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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011531 Bacteroides dorei CL03T12C01 chromosome, complete genome 1 crisprs WYL,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,PD-DExK,csa3,DinG,PrimPol,DEDDh,RT 0 8 2 2

Results visualization

1. NZ_CP011531
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011531_1 564301-566628 TypeI I-C:NA
35 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP011531_1 1.5|564595|33|NZ_CP011531|CRT,PILER-CR,CRISPRCasFinder 564595-564627 33 MG945488 UNVERIFIED: Microviridae sp. isolate 1133-1602, complete genome 795-827 1 0.97
NZ_CP011531_1 1.5|564595|33|NZ_CP011531|CRT,PILER-CR,CRISPRCasFinder 564595-564627 33 MG945572 UNVERIFIED: Microviridae sp. isolate 3523-1602, complete genome 798-830 2 0.939
NZ_CP011531_1 1.9|564857|33|NZ_CP011531|CRT,PILER-CR,CRISPRCasFinder 564857-564889 33 MG945488 UNVERIFIED: Microviridae sp. isolate 1133-1602, complete genome 5480-5512 2 0.939
NZ_CP011531_1 1.18|565447|34|NZ_CP011531|CRT,PILER-CR,CRISPRCasFinder 565447-565480 34 MG945488 UNVERIFIED: Microviridae sp. isolate 1133-1602, complete genome 672-705 4 0.882
NZ_CP011531_1 1.18|565447|34|NZ_CP011531|CRT,PILER-CR,CRISPRCasFinder 565447-565480 34 MG945572 UNVERIFIED: Microviridae sp. isolate 3523-1602, complete genome 675-708 4 0.882
NZ_CP011531_1 1.9|564857|33|NZ_CP011531|CRT,PILER-CR,CRISPRCasFinder 564857-564889 33 MG945572 UNVERIFIED: Microviridae sp. isolate 3523-1602, complete genome 5633-5665 5 0.848
NZ_CP011531_1 1.16|565316|33|NZ_CP011531|CRT,PILER-CR,CRISPRCasFinder 565316-565348 33 MG945486 UNVERIFIED: Microviridae sp. isolate 957-18011, complete genome 2036-2068 7 0.788
NZ_CP011531_1 1.19|565513|35|NZ_CP011531|CRT,PILER-CR,CRISPRCasFinder 565513-565547 35 MG945572 UNVERIFIED: Microviridae sp. isolate 3523-1602, complete genome 3390-3424 7 0.8
NZ_CP011531_1 1.1|564333|33|NZ_CP011531|CRT 564333-564365 33 MN694639 Marine virus AFVG_250M766, complete genome 16842-16874 8 0.758
NZ_CP011531_1 1.1|564333|33|NZ_CP011531|CRT 564333-564365 33 AP013378 Uncultured Mediterranean phage uvMED DNA, complete genome, group G14, isolate: uvMED-CGR-U-MedDCM-OCT-S23-C32 25101-25133 8 0.758
NZ_CP011531_1 1.5|564595|33|NZ_CP011531|CRT,PILER-CR,CRISPRCasFinder 564595-564627 33 MK765590 Tortoise microvirus 40 isolate 40_SP_83, complete genome 5237-5269 8 0.758
NZ_CP011531_1 1.7|564726|33|NZ_CP011531|CRT,PILER-CR,CRISPRCasFinder 564726-564758 33 MN693393 Marine virus AFVG_25M434, complete genome 33164-33196 8 0.758
NZ_CP011531_1 1.11|564988|35|NZ_CP011531|CRT,PILER-CR,CRISPRCasFinder 564988-565022 35 NZ_CP045273 Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence 139712-139746 10 0.714
NZ_CP011531_1 1.16|565316|33|NZ_CP011531|CRT,PILER-CR,CRISPRCasFinder 565316-565348 33 NZ_AP014640 Leptolyngbya boryana IAM M-101 plasmid pLBX 204101-204133 10 0.697
NZ_CP011531_1 1.16|565316|33|NZ_CP011531|CRT,PILER-CR,CRISPRCasFinder 565316-565348 33 NZ_AP018205 Leptolyngbya boryana NIES-2135 plasmid plasmid2 DNA, complete genome 488066-488098 10 0.697

1. spacer 1.5|564595|33|NZ_CP011531|CRT,PILER-CR,CRISPRCasFinder matches to MG945488 (UNVERIFIED: Microviridae sp. isolate 1133-1602, complete genome) position: , mismatch: 1, identity: 0.97

gaactaaggctattaacgtaactcgcaacgtac	CRISPR spacer
gaactaaggctgttaacgtaactcgcaacgtac	Protospacer
***********.*********************

2. spacer 1.5|564595|33|NZ_CP011531|CRT,PILER-CR,CRISPRCasFinder matches to MG945572 (UNVERIFIED: Microviridae sp. isolate 3523-1602, complete genome) position: , mismatch: 2, identity: 0.939

gaactaaggctattaacgtaactcgcaacgtac	CRISPR spacer
gcactaaggctgttaacgtaactcgcaacgtac	Protospacer
* *********.*********************

3. spacer 1.9|564857|33|NZ_CP011531|CRT,PILER-CR,CRISPRCasFinder matches to MG945488 (UNVERIFIED: Microviridae sp. isolate 1133-1602, complete genome) position: , mismatch: 2, identity: 0.939

actcgctcagaataatttccaagaccatccaaa	CRISPR spacer
actcgctcagaataatttccaagaccatcgaga	Protospacer
***************************** *.*

4. spacer 1.18|565447|34|NZ_CP011531|CRT,PILER-CR,CRISPRCasFinder matches to MG945488 (UNVERIFIED: Microviridae sp. isolate 1133-1602, complete genome) position: , mismatch: 4, identity: 0.882

gcattatcatatcttattattcactaactcgaaa	CRISPR spacer
gcattatcatctcttattattcacaaactcggag	Protospacer
********** ************* ******.*.

5. spacer 1.18|565447|34|NZ_CP011531|CRT,PILER-CR,CRISPRCasFinder matches to MG945572 (UNVERIFIED: Microviridae sp. isolate 3523-1602, complete genome) position: , mismatch: 4, identity: 0.882

gcattatcatatcttattattcactaactcgaaa	CRISPR spacer
gcattatcatctcttattattcacaaactcggag	Protospacer
********** ************* ******.*.

6. spacer 1.9|564857|33|NZ_CP011531|CRT,PILER-CR,CRISPRCasFinder matches to MG945572 (UNVERIFIED: Microviridae sp. isolate 3523-1602, complete genome) position: , mismatch: 5, identity: 0.848

actcgctcagaataatttccaagaccatccaaa	CRISPR spacer
actcgctcagaataatgtccaagacctgcgaga	Protospacer
**************** *********  * *.*

7. spacer 1.16|565316|33|NZ_CP011531|CRT,PILER-CR,CRISPRCasFinder matches to MG945486 (UNVERIFIED: Microviridae sp. isolate 957-18011, complete genome) position: , mismatch: 7, identity: 0.788

ggttaatcagactaatatcgatattaaccgtga	CRISPR spacer
ggtcaatccgactaatatcgatattagtcggtc	Protospacer
***.**** *****************..**   

8. spacer 1.19|565513|35|NZ_CP011531|CRT,PILER-CR,CRISPRCasFinder matches to MG945572 (UNVERIFIED: Microviridae sp. isolate 3523-1602, complete genome) position: , mismatch: 7, identity: 0.8

ctcacttcttctggatcttggtcttatcagtcagc	CRISPR spacer
ttgacttcttctggtgcttggtcttatcagtctat	Protospacer
.* ***********  **************** ..

9. spacer 1.1|564333|33|NZ_CP011531|CRT matches to MN694639 (Marine virus AFVG_250M766, complete genome) position: , mismatch: 8, identity: 0.758

tttatggaagcagaagtaaaacaagtaatcaaa	CRISPR spacer
gatatggaagcagaaataaaaaaagtaaaagat	Protospacer
  *************.***** ******  .* 

10. spacer 1.1|564333|33|NZ_CP011531|CRT matches to AP013378 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G14, isolate: uvMED-CGR-U-MedDCM-OCT-S23-C32) position: , mismatch: 8, identity: 0.758

tttatggaagcagaagtaaaacaagtaatcaaa	CRISPR spacer
agaatggaagcagaagtaaaaaaattaaaaaca	Protospacer
   ****************** ** ***  * *

11. spacer 1.5|564595|33|NZ_CP011531|CRT,PILER-CR,CRISPRCasFinder matches to MK765590 (Tortoise microvirus 40 isolate 40_SP_83, complete genome) position: , mismatch: 8, identity: 0.758

gaactaaggctattaacgtaactcgcaacgtac	CRISPR spacer
gtgcaactgctattaacatagctcgcaacgtat	Protospacer
* .* *  *********.**.***********.

12. spacer 1.7|564726|33|NZ_CP011531|CRT,PILER-CR,CRISPRCasFinder matches to MN693393 (Marine virus AFVG_25M434, complete genome) position: , mismatch: 8, identity: 0.758

atgccaattcctaaagaacttactgacataaag	CRISPR spacer
agacaatttcctaaagaacttccttacataact	Protospacer
* .* * ************** ** ******  

13. spacer 1.11|564988|35|NZ_CP011531|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 10, identity: 0.714

ttttaagttcgataaaattattttcttctttaatt	CRISPR spacer
aaatcacctccataaaattattttcatctttaaac	Protospacer
   * * .** ************** ******* .

14. spacer 1.16|565316|33|NZ_CP011531|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP014640 (Leptolyngbya boryana IAM M-101 plasmid pLBX) position: , mismatch: 10, identity: 0.697

ggttaatcagactaatatcgatattaaccgtga	CRISPR spacer
caggatcgagacgaatatcgatatcaaccgtgg	Protospacer
 .  * . **** ***********.*******.

15. spacer 1.16|565316|33|NZ_CP011531|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP018205 (Leptolyngbya boryana NIES-2135 plasmid plasmid2 DNA, complete genome) position: , mismatch: 10, identity: 0.697

ggttaatcagactaatatcgatattaaccgtga	CRISPR spacer
caggatcgagacgaatatcgatatcaaccgtgg	Protospacer
 .  * . **** ***********.*******.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2003283 : 2061359 56 Streptococcus_phage(25.0%) transposase,integrase attL 1993231:1993247|attR 2059731:2059747
DBSCAN-SWA_2 4059999 : 4074382 24 Riemerella_phage(20.0%) NA NA
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP011531.1|WP_007856101.1|2363709_2364126_-|PcfK-like-family-protein 2363709_2364126_- 138 aa aa 40 NA NA No NA
NZ_CP011531.1|WP_004319134.1|4170808_4171264_-|PcfK-like-family-protein 4170808_4171264_- 151 aa aa 40 NA NA No NA