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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011685 Staphylococcus aureus strain ZJ5499 chromosome, complete genome 11 crisprs cas3,DEDDh,DinG,csa3,RT,WYL 9 1 9 2

Results visualization

1. NZ_CP011685
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011685_1 188335-188419 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011685_2 428060-428161 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011685_3 817635-817713 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011685_4 823036-823251 Unclear NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011685_5 881016-881097 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011685_6 1671777-1671861 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011685_7 2106550-2106631 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011685_8 2122195-2122283 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011685_9 2251531-2251611 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011685_10 2263852-2263937 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011685_11 2369989-2370069 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP011685_1 1.1|188361|33|NZ_CP011685|CRISPRCasFinder 188361-188393 33 NZ_CP011685.1 1357305-1357337 0 1.0
NZ_CP011685_3 3.1|817659|31|NZ_CP011685|CRISPRCasFinder 817659-817689 31 NZ_CP011685.1 311371-311401 0 1.0
NZ_CP011685_4 4.2|823135|19|NZ_CP011685|CRT 823135-823153 19 NZ_CP011685.1 823252-823270 0 1.0
NZ_CP011685_4 4.2|823135|19|NZ_CP011685|CRT 823135-823153 19 NZ_CP011685.1 830504-830522 0 1.0
NZ_CP011685_4 4.3|823194|18|NZ_CP011685|CRT 823194-823211 18 NZ_CP011685.1 188317-188334 0 1.0
NZ_CP011685_4 4.3|823194|18|NZ_CP011685|CRT 823194-823211 18 NZ_CP011685.1 311401-311418 0 1.0
NZ_CP011685_4 4.3|823194|18|NZ_CP011685|CRT 823194-823211 18 NZ_CP011685.1 651407-651424 0 1.0
NZ_CP011685_4 4.3|823194|18|NZ_CP011685|CRT 823194-823211 18 NZ_CP011685.1 775794-775811 0 1.0
NZ_CP011685_4 4.3|823194|18|NZ_CP011685|CRT 823194-823211 18 NZ_CP011685.1 881098-881115 0 1.0
NZ_CP011685_4 4.3|823194|18|NZ_CP011685|CRT 823194-823211 18 NZ_CP011685.1 1047086-1047103 0 1.0
NZ_CP011685_4 4.3|823194|18|NZ_CP011685|CRT 823194-823211 18 NZ_CP011685.1 1145572-1145589 0 1.0
NZ_CP011685_4 4.3|823194|18|NZ_CP011685|CRT 823194-823211 18 NZ_CP011685.1 1357203-1357220 0 1.0
NZ_CP011685_4 4.3|823194|18|NZ_CP011685|CRT 823194-823211 18 NZ_CP011685.1 1671862-1671879 0 1.0
NZ_CP011685_4 4.3|823194|18|NZ_CP011685|CRT 823194-823211 18 NZ_CP011685.1 1686382-1686399 0 1.0
NZ_CP011685_4 4.3|823194|18|NZ_CP011685|CRT 823194-823211 18 NZ_CP011685.1 1857308-1857325 0 1.0
NZ_CP011685_4 4.3|823194|18|NZ_CP011685|CRT 823194-823211 18 NZ_CP011685.1 2005715-2005732 0 1.0
NZ_CP011685_7 7.1|2106574|34|NZ_CP011685|CRISPRCasFinder 2106574-2106607 34 NZ_CP011685.1 817634-817667 0 1.0
NZ_CP011685_7 7.1|2106574|34|NZ_CP011685|CRISPRCasFinder 2106574-2106607 34 NZ_CP011685.1 1145564-1145597 0 1.0
NZ_CP011685_3 3.1|817659|31|NZ_CP011685|CRISPRCasFinder 817659-817689 31 NZ_CP011685.1 311316-311346 1 0.968
NZ_CP011685_3 3.1|817659|31|NZ_CP011685|CRISPRCasFinder 817659-817689 31 NZ_CP011685.1 1706259-1706289 1 0.968
NZ_CP011685_4 4.2|823135|19|NZ_CP011685|CRT 823135-823153 19 NZ_CP011685.1 776952-776970 1 0.947
NZ_CP011685_4 4.2|823135|19|NZ_CP011685|CRT 823135-823153 19 NZ_CP011685.1 1357319-1357337 1 0.947
NZ_CP011685_4 4.2|823135|19|NZ_CP011685|CRT 823135-823153 19 NZ_CP011685.1 2005773-2005791 1 0.947
NZ_CP011685_4 4.2|823135|19|NZ_CP011685|CRT 823135-823153 19 NZ_CP011685.1 2106523-2106541 1 0.947
NZ_CP011685_4 4.2|823135|19|NZ_CP011685|CRT 823135-823153 19 NZ_CP011685.1 2106640-2106658 1 0.947
NZ_CP011685_4 4.2|823135|19|NZ_CP011685|CRT 823135-823153 19 NZ_CP011685.1 2359169-2359187 1 0.947
NZ_CP011685_4 4.3|823194|18|NZ_CP011685|CRT 823194-823211 18 NZ_CP011685.1 311346-311363 1 0.944
NZ_CP011685_4 4.3|823194|18|NZ_CP011685|CRT 823194-823211 18 NZ_CP011685.1 951140-951157 1 0.944
NZ_CP011685_4 4.3|823194|18|NZ_CP011685|CRT 823194-823211 18 NZ_CP011685.1 1151221-1151238 1 0.944
NZ_CP011685_4 4.3|823194|18|NZ_CP011685|CRT 823194-823211 18 NZ_CP011685.1 1361686-1361703 1 0.944
NZ_CP011685_4 4.3|823194|18|NZ_CP011685|CRT 823194-823211 18 NZ_CP011685.1 1407177-1407194 1 0.944
NZ_CP011685_4 4.3|823194|18|NZ_CP011685|CRT 823194-823211 18 NZ_CP011685.1 1706123-1706140 1 0.944
NZ_CP011685_4 4.3|823194|18|NZ_CP011685|CRT 823194-823211 18 NZ_CP011685.1 1706356-1706373 1 0.944
NZ_CP011685_4 4.3|823194|18|NZ_CP011685|CRT 823194-823211 18 NZ_CP011685.1 2015065-2015082 1 0.944
NZ_CP011685_4 4.3|823194|18|NZ_CP011685|CRT 823194-823211 18 NZ_CP011685.1 2369973-2369990 1 0.944
NZ_CP011685_5 5.1|881040|34|NZ_CP011685|CRISPRCasFinder 881040-881073 34 NZ_CP011685.1 1357304-1357337 1 0.971
NZ_CP011685_6 6.1|1671803|33|NZ_CP011685|CRISPRCasFinder 1671803-1671835 33 NZ_CP011685.1 1357305-1357337 1 0.97
NZ_CP011685_7 7.1|2106574|34|NZ_CP011685|CRISPRCasFinder 2106574-2106607 34 NZ_CP011685.1 1798537-1798570 1 0.971
NZ_CP011685_11 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder 2370014-2370044 31 NZ_CP011685.1 830320-830350 1 0.968
NZ_CP011685_11 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder 2370014-2370044 31 NZ_CP011685.1 830376-830406 1 0.968
NZ_CP011685_1 1.1|188361|33|NZ_CP011685|CRISPRCasFinder 188361-188393 33 NZ_CP011685.1 1445653-1445685 2 0.939
NZ_CP011685_4 4.1|823076|19|NZ_CP011685|CRT 823076-823094 19 NZ_CP011685.1 387700-387718 2 0.895
NZ_CP011685_4 4.1|823076|19|NZ_CP011685|CRT 823076-823094 19 NZ_CP011685.1 651465-651483 2 0.895
NZ_CP011685_4 4.1|823076|19|NZ_CP011685|CRT 823076-823094 19 NZ_CP011685.1 1047143-1047161 2 0.895
NZ_CP011685_4 4.1|823076|19|NZ_CP011685|CRT 823076-823094 19 NZ_CP011685.1 1151163-1151181 2 0.895
NZ_CP011685_4 4.1|823076|19|NZ_CP011685|CRT 823076-823094 19 NZ_CP011685.1 1357261-1357279 2 0.895
NZ_CP011685_4 4.1|823076|19|NZ_CP011685|CRT 823076-823094 19 NZ_CP011685.1 1445711-1445729 2 0.895
NZ_CP011685_4 4.1|823076|19|NZ_CP011685|CRT 823076-823094 19 NZ_CP011685.1 2004313-2004331 2 0.895
NZ_CP011685_4 4.1|823076|19|NZ_CP011685|CRT 823076-823094 19 NZ_CP011685.1 2004372-2004390 2 0.895
NZ_CP011685_4 4.1|823076|19|NZ_CP011685|CRT 823076-823094 19 NZ_CP011685.1 2359227-2359245 2 0.895
NZ_CP011685_4 4.2|823135|19|NZ_CP011685|CRT 823135-823153 19 NZ_CP011685.1 790568-790586 2 0.895
NZ_CP011685_4 4.2|823135|19|NZ_CP011685|CRT 823135-823153 19 NZ_CP011685.1 1145685-1145703 2 0.895
NZ_CP011685_4 4.2|823135|19|NZ_CP011685|CRT 823135-823153 19 NZ_CP011685.1 1407291-1407309 2 0.895
NZ_CP011685_4 4.2|823135|19|NZ_CP011685|CRT 823135-823153 19 NZ_CP011685.1 1445653-1445671 2 0.895
NZ_CP011685_4 4.2|823135|19|NZ_CP011685|CRT 823135-823153 19 NZ_CP011685.1 2004257-2004275 2 0.895
NZ_CP011685_4 4.3|823194|18|NZ_CP011685|CRT 823194-823211 18 NZ_CP011685.1 790624-790641 2 0.889
NZ_CP011685_4 4.3|823194|18|NZ_CP011685|CRT 823194-823211 18 NZ_CP011685.1 1151276-1151293 2 0.889
NZ_CP011685_4 4.3|823194|18|NZ_CP011685|CRT 823194-823211 18 NZ_CP011685.1 1950021-1950038 2 0.889
NZ_CP011685_7 7.1|2106574|34|NZ_CP011685|CRISPRCasFinder 2106574-2106607 34 NZ_CP011685.1 1361678-1361711 2 0.941
NZ_CP011685_7 7.1|2106574|34|NZ_CP011685|CRISPRCasFinder 2106574-2106607 34 NZ_CP011685.1 2807385-2807418 2 0.941
NZ_CP011685_11 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder 2370014-2370044 31 NZ_CP011685.1 89846-89876 2 0.935
NZ_CP011685_11 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder 2370014-2370044 31 NZ_CP011685.1 387702-387732 2 0.935
NZ_CP011685_11 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder 2370014-2370044 31 NZ_CP011685.1 651467-651497 2 0.935
NZ_CP011685_11 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder 2370014-2370044 31 NZ_CP011685.1 830432-830462 2 0.935
NZ_CP011685_11 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder 2370014-2370044 31 NZ_CP011685.1 881352-881382 2 0.935
NZ_CP011685_11 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder 2370014-2370044 31 NZ_CP011685.1 1047129-1047159 2 0.935
NZ_CP011685_11 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder 2370014-2370044 31 NZ_CP011685.1 1151165-1151195 2 0.935
NZ_CP011685_11 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder 2370014-2370044 31 NZ_CP011685.1 1357263-1357293 2 0.935
NZ_CP011685_11 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder 2370014-2370044 31 NZ_CP011685.1 1445697-1445727 2 0.935
NZ_CP011685_11 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder 2370014-2370044 31 NZ_CP011685.1 1686441-1686471 2 0.935
NZ_CP011685_11 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder 2370014-2370044 31 NZ_CP011685.1 2004358-2004388 2 0.935
NZ_CP011685_11 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder 2370014-2370044 31 NZ_CP011685.1 2359213-2359243 2 0.935
NZ_CP011685_11 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder 2370014-2370044 31 NZ_CP011685.1 2534695-2534725 2 0.935

1. spacer 1.1|188361|33|NZ_CP011685|CRISPRCasFinder matches to position: 1357305-1357337, mismatch: 0, identity: 1.0

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*********************************

2. spacer 3.1|817659|31|NZ_CP011685|CRISPRCasFinder matches to position: 311371-311401, mismatch: 0, identity: 1.0

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattgcc	Protospacer
*******************************

3. spacer 4.2|823135|19|NZ_CP011685|CRT matches to position: 823252-823270, mismatch: 0, identity: 1.0

attggaaatccaatttctc	CRISPR spacer
attggaaatccaatttctc	Protospacer
*******************

4. spacer 4.2|823135|19|NZ_CP011685|CRT matches to position: 830504-830522, mismatch: 0, identity: 1.0

attggaaatccaatttctc	CRISPR spacer
attggaaatccaatttctc	Protospacer
*******************

5. spacer 4.3|823194|18|NZ_CP011685|CRT matches to position: 188317-188334, mismatch: 0, identity: 1.0

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaaattctc	Protospacer
******************

6. spacer 4.3|823194|18|NZ_CP011685|CRT matches to position: 311401-311418, mismatch: 0, identity: 1.0

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaaattctc	Protospacer
******************

7. spacer 4.3|823194|18|NZ_CP011685|CRT matches to position: 651407-651424, mismatch: 0, identity: 1.0

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaaattctc	Protospacer
******************

8. spacer 4.3|823194|18|NZ_CP011685|CRT matches to position: 775794-775811, mismatch: 0, identity: 1.0

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaaattctc	Protospacer
******************

9. spacer 4.3|823194|18|NZ_CP011685|CRT matches to position: 881098-881115, mismatch: 0, identity: 1.0

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaaattctc	Protospacer
******************

10. spacer 4.3|823194|18|NZ_CP011685|CRT matches to position: 1047086-1047103, mismatch: 0, identity: 1.0

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaaattctc	Protospacer
******************

11. spacer 4.3|823194|18|NZ_CP011685|CRT matches to position: 1145572-1145589, mismatch: 0, identity: 1.0

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaaattctc	Protospacer
******************

12. spacer 4.3|823194|18|NZ_CP011685|CRT matches to position: 1357203-1357220, mismatch: 0, identity: 1.0

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaaattctc	Protospacer
******************

13. spacer 4.3|823194|18|NZ_CP011685|CRT matches to position: 1671862-1671879, mismatch: 0, identity: 1.0

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaaattctc	Protospacer
******************

14. spacer 4.3|823194|18|NZ_CP011685|CRT matches to position: 1686382-1686399, mismatch: 0, identity: 1.0

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaaattctc	Protospacer
******************

15. spacer 4.3|823194|18|NZ_CP011685|CRT matches to position: 1857308-1857325, mismatch: 0, identity: 1.0

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaaattctc	Protospacer
******************

16. spacer 4.3|823194|18|NZ_CP011685|CRT matches to position: 2005715-2005732, mismatch: 0, identity: 1.0

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaaattctc	Protospacer
******************

17. spacer 7.1|2106574|34|NZ_CP011685|CRISPRCasFinder matches to position: 817634-817667, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

18. spacer 7.1|2106574|34|NZ_CP011685|CRISPRCasFinder matches to position: 1145564-1145597, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

19. spacer 3.1|817659|31|NZ_CP011685|CRISPRCasFinder matches to position: 311316-311346, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattacc	Protospacer
****************************.**

20. spacer 3.1|817659|31|NZ_CP011685|CRISPRCasFinder matches to position: 1706259-1706289, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttccattgcc	Protospacer
*********************** *******

21. spacer 4.2|823135|19|NZ_CP011685|CRT matches to position: 776952-776970, mismatch: 1, identity: 0.947

attggaaatccaatttctc	CRISPR spacer
attgggaatccaatttctc	Protospacer
*****.*************

22. spacer 4.2|823135|19|NZ_CP011685|CRT matches to position: 1357319-1357337, mismatch: 1, identity: 0.947

attggaaatccaatttctc	CRISPR spacer
attgggaatccaatttctc	Protospacer
*****.*************

23. spacer 4.2|823135|19|NZ_CP011685|CRT matches to position: 2005773-2005791, mismatch: 1, identity: 0.947

attggaaatccaatttctc	CRISPR spacer
attgggaatccaatttctc	Protospacer
*****.*************

24. spacer 4.2|823135|19|NZ_CP011685|CRT matches to position: 2106523-2106541, mismatch: 1, identity: 0.947

attggaaatccaatttctc	CRISPR spacer
attgggaatccaatttctc	Protospacer
*****.*************

25. spacer 4.2|823135|19|NZ_CP011685|CRT matches to position: 2106640-2106658, mismatch: 1, identity: 0.947

attggaaatccaatttctc	CRISPR spacer
attgggaatccaatttctc	Protospacer
*****.*************

26. spacer 4.2|823135|19|NZ_CP011685|CRT matches to position: 2359169-2359187, mismatch: 1, identity: 0.947

attggaaatccaatttctc	CRISPR spacer
attgggaatccaatttctc	Protospacer
*****.*************

27. spacer 4.3|823194|18|NZ_CP011685|CRT matches to position: 311346-311363, mismatch: 1, identity: 0.944

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaatttctc	Protospacer
************ *****

28. spacer 4.3|823194|18|NZ_CP011685|CRT matches to position: 951140-951157, mismatch: 1, identity: 0.944

tttcttttcgaaattctc	CRISPR spacer
tttcttttagaaattctc	Protospacer
******** *********

29. spacer 4.3|823194|18|NZ_CP011685|CRT matches to position: 1151221-1151238, mismatch: 1, identity: 0.944

tttcttttcgaaattctc	CRISPR spacer
tttctttttgaaattctc	Protospacer
********.*********

30. spacer 4.3|823194|18|NZ_CP011685|CRT matches to position: 1361686-1361703, mismatch: 1, identity: 0.944

tttcttttcgaaattctc	CRISPR spacer
tttcttatcgaaattctc	Protospacer
****** ***********

31. spacer 4.3|823194|18|NZ_CP011685|CRT matches to position: 1407177-1407194, mismatch: 1, identity: 0.944

tttcttttcgaaattctc	CRISPR spacer
tttcttttcgaaaatctc	Protospacer
************* ****

32. spacer 4.3|823194|18|NZ_CP011685|CRT matches to position: 1706123-1706140, mismatch: 1, identity: 0.944

tttcttttcgaaattctc	CRISPR spacer
tttctttacgaaattctc	Protospacer
******* **********

33. spacer 4.3|823194|18|NZ_CP011685|CRT matches to position: 1706356-1706373, mismatch: 1, identity: 0.944

tttcttttcgaaattctc	CRISPR spacer
tttctttacgaaattctc	Protospacer
******* **********

34. spacer 4.3|823194|18|NZ_CP011685|CRT matches to position: 2015065-2015082, mismatch: 1, identity: 0.944

tttcttttcgaaattctc	CRISPR spacer
tttcctttcgaaattctc	Protospacer
****.*************

35. spacer 4.3|823194|18|NZ_CP011685|CRT matches to position: 2369973-2369990, mismatch: 1, identity: 0.944

tttcttttcgaaattctc	CRISPR spacer
tttctttttgaaattctc	Protospacer
********.*********

36. spacer 5.1|881040|34|NZ_CP011685|CRISPRCasFinder matches to position: 1357304-1357337, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

37. spacer 6.1|1671803|33|NZ_CP011685|CRISPRCasFinder matches to position: 1357305-1357337, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** ************

38. spacer 7.1|2106574|34|NZ_CP011685|CRISPRCasFinder matches to position: 1798537-1798570, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttgtgttgg	Protospacer
*************************.********

39. spacer 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder matches to position: 830320-830350, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

40. spacer 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder matches to position: 830376-830406, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

41. spacer 1.1|188361|33|NZ_CP011685|CRISPRCasFinder matches to position: 1445653-1445685, mismatch: 2, identity: 0.939

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tggaccccaacaaagagaaattgtattcccaat	Protospacer
***.******************* *********

42. spacer 4.1|823076|19|NZ_CP011685|CRT matches to position: 387700-387718, mismatch: 2, identity: 0.895

ctgacttatcgtaagcttc	CRISPR spacer
ctgacttttcgtcagcttc	Protospacer
******* **** ******

43. spacer 4.1|823076|19|NZ_CP011685|CRT matches to position: 651465-651483, mismatch: 2, identity: 0.895

ctgacttatcgtaagcttc	CRISPR spacer
ctgacttttcgtcagcttc	Protospacer
******* **** ******

44. spacer 4.1|823076|19|NZ_CP011685|CRT matches to position: 1047143-1047161, mismatch: 2, identity: 0.895

ctgacttatcgtaagcttc	CRISPR spacer
ctgacttttcgtcagcttc	Protospacer
******* **** ******

45. spacer 4.1|823076|19|NZ_CP011685|CRT matches to position: 1151163-1151181, mismatch: 2, identity: 0.895

ctgacttatcgtaagcttc	CRISPR spacer
ctgacttttcgtcagcttc	Protospacer
******* **** ******

46. spacer 4.1|823076|19|NZ_CP011685|CRT matches to position: 1357261-1357279, mismatch: 2, identity: 0.895

ctgacttatcgtaagcttc	CRISPR spacer
ctgacttttcgtcagcttc	Protospacer
******* **** ******

47. spacer 4.1|823076|19|NZ_CP011685|CRT matches to position: 1445711-1445729, mismatch: 2, identity: 0.895

ctgacttatcgtaagcttc	CRISPR spacer
ctgacttttcgtcagcttc	Protospacer
******* **** ******

48. spacer 4.1|823076|19|NZ_CP011685|CRT matches to position: 2004313-2004331, mismatch: 2, identity: 0.895

ctgacttatcgtaagcttc	CRISPR spacer
ctgacttttcgtcagcttc	Protospacer
******* **** ******

49. spacer 4.1|823076|19|NZ_CP011685|CRT matches to position: 2004372-2004390, mismatch: 2, identity: 0.895

ctgacttatcgtaagcttc	CRISPR spacer
ctgacttttcgtcagcttc	Protospacer
******* **** ******

50. spacer 4.1|823076|19|NZ_CP011685|CRT matches to position: 2359227-2359245, mismatch: 2, identity: 0.895

ctgacttatcgtaagcttc	CRISPR spacer
ctgacttttcgtcagcttc	Protospacer
******* **** ******

51. spacer 4.2|823135|19|NZ_CP011685|CRT matches to position: 790568-790586, mismatch: 2, identity: 0.895

attggaaatccaatttctc	CRISPR spacer
attgaaaatcaaatttctc	Protospacer
****.***** ********

52. spacer 4.2|823135|19|NZ_CP011685|CRT matches to position: 1145685-1145703, mismatch: 2, identity: 0.895

attggaaatccaatttctc	CRISPR spacer
attggtgatccaatttctc	Protospacer
***** .************

53. spacer 4.2|823135|19|NZ_CP011685|CRT matches to position: 1407291-1407309, mismatch: 2, identity: 0.895

attggaaatccaatttctc	CRISPR spacer
attaggaatccaatttctc	Protospacer
***.*.*************

54. spacer 4.2|823135|19|NZ_CP011685|CRT matches to position: 1445653-1445671, mismatch: 2, identity: 0.895

attggaaatccaatttctc	CRISPR spacer
attgggaatacaatttctc	Protospacer
*****.*** *********

55. spacer 4.2|823135|19|NZ_CP011685|CRT matches to position: 2004257-2004275, mismatch: 2, identity: 0.895

attggaaatccaatttctc	CRISPR spacer
attgtagatccaatttctc	Protospacer
**** *.************

56. spacer 4.3|823194|18|NZ_CP011685|CRT matches to position: 790624-790641, mismatch: 2, identity: 0.889

tttcttttcgaaattctc	CRISPR spacer
ttcctttttgaaattctc	Protospacer
**.*****.*********

57. spacer 4.3|823194|18|NZ_CP011685|CRT matches to position: 1151276-1151293, mismatch: 2, identity: 0.889

tttcttttcgaaattctc	CRISPR spacer
tttctttttgaatttctc	Protospacer
********.*** *****

58. spacer 4.3|823194|18|NZ_CP011685|CRT matches to position: 1950021-1950038, mismatch: 2, identity: 0.889

tttcttttcgaaattctc	CRISPR spacer
tttcttttcaaaagtctc	Protospacer
*********.*** ****

59. spacer 7.1|2106574|34|NZ_CP011685|CRISPRCasFinder matches to position: 1361678-1361711, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtggaatttcttatcgaaattctctgtgttgg	Protospacer
****.********* *******************

60. spacer 7.1|2106574|34|NZ_CP011685|CRISPRCasFinder matches to position: 2807385-2807418, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttttgttgg	Protospacer
*************************.* ******

61. spacer 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder matches to position: 89846-89876, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

62. spacer 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder matches to position: 387702-387732, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

63. spacer 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder matches to position: 651467-651497, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

64. spacer 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder matches to position: 830432-830462, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

65. spacer 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder matches to position: 881352-881382, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

66. spacer 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder matches to position: 1047129-1047159, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

67. spacer 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder matches to position: 1151165-1151195, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

68. spacer 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder matches to position: 1357263-1357293, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

69. spacer 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder matches to position: 1445697-1445727, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

70. spacer 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder matches to position: 1686441-1686471, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

71. spacer 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder matches to position: 2004358-2004388, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

72. spacer 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder matches to position: 2359213-2359243, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

73. spacer 11.1|2370014|31|NZ_CP011685|CRISPRCasFinder matches to position: 2534695-2534725, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP011685_10 10.1|2263878|34|NZ_CP011685|CRISPRCasFinder 2263878-2263911 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NZ_CP011685_10 10.1|2263878|34|NZ_CP011685|CRISPRCasFinder 2263878-2263911 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765

1. spacer 10.1|2263878|34|NZ_CP011685|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

2. spacer 10.1|2263878|34|NZ_CP011685|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 754863 : 762684 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 774655 : 789240 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 840146 : 855382 23 Staphylococcus_phage(66.67%) integrase,coat,terminase,capsid attL 839814:839829|attR 846236:846251
DBSCAN-SWA_4 976587 : 1028601 52 Streptococcus_phage(33.33%) bacteriocin,tRNA,protease NA
DBSCAN-SWA_5 1048639 : 1057112 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_6 1499367 : 1586490 105 Staphylococcus_phage(83.33%) terminase,plate,protease,holin,tail,tRNA,portal,capsid,integrase,head attL 1535644:1535672|attR 1580884:1580912
DBSCAN-SWA_7 1721446 : 1730489 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_8 1862177 : 1919879 54 Staphylococcus_phage(95.35%) tRNA,protease NA
DBSCAN-SWA_9 2018547 : 2126255 134 Staphylococcus_phage(84.54%) terminase,protease,holin,coat,tail,tRNA,portal,capsid,integrase,head attL 2015040:2015064|attR 2129369:2129393
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP011685.1|WP_000681968.1|2054306_2054483_-|hypothetical-protein 2054306_2054483_- 58 aa aa NA NA NA 2018547-2126255 yes
NZ_CP011685.1|WP_000990056.1|2054725_2054824_-|hypothetical-protein 2054725_2054824_- 32 aa aa NA NA NA 2018547-2126255 yes