CAP-domain-containing-protein	gnl\|CDD\|225218	COG2340, COG2340, Uncharacterized protein with SCP/PR1 domains [Function unknown].	1.29583e-33
NZ_CP015081.1\|WP_010889222.1\|120869_121325_+\|YjbQ-family-protein	gnl\|CDD\|223509	COG0432, COG0432, Uncharacterized conserved protein [Function unknown].	6.14571e-63
NZ_CP015081.1\|WP_010889214.1\|128438_129263_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	4.5331e-101
NZ_CP015081.1\|WP_010889225.1\|117174_117918_-\|hypothetical-protein	gnl\|CDD\|226222	COG3698, COG3698, Predicted periplasmic protein [Function unknown].	2.07137e-128
NZ_CP015081.1\|WP_010889218.1\|124703_126167_-\|magnesium-chelatase	gnl\|CDD\|224160	COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism].	1.25577e-118
NZ_CP015081.1\|WP_010889219.1\|123501_124512_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|235736	PRK06196, PRK06196, oxidoreductase; Provisional.	1.22458e-168
NZ_CP015081.1\|WP_010889209.1\|132321_133026_+\|flavin-reductase-family-protein	gnl\|CDD\|224766	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only].	1.58319e-37
NZ_CP015081.1\|WP_010889210.1\|132046_132304_-\|exodeoxyribonuclease-VII-small-subunit	gnl\|CDD\|224636	COG1722, XseB, Exonuclease VII small subunit [DNA replication, recombination, and repair].	7.5695e-16
NZ_CP015081.1\|WP_010889221.1\|121371_122442_+\|nitric-oxide-synthase-oxygenase	gnl\|CDD\|226804	COG4362, COG4362, Nitric oxide synthase, oxygenase domain [Inorganic ion transport and metabolism / Amino acid transport and metabolism].	0
NZ_CP015081.1\|WP_010889208.1\|133150_133828_-\|DNA-3-methyladenine-glycosylase-2-family-protein	gnl\|CDD\|223200	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair].	4.96833e-59
NZ_CP015081.1\|WP_010889211.1\|131392_132034_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|223282	COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism].	2.58005e-40
NZ_CP015081.1\|WP_010889220.1\|122503_123445_+\|neutral-zinc-metallopeptidase	gnl\|CDD\|282131	pfam04228, Zn_peptidase, Putative neutral zinc metallopeptidase. Members of this family have a predicted zinc binding motif characteristic of neutral zinc metallopeptidases (Prosite:PDOC00129).	7.0353e-154
NZ_CP015081.1\|WP_010889213.1\|129255_130272_-\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	4.36929e-79
NZ_CP015081.1\|WP_010889212.1\|130268_131276_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238563	cd01143, YvrC, Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	2.88468e-72
NZ_CP015081.1\|WP_010889223.1\|119256_120702_-\|DUF4403-family-protein	gnl\|CDD\|379578	pfam14356, DUF4403, Domain of unknown function (DUF4403). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 455 and 518 amino acids in length. There is a single completely conserved residue W that may be functionally important.	3.13986e-118
NZ_CP015081.1\|WP_010889215.1\|127765_128131_-\|ferredoxin	gnl\|CDD\|225945	COG3411, COG3411, Ferredoxin [Energy production and conversion].	5.51703e-24
NZ_CP015081.1\|WP_010889207.1\|133860_135597_-\|NAD-dependent-malic-enzyme	gnl\|CDD\|237414	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase.	0

>NZ_CP015081.1|WP_010889218.1|124703_126167_-|magnesium-chelatase
MTAQTTAQPKARTLGELLQTPEYAGRKPFDGQRRLVQDEVRDNLTRKLRSGEELFPGVVGYDDTVIPQLVNALLARQNFILLGLRGQAKSRILRAITELLDPEVPVIDGVDMPDDPLNPIGAEGQHLLEAHGMELPIRWLPRADRYVEKLATPDVTVADLIGDVDPIKAARLGTSLGDTRSMHFGLLPRANRGIFAVNELADLSPKVQVALFNILQEGDVQIKGYPIRLELDVMLVFSANPEDYTARGKIVTPLKDRIGSEIRTHYPTDVQLGMDITAQEAVKEEGVVVPPFIAELIEDIAFQAREDGRIDKLSGVSQRLPISLMELACANAERRSLVSGDAPVVRVTDVYAGLPAITGKMELEYEGELKGADNVAKDLIRKAAGAAYARSYGSADTRELEKWFDQGNVFRFPQGGDASAALKATGEVPGLSDFAAQVAGSSDDAVRVSAAEFILEGLYGRKKLSRAEELYAAPEPELKRERGGRWN
>NZ_CP015081.1|WP_010889219.1|123501_124512_+|SDR-family-NAD(P)-dependent-oxidoreductase
MARRRLPSMTHGNSSQSDRPRIISPLAPRADAAEVVRGVDLKGKTAVVTGGASGLGTETARALLLAGAHVILPVRDRAKGERVAAELRQSTGGTVELVDLDLGSLASVRRGAAEIRQLAPRIHILINNAGVMATPQSRTVDGFETQFGTNHLGHFLLTRELLPALMAAAPARVVALTSSGHRRSDIVWDDLNFERRPYDPWDAYGQSKTANALFAVGLTQRYADQGLTANAVHPGGIMTGLQKFVPLEDQRRMGWQDEHGTLNPVFKTPAEGASTSVWAATSPQLYGVGGLFLEDLQHSTPLDESAPNPLFGYKPYALDHESARRLWALSEALVGE
>NZ_CP015081.1|WP_010889220.1|122503_123445_+|neutral-zinc-metallopeptidase
MAQGTVSQRASLFSTPNRSPHMDWRNLPGGGNIEDRRGGGGLPGGGLAVGGGIGGLILALIAYFFGIDPSVVTGGGQQQSPAQTQAQSQAQGGQAEDEDYQFADRIVASTDRTWTQIFQQSNRQYTKPTLVLFSRSVSSACGQASSATGPFYCPLDSKLYLDTSFFNLMQRQLGGGGDFAYSYVIAHEVGHHVQNELGIAEQVERKQRAARSEAEQNSYSVRLELQADCFAGVWGNSVKGREAANLTEDDVREAINTAAAIGDDTLQRQGQGMVVPDSFTHGTSQQRVNWFMRGFQTGNPNQCDTFSAAYNQL
>NZ_CP015081.1|WP_010889221.1|121371_122442_+|nitric-oxide-synthase-oxygenase
MSCPAAAVLTPDMRAFLRRFHEEMGEPGLPARLRAVEEAGLWWPTSAELTWGAKVAWRNSTRCVGRLYWEALSVRDLRELNTAQAVYEALLQHLDDAFCGGHIRPVISVFGPGVRLHNPQLIRYADDPINADFVDKLRRFGWQPRGERFEVLPLLIEVNGRAELFSLPPQAVQEVAITHPVCLGIGELGLRWHALPVISDMHLDIGGLHLPCAFSGWYVQTEIAARDLADVGRYDQLPAVARALGLDTSRERTLWRDRALVELNVAVLHSFDAAGVKLADHHTVTAHHVRFEEREARAGREVRGKWSWLVPPLSPATTPLWSRRYRAREESPRFVRARCPFHTPTVHASTGHAPTG
>NZ_CP015081.1|WP_010889222.1|120869_121325_+|YjbQ-family-protein
MPYPFPMWTQHQLTLPPQRRGFHLITREVVAAVPELAGVQVGLLHVWIQHTSASLTVNENASPDVRRDFERYFNHAVPDGWREFEHTLEGPDDMAAHIKASVLGPSLLLPVSGGRLALGRWQGIFLCEHRDHASARRLVLTLQGEEKQAGK
>NZ_CP015081.1|WP_149357984.1|120635_120938_-|hypothetical-protein
MKTAPLRRQGELVLGPHGERVGHRPGQAQRVGFSAGRLFSPLHPLEQVSELRVRRKGTATRSILRPALRFALALLAKKRCPLFVKCSTLAPCAAFSPRCC
>NZ_CP015081.1|WP_010889223.1|119256_120702_-|DUF4403-family-protein
MPSFCQMLYPRPMRRVLTPLLLTLGMTLPAALPTAEAASTLTVPVHVPLAGVQQAANAQVPQEFARVDQTQSLLGGAVQVRVRGTVTRTAQVSVKADGDALVLSVPIRAEFRAEPGGALASLARNFGGAATITLRLTPYVTPTWEVGVRASAEHRWTDPLAVDLGRGLKLSVQSLVDPQVRAQLDKLTAQIEQQVREGADLRRRAGTLWARAQRPWPLPTPEPAYALVRPLGLGVTPPRLTPDALKLDVGATLDLGAALGQPPATVKVSPLPPLKVGPLSAPGIELSVPLRLPYPELSALAARYAAQQTLTLPVPGSPVLRVTGVQVQPVGTRLRVSVQARLDGPLGLSLRATTDVTGTPAVSADGRTVSLRDVEVETRREGLTGKAVAWLADARAQAFVTRAAHFDLGPLLARAQAQAQSKLPFTPLPGVMVGGQVGALSVQSMAVQPAALVVTARAAGRLQAQVNAGELVDSGRGNGGR
>NZ_CP015081.1|WP_010889224.1|118203_119247_-|CAP-domain-containing-protein
MRRLSLLLVALLGGVAPLARAQVQVIPFPGPAPAPVAPAPAPVPPPPPSAPAAAPALPVAPAPAPVAQSTCAPALPALHLAAADIAAGADAYRAVTNRAGAPSQFRYWKVSPAQLPATVRELCQRGFVGYGTAPSGSLMIVLGARWPGGTPAEASAPASPVAAAPAPVAAAPVVLAPAAPAPAAPAPSSRPPTSPTLSSPPVTAAAPAAPVPGPLGELLAGINAARTQGRRCGGVQRPPVPPLVVDARLSKAAQEHAEAMVAQGFAEHVNPRTRSTPESRARAQGFSGRVSENIRYGTPTVDGALIWWLGSAVHCTSLMSRDWTHMGAGSAVQNDQSSFWVLVLGRE
>NZ_CP015081.1|WP_027480271.1|117955_118192_+|hypothetical-protein
MFSALWTFLRELLLALIGQPSRPGPTRQEQEAELAQREALRGRQAPTSAWDAARQVGAEVGKAAIWQPTDAPRRKKKD
>NZ_CP015081.1|WP_010889225.1|117174_117918_-|hypothetical-protein
MSRFAPATPLLLSLLLTSCSPAQGVRVERITGGGMLYTVATVDPARDQLTLHWLNPATGKPYSSFAQLGSRLGKQGKKLLFATNSGIYMPGPKPLGLHVEGGKTLVGLNNAGKGGGNFALLPNGVFWLRGKKAGVTETQAYRKLGLAPDYATQSGPLLVANGKLHPDFNKSGTSFKVRSGVGVCGGGKVRFAISAGPVNFYSFATFFRDTLGCPDALYLDGSISAYATPDTDTQFTEFAGIWAVTAR
>NZ_CP015081.1|WP_010889216.1|126778_127741_-|hypothetical-protein
MRQPFWQASLVLASLLLGGAQAQGTQAAPVTGAPLFERLSPAERQLLLSVAGVSSGDQFQPGRLLPGLPFPAPALPGQQVIGSVEQSDGIRVVVRTSLEANAAQQTAEKALRAAGWQNLYPGVDNGGLIFQSSPTEQYVSPLCRPGVPGSLTVFAFESEPGSSQVSYQYSSLGAQGCPANMPQEDPTQLNFYAPYRNQTVYRPADRLQERGVKLPRLAAPEGAQVEATNLTSGDTELTAYTSVYGTQSTETLRQHYAAALQAQGWQLVDTRTLAGQSVTRFTFRAGKEEGVGTLSLKARTDLKDTTRPPRHDVQLELQLP
>NZ_CP015081.1|WP_010889215.1|127765_128131_-|ferredoxin
MTNGPKYFRTSGHLLLCRGSSCQQRNSVLLHKALWNALERDGLAYYKQGGSVRLTDSGCLGACKFGPTLCVYRERDGQLEQAWYAGVDFPLARAVAQAVHEGGELPDQGRYGGSPDNAGNP
>NZ_CP015081.1|WP_010889214.1|128438_129263_-|ABC-transporter-ATP-binding-protein
MVEGGEQGREQSAEGAGLLEARGVHVRAGQTLAVRGVDATFRTGEFAAIIGPNGAGKSTLLRALLGLSGLEAGEVRLNGRPLRTWNRAERSRRLAYLAQSEPLPPETRVRDVVTLGRGAGEWRWGLLPTRPWSEADEEAVNRALDRTDTRRFEDRRVSELSGGEGQRVALARALAAGPELLLLDEPTNHLDLAYTLDLMRSLRREVEAGLGVIAVLHDLNLAARADRLLLLSRGEVLATGTPAEVLTPEHIAAAYGVRVDVTEQAGRPLVIPAD
>NZ_CP015081.1|WP_010889213.1|129255_130272_-|iron-ABC-transporter-permease
MIPAAMSLSARRSRVYLASGTALLLALLGLAVVLGTGLGSVNIAPGAVLTALWQGVTRQALAGDAVIIWQIRLPRVVMGVLVGAALSVCGGAFQGVFRNPLSDPYLLGVASGAGLGATVALTLGWPHALIPLAALLTALGAVAATLLLAREGRRFPPTRLILSGVVVGSVLSAATTALMLRGEDRARQVLAYTLGDLSFSGWRDVLTVLPYVGLGCGALLLLARALDTLQLGDLTARSLGVPVERLRLLVVACASLATAGAVAYVGIIGFVGLIVPHLVRLAFGAGHRTLLPLSGLLGGSLLVLADLLARTTPLSQVGIVTTLLGGPFFLWLLRRERG
>NZ_CP015081.1|WP_010889212.1|130268_131276_-|ABC-transporter-substrate-binding-protein
MAGSVRPDLSRKEGPPVSLLFFTVVLFAASHPGGRFFWWPRKETKMRTFSALLLTLSAGLATSASAVRYPLTLTDDLGRKVTIKAEPQRLISVLPSTSETLCAIGACNKLVGVDDYSDFPAQVAKLPKVGGLYDPNVEKIVSLKPDLVIVSKYGKLTEQLEQLGVPTVAVNPETYADVFSKTTLLGKIVNREAQAKALNISMQREIARVEILTKNAARKPLTYFEIDPTPYSIGPNSFMGVLLTKAGARNVIPASLGDFPKIDPELIVKQNPQLILGTDLKTASARPGWQNVAAVKSGKVIAIPKELNTILGRPGPRLPQALRGLAKIVHPELFR
>NZ_CP015081.1|WP_010889211.1|131392_132034_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MLWSMTDGATPATPPTAAPEERFPHVNPLVYRFVVDVTFLPVLLTGMHIDVHGREHVPPPGTPLVVAANHQSALDPFLIARALPPGRYLQFMAKRELFVPVIGDIIRAGGSFPVDRESNDVGAIRTSLRILKAGGTVGIFPQGTRGGQELHGGAALIAARGRAPILPAGISHDGKRWVVRFGEPLPARGGIKANTEELGRRLQVLAQPVGRHL
>NZ_CP015081.1|WP_010889210.1|132046_132304_-|exodeoxyribonuclease-VII-small-subunit
MLYAGAMSAPTSYRDAYARLSRIAAELETGEADLDRVLPLLEEARAAYAECKGRIEAVRGVLSGDWGQDAAQDPEEGEEDEDDAF
>NZ_CP015081.1|WP_010889209.1|132321_133026_+|flavin-reductase-family-protein
MPQYPAPMSHTHFDLTALPQSARYKLLTATVVPRPIAWVGTRGSGETGKLGFNLAPYSFFGLMGSEPPVVAFAPGDRADGTPKDSALNIGSGGEFTVSLVSAALAAVMNLSATDFPRGMDEAQALGIQLAPGRRVQVPHVAAAPAALECREVQTVSIGRTRIILGEVLGLWLREDAVLDAEKHHVDTAALDLVGRMGGRGTYTHTRDTFELGRLTYAQWQEQWQAREEGDHSEK
>NZ_CP015081.1|WP_010889208.1|133150_133828_-|DNA-3-methyladenine-glycosylase-2-family-protein
MRGGALHQNRRVTLPSVPLPAVLPPLTDHAGAVAHLSRDPVLAQVTSLCGELPVLAPTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGGVVPAALLKVSGDDLRGVGLSWAKVRTVQAAAAAAVSGQIDFAHLSGQPDELVIAELVQLPGIGRWTAEMFLLFALARPDVFSSGDLALRQGVERLYPGEDWRDVTARWAPYRSLASRYLWANSARMQAGGAPL
>NZ_CP015081.1|WP_010889207.1|133860_135597_-|NAD-dependent-malic-enzyme
MPKSPPVSRYYDVKRDEQGQRYIEVKVTGLALLQNPLLNKTTGFTPEERRELGLEGLIPPHISSFEEQKHRTYLRYLEAPTDLARHEYLRALQDRNEVLYYAILEDHLEEMLPIIYTPTVGEAVKLYSNNYRYPRGFTVSTNDIERVEEMLDNVTVNDVRMIVATDSSAILGIGDQGFGGMAISIGKLSLYTAAGGVGPDKTLPVELDVGTNRQDLIDDPLYLGVHHRRWQGQQYDEFVDAFVEAVSARYPKAIIQWEDFSRGTAFRVLERYRKVVPSFNDDIQGTGAMALAGLLRASRMKGEFLTEQVFVVVGAGAAGIGVASAIRQGLEAEGLAPEEAGRRVYVVDRYGLLMEGQPDLEPQQMPFVRRRGDLEGWTFGGEYPTLHEVLVHARATALLGFTGVPGLFRQEDIEAMLAHTPRPIVFPLSNPSSHVEARPSDIVAWTRGGAIVATGSPFPDVPYDNERIPVGQGNNAFIFPGLGFGAVVSRAREITDNMVMAAALTLAEYTTQHHPHLVYPPISELRELSIHVAVRVAEQAIQDGVCAERRVRNMDREQLAALIRERAWLPRPLPLRRE

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2107939 : 2117133

Bacillus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010887250.1\|2107939_2108623_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.9e-10	30.2
WP_010887249.1\|2108636_2109203_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_010887248.1\|2109199_2110846_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_010887247.1\|2110842_2111439_+	histidine phosphatase family protein	A0A1X9IGJ2	Lactococcus_phage	3.1e-07	31.2
WP_081816010.1\|2111440_2113171_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.9e-53	41.2
WP_010887245.1\|2113436_2113676_+	hypothetical protein	NA	NA	NA	NA
WP_010887244.1\|2113815_2114655_+	AAC(3) family N-acetyltransferase	O64018	Bacillus_phage	1.8e-61	50.0
WP_010887243.1\|2114755_2115349_-	M23 family metallopeptidase	A0A0Y0AH42	Bacillus_phage	7.4e-09	39.1
WP_010887242.1\|2115405_2116074_+	SCO family protein	NA	NA	NA	NA
WP_010887241.1\|2116131_2117133_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	4.4e-06	31.6

DBSCAN-SWA_2

2420922 : 2430123

Paramecium_bursaria_Chlorella_virus(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010886947.1\|2420922_2422851_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1HVL7	Paramecium_bursaria_Chlorella_virus	2.3e-112	40.5
WP_010886946.1\|2423232_2423529_+	hypothetical protein	NA	NA	NA	NA
WP_027480282.1\|2423525_2424626_+\|protease	serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	5.2e-08	22.7
WP_010886944.1\|2424708_2425326_+	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	5.0e-08	24.5
WP_010886943.1\|2425325_2425949_+	deoxynucleoside kinase	C1KFI3	Lactobacillus_virus	9.7e-20	31.3
WP_010886942.1\|2426024_2427497_+	UDP-N-acetylmuramyl-tripeptide synthetase	NA	NA	NA	NA
WP_010886941.1\|2427540_2427837_+	hypothetical protein	NA	NA	NA	NA
WP_010886940.1\|2427833_2428682_+	phosphoprotein phosphatase	A0A2H4PRN7	Proteus_phage	2.0e-07	25.0
WP_010886939.1\|2428734_2430123_+	nicotinate phosphoribosyltransferase	A0A1B0V392	Roseobacter_phage	5.0e-125	51.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP015083

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015083_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015083_1

34198-34276

Orphan

Consensus_repeat	Method
GACTTGTAAAGCTGCGAAGCAGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015083_1

>merge|NZ_CP015083|1|34198-34276|CRISPRCasFinder
GACTTGTAAAGCTGCGAAGCAGAGCGGAGCGAGAGGCAAAAGAGACGTGCTGCGGGACTTGCAAAGCTGCGAAGCAGAG

>NZ_CP015083|1|1|34198-34276|CRISPRCasFinder
GACTTGTAAAGCTGCGAAGCAGAG	CGGAGCGAGAGGCAAAAGAGACGTGCTGCGG
GACTTGCAAAGCTGCGAAGCAGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015083.1\|WP_010884007.1\|28611_29013_+\|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM	unknown	unknown	gnl\|CDD\|225946
NZ_CP015083.1\|WP_010884044.1\|47776_49852_-\|DUF11-domain-containing-protein	unknown	unknown	unknown
NZ_CP015083.1\|WP_081816081.1\|27976_28615_+\|dihydroxyacetone-kinase-subunit-L	unknown	unknown	gnl\|CDD\|274099
NZ_CP015083.1\|WP_010884048.1\|33506_33965_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015083.1\|WP_010884019.1\|23163_24147_-\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP015083.1\|WP_027480382.1\|34384_36151_-\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|224699
NZ_CP015083.1\|WP_010884076.1\|36223_36499_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015083.1\|WP_027480379.1\|27023_28022_+\|dihydroxyacetone-kinase-subunit-DhaK	unknown	unknown	gnl\|CDD\|237724
NZ_CP015083.1\|WP_149358002.1\|24674_25190_-\|transposase	unknown	unknown	gnl\|CDD\|225949
NZ_CP015083.1\|WP_155896399.1\|38323_38491_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015083.1\|WP_010884043.1\|51264_52221_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015083.1\|WP_010884006.1\|36554_38105_-\|sensor-domain-containing-diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP015083.1\|WP_010884049.1\|31657_32866_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223650
NZ_CP015083.1\|WP_010884004.1\|39874_41611_+\|SgrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226909
NZ_CP015083.1\|WP_051618918.1\|41639_44453_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015083.1\|WP_010884046.1\|44900_47171_-\|DUF11-domain-containing-protein	unknown	unknown	gnl\|CDD\|307488
NZ_CP015083.1\|WP_010884050.1\|29303_31448_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015083.1\|WP_010884017.1\|32862_33510_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NZ_CP015083.1\|WP_010884005.1\|38563_39862_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340887
NZ_CP015083.1\|WP_010884051.1\|26033_26564_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP015083.1\|WP_010884007.1\|28611_29013_+\|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM	gnl\|CDD\|225946	COG3412, COG3412, Uncharacterized protein conserved in bacteria [Function unknown].	2.14118e-46
NZ_CP015083.1\|WP_010884006.1\|36554_38105_-\|sensor-domain-containing-diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.54873e-33
NZ_CP015083.1\|WP_149358002.1\|24674_25190_-\|transposase	gnl\|CDD\|225949	COG3415, COG3415, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.58205e-26
NZ_CP015083.1\|WP_010884019.1\|23163_24147_-\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.15912e-13
NZ_CP015083.1\|WP_027480382.1\|34384_36151_-\|alkaline-phosphatase	gnl\|CDD\|224699	COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and metabolism].	1.2414e-164
NZ_CP015083.1\|WP_081816081.1\|27976_28615_+\|dihydroxyacetone-kinase-subunit-L	gnl\|CDD\|274099	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the subunit homologous to the E. coli YcgS subunit.	1.40088e-73
NZ_CP015083.1\|WP_027480379.1\|27023_28022_+\|dihydroxyacetone-kinase-subunit-DhaK	gnl\|CDD\|237724	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional.	0
NZ_CP015083.1\|WP_010884005.1\|38563_39862_-\|MFS-transporter	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.57899e-77
NZ_CP015083.1\|WP_010884046.1\|44900_47171_-\|DUF11-domain-containing-protein	gnl\|CDD\|307488	pfam01345, DUF11, Domain of unknown function DUF11. A domain of unknown function found in multiple copies in several archaebacterial proteins. Conserved N-terminal lysine and C-terminal asparagine with central asp/glu suggests that many of these domain may contain an isopeptide bond.	2.23601e-15
NZ_CP015083.1\|WP_010884049.1\|31657_32866_-\|ABC-transporter-permease	gnl\|CDD\|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	5.61897e-14
NZ_CP015083.1\|WP_010884004.1\|39874_41611_+\|SgrR-family-transcriptional-regulator	gnl\|CDD\|226909	COG4533, COG4533, ABC-type uncharacterized transport system, periplasmic component [General function prediction only].	0
NZ_CP015083.1\|WP_010884017.1\|32862_33510_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	9.21638e-73

>NZ_CP015083.1|WP_010884048.1|33506_33965_-|hypothetical-protein
MNRRTVLKLLGAAPGALWLAPFGRAGAQSAAASLNFNELYGKVTVRGAEYSSKIKALNGRKVTMSGYMAPPLKPKLDFFVLTRQPMSTCPFCTTAADWPADIVLVIMPPGQELEPSVRGLNVTGRLEIGVKRDDETGFVSLVRLYAERVRDA
>NZ_CP015083.1|WP_010884017.1|32862_33510_-|ABC-transporter-ATP-binding-protein
MSRQLSGRNLSIQHGAEVRLTYPDFSWPAGTHLALTGPSGTGKTSLLNAVAGLLRPSTGQLCYGEHDLTALSEAGRDAFRRREVGYVFQDFHLMPGLSAQENVELGLRVAGVRNAGALAQTALRRLDLAGRLQSKPWQLSTGERQRVAIARAVAHRPGLLLVDEPTAHLDRERAAGAMSLLREVATELGATLVVVTHDEAVALSLPEHFRIRGAS
>NZ_CP015083.1|WP_010884049.1|31657_32866_-|ABC-transporter-permease
MRLAWWTALKTLRHRLGALIITVLAVALATATALVVPLVSRQVERGAQDAAQVFDLLVTAKGSGTQAVMSSLFYLDVPIGNVPHSVYQKLLSAPGTRRAVPIALGDNYAGFPVVGTSAQFFDQRLKPAAPPYFRVAQGNIFARVHDAVVGAAAARQSGLKVGSTFRSAHGLGGADTEGGAAPSTHDEPYTVTGILAPTGGPVDRAVLTPIETLWEAHGEAAASKRDVTAVLYSAENLAGIYTTAGQINAGKDAMAVFPGQVFAQARQTLMQGQAAYAGLSVLVLAIAALTVTLSVYTSGLERRRTVALLRALGAGRGTVFALVLLETGLTVTLGALLGIGLSLLVSRVGGNVLGQRLGFTLAAPELTWPLASRALGLIPLGILAALPPALQALRVSPLRHLH
>NZ_CP015083.1|WP_010884050.1|29303_31448_-|hypothetical-protein
MVPETRQSPVRLGLRRHMSATLLACVLFCPHPTQLGRRLFLPSCRRCQMQRLLSTVLVLSLAVGASAQQSNGQVSFTAPKGWAASSSQGGVLQYTHTSAGGVDGALLIGQDMPLPNDPVRWLEQTARSLAGGQALSEQAVQSEQLASGLTALYKVLIGGTPQQPVAYVAALLHNGTSGVLVVFLSSDVENKNALEKDVDAVVESIRLSGKPTQTAGTTAAAGAGAKPAEPNLPTVNPMNAAQFKAAGGNPARQIIPDEFRCYVKRKGDGLSPDLTVQVLPGGTYRTVYGNGTYQINKDRKITWQGGPLNKADGSLDFDDYGQAFSLSDVSEDTQDTSLNFECYQRGPRENVALHNFKLRTPKPGSYSCVLADGQGDRGALEVGADNTYRFGGAAGRYRVDYRSDQDSARSSLTLRGEGDLEESGFYSEDETGLRVFTLTVPTGGDLISRSSTAWTCTAVAKPTPAPSLYGSEKAPAPPQGSGGLNGNFVHNRAGKLVPVLQIGPDFTSSMVLGSECPGNVCWAFAFFNPNGYVYTQEPKVDASEADCTRTYPNGLPRCEVYRVTGNTIQIGDRAPVPFTLTGSGLNLDGQRYDKLQPMDTLILRGSYESLEVTPNLYLGGSTSSLALTFGEGRTFSLSSDRSTTVMVPGATVSNSNRAATLTGTYKFSGNTVELTYRDGRVVRQFAALPVEGGKITPTLLRIGGVTYSPSIDKK
>NZ_CP015083.1|WP_010884007.1|28611_29013_+|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM
MSVTLVIVSHSAKLAEGVAEFVGQMNAGQVELEAVGGTDDGLLGTSATRIHAALERATQAGGEALVLMDLGSARLRSELALDLLREEQRVRVALAEAPLVEGAFLAAFEAATGGDLRTVQAAAEEGGALKKMG
>NZ_CP015083.1|WP_081816081.1|27976_28615_+|dihydroxyacetone-kinase-subunit-L
MGRASGHACAAVGRVNSEQTRQFLELYARKIQAADQHLTELDSAIGDADHGSNMERGMTAVVGTLPASGTPSDLLRSAAMTLISKVGGASGPLYGTALLRAATSMAGKDEWTQDDLQEALEAAYQGLLERGKAQPGDKTMLDVWRPALDALPGGVGAAAQAASSAAEATRDLTARKGRASYLGERSAGHVDPGSVSSALLFEALAEALEQRP
>NZ_CP015083.1|WP_027480379.1|27023_28022_+|dihydroxyacetone-kinase-subunit-DhaK
MKKIMNATADLVRESCEGFAAAHADLVKPQSDPLFLYRTGDLRGRVALISGGGSGHEPLHAGYIGRGMLTAACPGEVFTSPVPDQMLAAIRHTHGGQGALLIVKNYTGDVMNFELAAELAAAEGIEVASVVIGDDVAVQDSTWTAGRRGVGGTVLLEKIAGAAAEAGAELAEVKQVAQIVMDGVRSMGLALTGATVPAAGKPNFTLADDEIELGIGIHGEPGRERQQLRPADELVDALLDPVTADLDLKRGEEVIALTNGMGGTPLLELYVAHGHVVNHLADRGVKVVRHLVGNYVTSLEMQGLSVTLLRASSEQLRLWDAPVVTPALRWGA
>NZ_CP015083.1|WP_010884051.1|26033_26564_-|hypothetical-protein
MNPNLRTGALILASAFAPVVAGGAGQTAPTFAKSAFCQKYQCKLLSTETVAPGLTEQRYFLNAVVSNDPRTVVSTFMRGGQVVGAQYVTGTQDAFFAWNLGKPEPEMFAELVKTVTGKRPTPQFFEGIEDQCSRVYGTEKSAQIPGTTSRLSCVVSQEFSSAHGSGAARLSLRVHR
>NZ_CP015083.1|WP_149358002.1|24674_25190_-|transposase
MPQVWQPNRLTRQQLEERRLAAQPLLNNPEWTTASIAEHFGVKPSTVRVWRVRLSERGSLEATLSSGRPAWLNDAQVAEIIELLQQGPDPERFPDGRWTTERVRDVIGLKFDVWYDHDWIGKLLRRWGFSWQKAEKHAIEQNPEKIDAWLEEELPALEKKGRSWRNDRLGR
>NZ_CP015083.1|WP_010884019.1|23163_24147_-|IS4-family-transposase
MIDAPRVNHHDLSAHMPGMSTPQGKKRRADRTFRDEQLDRGFFIALLVVHLPPGKVLLSLDRTNWEHGETPINFLVLGAVVHGFTLPLIWVPLDQSGNSHTYARMWLVLKLLRAWPAKRWLGLVADREFIGAEWFRFLRRQGIKRAIRIRQTDMLDDMKGKEWFEHVQHGHFHEIGEKVFVFGELMRVVATRSPVGDLVIIATDFSARKTWRLYKQRWSIECTFSSFKKRGFDLERTGMTERSRLQRLFGLVTLAWMFCLRLGVWLSQTWPIPVLKHGRRAVSLVRHGAQHLVDALRWKPQQFMAILEVFIQAFCPPGAAESEVVTY
>NZ_CP015083.1|WP_027480382.1|34384_36151_-|alkaline-phosphatase
MRKTLLLLALLSASASAAKLQVYPYDGANFIAGQRFDLRVEAEDVTSFKDAVITLDGQPVTGLVKTTTKPTSVEWTLRNQSLAAGEHVLNVKFSDAGGEVTRSVHWTAQASAPSGLAALFQKPKAKNVILFIADGMGWNTLNAAKMVAYPYNPANGMPTGKLAMETGLSSMATITTSSYDSALADSANTASSIATGQKIQVNALNVYGDNTPDTLDNPRAETITAMLKRSMGKSVGIVSSAFGVDATPAAFAAYTRRRGDYQAIADQYFKGDVKPDVLLIGGSRDFIPSTAPGSRRKDNTDWISESQKMGYQFVSTRTELNAATGNKLFGLFNIDNIPSYLDRVQFKGAETIGDFKDMPYLWDSTQKAVQTLEKNPNGFFLMVEAGMVDKYEHPLDWNRAVWDVLELDKAVAWAKDYAKSHPDTLILVTADHAHSMSVYGGYDATKGPGKREAVGVYEKAGFPTYGDKRDANGFPLSETARTYAVGFAATPDYCETYLGRRVFLDPTVSNGKTGAEAAYVPNPKICDEGAVQRTGNLDPGSSQGVHTADPLPLFVFGAGAENFSGVMDQTEIFFGMARALGLDATKNK
>NZ_CP015083.1|WP_010884076.1|36223_36499_-|hypothetical-protein
MSAANLSGQSRLSGERHFKASIPSFLTAHSAPDLVALNQVTDTKAPTLSLRLTPRGSTVWNCEWTGALYAVRPTVQFSLARARVKHPWPSS
>NZ_CP015083.1|WP_010884006.1|36554_38105_-|sensor-domain-containing-diguanylate-cyclase
MTTAAPQPQDNYARLLALARYEILDTLPEDSFDRLVQLTRHILRTPAAYINFVDQSRQWTKACVGAERDSKPLSESMCAWTILQDAPLVVENARLDRRFSHMQLVTGEASLQMYAGVPLTTPSGHRIGTLCVTDNQCHPLGDEDIQALQDLAALVMTELELRAANQELQRDLQAASCQSEELRRTLAQAKTLEGVSALTDLQLPPEEMMLAAAALLSDAVASDLTSLLLFDGPVLRAQAAHTHSRLSPAQRRYLELAVAALPNLAAGFTWSVRDAAVPVYVNDYAAHPHAQAEMVAGGVTQVAWVPLGTRSGVTSGLMSVRLGDHPVARWRSGDCALLEAAGRTIRSALDRWLLTELASQQARQDVLTGALNRRAFEEDFPVRPAPFSLALLDLDGFKAINDREGHSQGDKVLRVFAETLNVELPGGASLYRVGGDEFVVLLNSDDVPLFDEQLDIALLAARQVVAGSVGVSLGMAHSHEAAGPALVQLADARMYALKERRRAQRDTQHQDATKTL
>NZ_CP015083.1|WP_155896399.1|38323_38491_+|hypothetical-protein
MVENDTISLAELDQAMQSFSNPQSKLLGVVLNKVPRSREGYAHYSYSNAEQPTTI
>NZ_CP015083.1|WP_010884005.1|38563_39862_-|MFS-transporter
MALFPPFRFFHTGGMWRQLHPNIKVRIINSFLTRMVGGAIFPFMAVYFAHYLGAGLAGLLLMALVAVQFVAGLYGGGLADAWGRRRTLLAGEVLKLLAFAALLLGNLWTPLPWVTFAALAVINVANGLINPAAEAMLVDVSTPDTRTFMYVVNYWAVNASLLLGTLLGGWLYQDHFAALLAGLLGMSFVTLFLAWRFMSETLGGLRRTAAQVRESVGVRPLLRSYAQVMTDRPYVLFTLGFVLLMTIEFGRQNFIPVHLAQSFPAQVLWGVNLTGIKVMSLVTAINTLLIVVLTLPVSHWVGKRELRPVMALGFLLFAVGFAALYGSLNLWALVAGSVVLSIGELLYVPARQTLLADLIPEEKRGSYLAVNGQVFTLAKWLATLGVPLGAQIGGPWMGVLIVLFGVLAVVLSLRGLRAASPERTPERSAPTF
>NZ_CP015083.1|WP_010884004.1|39874_41611_+|SgrR-family-transcriptional-regulator
MTPFAAGPDWPYLELRAALLARDGEQSSYALTLNDLRGWWSKSDKTVKRTLARLQAEGKVTYTPGRGRGRTSRLSFSRDLRPELLTLTRELARRQAAGELARLSRLPFPKGWVLTPDVQRIFGLSASAGGVDRLRTVVFREYTSLDPLTAFATVEAHLLLQVFDGLTRYDPATQTLEPHLAHHWGCSDDGLTWTFYLRKGVPFHHGRTLDASDVRASLERVQRGAAWLLPELLEVRSDHPYRVSLRLARPDAFLPRRLAATQALIVPRDVPPDPQQLIGTGAFQWQPLEGGVRLSAFDAHFAGRPLIDEVELYQVEPLTEAPTLHLEGAAPQKVAEWQEETGVHFLIWNAGQPAAHSAALRAAVFELHDIRRFWEETRQPWPLLSAQSFYPRRSRDRPARVHSDERARSLLAAAGPQPPLRLWVLDREDAVAEARWLSRRAAGFGLEITVELYDLHDEVTRDTPSDLMMMGEVSGPDEQLSFWTALKQPELFFRKLLPREVLAQVDTELEEYRLAQTFAGREAVIDRVEALLLEGHHVHLTHHRVKQRTVHPLLRDVWPDAYGRISFRRLWVGGPAQD
>NZ_CP015083.1|WP_051618918.1|41639_44453_-|hypothetical-protein
MRLVGNLDPGDYGLASALPVDGAENPGSVKLPLDGSQLRQTNQFTLVVETDPASTELPRVNGVPVSAAQLGHVRPSADGQRERRSYYALPVHPGKNLIEFGREQVTLNYAGPTVRYEVTPLSAQADGSTPVRVRIRALDAAGLPAEQPTVTLRTSAEPLRPDARPGEVGYQLELHNGEGVLELRPQITPTALRLELLRDQQVSEFRVDVRPGGAALGVGLVSAAVGLGGTLPLAQRLHVQARAYYEGPLAGGQLYVAADSAGLPREDSGKARGLTYGDSSSEAVPLRGSDPVAALYEHPAFRVAYRDQEVPVNVVPLPGRMTALSASTKGNVRVSGFAALLPGDLVQAQVLRPDGTRLLRLGQEDIAPASETLTVVTRDAQTGTELGRRVLTRGVEYVLDERTGIVSLAQPLDATDAELHRVEVLASYRLSGAAAGRQPAYGAQVEVGDAQRRFGVAAVSLDGRGTIGAAGELRRGGLQVSGRALLSGGVQAEAALDGHWRSSDALSVRAHYQDEAYQGLGKGEAGLRASGRYQVMLGERLGAALDATYQRAPSKQGSDEQDGGGQGEVGALLTYRAQPWTVGGGLRWGFGSRSGLSAAGQLGYEGKQVSLSVTHSQPLSGTVRPTSDFKVAYRLTPHAALALTDHYVWGDAHSAALTLDTRLGNVNYAVAYELPGAGGAGNRARFGVSTSVPLGARTTLGLRGSALYDLQSGGSELGAGADLRWQGERAVATLGGDLAWRSGQLQAVVRGGVSGDLSERLNVSADATAELGARQGLKFGVGYAYRSAGFSSLGYGRYAGGSLGGSRPEASAGVSAEYRQGALTVRGGVDARALLSDPGSLTYQPSLGLRAELNARFSVGGWARALVQPASSQVLPGYGLEAGVQVLPGTWLSAGYNLAGFEGLPSAGLYTRPGAYLRLDVALDEGAGKKTGKAHRR
>NZ_CP015083.1|WP_010884046.1|44900_47171_-|DUF11-domain-containing-protein
MPAGASGAALVNLTAQCPGGAQDDNNVAQLVATPPPHLELRKAFGAERLRPGDQTGVTVTATNTGAGAAPDVVLEDPLGQQLDAGLAYVPGSARTDRGRLEYSADGASWQAAEPAAVRGVRVQAGTLEPGEQTTLTFRMEARPSAENLLLNNVATVSSVTGEGAQASDTLDVRFLPGVALGPLGQPLAPEGTAADGQTLVFAVTGEPACFDHTVQNTGDVTDMFRLSVSVTQGQATPQLLGAAGEPLPQPFTLAPGEQRQVRVCYDLRSAQPLTAQVIAQGERGTSNATADLIRRVETQRPGLRKTVSKVGAPDWAPGSAVTSGDELEYTLSVTNPYAQPLAGVQVLDPLPAGTEFVSASDGGALLGAASAAQVAWTLGDLPAGATRTLTLRVRVGRDVRDDQELRNVFELTSSELPAPLHSNAASAVVWNTAPLLSKTLDRRDAAPGDLLTYTLTLKNPSASTALVDLVITDTPAAALKYVTGTSRLAGVPTADPAENGGELQWRVPRLGAGESLTLSYGLRVLPGAAGELLNTAVLRGYGEQTHAVAVASNRAQVSATLKLLNFAPLGDVLGTVYLDANGNRRLDEGETVLSGARVALAGGRLALTDSRGRYHFGNVDLGTQALRLDLGSVPAVRDPGTQVVQVQGLTTVDFPLRALAALQVKRDLRVQVGELTLTKRLTEIPGGYRVTTTLQSPVALAEVAWTDPLPAGAALVSGQNVRRERLSAGSTTWTYDLRWSGPPSAALTDPVLKVVK
>NZ_CP015083.1|WP_010884044.1|47776_49852_-|DUF11-domain-containing-protein
MKANMKLLALLCALGSGAAGAASTNTMTLAGTEITNQAQATFTVGGATQTTNSDAVKIVVNAVPSYTITNDGTEASPAYTSTVNVNSNATYSYSVKNTGNTPIQVAVGATVGTGSSAITQVNYSGAATGTVPTTGAATIQTITINPDQTVTLTQTFVTPAAPGTYYVNPTGVSMQYASVAANPDGSALTTATLDQTSNRTDVNNVNKTTVLTNVPLLGSPTLTNTVVPSSPNPLPPTGTTTPGTGTGPVGSGNGPAESTGPAYTGIGSTSGTQPPVVVDASGNQYAYPKADAETVNPDSVTMTTIITNPNPTAATYELVPDLSGLPAGVTVTFTDANGNPLPDTDGNGRPEVTAGPNGGTATYRVVVTYPDTESAAAVAGPIRIPVGVDGNRDGIVDATVTYNVLLSNLKFGNTNGTALGVSDVPVTRTVTQPSVTTAVVFPMDLFNDGAYDGNYALSGSTPIGPVKYYATNPDTDGDGVLSPAELAALPAEIASTGAVPVKTEKTVYAVVTIPAGQAPGDYMVTQTATGSLSGTTKSFNTDKVTVTSPNGSLLIAKRVTTPGTTTPSLNATANPGDAVSYTVTATNNYNTSLYGLVLRDPSSNNLGSFSSSNVFGFIKPSSLRATVSGVSGATVLYRTSNLNTWAAQPTVDANTTWVEVGVDTNNNSQIDSGDVFPPNAVITLTLQGTVK
>NZ_CP015083.1|WP_010884043.1|51264_52221_+|hypothetical-protein
MSSPLAEPPEINALLARVQPALLSSAWWAEWQTAGSGTQRATLLQNLSETIRKSDLALSQQLSELALEEVFQDDEREKHAEQADLVTIQALNTLAWVRANLNDYAYSLEYCDKAFNLATQRGLQDWQCRLLNTRALPRFWLGDEMGARADLQEALELAELRGDVKQLLMCYINIAWLEILSEELESAEHHLNLLAEQLHMTDDAQLRQNHIFYLYENRLHVKLLQAREAERLGRDQAMQDALSAAQTHLDWCLTNTHFCSDKPPFEMVIRAHQAQFFMLSGEPALAVQYGEAAIEFGTHSDTWVSAYAHFCLAEAYSM

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Crispr_ID: NZ_CP015083_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015083_2

89145-89309

Orphan

Consensus_repeat	Method
TAGCGACACCTTTGCGGGAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP015083_2

>merge|NZ_CP015083|2|89145-89309|PILER-CR
TAGCGACACCTTTGCGGGAAAAGTATGAGCCATCAGAAAATTCTCTTTGTAGACGGCAAATTTTCCATTCTCAGGAATAGCGACACCTTTGCGGGATTTGGGGTCAAAATAGCGACACCTTTGCGTTATTCAGCCACCTGCATAATAGCGACACCTTTGCGGGAA

>NZ_CP015083|2|1|89145-89309|PILER-CR
TAGCGACACCTTTGCGGGAA	AAGTATGAGCCATCAGAAAATTCTCTTTGTAGACGGCAAATTTTCCATTCTCAGGAA
TAGCGACACCTTTGCGGGAT	TTGGGGTCAAAATAGCGACACCTTTGCGTTATTCAGCCACCTGCATAA
TAGCGACACCTTTGCGGGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015083.1\|WP_010884069.1\|95343_95901_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015083.1\|WP_010884040.1\|83125_84934_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015083.1\|WP_010884039.1\|84926_86420_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015083.1\|WP_149358005.1\|98734_99064_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015083.1\|WP_010884027.1\|95900_96407_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|226679
NZ_CP015083.1\|WP_010884020.1\|81963_82947_-\|IS4-like-element-ISDra1-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP015083.1\|WP_010883985.1\|92437_95347_-\|McrB-family-protein	unknown	unknown	gnl\|CDD\|224319
NZ_CP015083.1\|WP_010883987.1\|79872_80496_-\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	unknown	unknown	gnl\|CDD\|225020
NZ_CP015083.1\|WP_010884025.1\|88145_88922_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP015083.1\|WP_081816096.1\|96446_96704_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|377942
NZ_CP015083.1\|WP_010883983.1\|99961_101791_-\|class-I-SAM-dependent-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|223934
NZ_CP015083.1\|WP_010884067.1\|81593_81776_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015083.1\|WP_010883982.1\|101787_104613_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|350769
NZ_CP015083.1\|WP_010883986.1\|80492_81551_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238563
NZ_CP015083.1\|WP_010884036.1\|96761_97247_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015083.1\|WP_149358006.1\|99067_99664_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015083.1\|WP_010884026.1\|87273_88149_-\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NZ_CP015083.1\|WP_010884037.1\|91109_92438_-\|McrC-family-protein	unknown	unknown	gnl\|CDD\|226718
NZ_CP015083.1\|WP_010883988.1\|78557_79883_-\|cobyrinate-a,c-diamide-synthase	unknown	unknown	gnl\|CDD\|224710
NZ_CP015083.1\|WP_010883989.1\|77664_78567_-\|cobalamin-biosynthesis-protein-CobD	unknown	unknown	gnl\|CDD\|224189

Protein	Function_ID	Function_description	E-value
NZ_CP015083.1\|WP_010883983.1\|99961_101791_-\|class-I-SAM-dependent-DNA-methyltransferase	gnl\|CDD\|223934	COG1002, COG1002, Type II restriction enzyme, methylase subunits [Defense mechanisms].	5.29871e-71
NZ_CP015083.1\|WP_010884027.1\|95900_96407_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|226679	COG4226, HicB, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	4.39459e-57
NZ_CP015083.1\|WP_010884020.1\|81963_82947_-\|IS4-like-element-ISDra1-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.41686e-13
NZ_CP015083.1\|WP_010883985.1\|92437_95347_-\|McrB-family-protein	gnl\|CDD\|224319	COG1401, McrB, GTPase subunit of restriction endonuclease [Defense mechanisms].	6.09898e-128
NZ_CP015083.1\|WP_010883987.1\|79872_80496_-\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	gnl\|CDD\|225020	COG2109, BtuR, ATP:corrinoid adenosyltransferase [Coenzyme metabolism].	5.89173e-84
NZ_CP015083.1\|WP_010884025.1\|88145_88922_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.91988e-52
NZ_CP015083.1\|WP_081816096.1\|96446_96704_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	3.66982e-06
NZ_CP015083.1\|WP_010883989.1\|77664_78567_-\|cobalamin-biosynthesis-protein-CobD	gnl\|CDD\|224189	COG1270, CbiB, Cobalamin biosynthesis protein CobD/CbiB [Coenzyme metabolism].	1.06335e-93
NZ_CP015083.1\|WP_010883982.1\|101787_104613_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|350769	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA. In bacteria, RapA is an RNA polymerase (RNAP)-associated SWI2/SNF2 (switch/sucrose non-fermentable) protein that mediates RNAP recycling during transcription. The ATPase activity of RapA is stimulated by its interaction with RNAP and inhibited by its N-terminal domain. The conformational changes of RapA and its interaction with RNAP are essential for RNAP recycling. RapA is part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	4.71106e-66
NZ_CP015083.1\|WP_010883986.1\|80492_81551_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238563	cd01143, YvrC, Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	8.25099e-76
NZ_CP015083.1\|WP_010884026.1\|87273_88149_-\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	2.69777e-45
NZ_CP015083.1\|WP_010884037.1\|91109_92438_-\|McrC-family-protein	gnl\|CDD\|226718	COG4268, McrC, McrBC 5-methylcytosine restriction system component [Defense mechanisms].	0
NZ_CP015083.1\|WP_010883988.1\|78557_79883_-\|cobyrinate-a,c-diamide-synthase	gnl\|CDD\|224710	COG1797, CobB, Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism].	0

>NZ_CP015083.1|WP_010884025.1|88145_88922_-|ParA-family-protein
MTTILTVFTHAGGAGKTSIAGNIAHEFAQRGQHVLLIDGDPQSNLTTNMGVQDAELHETLFDVLSGDAPLPAPRHVHGFDLIPAVIDLAEVEPSIPGRVGGILALRDALQKESGRWDTVIIDSPPSLGQLAAACALAADALVVPIMTRSKGLNALRGLNRVMPQYHRLRPDLHVAAYVPTMCKSNRKEDSELLGIVREDLPHVTSPIVERGAVWNGAAEKGLPVTVFAPRSKEAEEIRKITSDLVEFLQRNAPERGER
>NZ_CP015083.1|WP_010884026.1|87273_88149_-|ParB/RepB/Spo0J-family-partition-protein
MTRREGLAALLGESAKLAQGPVVGHTSTLRVDQLRAGSQQPRRQFGTEGLTELAASIQSQGILQPLLVRAVGDTYEIVAGERRWRAAQLAGLTEVPVIVKSLTDQEAAVIALIENLQRENLNLIDEVEGKLLLVANALGIASEQARSRLNELLRNPVPEDVETLSAVFLPLGRESWQSFAKNKVRILNYPPPLVEALRQGMALTMATLIARAPENKQADLIAKVQQGAGRKEIVAEVERLCHRPTVRLEKRVAQALGNQKWLDRLDPQDAEAMQHWLSQMPRALQQEIGDN
>NZ_CP015083.1|WP_010884039.1|84926_86420_+|hypothetical-protein
MTEPALWLQTGTATARRAGLLHLTQETAALTNISQYRVLVLSPDESQVSRLQVDLHRQQLPYLVKTAKRFLNDLTFKGLGTVQQTRELLNSFKIEKARTGQWSGKAQFYFEHRELAKRVKLALQPEHKVPIKDLLQDLQNLLRHPEWITDLCDPTLLKAATCLNPKVGTSPLRVKAGIDLIAILDYHLLSPEQQFLFAALTQAPSSWPLPRLIISSNGGYWLGAHMQWQPRLESVALPKAVQPHPELRALLNQFEKADSICDERQAEQDIRSRPATDQDAFTLTLLNAAQTAAEWRKILTRPIQAALEKNRQVTVLHTEESVKTALTEAFPDWAPEAQRANAAIEAHLRFWCGISGPQGGHPLANLLPRDERGYHFDEAWNLRRSREESQEYSLFLNDEETFLRQESTGALLKAAGLPAPPFDLPEEPYRALGVMISRRLSAQVNVLPAEQMTELCDDVFFILRGEPVSKALVQGLNHSLHHFHLIHLRDPCASSQH
>NZ_CP015083.1|WP_010884040.1|83125_84934_+|hypothetical-protein
MPSGTTSNRSCHLLRREPSQLQSNEAVDSLIGLAVDFHELWAAGESQHVAVNHYRTWRAAVEHWPEKHGSEVKPFKRLTYLLDEQGWLFEISNALAKGARSYLDEDGVSGPVMTTGRLERFNRKVGQLTHMHQRNPRAGKNEADWREEELFSDFRERVLYALNVPAEPVVTLEAQIIPEVPVCSCGELLSEPNLQKAIDHQVWDLPLSGARVRLQYQERHYLCPQCAQTSVQSFPRTSGMTPRLLTYLQEQLRGDFNFSTLRRTTGVSKKILETLQENALPVPAQLPENLAALTFKWRRQRRLALFDVTTAAPVTLLAHSDLRQDVTTQELLSFLESPAAGKVKQVWVNDPSWIPSSAARCPEVTFVLDPFSTSQLIKRAATRLQQAFSATLNPGVGRAPIMRKYRSLFIHHPHGDHWRLLDRMDPERHRLYDLRDHLMETYPMVGFGLGRTDSLRLLFDRPMPTTDADLDRWLADTEAEYRQRLQTTTAADQAGLNRAYQALHPLLDHLAPGSRTRQAIVTGARLSPHPVKRQVPKLPKSPGQKKEKAKQQKPAQRQVLNLTSVRRKMQRLSAMSAYQARGELTADWQRLLRATQQWKPHD
>NZ_CP015083.1|WP_010884020.1|81963_82947_-|IS4-like-element-ISDra1-family-transposase
MIAARSVNHHDLSAHMPGMSTPQGKKRRADRTFRDEQLDRGFFIALLVVHLPPGKVLLSLDRTNWEHGETPINFLVLGAVVHGFTLPLIWVPLDQSGNSHTYARMWLVLKLLRAWPAKRWLGLVADREFIGAEWFRFLRRQGIKRAIRIRQTDMLDDMNGKEWFEHVQHGHFHEIGEKVFVFGELMRVVATRSPTGDLVIIATDFSARKTWRLYKQRWSIECTFSSFKKRGFDLERTGMTERSRLQRLFGLVTLAWMFCLRLGVWLSQTWPIPVLKHGRRAVSLVRHGAQHLVDALRWKPQQFMAILEVFIQAFCPPGAAESEVVTY
>NZ_CP015083.1|WP_010884067.1|81593_81776_+|hypothetical-protein
MPEWVRDWKKPGRTVTGLPLAQVASVYPSGSLRRSACPGTGLFFAVHQAVPALGEAQVLR
>NZ_CP015083.1|WP_010883986.1|80492_81551_-|ABC-transporter-substrate-binding-protein
MPLRDANGSAGPCSWPAETRPHLSPSEGQFSERATPAFWCLLWPRPGQVFSCACPDLPPPHPECSMRLISLTLLALLSSAAATKYPLTVTDDLGRTVVIKSEPRRVVAMLPSHTETLVALGAADKLVAVDTYSNFPRRVVEKLPRVGSAFKPDLEAIVALKPDLILADESSGSKLTSKLAALGLTVYGGTAQSYNEVFEKMAVIGKMVNRETNATRLITTTRADLNALQQSVRQLPKISVYYEVDPAPYSVGPNSFIGTLIAKAGGQTIIPAKLGDFPKIDPELIVKANPQVIIGVTPDDAKKRGGWTTLNAVKAGWVYKPTDEERDALSRPGPRLPVALRALIKMIHPEAK
>NZ_CP015083.1|WP_010883987.1|79872_80496_-|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase
MKPDMDDATRERREAAMRELTEQRDNYRKKEGISKGRRGLLIVNTGKGKGKTTAALGLMLRAHGRGLRVKMFQFLKHDTAKFGEHRTLDMLEIPYQGLGDGWTWRSRDLENSAELAAHGWALAREAIESGEYDLIVLDEFTYPLKYGWVAWAEVEPVLKNRDPLLHVIITGRDAIPELIALADTVSEIQPVKHAYEQGIGGQTGIEY
>NZ_CP015083.1|WP_010883988.1|78557_79883_-|cobyrinate-a,c-diamide-synthase
MNINRFVLAAPGSGSGKTTVAALLCLALRARGLSVQPFKLGPDYLDPTHLTRAAGRETRNLDSFLLAPERLQTLFARAAAQAEVCVIEGVMGLYDGRDPGSDEHSTAALARLLGARVVLVIDAGGMARTVAAVAAGLRDFGEGVNVAGVILNRVGSVRHAELCAEALTQVGLACLGFLLQDDALRLPSRHLGLLSAQQASWDEAAALAAARYLDLDALLNVTRAPDLSSSSSMSPPPSTRIAYAFDSAFHFYYPDALDELRSCGAELVPFSPLEDAGVPEDVGGLLLGGGYPEAHAAELAANERMRRSVRAFAASGRPVVGECGGLMYLSETLEDENGVTHEMCGVVPYRTRMARRLSLGYRDALSLADSPLLPAGTAIRGHEFHFSTLTHEPTHPAYRWRTHDGQEVAEGYARGNVLASYLHLHYGGFPAVAARLVERCQ
>NZ_CP015083.1|WP_010883989.1|77664_78567_-|cobalamin-biosynthesis-protein-CobD
MPVRRRALLLALALDTLGEPPAYFHPVIYMGNYLRWAQTHWCGKTAKQQFTQGAAGWALGAGLAAGAGWTASGLPWWVQGALLKPLLARKALFDAVAEVAGALEQGDVPEARRLLAWHLVSRDTSQLTAAEVAGAAIESLAENLSDSVVAPLLAYRAGGLPLAAAYRLTNTADAMWGYRTPELEDAGKAAAKADDLFNLAPARLTALCTLMVSGSQSWRVWVRDRRNPASPNAGHPMSAFAGALGVRLDKRGVYVLNAAGAAPGPEHLAPALALARRTLVLAVLVLLLPFPGRLSRRPHA
>NZ_CP015083.1|WP_010884037.1|91109_92438_-|McrC-family-protein
MPGAPPPNQAPHFEVREHDLLVPGIRRPEWKANVTALPPAVFEAVQAALFDPRYELSPVATMTRFEGRAALKLTQWVGLLRTPDGATVEILPKTHERPGTRTGAESLERSRALLLRMLAATDERFRVAPPAELQTAHMPLYEVVIRYALEGVRAAVRRGIPHAYVPVQEERPGLRGRLDLPRQVRQPPHRAHLLHVTYDEFLPDRPETRLTRLSVERLAALTRLPANQRLARELLHALDEVPPSRNVNVDFAAWRLGRGHTHFAPLEALCRMVLYELNPIVAGKKTQAHALLFDMNVVYEAYVAQLLRRLYPTWTVATQVTQRALGDADGLPAFRLRPDLLLRTEEGQVIVADTKWKRLEADKAPTYDVANADAYQMLAYSEAFQHSAAYTHKALWLIYPRLPGLPPVSAPIRLGQGRTLSIVTIDLNQADPGAQWPASVLT
>NZ_CP015083.1|WP_010883985.1|92437_95347_-|McrB-family-protein
MSDAAISCSWKPFFRELATRLLDYEDRQPELLAALRDASISINHDEGEPLREVDPFTFFSLVLKHTSDATALPLFARVGAALGVQAPSPTDLIGVPWSNPMNAWFFAYRSQRQPGDVPLLWRLARQAVAGILDAQTFEDALKIRKVALPKLTQGLFWLNPERFLALNAVNVPYLQARGLQAAGQVQTLAEYETVLEAAHKLNPDFAALSHRAWLNSQTAALEGNHFPFARYQADAQEFAGDKVKGNLVLDRRYAPLLLDLMAGEWETLKPSRSPYSGREQLAVKVALGGGVKTDGGAFARALLFADDSGFEYVPFSAGLTLEAGLPDGRGDGPRQALQEPARQHTLLTALNAPLPAGLEATLTLNTDFGALFLLPLGPGREAEAAQQLQQYMSGVGRSRRLRVGLSLLPEHLESDKFPELLDAALTYLDALVDLLDGLMRPSEETSTEEIGVPGTRPVAPTPAAFVPVPGVPLNQILYGPPGTGKTYRVVDEALSVLDPAFLSAHPGSEGRAARKARYDELAAQGQISFVTFHQSFGYEDFIEGIKPVMSGGALSYVLQDGVFLEAVRSAGGALAPAAPEAGPSTETQPLVRPDAQVWRMYIDGTAPVSRIRDLSLGRGELRMGSYGKPPRDLTQAGVEDLSGRQLLFKESVRVGDLMLLATAADRIGAVGVVTGDYRFDPHSDPTFATDYAHTRSVKWLAQDLNVGATETLGKSFAPPTLQRVADVTPAQVLQALGVSTAGGETAHAPTPRPHVLIIDEINRGNISKIFGELITLLESGKRTGAPEALTVTLPLSRRPLSVPQSLYVIGTMNTADRSLTLLDAALRRRFVFRPVWPQPEVLPVLDLGGTALDLRKFLHVINDRIERLLSREQVIGHAYLLGLPATLGGVSSALRERILPLLEEYFFEDWSKIREVLGDESKAEALQFIHRSGSGPELRYRLNPEAFENIEAFTGVYAGVSDQDFPFDA
>NZ_CP015083.1|WP_010884069.1|95343_95901_-|hypothetical-protein
MPRRTSQEVSQAESMVLDALTYNRFVAGVQPTRIELGEVSASAKPSDFQELDVRVDSHFKVQCLKSNAQARTFEIDAQLELHFIAANEQKVGQFVCLYHLSYLSVEALSDALLEEFARRNAPVNVWPFMRELVLNLTQRFGWTGFVLPSFLIPPSPEKASDPETASHDAEVVPASKKPRKAKTKA
>NZ_CP015083.1|WP_010884027.1|95900_96407_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MTTLEYRGYIGSVTFDAEAEILHGTVVNTRDVITFQGESVSEIKQAFKESVEDYLAFCAELGEEPEKPMSGKFNVRISPLLHAQAVAMAQSQEISLNTLVERAINDVVNRSASVDAQSAQDHQPNTDEECDSDREIYDVAIHWSGTRLAKASSVMTSMQQSLEVRVTN
>NZ_CP015083.1|WP_081816096.1|96446_96704_-|type-II-toxin-antitoxin-system-HicA-family-toxin
MSGRHQRTLEQIFARPISGTIHWDAIEKLLVHLGAEISEGSGSRVRISLRGVRAVFHRPHPQPTTDKGAVNDVRKLLENAGIRPE
>NZ_CP015083.1|WP_010884036.1|96761_97247_-|hypothetical-protein
MNSYVLDYSARQKVGGTHLTYNYLKQFPVLPPSVFNPSRLAFITPRVLELTYTAHDLSGFARDLGYAGEPFTWDDERRFWLRAELDALYFLLYGIERPDVDYIMETFPIVKRKDVAAHGSYRTKEAILSVYDELTALGLERLHEYASRVPGGAVAGGWGPE
>NZ_CP015083.1|WP_149358005.1|98734_99064_+|hypothetical-protein
MRGGAKQAGIAGHIEQPLLEADAPGILSRRLIEQYGYALVNALRNGRVTAAAEHGRGAGVGVQQGNFGRGEAEHLAGVAGFVGIQGKESELRGIVGTLLAAGCQHAELE
>NZ_CP015083.1|WP_149358006.1|99067_99664_+|hypothetical-protein
MYARENAFAVLKVVQAHQRLFVHQALEEELGGVVGGNARRHDDAQASARIETVSAKLAENRVGVNAPPRRQWIAPAGRNEMTHGVCFTPGEQEVGVELWVILGQSFNHFLAECSGGGVGNFWFSRRKPLFFLQFRVFPRWVAQHAVEATFLRVSEHVGKLDVRMQEGVLRGHVAHQLPHGLQGGGVRRAFQGVQRGGG
>NZ_CP015083.1|WP_010883983.1|99961_101791_-|class-I-SAM-dependent-DNA-methyltransferase
MTTQLHHVRLHGLGLTDDFLLQLSDRAQTGKVEGATPASYDLPPKTSLEEAIQDAWDDARKAWAKYQQHGTDAWAGWVRPLLRALDYNFVGGGAAGGKYAVGHLTETGDVPLHFTRQPDLDRVTDETGLRVSPHGLMQGYLNATPEHLWGLVTNGETLRLLRDNAQVTRPAYAEFQIGEMLRTEDARAFRVLWLLLHRTRLRGGKVGPLEAWNEASKVLGQRANDTLRDGVQLAIEHLGTGFLRHNPELLERTRSGEVKAEDLYRAALTTVYQMVFLFVTEDRDLLFARDEDGEYLPDAQTRARAAHYLTRALRQKAGSVNGNPLHHDAYVAWERLLGYLRGGFAPLGLPALGSLLFQPTLLSGLKLGNDAFYGAVRALSEISVNGSLRPVNYAGLDSEELGSIYESLLELVPRIEPGPRFSLTVLPGNERKSTGSYYTPGSLIDLLLDSALDPVIEDAVRDKLPEDAIAALKGLKVIDPACGSGHFLIAAARRIGARLAELEEETSLPSPRALRKATRTVIAHCIYGADINPMAIELAKVALWLESQDAGRPLAFLDHRLRVGNSLLGATPELMNAEDEIPEKTVRGVTSRAVRAHTLHLPDEAFSAI
>NZ_CP015083.1|WP_010883982.1|101787_104613_-|DEAD/DEAH-box-helicase
MTFDIGSMVRARGRDWVVLPESGADFLLLRPLGGSDAEIAGVYAGEGGEEVTSAAFAPPSPAAFGTASGARLLLNAARLAVRSGAGPFRSLSRLGVEPRPYQLVPLLMALRQSPARLMIADDVGIGKTVEAALIARELLDRGEIDRLTVLCPPHLAGQWVEELRVKFGIDAVAVLPGTARRLEKGCNPGQSVFERYKFTVVSLDLVKSDRWRQDFLTNAPDFVIVDEAHASAEGEGMGTKRHQRYRLLEDLARKEDRHLILVTATPHSGKEDAFRSLLRLLNPDFARLPLDLSGAQNERARATLARHLVQRGRKDIAEYLQEDTPFPTRRDAELHYALHPDYAALFDDVLAYARESVHVPGEAQSRTRIRWWAALGLLRALASSPQAAAATLRERAIAADDGETDEAVIDRLGRELVLDPEEGEDSALDMTPGAQVDGEQSETTGRLLTLASRADALAGAKDNKLKLLTAQVQGLVDQGFAPIVFCRFIATAEAVAEHLRGALKGSEVLAVTGRHTPDERVDRVEELARAERRVLVATDCLSEGINLQAAFSAVIHYDLPWNPTRLDQREGRVDRYGQASPEVRVLTIYGEDNRIDTLILEVLVRKHRLIRATLGTSVPAPEEAESLLDVLLSRVLNAQGREVIQPLLFEDVQAFDLKWRDAAEGEKKSRSRFAQNSIRPEEVASELRAVREALGDAHAAQDFVLDALSGAGVSVSPRVDGSFEADPAQADVRPEYRDFLRGARRFRFDAQTERGVTPLARNHPLVEQLASTVLGQALDAPLEAAAKRVGVIRTSKVATQTTLLLLRHRFHLTGRKGNRTWQTLAEELDLLAYAGRAPADGKGGWLDAEATRALLALTPEGNLDPVQKEDRLTRVLADVQGLDGPLMARAQERAAALLEAHERVRGAARGQGVTYSVEPPGPPDLLGIYVFLPLPKLGALS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP015083_1	1.1\|34222\|31\|NZ_CP015083\|CRISPRCasFinder	34222-34252	31	NZ_CP015081.1	107064-107094	1	0.968
NZ_CP015083_1	1.1\|34222\|31\|NZ_CP015083\|CRISPRCasFinder	34222-34252	31	NZ_CP015081.1	2506081-2506111	2	0.935

1. spacer 1.1|34222|31|NZ_CP015083|CRISPRCasFinder matches to position: 107064-107094, mismatch: 1, identity: 0.968

cggagcgagaggcaaaagagacgtgctgcgg	CRISPR spacer
cggagcgagaagcaaaagagacgtgctgcgg	Protospacer
**********.********************

2. spacer 1.1|34222|31|NZ_CP015083|CRISPRCasFinder matches to position: 2506081-2506111, mismatch: 2, identity: 0.935

cggagcgagaggcaaaagagacgtgctgcgg	CRISPR spacer
cggagcgagcagcaaaagagacgtgctgcgg	Protospacer
********* .********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP015083_1	1.1\|34222\|31\|NZ_CP015083\|CRISPRCasFinder	34222-34252	31	NC_000958	Deinococcus radiodurans R1 plasmid MP1, complete sequence	55186-55216	1.0
NZ_CP015083_1	1.1\|34222\|31\|NZ_CP015083\|CRISPRCasFinder	34222-34252	31	NZ_CP050118	Deinococcus radiodurans strain BNK-50 plasmid pMP1, complete sequence	146645-146675	1.0
NZ_CP015083_1	1.1\|34222\|31\|NZ_CP015083\|CRISPRCasFinder	34222-34252	31	NZ_CP050122	Deinococcus radiodurans strain BND-54 plasmid pMP1, complete sequence	91142-91172	1.0
NZ_CP015083_1	1.1\|34222\|31\|NZ_CP015083\|CRISPRCasFinder	34222-34252	31	NZ_CP031502	Deinococcus radiodurans strain R1 dM1 plasmid pMP1, complete sequence	101703-101733	1.0
NZ_CP015083_2	2.1\|89165\|57\|NZ_CP015083\|PILER-CR	89165-89221	57	NZ_CP050118	Deinococcus radiodurans strain BNK-50 plasmid pMP1, complete sequence	24228-24284	1.0
NZ_CP015083_2	2.1\|89165\|57\|NZ_CP015083\|PILER-CR	89165-89221	57	NZ_CP050122	Deinococcus radiodurans strain BND-54 plasmid pMP1, complete sequence	146080-146136	1.0
NZ_CP015083_2	2.1\|89165\|57\|NZ_CP015083\|PILER-CR	89165-89221	57	NC_000958	Deinococcus radiodurans R1 plasmid MP1, complete sequence	221-277	1.0
NZ_CP015083_2	2.1\|89165\|57\|NZ_CP015083\|PILER-CR	89165-89221	57	NZ_CP031502	Deinococcus radiodurans strain R1 dM1 plasmid pMP1, complete sequence	156646-156702	1.0
NZ_CP015083_2	2.2\|89242\|48\|NZ_CP015083\|PILER-CR	89242-89289	48	NZ_CP050118	Deinococcus radiodurans strain BNK-50 plasmid pMP1, complete sequence	24305-24352	1.0
NZ_CP015083_2	2.2\|89242\|48\|NZ_CP015083\|PILER-CR	89242-89289	48	NZ_CP050122	Deinococcus radiodurans strain BND-54 plasmid pMP1, complete sequence	146157-146204	1.0
NZ_CP015083_2	2.2\|89242\|48\|NZ_CP015083\|PILER-CR	89242-89289	48	NC_000958	Deinococcus radiodurans R1 plasmid MP1, complete sequence	153-200	1.0
NZ_CP015083_2	2.2\|89242\|48\|NZ_CP015083\|PILER-CR	89242-89289	48	NZ_CP031502	Deinococcus radiodurans strain R1 dM1 plasmid pMP1, complete sequence	156723-156770	1.0

1. spacer 1.1|34222|31|NZ_CP015083|CRISPRCasFinder matches to NC_000958 (Deinococcus radiodurans R1 plasmid MP1, complete sequence) position: , mismatch: 0, identity: 1.0

cggagcgagaggcaaaagagacgtgctgcgg	CRISPR spacer
cggagcgagaggcaaaagagacgtgctgcgg	Protospacer
*******************************

2. spacer 1.1|34222|31|NZ_CP015083|CRISPRCasFinder matches to NZ_CP050118 (Deinococcus radiodurans strain BNK-50 plasmid pMP1, complete sequence) position: , mismatch: 0, identity: 1.0

cggagcgagaggcaaaagagacgtgctgcgg	CRISPR spacer
cggagcgagaggcaaaagagacgtgctgcgg	Protospacer
*******************************

3. spacer 1.1|34222|31|NZ_CP015083|CRISPRCasFinder matches to NZ_CP050122 (Deinococcus radiodurans strain BND-54 plasmid pMP1, complete sequence) position: , mismatch: 0, identity: 1.0

cggagcgagaggcaaaagagacgtgctgcgg	CRISPR spacer
cggagcgagaggcaaaagagacgtgctgcgg	Protospacer
*******************************

4. spacer 1.1|34222|31|NZ_CP015083|CRISPRCasFinder matches to NZ_CP031502 (Deinococcus radiodurans strain R1 dM1 plasmid pMP1, complete sequence) position: , mismatch: 0, identity: 1.0

cggagcgagaggcaaaagagacgtgctgcgg	CRISPR spacer
cggagcgagaggcaaaagagacgtgctgcgg	Protospacer
*******************************

5. spacer 2.1|89165|57|NZ_CP015083|PILER-CR matches to NZ_CP050118 (Deinococcus radiodurans strain BNK-50 plasmid pMP1, complete sequence) position: , mismatch: 0, identity: 1.0

aagtatgagccatcagaaaattctctttgtagacggcaaattttccattctcaggaa	CRISPR spacer
aagtatgagccatcagaaaattctctttgtagacggcaaattttccattctcaggaa	Protospacer
*********************************************************

6. spacer 2.1|89165|57|NZ_CP015083|PILER-CR matches to NZ_CP050122 (Deinococcus radiodurans strain BND-54 plasmid pMP1, complete sequence) position: , mismatch: 0, identity: 1.0

aagtatgagccatcagaaaattctctttgtagacggcaaattttccattctcaggaa	CRISPR spacer
aagtatgagccatcagaaaattctctttgtagacggcaaattttccattctcaggaa	Protospacer
*********************************************************

7. spacer 2.1|89165|57|NZ_CP015083|PILER-CR matches to NC_000958 (Deinococcus radiodurans R1 plasmid MP1, complete sequence) position: , mismatch: 0, identity: 1.0

aagtatgagccatcagaaaattctctttgtagacggcaaattttccattctcaggaa	CRISPR spacer
aagtatgagccatcagaaaattctctttgtagacggcaaattttccattctcaggaa	Protospacer
*********************************************************

8. spacer 2.1|89165|57|NZ_CP015083|PILER-CR matches to NZ_CP031502 (Deinococcus radiodurans strain R1 dM1 plasmid pMP1, complete sequence) position: , mismatch: 0, identity: 1.0

aagtatgagccatcagaaaattctctttgtagacggcaaattttccattctcaggaa	CRISPR spacer
aagtatgagccatcagaaaattctctttgtagacggcaaattttccattctcaggaa	Protospacer
*********************************************************

9. spacer 2.2|89242|48|NZ_CP015083|PILER-CR matches to NZ_CP050118 (Deinococcus radiodurans strain BNK-50 plasmid pMP1, complete sequence) position: , mismatch: 0, identity: 1.0

ttggggtcaaaatagcgacacctttgcgttattcagccacctgcataa	CRISPR spacer
ttggggtcaaaatagcgacacctttgcgttattcagccacctgcataa	Protospacer
************************************************

10. spacer 2.2|89242|48|NZ_CP015083|PILER-CR matches to NZ_CP050122 (Deinococcus radiodurans strain BND-54 plasmid pMP1, complete sequence) position: , mismatch: 0, identity: 1.0

ttggggtcaaaatagcgacacctttgcgttattcagccacctgcataa	CRISPR spacer
ttggggtcaaaatagcgacacctttgcgttattcagccacctgcataa	Protospacer
************************************************

11. spacer 2.2|89242|48|NZ_CP015083|PILER-CR matches to NC_000958 (Deinococcus radiodurans R1 plasmid MP1, complete sequence) position: , mismatch: 0, identity: 1.0

ttggggtcaaaatagcgacacctttgcgttattcagccacctgcataa	CRISPR spacer
ttggggtcaaaatagcgacacctttgcgttattcagccacctgcataa	Protospacer
************************************************

12. spacer 2.2|89242|48|NZ_CP015083|PILER-CR matches to NZ_CP031502 (Deinococcus radiodurans strain R1 dM1 plasmid pMP1, complete sequence) position: , mismatch: 0, identity: 1.0

ttggggtcaaaatagcgacacctttgcgttattcagccacctgcataa	CRISPR spacer
ttggggtcaaaatagcgacacctttgcgttattcagccacctgcataa	Protospacer
************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

20518 : 70339

uncultured_virus(11.11%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010884008.1\|20518_21769_-\|transposase	IS4 family transposase	A0A218MNH3	uncultured_virus	1.8e-36	28.1
WP_063653099.1\|21983_23159_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_010884019.1\|23163_24147_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_149358002.1\|24674_25190_-\|transposase	transposase	NA	NA	NA	NA
WP_010884051.1\|26033_26564_-	hypothetical protein	NA	NA	NA	NA
WP_027480379.1\|27023_28022_+	dihydroxyacetone kinase subunit DhaK	NA	NA	NA	NA
WP_081816081.1\|27976_28615_+	dihydroxyacetone kinase subunit L	NA	NA	NA	NA
WP_010884007.1\|28611_29013_+	PTS-dependent dihydroxyacetone kinase phosphotransferase subunit DhaM	NA	NA	NA	NA
WP_010884050.1\|29303_31448_-	hypothetical protein	NA	NA	NA	NA
WP_010884049.1\|31657_32866_-	ABC transporter permease	NA	NA	NA	NA
WP_010884017.1\|32862_33510_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.4e-23	38.3
WP_010884048.1\|33506_33965_-	hypothetical protein	NA	NA	NA	NA
WP_027480382.1\|34384_36151_-	alkaline phosphatase	NA	NA	NA	NA
WP_010884076.1\|36223_36499_-	hypothetical protein	NA	NA	NA	NA
WP_010884006.1\|36554_38105_-	sensor domain-containing diguanylate cyclase	A0A2D0W9B6	Bordetella_phage	4.6e-10	48.7
WP_155896399.1\|38323_38491_+	hypothetical protein	NA	NA	NA	NA
WP_010884005.1\|38563_39862_-	MFS transporter	NA	NA	NA	NA
WP_010884004.1\|39874_41611_+	SgrR family transcriptional regulator	NA	NA	NA	NA
WP_051618918.1\|41639_44453_-	hypothetical protein	NA	NA	NA	NA
WP_010884046.1\|44900_47171_-	DUF11 domain-containing protein	NA	NA	NA	NA
WP_010884044.1\|47776_49852_-	DUF11 domain-containing protein	NA	NA	NA	NA
WP_010884043.1\|51264_52221_+	hypothetical protein	NA	NA	NA	NA
WP_010884003.1\|52380_53040_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	7.9e-12	31.5
WP_010884002.1\|53061_55563_-	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA
WP_010884075.1\|55700_56021_+	hypothetical protein	NA	NA	NA	NA
WP_010884001.1\|56235_57372_+	type II toxin-antitoxin system prevent-host-death family antitoxin	A0A240F4U1	Ochrobactrum_phage	1.4e-11	32.5
WP_010884016.1\|57368_58280_+	ParB/RepB/Spo0J family partition protein	S5WII0	Leptospira_phage	2.8e-07	32.1
WP_010884000.1\|58417_59668_-	hybrid sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	3.5e-16	30.0
WP_010883999.1\|59645_61379_-	response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	1.0e-26	24.5
WP_010883998.1\|61375_62431_-	anti-sigma regulatory factor	NA	NA	NA	NA
WP_010883997.1\|62525_62939_-	anti-sigma regulatory factor	NA	NA	NA	NA
WP_010883996.1\|62919_63345_-	STAS domain-containing protein	NA	NA	NA	NA
WP_010883995.1\|63350_64250_-	STAS domain-containing protein	NA	NA	NA	NA
WP_010884042.1\|64338_65448_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_010884041.1\|65619_66171_+	hypothetical protein	NA	NA	NA	NA
WP_010884074.1\|66242_66551_-	hypothetical protein	NA	NA	NA	NA
WP_010884015.1\|66782_67766_+\|transposase	IS4-like element ISDra1 family transposase	NA	NA	NA	NA
WP_149358003.1\|68054_68399_+\|transposase	transposase	NA	NA	NA	NA
WP_149358004.1\|68359_69061_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.2e-35	39.6
WP_082865519.1\|69136_70339_-\|transposase	IS4-like element ISDra7 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

81963 : 156870

Bacillus_phage(25.0%)

transposase,integrase

attL 110355:110380|attR 144639:144664

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010884020.1\|81963_82947_-\|transposase	IS4-like element ISDra1 family transposase	NA	NA	NA	NA
WP_010884040.1\|83125_84934_+	hypothetical protein	NA	NA	NA	NA
WP_010884039.1\|84926_86420_+	hypothetical protein	NA	NA	NA	NA
WP_010884026.1\|87273_88149_-	ParB/RepB/Spo0J family partition protein	S5VTK0	Leptospira_phage	1.2e-12	42.6
WP_010884025.1\|88145_88922_-	ParA family protein	Q8JL10	Natrialba_phage	1.8e-10	31.1
WP_010884037.1\|91109_92438_-	McrC family protein	NA	NA	NA	NA
WP_010883985.1\|92437_95347_-	McrB family protein	K4I1H4	Acidithiobacillus_phage	1.5e-25	39.8
WP_010884069.1\|95343_95901_-	hypothetical protein	Q24LG0	Clostridium_phage	2.5e-06	23.4
WP_010884027.1\|95900_96407_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_081816096.1\|96446_96704_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_010884036.1\|96761_97247_-	hypothetical protein	NA	NA	NA	NA
WP_149358005.1\|98734_99064_+	hypothetical protein	NA	NA	NA	NA
WP_149358006.1\|99067_99664_+	hypothetical protein	NA	NA	NA	NA
WP_010883983.1\|99961_101791_-	class I SAM-dependent DNA methyltransferase	A0A1B1IUC6	uncultured_Mediterranean_phage	2.7e-09	52.9
WP_010883982.1\|101787_104613_-	DEAD/DEAH box helicase	A0A1B1IUI1	uncultured_Mediterranean_phage	3.0e-31	25.2
WP_010884023.1\|109966_110950_-\|transposase	IS4 family transposase	NA	NA	NA	NA
110355:110380	attL	NA	NA	NA	NA
WP_010883980.1\|111121_112765_+	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_010889512.1\|112839_114042_+\|transposase	IS4-like element ISDra7 family transposase	NA	NA	NA	NA
WP_010883978.1\|114418_115333_+	TerC family protein	A0A0R6PEZ3	Moraxella_phage	4.6e-42	45.9
WP_010884078.1\|115459_115780_+	hypothetical protein	NA	NA	NA	NA
WP_010883977.1\|115776_117078_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_010883976.1\|117074_118388_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_010884072.1\|118488_118830_+	hypothetical protein	NA	NA	NA	NA
WP_010883975.1\|118917_119439_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_010883974.1\|119781_120756_+	iron-siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010883973.1\|120752_121676_+	DUF2470 domain-containing protein	NA	NA	NA	NA
WP_010883972.1\|121672_122647_+	iron ABC transporter permease	NA	NA	NA	NA
WP_010883971.1\|122619_123675_+	iron ABC transporter permease	NA	NA	NA	NA
WP_010883970.1\|123671_124481_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.7e-16	31.2
WP_010883969.1\|125776_127045_+	sodium:proton antiporter	A0A2H4J178	uncultured_Caudovirales_phage	7.3e-38	40.6
WP_010883968.1\|127268_128282_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_010884022.1\|128297_129281_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_010884035.1\|129645_130359_+	DUF2259 domain-containing protein	NA	NA	NA	NA
WP_010884077.1\|130457_130805_+	hypothetical protein	NA	NA	NA	NA
WP_082865520.1\|130766_131969_-\|transposase	IS4-like element ISDra7 family transposase	NA	NA	NA	NA
WP_010884071.1\|133449_134049_-	DUF3592 domain-containing protein	NA	NA	NA	NA
WP_010883967.1\|134229_136590_-	glycerophosphoryl diester phosphodiesterase	A0A2P1N091	Streptomyces_phage	3.2e-07	36.0
WP_010884021.1\|136597_136861_-	thioredoxin	NA	NA	NA	NA
WP_010883966.1\|136853_137918_-	ribonucleotide-diphosphate reductase subunit beta	A0A142F1R6	Bacillus_phage	7.8e-86	50.8
WP_010883965.1\|137905_140014_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	R4JDX9	Bacillus_phage	6.8e-190	47.5
WP_010883964.1\|139977_140403_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	S5MA49	Bacillus_phage	5.1e-12	33.3
WP_010883963.1\|140559_141003_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_010884065.1\|140982_141174_+	hypothetical protein	NA	NA	NA	NA
WP_010883962.1\|141475_142510_-\|integrase	tyrosine-type recombinase/integrase	W8EHC2	Mycobacterium_phage	1.3e-08	33.3
WP_063653103.1\|142667_143843_-\|transposase	IS4-like element ISDra7 family transposase	NA	NA	NA	NA
WP_010884020.1\|144068_145052_+\|transposase	IS4-like element ISDra1 family transposase	NA	NA	NA	NA
144639:144664	attR	NA	NA	NA	NA
WP_081816080.1\|145475_146357_+	hypothetical protein	A0A1V0SK86	Klosneuvirus	6.6e-30	27.6
WP_010884034.1\|146549_147182_+	RNA ligase family protein	A0A248SJ81	Salicola_phage	5.5e-55	49.0
WP_010884064.1\|147178_148036_+	TIGR02452 family protein	G3MBH6	Bacillus_virus	7.6e-39	38.4
WP_010884033.1\|148011_149253_+	AAA family ATPase	D5GVP0	Campylobacter_virus	7.2e-06	31.4
WP_010884032.1\|149336_150296_-	alpha/beta hydrolase	A0A218MNI3	uncultured_virus	6.0e-61	40.8
WP_010884031.1\|150294_150633_+	hypothetical protein	NA	NA	NA	NA
WP_010884030.1\|151387_152416_-	RNA ligase (ATP)	D4N471	Pseudomonas_phage	9.4e-12	24.3
WP_010883960.1\|152656_153751_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	1.3e-14	34.0
WP_010883959.1\|153933_154659_-	DNA starvation/stationary phase protection protein	A0A0A7RTZ1	Clostridium_phage	1.4e-06	24.6
WP_010883958.1\|154858_155518_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.8e-25	33.0
WP_010883957.1\|155514_156870_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	4.0e-10	23.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP015081

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP015083

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection