CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015107	Flavobacterium columnare strain C#2 chromosome, complete genome	6 crisprs	PD-DExK,WYL,cas1,cas2,cas3,cas9,DEDDh,PrimPol,csa3,cas13b	2	18	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015107_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015107_1

944817-946354

Unclear

Consensus_repeat	Method
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	CRISPRCasFinder
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	CRT
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	PILER-CR

22 spacers

cas2,cas1

The CRISPR arrays of NZ_CP015107_1

>merge|NZ_CP015107|1|944817-946354|CRISPRCasFinder,CRT,PILER-CR
AATATCGTGTTTTCTAATCTTTAATCAAACCACAACAATACTTTATACAATCAATTAAAAAGCGATAATATCGTGTTTTCTAATCTTTAATCAAACCACAACAAACTACCCGACATTATAAATTTAATGATAAATATCGTGTTTTCTAATCTTTAATCAAACCACAACACTTTTGCCTTTTCAAATCTATAATATTGAATATCGTGTTTTCTAATCTTTAATCAAACCACAACTTTATGATTTTCCACCCCTCCTCTGTTTTTAATATCGTGTTTTCTAATCTTTAATCAAACCACAACGAGCCGAGTGTATCGCAAAAAATGGTTTACAATATCGTGTTTTCTAATCTTTAATCAAACCACAACAAAAACGAACCGACTAAAACCACAGCTGAGAATATCGTGTTTTCTAATCTTTAATCAAACCACAACTACCGTTACCGTAATGTGCTTTGCGCTGGAAATATCGTGTTTTCTAATCTTTAATCAAACCACAACTTTTACATTTATTACATTAACGATAAGCGAAATATCGTGTTTTCTAATCTTTAATCAAACCACAACACATTACCTTTGTAAGCTACTTTATGTTCAAATATCGTGTTTTCTAATCTTTAATCAAACCACAACTTGCCTCTTATATAGAGAAAAATAACTTGAAATATCGTGTTTTCTAATCTTTAATCAAACCACAACTCTTAATAATAAATAGGAACAGGTCATACTAATATCGTGTTTTCTAATCTTTAATCAAACCACAACCGCACCAGCATCAAAAAATTTTGATTATGAATATCGTGTTTTCTAATCTTTAATCAAACCACAACTTCCGACATCTTCTTTATTTGGCGCTCCTTAATATCGTGTTTTCTAATCTTTAATCAAACCACAACGCTAATCTATTAAGAAACCCATCCATTAAAAATATCGTGTTTTCTAATCTTTAATCAAACCACAACGGTACAAGCGGTCGTTTATTTCTTCTTTGGAATATCGTGTTTTCTAATCTTTAATCAAACCACAACAGGTTAAAAAAAATAATTTAGTAAAAGTTTAATATCGTGTTTTCTAATCTTTAATCAAACCACAACACGTAATCCTATTGATAGCGTGGCTTTTACAATATCGTGTTTTCTAATCTTTAATCAAACCACAACGATAATGAGACTAATTATGGAAGCGGTTTTAATATCGTGTTTTCTAATCTTTAATCAAACCACAACTTCAAATGGATTAACTCGTTTAACAGAATTAATATCGTGTTTTCTAATCTTTAATCAAACCACAACTCAAAATGCAATTTTATTGAATGTTGACAAATATCGTGTTTTCTAATCTTTAATCAAACCACAACTCATTTGAATTTGAAAAAATGGGCATTTGAAATATCGTGTTTTCTAATCTTTAATCAAATCGACCAGAGGGAGATTCACAAACACACCTATAATAAATATTAACTTGGTGTTTGTAAACCAACTTACGATGACTAATGTTTTGAAACGGAATATCGTGTTTTCTAATCTTTAATCAATTATAATC

>NZ_CP015107|1|1|944817-946354|CRISPRCasFinder
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	AATACTTTATACAATCAATTAAAAAGCGAT
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	AAACTACCCGACATTATAAATTTAATGATA
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	ACTTTTGCCTTTTCAAATCTATAATATTG
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	TTTATGATTTTCCACCCCTCCTCTGTTTTT
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	GAGCCGAGTGTATCGCAAAAAATGGTTTAC
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	AAAAACGAACCGACTAAAACCACAGCTGAG
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	TACCGTTACCGTAATGTGCTTTGCGCTGGA
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	TTTTACATTTATTACATTAACGATAAGCGA
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	ACATTACCTTTGTAAGCTACTTTATGTTCA
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	TTGCCTCTTATATAGAGAAAAATAACTTGA
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	TCTTAATAATAAATAGGAACAGGTCATACT
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	CGCACCAGCATCAAAAAATTTTGATTATG
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	TTCCGACATCTTCTTTATTTGGCGCTCCTT
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	GCTAATCTATTAAGAAACCCATCCATTAAA
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	GGTACAAGCGGTCGTTTATTTCTTCTTTGG
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	AGGTTAAAAAAAATAATTTAGTAAAAGTTT
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	ACGTAATCCTATTGATAGCGTGGCTTTTAC
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	GATAATGAGACTAATTATGGAAGCGGTTTT
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	TTCAAATGGATTAACTCGTTTAACAGAATT
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	TCAAAATGCAATTTTATTGAATGTTGACA
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	TCATTTGAATTTGAAAAAATGGGCATTTGA
AATATCGTGTTTTCTAATCTTTAATCAAATCGACCA	GAGGGAGATTCACAAACACACCTATAATAAATATTAACTTGGTGTTTGTAAACCAACTTACGATGACTAATGTTTTGAAACGG
AATATCGTGTTTTCTAATCTTTAATCAATTATAATC

>NZ_CP015107|1|1|944817-946235|CRT
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	AATACTTTATACAATCAATTAAAAAGCGAT
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	AAACTACCCGACATTATAAATTTAATGATA
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	ACTTTTGCCTTTTCAAATCTATAATATTG
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	TTTATGATTTTCCACCCCTCCTCTGTTTTT
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	GAGCCGAGTGTATCGCAAAAAATGGTTTAC
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	AAAAACGAACCGACTAAAACCACAGCTGAG
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	TACCGTTACCGTAATGTGCTTTGCGCTGGA
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	TTTTACATTTATTACATTAACGATAAGCGA
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	ACATTACCTTTGTAAGCTACTTTATGTTCA
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	TTGCCTCTTATATAGAGAAAAATAACTTGA
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	TCTTAATAATAAATAGGAACAGGTCATACT
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	CGCACCAGCATCAAAAAATTTTGATTATG
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	TTCCGACATCTTCTTTATTTGGCGCTCCTT
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	GCTAATCTATTAAGAAACCCATCCATTAAA
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	GGTACAAGCGGTCGTTTATTTCTTCTTTGG
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	AGGTTAAAAAAAATAATTTAGTAAAAGTTT
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	ACGTAATCCTATTGATAGCGTGGCTTTTAC
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	GATAATGAGACTAATTATGGAAGCGGTTTT
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	TTCAAATGGATTAACTCGTTTAACAGAATT
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	TCAAAATGCAATTTTATTGAATGTTGACA
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	TCATTTGAATTTGAAAAAATGGGCATTTGA
AATATCGTGTTTTCTAATCTTTAATCAAATCGACCA

>NZ_CP015107|1|1|944949-946169|PILER-CR
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	ACTTTTGCCTTTTCAAATCTATAATATTG
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	TTTATGATTTTCCACCCCTCCTCTGTTTTT
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	GAGCCGAGTGTATCGCAAAAAATGGTTTAC
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	AAAAACGAACCGACTAAAACCACAGCTGAG
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	TACCGTTACCGTAATGTGCTTTGCGCTGGA
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	TTTTACATTTATTACATTAACGATAAGCGA
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	ACATTACCTTTGTAAGCTACTTTATGTTCA
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	TTGCCTCTTATATAGAGAAAAATAACTTGA
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	TCTTAATAATAAATAGGAACAGGTCATACT
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	CGCACCAGCATCAAAAAATTTTGATTATG
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	TTCCGACATCTTCTTTATTTGGCGCTCCTT
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	GCTAATCTATTAAGAAACCCATCCATTAAA
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	GGTACAAGCGGTCGTTTATTTCTTCTTTGG
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	AGGTTAAAAAAAATAATTTAGTAAAAGTTT
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	ACGTAATCCTATTGATAGCGTGGCTTTTAC
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	GATAATGAGACTAATTATGGAAGCGGTTTT
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	TTCAAATGGATTAACTCGTTTAACAGAATT
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC	TCAAAATGCAATTTTATTGAATGTTGACA
AATATCGTGTTTTCTAATCTTTAATCAAACCACAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015107.1\|WP_158512426.1\|941708_941858_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015107.1\|WP_063743336.1\|952471_953152_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP015107.1\|WP_063743339.1\|953452_955573_+\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|366234
NZ_CP015107.1\|WP_063743328.1\|939971_941309_+\|dihydroorotase	unknown	unknown	gnl\|CDD\|181716
NZ_CP015107.1\|WP_063743324.1\|936613_937366_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|223955
NZ_CP015107.1\|WP_060381531.1\|937681_938431_-\|uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|119440
NZ_CP015107.1\|WP_063743346.1\|957730_958165_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015107.1\|WP_063743344.1\|956895_957744_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|309640
NZ_CP015107.1\|WP_063743330.1\|942364_943351_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187539
NZ_CP015107.1\|WP_060381530.1\|938463_939129_-\|DUF4271-domain-containing-protein	unknown	unknown	gnl\|CDD\|379465
NZ_CP015107.1\|WP_063743338.1\|953245_953443_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015107.1\|WP_060381524.1\|944380_944710_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP015107.1\|WP_060381527.1\|941327_941708_+\|DUF4296-domain-containing-protein	unknown	unknown	gnl\|CDD\|379487
NZ_CP015107.1\|WP_081248739.1\|946574_946829_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP015107.1\|WP_063743326.1\|939231_939957_+\|polyprenol-monophosphomannose-synthase	unknown	unknown	gnl\|CDD\|133062
NZ_CP015107.1\|WP_063743342.1\|956458_956767_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015107.1\|WP_063743341.1\|955624_956455_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379165
NZ_CP015107.1\|WP_063743332.1\|943505_944390_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP015107.1\|WP_063743348.1\|958182_959061_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015107.1\|WP_063743334.1\|952225_952447_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP015107.1\|WP_063743336.1\|952471_953152_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.81661e-12
NZ_CP015107.1\|WP_063743341.1\|955624_956455_+\|AAA-family-ATPase	gnl\|CDD\|379165	pfam13401, AAA_22, AAA domain.	4.82564e-16
NZ_CP015107.1\|WP_063743339.1\|953452_955573_+\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.39496e-11
NZ_CP015107.1\|WP_063743328.1\|939971_941309_+\|dihydroorotase	gnl\|CDD\|181716	PRK09236, PRK09236, dihydroorotase; Reviewed.	0
NZ_CP015107.1\|WP_063743324.1\|936613_937366_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|223955	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism].	4.51265e-34
NZ_CP015107.1\|WP_060381531.1\|937681_938431_-\|uroporphyrinogen-III-synthase	gnl\|CDD\|119440	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.	8.82671e-37
NZ_CP015107.1\|WP_063743344.1\|956895_957744_+\|hypothetical-protein	gnl\|CDD\|309640	pfam04586, Peptidase_S78, Caudovirus prohead serine protease. Family of Caudovirus prohead serine proteases also found in a number of bacteria possibly as the result of horizontal transfer.	1.49416e-07
NZ_CP015107.1\|WP_063743330.1\|942364_943351_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187539	cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs. This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.57286e-68
NZ_CP015107.1\|WP_060381530.1\|938463_939129_-\|DUF4271-domain-containing-protein	gnl\|CDD\|379465	pfam14093, DUF4271, Domain of unknown function (DUF4271). This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 221 and 326 amino acids in length.	3.3285e-25
NZ_CP015107.1\|WP_060381524.1\|944380_944710_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.59632e-26
NZ_CP015107.1\|WP_060381527.1\|941327_941708_+\|DUF4296-domain-containing-protein	gnl\|CDD\|379487	pfam14129, DUF4296, Domain of unknown function (DUF4296). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 90 amino acids in length.	3.53495e-20
NZ_CP015107.1\|WP_081248739.1\|946574_946829_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	0.00107584
NZ_CP015107.1\|WP_063743326.1\|939231_939957_+\|polyprenol-monophosphomannose-synthase	gnl\|CDD\|133062	cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. This protein family belongs to Glycosyltransferase 2 superfamily.	7.58698e-96
NZ_CP015107.1\|WP_063743332.1\|943505_944390_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	1.0887e-98

>NZ_CP015107.1|WP_060381524.1|944380_944710_+|CRISPR-associated-endonuclease-Cas2
MDLNGYRIMWLFVFFDLPTDTKKDRKNASGFRNQLLKDGFSMMQYSVYIRHCASSESADVHEKRVQKLLPPSGKVSILRITDKQFGNIQNFWGKVEIPSGPQPTQLELF
>NZ_CP015107.1|WP_063743332.1|943505_944390_+|type-II-CRISPR-associated-endonuclease-Cas1
MLKKTVLIENKCSIVTKNNQLHIKTEERENAIPVEDIGFIILDNPEIYISIPAMNLLIEHNSAVIICNKNHLPNGMFLNLESHHIQQEIFRFQIDASIPLKKQLWQQTIIEKITNQGLLLEKIKGNKNVFPFLASKVLSGDSSNMEGVAAGQYWKDFFEMDFKRERYGNYPNPFLNYGYAILRAATARALSGSGLLNTLGIHHKSKYNAFALADDIMEPFRPIVDEKVYELVQTYEEQELNTAIKAELLQILTRTVYFKDEKSPLMVGLQKTASSLQQCFAGERKKIKYPKLWI
>NZ_CP015107.1|WP_063743330.1|942364_943351_-|NAD-dependent-epimerase/dehydratase-family-protein
MILVTGATGLVGSHLILKLINSGEKVKALFRTEKNKEKVKKVFEHYKKEDQFDKINWVLGDILDVPSLEFAFQDIVQVYHCAALVSFEPKEEEKLRRVNIEGTANVVNLSVDFGVQKLCYVSSIAALGDLKEYEHKITEETEWNPELPHSDYAISKYGAEMEVWRAYQEGLPVVIVNPGVVLGPLFWREGSGDIYNKVASQIPFYTKGGTGFVSVDDLVCIMKKLMKSPIVGQRFIVVSQTISYQEVTNLIAKKLNVKKPTILIRSYALRLAYTFDWLLGLFGKTRVLSKDMIRTLQTMDNYDHSKIKETLKFEFKTIQDYLNQDCVL
>NZ_CP015107.1|WP_158512426.1|941708_941858_-|hypothetical-protein
MKKTYQELYFLIQYILSLNGIIRDIFEIIKLFVEIFIIKRPDKLQSFYL
>NZ_CP015107.1|WP_060381527.1|941327_941708_+|DUF4296-domain-containing-protein
MNKIACFFLILFSLSCQKFNTPEKPDNLIDEATMEKILYDLALIQAIKGHDAKLLPTNQIDPKKYVYKKYHIDSLQLVNSNKYYSYDIANYKKIYDRVIEKIKTEKIKTEKLRQAELKKEKLKKAE
>NZ_CP015107.1|WP_063743328.1|939971_941309_+|dihydroorotase
MKTILIKNAQIVNEGHIFKGDVLIENKFIIDIAEHITPLKDFEIIDAQNNYLIPGAIDDQVHFREPGLTHKGTIASESRAAIAGGITSFMEQPNTVPNAVTQELLEQKYEIASKTSYANYSFMMGATNDNLEEVLKTNPRNVAAIKIFLGSSTGNMLVDREEVLEKIFSHTNMIICVHCEDETTIQNNLADYKEKYGDNIPIDCHHLIRSEEACYISSSKAIELAKKTGARLHIFHLSTAKEMSLLDNSIPLENKKITAEVCVHHLWFTDKDYADKGTLIKWNPAVKTETDKNALWEALLDNRIDVIATDHAPHTQEEKQKPYTSAPSGGPLVQHAVVALFEAFHQGKISIERIVEKMAHNPAKLFQIDRRGFIKKGYYADLAIINTNSPWTVSKDNILYQCGWSPFENYTFKSKITHTFVNGKLVYENNQVKDLQEGMRLEFNR
>NZ_CP015107.1|WP_063743326.1|939231_939957_+|polyprenol-monophosphomannose-synthase
MQDSIVIIPTYNEIENIDAIIRAVFALPKKFDVLIVDDNSPDGTADRVIELQKEYPEALHLEKRQGKAGLGTAYVHGFKWAIQHHYDYIFEMDADFSHNPNDLTKLYEACKTQNAGMSIGSRYITGVNVVNWPLNRVLLSYFASVYVRLITGMQIQDATAGFICYQRQVLEKINLNQLKFTGYAFQIEMKYRTFANHFKIIEVPIIFTDRTKGESKMSGAIIREAIFGVIMLRVRKMFNLL
>NZ_CP015107.1|WP_060381530.1|938463_939129_-|DUF4271-domain-containing-protein
MNNYELIPRIVENKNWITIVFIVAIGVVTITKAVFEKRFTDFVRLLFNNKYIKVYKDPSNLMTWFTILLFFVQLISFSFFIQLVLSYYGYTTKTNWVSFIQIITFLTFFVLSKYLIEKIIATSFDTESFIEQFNLFKVSYRTYLGILLLPVDMVLYYTNSINQYVILGVLVIILIINAVTYLVSLRNYQNLLLRKLFYFILYICALEIAPYFFMYYYITNR
>NZ_CP015107.1|WP_060381531.1|937681_938431_-|uroporphyrinogen-III-synthase
MKVKTILVSQPEPKVENSPYFDLQNKHKIKVDFRPFIHVEGVPAKEVRAQKIDLNNYTAIILTSKNSVDHFFRVAEEMRYKIPEDLRYFCQSEAVAYYLQKYVVYRKRKIYVGQKEFADMSSFFKKYKDEKFLLPASDKLNADVPQTLNNLKLDWTPGTFYRTVMSDLSDLKDVYYDVLAFFSPTGIQSLFKNFPDFKQNETRIAVFGSTTQKEAIDHGLRIDIMAPAPGVPSMTMALEKYVAEVNKGK
>NZ_CP015107.1|WP_063743324.1|936613_937366_-|enoyl-CoA-hydratase/isomerase-family-protein
MKGFINTIIKDKIARITFSHPASNSFPSEQLKLLTEEIFAISKNKEVGVVVLQSEGRGAFCAGASFDELLEVNDLETGKAFFSGFANVINAMRKCEKIIIGRVQGKTVGGGVGLVSACDYTFATHAAAIKLSEIAIGIGPFVIEPAVSRKIGKSAMAEMTLSPTEWKSAEWGFQHKLYSKLFEDVETMDQTLNEFTQQLASYNPEALLEFKKVLWEGTSHWDELLYDRAAVSGKLVLSDFTKNALNAFKK
>NZ_CP015107.1|WP_081248739.1|946574_946829_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MYNYDLSEQAKIDLLRIYEYRIGQFGLDQADKYFDMMHDCFNKIAKIHIYSLWHQILSQIITNVFAELTSSIIKLLQMELSLQQ
>NZ_CP015107.1|WP_063743334.1|952225_952447_-|hypothetical-protein
MTVQEKRRLGQEKHKLLRYQAVLEEFKQFDNGDIPMTTIHRKYIYPKFFISMTTLYTILSTPVAKRLKELEQI
>NZ_CP015107.1|WP_063743336.1|952471_953152_-|helix-turn-helix-transcriptional-regulator
MISYKEKIIKYRKLKNLTQTQFAEKMSVSRSYIAQIEGGKIEPSKGFMDKMIEVFDLNKKFFFIDDEQNLNVELIENNVHLISNDNVHLIDYNNIDSVTMLQILNSNYTRLSNLYQRLIDVKLMTNKQSELNVEEGLLDYIKNFADVKNVYFNDLICNTDSGFGKSKTMEFTDFELLNKKELQEYYNKLINNVNLFEFVFFEFFRKFYREYMSEWYTRNNKKNFSE
>NZ_CP015107.1|WP_063743338.1|953245_953443_+|hypothetical-protein
MKTFEEAKRMVENLPRGTKKRIAEITGLSPNTVYRFFNGLKTEYNTVSKIIESLKEIEIVCKKTK
>NZ_CP015107.1|WP_063743339.1|953452_955573_+|DDE-type-integrase/transposase/recombinase
MYINQSILEKQFCISKNLITTSCKRYRQGKSKSWENIKDPTDNRKVLINLDSIPEATRKKYNIPTGIEYYEAEQLRRSEEEAKKKELLTSLKNDKNKSLLYDAYKNNYVQYIPIYQEFFKNNKKTTPETIRKMACNHAFWIAIVKITEKSNKTASISIRTAFQLYSELANELDFSRYFTKEPSFRTVLTEFKTRIANKECLASLVTTKHYLTVNRMKTNDYHKGLAIAVLGHPNKYTYGQATDIINYHCIEENQNTINESWVKRMMAYDNHFRTLVIASRNGEKFAKENFIQHAVRENTPFPANIWMIDGSPLQFYCHNESKTKLVRLNLFIIIDVCSRKVVGFDISYSENKYNVLNALKMAVMEEGHLPAEIVSDNFTASKTEEIEALKEQMEKLGTVWRHAKVGNAQDKSYVERWFGSFQSVECSLYDDYIGEGIMSKRDNRRTAEQLLANSKKSGIPTFNQMKDRVITMIITYNQREKKQKSPKEVYKTLPKPNARELDAVKTSLLFWNRTKATVRKSMIKIVVNKTIHFFELKDHKLSTELQGKQVFVRYDENDLDSIMLFDLIHERVICECKKAIRIVTGQIDRTDEDLENIYKLTAKQKSKKEYLSTEKEKVIQSALKQVNKDRIDLIHPRSLAKNRLTELDDLEQQERLRNMFKIIKEEEQEEQSEPLLTIQTKEKNYIDIIEQKKPLKGVKPTFANID
>NZ_CP015107.1|WP_063743341.1|955624_956455_+|AAA-family-ATPase
MKKNELNQEVSDLIKSHLEQKQISQNKLAETIGVSNGTISNILNGVLERINESMLLKIKSFFKSSEWNIIETHNFLFVKEACAEAKESHRLIGIIGYTGAGKTTALRDFFKKKPNTYLVTCGRAMRTKQLLSEILKALGVNYLASDYEMVQMIIEEINKKENPLLIIDEASKLSPNALMYLQDIWDGIEDGAGLIIAGTEYLINNIKKGAEKNKCGMAEFYGRVSKWVFLQLPIKAEVEAVCRTNGLDDSQTIKSMLRAGSFRIIKNTVRNYLNTI
>NZ_CP015107.1|WP_063743342.1|956458_956767_+|hypothetical-protein
MGKNKTIDIKDYTSKFLEDDKSEKHLKLDLKGVCNHYGIACLIEDLFKSIDVISDVFIENEDLELISSIRSLALIGSSINIKDELQLIDIIQRNKMEITFPS
>NZ_CP015107.1|WP_063743344.1|956895_957744_+|hypothetical-protein
MDKYTFLVSDESINCYGGKVLTSGISTTQFEKNPIMLYMHERPNVIGRWENLKIENDKLYADAVFDIADPKANEIAGKVERGFLKSASVGLSIIEKEGDTITKSELLEISIVDVGGNSNALRLYNGTQSEIMLKLNEIQAIETLSHFLGFKEDKKHSDIVELVKSKINENTALKNELHSIQLANKEESEWLVDELIKMNKIHPFMKDKYLQAMEEDFYKTRLELVELFPFKRLSLYDQISKSKILLGKNDWTLEDYRKKAPEELQQNPELFKSLIDKHYGIE
>NZ_CP015107.1|WP_063743346.1|957730_958165_+|hypothetical-protein
MGLNKDSLRQKAENFFIENIESTQKDIAELFNVTVQSVNSWYKKYDWKEKRLDFHASPTRIKQRLQEEILNITSGGTPKFSSDSVAKLMSALDRCNTIADPIVVQKILKDLDLFVAQIDPKRASENTKFHKMFLQHRIAQESNN
>NZ_CP015107.1|WP_063743348.1|958182_959061_+|hypothetical-protein
MSTLNKQIWTDQIMKGFYPTASFLNYVKDFSALSENDVINMADAGFDPNVLVNNTTYPIKITQRTDTPLSFELDLFETENTLVRNPEIVELSYDKMESVLYGHRMALQNKTALKAAHAYSPDEDNQFTPIVRTTGSDNGEGFKRLLVEDILKLKRKFDLMDIPVDKRYLVLDPRHTEDLILYDLKSFKDITDFVNGTPKRFAGFNILEFTKNPTYDNITGKKKAFGTVAGANDVFSSFAFCSDEVMKADGSMNMFERLNDPELRGTVVGFDKRFIALPIRKKGIGAIVSTKF

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Crispr_ID: NZ_CP015107_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015107_2

1382561-1382671

Orphan

Consensus_repeat	Method
TTCGCTTCGCTCGAATTACAAAGTTTTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015107_2

>merge|NZ_CP015107|2|1382561-1382671|CRISPRCasFinder
TTCGCTTCGCTCGAATTACAAAGTTTTTACACAGAGTTTCACAAAGTTCTTACACAGAGTCACACAAAGTTTTCTTTTTCAGTTCGCTTCGCTCGTATTACAAAGTTTTTA

>NZ_CP015107|2|2|1382561-1382671|CRISPRCasFinder
TTCGCTTCGCTCGAATTACAAAGTTTTTA	CACAGAGTTTCACAAAGTTCTTACACAGAGTCACACAAAGTTTTCTTTTTCAG
TTCGCTTCGCTCGTATTACAAAGTTTTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015107.1\|WP_063743490.1\|1377307_1378018_-\|HesA/MoeB/ThiF-family-protein	unknown	unknown	gnl\|CDD\|238386
NZ_CP015107.1\|WP_060383702.1\|1388432_1389308_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|225088
NZ_CP015107.1\|WP_060383716.1\|1376125_1377247_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320691
NZ_CP015107.1\|WP_063744162.1\|1381205_1381958_-\|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|238574
NZ_CP015107.1\|WP_060383709.1\|1382744_1384559_-\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|236451
NZ_CP015107.1\|WP_081078461.1\|1374035_1374719_-\|TIGR00266-family-protein	unknown	unknown	gnl\|CDD\|376704
NZ_CP015107.1\|WP_060383705.1\|1386555_1387254_-\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|211339
NZ_CP015107.1\|WP_060383708.1\|1384615_1384822_-\|sulfur-carrier-protein-ThiS	unknown	unknown	gnl\|CDD\|340451
NZ_CP015107.1\|WP_060383718.1\|1374726_1375449_-\|TIGR00266-family-protein	unknown	unknown	gnl\|CDD\|376704
NZ_CP015107.1\|WP_060383707.1\|1385016_1385577_-\|DNA-3-methyladenine-glycosylase-I	unknown	unknown	gnl\|CDD\|377025
NZ_CP015107.1\|WP_060383712.1\|1380583_1381216_-\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|234590
NZ_CP015107.1\|WP_060383710.1\|1381924_1382497_-\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|238317
NZ_CP015107.1\|WP_060383714.1\|1378573_1379689_-\|2-iminoacetate-synthase-ThiH	unknown	unknown	gnl\|CDD\|236425
NZ_CP015107.1\|WP_060383703.1\|1388129_1388360_-\|DUF3098-domain-containing-protein	unknown	unknown	gnl\|CDD\|378629
NZ_CP015107.1\|WP_060383704.1\|1387258_1388068_-\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|376891
NZ_CP015107.1\|WP_060383706.1\|1385725_1386355_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|379658
NZ_CP015107.1\|WP_060383701.1\|1389431_1390433_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239488
NZ_CP015107.1\|WP_060383717.1\|1375458_1376121_-\|TIGR00266-family-protein	unknown	unknown	gnl\|CDD\|376704
NZ_CP015107.1\|WP_060383700.1\|1390440_1391196_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239488
NZ_CP015107.1\|WP_060383713.1\|1379832_1380591_-\|thiazole-synthase	unknown	unknown	gnl\|CDD\|234687

Protein	Function_ID	Function_description	E-value
NZ_CP015107.1\|WP_063743490.1\|1377307_1378018_-\|HesA/MoeB/ThiF-family-protein	gnl\|CDD\|238386	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). .	1.81469e-113
NZ_CP015107.1\|WP_060383702.1\|1388432_1389308_-\|FtsX-like-permease-family-protein	gnl\|CDD\|225088	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning].	1.72808e-35
NZ_CP015107.1\|WP_060383716.1\|1376125_1377247_-\|M48-family-metallopeptidase	gnl\|CDD\|320691	cd07332, M48C_Oma1_like, Peptidase M48C Ste24p, integral membrane endopeptidase. This subfamily contains peptidase M48C Oma1 (also called mitochondrial metalloendopeptidase OMA1) protease homologs that are mostly uncharacterized. Oma1 is part of the quality control system in the inner membrane of mitochondria, with its catalytic site facing the matrix space. It cleaves and thereby promotes the turnover of mistranslated or misfolded membrane proteins. Oma1 can cleave the misfolded multi-pass membrane protein Oxa1, thus exerting a function similar to the ATP-dependent m-AAA protease for quality control of inner membrane proteins; it cleaves a misfolded polytopic membrane protein at multiple sites. It has been proposed that in the absence of m-AAA protease, proteolysis of Oxa1 is mediated by Oma1 in an ATP-independent manner. Oma1 is part of highly conserved mitochondrial metallopeptidases, with homologs present in higher eukaryotes, eubacteria and archaebacteria, all containing the zinc binding motif (HEXXH). It forms a high molecular mass complex in the inner membrane, possibly a homo-hexamer.	1.49587e-69
NZ_CP015107.1\|WP_063744162.1\|1381205_1381958_-\|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase	gnl\|CDD\|238574	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.	5.86022e-53
NZ_CP015107.1\|WP_060383709.1\|1382744_1384559_-\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|236451	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional.	0
NZ_CP015107.1\|WP_081078461.1\|1374035_1374719_-\|TIGR00266-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	1.13845e-78
NZ_CP015107.1\|WP_060383705.1\|1386555_1387254_-\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|211339	cd02573, PseudoU_synth_EcTruB, Pseudouridine synthase, Escherichia coli TruB like. This group consists of bacterial pseudouridine synthases similar to E. coli TruB and Mycobacterium tuberculosis TruB. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruB and M. tuberculosis TruB make psi55 in the T loop of tRNAs. Psi55 is nearly universally conserved. E. coli TruB is not inhibited by RNA containing 5-fluorouridine.	1.98419e-97
NZ_CP015107.1\|WP_060383708.1\|1384615_1384822_-\|sulfur-carrier-protein-ThiS	gnl\|CDD\|340451	cd00565, Ubl_ThiS, ubiquitin-like (Ubl) domain found in sulfur carrier protein ThiS. ThiS, also termed Thiamine biosynthesis protein (ThiaminS), is a sulfur carrier protein involved in thiamin biosynthesis in prokaryotes. It has the beta-grasp ubiquitin-like (Ubl) fold with low sequence similarity to ubiquitin (Ub), and is activated in an ATP-dependent manner by sulfurtransferases, similar to the activation mechanism of Ub-activating enzyme E1. ThiS has common evolutionary origin with Ub-related protein modifiers in eukaryotes, a beta-grasp fold as Ub, and is closely related to proteins MoaD and Urm1.	4.1225e-11
NZ_CP015107.1\|WP_060383718.1\|1374726_1375449_-\|TIGR00266-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	8.92187e-69
NZ_CP015107.1\|WP_060383707.1\|1385016_1385577_-\|DNA-3-methyladenine-glycosylase-I	gnl\|CDD\|377025	pfam03352, Adenine_glyco, Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.	7.70081e-122
NZ_CP015107.1\|WP_060383712.1\|1380583_1381216_-\|thiamine-phosphate-synthase	gnl\|CDD\|234590	PRK00043, thiE, thiamine phosphate synthase.	1.29315e-58
NZ_CP015107.1\|WP_060383710.1\|1381924_1382497_-\|thiamine-phosphate-synthase	gnl\|CDD\|238317	cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.	2.12844e-19
NZ_CP015107.1\|WP_060383714.1\|1378573_1379689_-\|2-iminoacetate-synthase-ThiH	gnl\|CDD\|236425	PRK09240, thiH, 2-iminoacetate synthase ThiH.	0
NZ_CP015107.1\|WP_060383703.1\|1388129_1388360_-\|DUF3098-domain-containing-protein	gnl\|CDD\|378629	pfam11297, DUF3098, Protein of unknown function (DUF3098). This bacterial family of proteins has no known function.	3.44012e-30
NZ_CP015107.1\|WP_060383704.1\|1387258_1388068_-\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|376891	pfam02673, BacA, Bacitracin resistance protein BacA. Bacitracin resistance protein (BacA) is a putative undecaprenol kinase. BacA confers resistance to bacitracin, probably by phosphorylation of undecaprenol. More recent studies show that BacA has undecaprenyl pyrophosphate phosphatase activity. Undecaprenyl phosphate is a key lipid intermediate involved in the synthesis of various bacterial cell wall polymers. Bacitracin, a mixture of related cyclic polypeptide antibiotics, is used to treat surface tissue infections. Its primary mode of action is the inhibition of bacterial cell wall synthesis through sequestration of the essential carrier lipid undecaprenyl pyrophosphate, C55-PP, resulting in the loss of cell integrity and lysis. The characteristic phosphatase sequence-motif in this family is likely to be the PGxSRSGG, compared with the PSGH of the PAP family of phosphatases.	7.54945e-84
NZ_CP015107.1\|WP_060383706.1\|1385725_1386355_+\|thioredoxin-family-protein	gnl\|CDD\|379658	pfam14595, Thioredoxin_9, Thioredoxin.	1.29005e-43
NZ_CP015107.1\|WP_060383701.1\|1389431_1390433_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|239488	cd03394, PAP2_like_5, PAP2_like_5 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	1.78787e-09
NZ_CP015107.1\|WP_060383717.1\|1375458_1376121_-\|TIGR00266-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	3.09148e-67
NZ_CP015107.1\|WP_060383700.1\|1390440_1391196_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|239488	cd03394, PAP2_like_5, PAP2_like_5 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	7.53176e-26
NZ_CP015107.1\|WP_060383713.1\|1379832_1380591_-\|thiazole-synthase	gnl\|CDD\|234687	PRK00208, thiG, thiazole synthase; Reviewed.	1.03794e-156

>NZ_CP015107.1|WP_060383710.1|1381924_1382497_-|thiamine-phosphate-synthase
MILLSTEHIIENEIQTLHQLFEAGLTHFHIRKPNYTLQETKAYLEKIDTSFHPFCVVYYPELVNEYDLKGIHQTNQNRNSIVKNTKSLSTSTHSISEFNELYSAYHYAFLSPIFPSISKTNYQNPEILHQIAQRTNFNTQLIALGGISEKNISEVLPYFNSVALLGAIWLHPNPIEQWKKCQNIVLSYSV
>NZ_CP015107.1|WP_063744162.1|1381205_1381958_-|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase
MSKHRPFVLSLAGFDPSAGAGVLADVKTFEMQKVYGLAVITGNTIQTEDRFLKMEWMDTSWVIDSLNHLAKQYEVQAVKIGIIPSLETLDTYIKTIKLLWPKAKIVWDPVLKATANYEFTPLIYDSLPSILEQVDLITPNHNELDILVPQSISPLEKAELLAQHTAVLWKGGHNISQPGTDYLIISHETHILKPSTNKIYPKHGSGCILSSAITAHLTLDKSLPESCKKAKQFIEQTLNSNKKLLAYYVT
>NZ_CP015107.1|WP_060383712.1|1380583_1381216_-|thiamine-phosphate-synthase
MLPKIQFISQGETPEKQLNSIRKALDAGITWTQLRYKNASKIDVFRLAEKVKKETDQYNALLTINDFPTIAKAIDAHGLHLGLTDGSIEQARELLGNVKIIGGTANTLEDVQQRLAERCDYVGLGPLRFTTTKEKLSPSLGFEGYKKIINTSSNTALVKPIFAIGGIVENDLPKLLEIGVYGIAVSGLIYNATQPSQIVKQLNETLYTYA
>NZ_CP015107.1|WP_060383713.1|1379832_1380591_-|thiazole-synthase
MLNIGNTTFSSRLFVGTGKFGSSQIMEEAILASGSELVTVALKRVDFETETDAILSHLNHSHIQLLPNTSGARNAKEAVFAAQLAREAMETNLVKLEIHPDPKYLLPDPIETLKATEELAKLGFEVYPYIHADPVLCKLLEEVGTAAVMPLGSPIGSNKGLRTIDFLEIIIEQSKVPVIIDAGIGAPSDAAKAMELGADAVLVNTAIAVAGNPVAMAQAFKEAVIAGRRAFEAQLANPLAHAEASSPLTSFL
>NZ_CP015107.1|WP_060383714.1|1378573_1379689_-|2-iminoacetate-synthase-ThiH
MMTFKTVFENYSWETVANRIASVTHRDIENVLRKPKRTVEDFLTLLSPLAQEYLESMAQLAHQLTQKRFGKTIQLYAPMYLSNECQNICTYCGFSLDNKIKRKTLSDSEIRQEVETLKAMGYDHVLLVTGEANYTVHIGYFLNAIEVIKNDFANISVEVQPLSQEEYEQLHQAGVYSVLVYQETYHKEVYKQYHPKGKKSNFDFRLETPDRVGKAGIHKIGLGVLLGLEDWRVDSFFNALHIDYLQKTYWKSKYSVSFPRLRPAEGIIEPNFIMEDKDLLQLICAYRIWNEDLEISISTRENEHFRNHIIPIGVTTMSAGSKTNPGGYVVDPQTLEQFEISDERPVAEIAQLINSKGYQPVWKDWDRAFRI
>NZ_CP015107.1|WP_063743490.1|1377307_1378018_-|HesA/MoeB/ThiF-family-protein
MLTISDYLRYSKHLLVPEIGEEGQLKIKNAKVLVIGAGGLGSPILQYLTSAGVGTLGVVDFDRVALHNLHRQILYTEADIDLPKVTQAKIALEKLNPLVEIQVFNEKLTPENAPSLFEYFDIIVDGCDNFNTRYLVNDVCVQLGKPLVYGSIFKFEGQIAVFNHNGSKQLRDLFPDSPNPEDVPDCSLNGVISSLPGIIGTMMAQETLKMIIGLPVLRNELIVFSTLKWEFQKFEF
>NZ_CP015107.1|WP_060383716.1|1376125_1377247_-|M48-family-metallopeptidase
MNTYEAILIHPGVTGGRVSGNLHVKTNGILFESGAINHHISFTNLSINAGGAANRFIFFSDSTINSISIYTADKSILKDNILVSNNKFKQEIKKSKSTLNGLLRGIIIALIIIGLFIGSLYFLKDKMVESMASQVPISWEKKAGDKLFNTLSLQYHFIKNDSLKNEFIEVAKPLFNQIEKEGYKVDLYFVKDPTINAFALPGGKVIIQTGLIENAKSWEEVMGVLSHELSHVTRRHHIRGIINNLGIFAILSATVGDVSAIAGTFINMGGELASLSNSRDFEIEADETGREYLINAKINPAGLISFFKTLEKEEKTILDSTSVKDIDLSFLSTHPDTKFRIEKLKEKQKEDKTPYPLLPNTFNAFKTKLLNLK
>NZ_CP015107.1|WP_060383717.1|1375458_1376121_-|TIGR00266-family-protein
MRIKTEGKPAFAYVMVELEPGETIIAESDAMSSMSAELDLDAKFNGGFFVGLARKFFGGESLFINHFTNNTSKTLSLHLTQATPGDIEIKELDGTQSYCIQRGSYIASEAGVKLGVKWAGLGSLIGGEGLFKLVVSGTGRVIFGAYGGILEKEIDGEYIVDTGHLVAYEPGMKLKPQLSGGIFSSFFGGEGFVTRVEGKGKIYIQTRNLSGLVSWINRQI
>NZ_CP015107.1|WP_060383718.1|1374726_1375449_-|TIGR00266-family-protein
METLHTQTEGKSTTLNVDLQMRPSSTVAVIKLKPGEEFTAEAGSMIAMSPSITMTTSTQQKKSGGFLKGLKRLLSGESFFLNHYKAGNEGGTVFLSTTLAGDMMVKELRGEGIIVQGGSYVASSPEITIDMSFQGFKNLISKEGLFWLAVKGQGTVVVNSFGAIYPIQIDGEYIVDTGHIVAFEEHLNFTLTKAGKSWMSSILGGEGLVCKFQGQGTVWVQSHNTSTFGGILGPKLKPRG
>NZ_CP015107.1|WP_081078461.1|1374035_1374719_-|TIGR00266-family-protein
METQNKGFKFSMDCKPDFGFVTINIPAGEKLKVEASAMATMDTNLEMKTTLKGGFSRFLTGESLFINEFTAKNGSGDIQLAPACPGDIEHIYLNNETIYIQNSAFLASSENIIIDSKFQGLTKGFFSGENLFLIKCSGEGDLWFNSYGGIIPIDVEDGYVIDTGHIVAFTEGLTYDISRVGGYKSLFFSGEGLVCRFQGKGRIWIQTRKITPFLSWTYPFRPKGKNK
>NZ_CP015107.1|WP_060383709.1|1382744_1384559_-|phosphomethylpyrimidine-synthase-ThiC
MENTITRTPFPNSKKVYIQGEIHDIQVAMREITLSDTKLTNGQVEQNPPVTVYDTSGAYTDPSIEIDVRKGLPRLREQWILDRNDVEILDELSSEYGKQRLADEKLDHLRFEYLHQPMRAKEGANVTQLYYAKQGIITPEMEYIAIRENQRIEQLETAQKAMCHQHAGESFGARTPKGKITAEFVRSEVAAGRAVIPNNINHPESEPMIIGRNFLVKINANIGNSAVTSSIEEEVEKAVWACRWGADTIMDLSTGKNIHETREWIIRNSPVPIGTVPIYQALEKVKGVAEDLTWEIFRDTLIEQCEQGVSYFTIHAGVLLRYIHLTANRVTGIVSRGGSIMAKWCLFHHKENFLYTHFEDICQILKQYDVAFSLGDGLRPGSIADANDAAQFAELETLGELTKIAWKHDVQVFIEGPGHVPMHLIKENMEKQLECCSEAPFYTLGPLTTDIAPGYDHITSGIGAAMIGWFGCAMLCYVTPKEHLGLPNKKDVKDGVITYKIAAHAADLAKGHPGAQYRDNALSKARFEFRWEDQFNLSLDPDTAREFHDETLPADAAKVAHFCSMCGPKFCSMKISQEIRDTAVEEGLKAKSEEFIENGKEIYV
>NZ_CP015107.1|WP_060383708.1|1384615_1384822_-|sulfur-carrier-protein-ThiS
MELIINQEKKIFKEEVLTLQELLDIELPDKQKGIAIAIDQQVIPRSQWENTSLQSNQKIIIIKATQGG
>NZ_CP015107.1|WP_060383707.1|1385016_1385577_-|DNA-3-methyladenine-glycosylase-I
MKKKRCDWCQKDNLYRNYHDNEWGNPIYDDETIFEFLVLETFQAGLSWYTILTKRENFRKAFNNFDFQKIAKYSNKKMELLAQDSGIIRNKLKIKATVTNAQAFMKVQEEFGTFSKYIWGFVGGKPIDNKPKTLKDVPATTEISDKLSKDLKKRGFKFVGSTVVYAYMQAIGMVNDHIEDCWKRNS
>NZ_CP015107.1|WP_060383706.1|1385725_1386355_+|thioredoxin-family-protein
MKTEIIQGLLNSYTYSEYRKSVADLLVQGKSSGNDQSEDHLYYSQLNQTRMNRLDKTLQIPEDILEKLKNIKNEYTWLVLAEGWCGDVAQIAPILYKISSVTDKINLRFVFRDANDPLMNCFLTNDARAIPKLIILDNKNQELKATWGPRPEGATNLIKNYKAQHGVVDQTAKKELQLWYLHDKGKSTMEELISIMTHIEELVNNKIYN
>NZ_CP015107.1|WP_060383705.1|1386555_1387254_-|tRNA-pseudouridine(55)-synthase-TruB
MYTKEDILNGQVLLIDKPLTWSSFQAVNKLKYVLKNRLDLPKKFKIGHAGTLDPLATGLLIVCTGKYTKKIPELMGQTKEYTGTIKLGATTPSYDLETPINAIFPIEHITPLLITETVKQFIGEIDQKPPVFSALKKDGKRLYEHARAGEEIEIQARKTTIYEFEITRIALPEIDFRISCSKGTYIRSLAYDLGKALESGGHLTALRRTKSGSYSIEEALTPDVFSELIPNN
>NZ_CP015107.1|WP_060383704.1|1387258_1388068_-|undecaprenyl-diphosphate-phosphatase
MDLLKAIIIAIIEGLTEYLPVSSTAHMIFTSSFFGIQNDDFVKLFQVSIQFGAILAVVFLYWKKFFDFTKFNFYIKLAAAVVPALILGKLFDDKIEAVLEKPIPIAFVLIVGGIILLFIDRFFQNSQINSEEEISIKKAITIGFWQCLAMMPGTSRSAASIIGGMQQGLSRHVAAEFSFFLAVPTMLAVTCYSVFLKTYEHSQMKGYELILQSKDTITMFIIGNIVAFIVAVLAIKLFIGIIKKYGFKPWGWYRIIAGTLLLIYFSINK
>NZ_CP015107.1|WP_060383703.1|1388129_1388360_-|DUF3098-domain-containing-protein
MENKKNEFLFEKVNYKFLLIGVAIIAFGFILMSGGGSEDPAVFNPEIFSFRRIRLAPTVVLAGFGIVIYSIFKQDK
>NZ_CP015107.1|WP_060383702.1|1388432_1389308_-|FtsX-like-permease-family-protein
MSSSFDKFQKRRLITSYFSVVLSVGLVLFMLGLLALFIVNAKKLSNDFKEGITMTVFFKDDAKDTTLTKYGEMLKEANFAKDFVFISKEQAAKEHEKTLGENFTEFLGMNPLKNSFDIHLRADYVENDSVAKIERKLRENPLVADIFYDKQLVKMVNENVKKASMWILIISGFLTVVAVLLINSSLRLSIYANRFIIKTMQMVGATKSFIRKPFILRSIKLGIIGAGVAIIALLALLFYIDAIWPTLGVFNDIFSIVFILLSVFGIGILITWLSTYFATQRFLNLRTDDLY
>NZ_CP015107.1|WP_060383701.1|1389431_1390433_+|phosphatase-PAP2-family-protein
MKKIAFYCCLLLNLSLFCQSKDTLVGIKTDKLETEEKTQSYQINPNTSRIYNKPRILDAITFLPKDFITTSKDFIAKDHAWYLGGAVASTALLVPFDQSITNSSREFSDRIGLSSNNIYGKFGPLQNIPKNLGAGFYLIGNGTTVILLTAGFTTFGLFNNDYRALSTASGLIESLALSGVYVQFLKRVTGRESPFIARENGNPGGDWNPFPSFSAYSKSTPHYDAMPSGHLTTIMSALTVITTNYPDYKWIKPVGYTLIAGMCFQMVQSEVHWISDYPLALLIGYFSGKNIAKRRFKDVNKNIGLQLNKPKYEMNIIGSNKAGFKTLGLSITF
>NZ_CP015107.1|WP_060383700.1|1390440_1391196_+|phosphatase-PAP2-family-protein
MKKQKLIYCILISYLCTFSSFAQIIDTIHGKKVDHYDTFKMKKMIIPTALIVSGVILRNPAWRNQLLDFKNQLFGTSFSTKIDDYIQYIPIVQTLGGKTIGIESKHGYKQIITNQIVSNAISAAIVHGLKNSVGDLRPDGSAKNSFPSGHAATAFTNAMLQYLEYKDSNKWYAASGFLFATATGVLRVANTRHWPGDVAAGAGIGMASAIVVHYWSPFKWDQTKKDKRMSYIAYPILNEKTYGLGFIGKLD

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Crispr_ID: NZ_CP015107_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015107_3

2196878-2196956

Orphan

Consensus_repeat	Method
AGTCTGAGCCATAATTTAAAGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015107_3

>merge|NZ_CP015107|3|2196878-2196956|CRISPRCasFinder
AGTCTGAGCCATAATTTAAAGATGTAAATGCTTCGCATATGTACTCGGCTGCCCAGAGTCTGAGCCATAATTTAAAGAT

>NZ_CP015107|3|3|2196878-2196956|CRISPRCasFinder
AGTCTGAGCCATAATTTAAAGAT	GTAAATGCTTCGCATATGTACTCGGCTGCCCAG
AGTCTGAGCCATAATTTAAAGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015107.1\|WP_060383126.1\|2200602_2201559_+\|arginase	unknown	unknown	gnl\|CDD\|212515
NZ_CP015107.1\|WP_060383120.1\|2206418_2207039_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_CP015107.1\|WP_060383136.1\|2193370_2193973_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015107.1\|WP_060383123.1\|2203589_2203946_+\|CoA-binding-protein	unknown	unknown	gnl\|CDD\|379152
NZ_CP015107.1\|WP_060383124.1\|2202843_2203479_-\|MarC-family-NAAT-transporter	unknown	unknown	gnl\|CDD\|236814
NZ_CP015107.1\|WP_145915593.1\|2192709_2193228_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015107.1\|WP_060383133.1\|2195356_2195584_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015107.1\|WP_060383121.1\|2205901_2206336_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015107.1\|WP_063743747.1\|2191254_2191959_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015107.1\|WP_060383122.1\|2204101_2205619_-\|sodium:solute-symporter	unknown	unknown	gnl\|CDD\|271361
NZ_CP015107.1\|WP_063743749.1\|2197294_2198578_+\|endonuclease-V	unknown	unknown	gnl\|CDD\|377374
NZ_CP015107.1\|WP_060383132.1\|2195928_2196618_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015107.1\|WP_060383135.1\|2194156_2194723_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015107.1\|WP_060383128.1\|2198654_2198867_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015107.1\|WP_158512431.1\|2194802_2195225_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015107.1\|WP_060383125.1\|2201646_2202582_+\|amidinotransferase	unknown	unknown	gnl\|CDD\|227211
NZ_CP015107.1\|WP_060383140.1\|2189304_2189859_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379603
NZ_CP015107.1\|WP_060383139.1\|2189860_2190568_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015107.1\|WP_063743746.1\|2188331_2188568_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015107.1\|WP_060383127.1\|2199203_2200487_+\|citrate-synthase	unknown	unknown	gnl\|CDD\|99867

Protein	Function_ID	Function_description	E-value
NZ_CP015107.1\|WP_060383125.1\|2201646_2202582_+\|amidinotransferase	gnl\|CDD\|227211	COG4874, COG4874, Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown].	1.38472e-123
NZ_CP015107.1\|WP_060383123.1\|2203589_2203946_+\|CoA-binding-protein	gnl\|CDD\|379152	pfam13380, CoA_binding_2, CoA binding domain. This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.	2.07377e-26
NZ_CP015107.1\|WP_060383127.1\|2199203_2200487_+\|citrate-synthase	gnl\|CDD\|99867	cd06114, EcCS_like, Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some type II CSs including EcCS are strongly and specifically inhibited by NADH through an allosteric mechanism. Included in this group is an NADH-insensitive type II Acetobacter acetii CS which has retained many of the residues used by EcCS for NADH binding.	0
NZ_CP015107.1\|WP_060383124.1\|2202843_2203479_-\|MarC-family-NAAT-transporter	gnl\|CDD\|236814	PRK10995, PRK10995, MarC family NAAT transporter.	5.56746e-46
NZ_CP015107.1\|WP_060383126.1\|2200602_2201559_+\|arginase	gnl\|CDD\|212515	cd09989, Arginase, Arginase family. This family includes arginase, also known as arginase-like amidino hydrolase family, and related proteins. Arginase is a binuclear Mn-dependent metalloenzyme and catalyzes hydrolysis of L-arginine to L-ornithine and urea (Arg, EC 3.5.3.1), the reaction being the fifth and final step in the urea cycle, providing the path for the disposal of nitrogenous compounds. Arginase controls cellular levels of arginine and ornithine which are involved in protein biosynthesis, and in production of creatine, polyamines, proline and nitric acid. In vertebrates, at least two isozymes have been identified: type I (ARG1) cytoplasmic or hepatic liver-type arginase and type II (ARG2) mitochondrial or non-hepatic arginase. Point mutations in human arginase ARG1 gene lead to hyperargininemia with consequent mental disorders, retarded development and early death. Hyperargininemia is associated with a several-fold increase in the activity of the mitochondrial arginase (ARG2), causing persistent ureagenesis in patients. ARG2 overexpression plays a critical role in the pathophysiology of cholesterol mediated endothelial dysfunction. Thus, arginase is a therapeutic target to treat asthma, erectile dysfunction, atherosclerosis and cancer.	9.73991e-103
NZ_CP015107.1\|WP_060383122.1\|2204101_2205619_-\|sodium:solute-symporter	gnl\|CDD\|271361	cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and Na(+)/multivitamin (SMVT) cotransporters, and related proteins; solute binding domain. NIS (product of the SLC5A5 gene) transports I-, and other anions including ClO4-, SCN-, and Br-. SMVT (product of the SLC5A6 gene) transports biotin, pantothenic acid and lipoate. This subfamily also includes SMCT1 and 2. SMCT1(the product of the SLC5A8 gene) is a high-affinity transporter of various monocarboxylates including lactate and pyruvate, short-chain fatty acids, ketone bodies, nicotinate and its structural analogs, pyroglutamate, benzoate and its derivatives, and iodide. SMCT2 (product of the SLC5A12 gene) is a low-affinity transporter for short-chain fatty acids, lactate, pyruvate, and nicotinate. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	0
NZ_CP015107.1\|WP_060383120.1\|2206418_2207039_+\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	1.35896e-102
NZ_CP015107.1\|WP_060383140.1\|2189304_2189859_+\|hypothetical-protein	gnl\|CDD\|379603	pfam14412, AHH, A nuclease family of the HNH/ENDO VII superfamily with conserved AHH. AHH is a predicted nuclease of the HNH/ENDO VII superfamily of the treble clef fold. The name is derived from the conserved motif, AHH. It is found in bacterial polymorphic toxin systems and functions as a toxin module. Like WHH and LHH, the AHH nuclease contains 4 conserved histidines of which, the first one is predicted to bind a metal-ion and the other three ones are involved in activation of a water molecule for hydrolysis.	8.71322e-06
NZ_CP015107.1\|WP_063743749.1\|2197294_2198578_+\|endonuclease-V	gnl\|CDD\|377374	pfam04493, Endonuclease_5, Endonuclease V. Endonuclease V is specific for single-stranded DNA or for duplex DNA that contains uracil or that is damaged by a variety of agents.	3.44769e-67

>NZ_CP015107.1|WP_060383132.1|2195928_2196618_+|hypothetical-protein
MLSRSERSGFLNKHPQFARGFVGHKQDPLYKAEDYELLTPESIEEIPLDNNLITTINEWLKYSKEDANRRNYFKMGKDFENYIISKLSSPESLEYKALEQKIPDLSERSIYTQVYFCINGDQTGNCTNEGDYFIADFVFVKEIQVGNTSILDARIEDTKLSVNTDFTKNQKAAMNLSKYYIRSIPTESRSNPIKGNPLPNFQKGASVSKSGSFIKIYSGGSATSFGGVK
>NZ_CP015107.1|WP_060383133.1|2195356_2195584_+|hypothetical-protein
MLRSWGSSDQVALSLHALDNGNFLWDNIEVSPEELAEILAKKLDPNKKEIVLLSCNDLTSAEALVPIARIYTIQI
>NZ_CP015107.1|WP_158512431.1|2194802_2195225_+|hypothetical-protein
MDLPNADMLKNIPVKPIKNELFVFARGYNEDLKIGSLFNVIFPSKNPNEYIENLIELKYVSVNPKYEIDYLPKGYSGICLLKFQNEIPNEILKKLAGYDEKKDNQKHDTLILTQKAGLKKLLKEIETLAPARILSRGKKM
>NZ_CP015107.1|WP_060383135.1|2194156_2194723_+|hypothetical-protein
MGVTGAGKITTSAELKAFLNTIDETTTIAQLEQKGIKSFFRGTTRSKADNALFPGNPNSQAFGISTSTDPIKATIFSIESATSNGAYKGVLQIGLPNDLRNIALSAPNYRVAKELEVVLNTPANNFANLSKVEISVENARKLVKEVYEVDLPSNLSRNYADELLETIPESSLDKAFEFYQKALQYNIK
>NZ_CP015107.1|WP_060383136.1|2193370_2193973_+|hypothetical-protein
MDKLRYNIISQKFITECSQVPLIETLHSGCGKYNISLDVINTDYITSFFRSYDVSQLYSIYIVEKDNFCSTDYNVISLFNKFNKNIFVVKVEPRFFMNIEYNNLNDLSLPIFFMSNDIENLNIEDVLGSCLYEKKIILGSFEKKIVKADVLKLLEGVGVVNIVRFYTRITEEFIENILKLQSNVLDSNDDYVIKLEIGLV
>NZ_CP015107.1|WP_145915593.1|2192709_2193228_+|hypothetical-protein
MQNCKVEKLDFIETNRIIKNFNLKKYFIFIDKQELIENSCLSKLYTQQELDSLIQDAIYDELIILKSDIANFSSIEEFLICSIVKSNYIDFQKMLIVESKILSFKQELLEQDFQEILEWGFFDLFNYELEQKLELKYTQFKGAFTFFEHPLKPLFASILDNNYYLFINNSYT
>NZ_CP015107.1|WP_063743747.1|2191254_2191959_+|hypothetical-protein
MEEVLVIINKFFKEKVWDKILIEINFTEAGGYEPKLTVIKCGEKYLWGEFELFDIADIIHKKQKEILDTSEKFNKAKIEIYPDGKFLEHYWWDSGLQKQNLLSYAQVFYQWANDRMMSMIFEYEKDNNLLPTQYDNDGDLEYLSSWDGGVFTFYINKNNELEYKIVLIKDEVERVLEMPLKDYFIEGVLEHHKITNTELLDVWKPWNTLIIRSPHTGIPYDKVDEYVEYKTVVS
>NZ_CP015107.1|WP_060383139.1|2189860_2190568_+|hypothetical-protein
MKYYKIAIRSFYGDRIVSSANFINNLNENYFKKIGDGEIIIDAPIFDYFFLESFDKKKYWDWKLFDVHPFIGESSSMLGSLLISKKAKTIFDKFNISNPHYFYSSNLIFENDKYDYFIFQFTGKLLFKELAKYISFSKSEFLNPALKTLVSFKNIDDYIEKSEELYFEKDIDFVKKKIVLNEKLDYFPMQSFFIDNIVSENLKEAIEENNITGFEFSELDYEIIIDPSPDSPSIK
>NZ_CP015107.1|WP_060383140.1|2189304_2189859_+|hypothetical-protein
MGKPKEFILNTPEDLYKKIEYYRHTVRDVLETEEAVIYARKYFDKYVKNQSFEEWWVYAKKYNVADDLNFEVHHVIPIKVLEKNQKLKDLLFWAENNGKSFEFNGLDNAMPLQKKKAAIDLNGHTNHPKYDQAMTVKLNEILGNDSYSEIRKFNEIKKLINNTKMKLENDVLLGSKDVNEIINL
>NZ_CP015107.1|WP_063743746.1|2188331_2188568_+|hypothetical-protein
MYNTINNYDEFEKIVNYGGEQFNRNAILELINSYLKKNENLVSPWDKYNIGLDENDYLRYIEGEIQDKLYYIADKINR
>NZ_CP015107.1|WP_063743749.1|2197294_2198578_+|endonuclease-V
MIKYFELQNWEKLKVNGSIKHNGKSFTGIKENINLENNSCSKETYVNGIDHGCSLQCGFKDCELYLAIYIYIYGVKRFIFRFRMSKEIYSTEYELCYDFVLLNNFAINNRDRKQREVGSTEMLISRNDLDYEKLIANNQDIIDKYHSYDEKGYIEIDLDTFVYVHGDVERYSKVIVAYAIHNQMKEYLGKTIPDTFMEKFVWQEEQIGKTINEDQLPTDVQFIGGVTVAYHDITQVIVAVITVMNGNSQEIVDQAIYTEDKITMHIPDVFGFNETIWAIKAFEKLTIKPQLIFCDGHGIEHPKNMGLATFLGIQLDMPTIGCAKKRLVGYYKKEDLGDKRADHIELIFDQKVVGKALRTKENTNPIYVSIGHKISLETSVNWVLETTQSTRLPFVLEKAIEIARQQMPEQFRIDFMNDEPNEYGIIK
>NZ_CP015107.1|WP_060383128.1|2198654_2198867_+|hypothetical-protein
MTIIYVGKTVDDGNNPSVYRFETELFYCGDEYVPDSSKWGYPKGVSKVAYSFSEMINIIVADKIKQQNTL
>NZ_CP015107.1|WP_060383127.1|2199203_2200487_+|citrate-synthase
MSKTAILEFDGNKYEFPVMVGSENETAIDIEKLRTLTGAITIDPGYKNSGSCTSEITFLDGEEGILRYRGYAIEDLAENATFLEVSYLIIFGELPTKTQLEKFENDIRKYTLVNEEMKNIIDGFPKTAHPMGVLSSLTSALTAFNPKVVNVENETEMYEAICKTMGKFLVIATWTYRKMMGFPLNYYDNTKGYVENFMRLMFELPTAPYTTNKTVIDALDKLFTLHADHEQNCSTSTVRIVGSSHAGLFASISAGVSALWGPLHGGANQAVLEMLEQIQKDGGDAQKALERAKDKEDPFRLMGFGHRVYKNFDPRAKIIKKAADEVLAELGVNDPILNIAKQLEEAALVDPYFVDRKLYPNVDFYSGIIYRALGIPTDMFTVLFAIGRLPGWIAQWKEMRLNKEPIGRPRQVYTGYPLRPFVSMDKR
>NZ_CP015107.1|WP_060383126.1|2200602_2201559_+|arginase
MGKSITFLINKSEITAGTRGASLGPEAIITTARKKENYIFGENDLQEIKDVNTYLDKSTKFPFAKRIDGLLSIYEELNIKVSSLLQKKQFPIILAADHGSAGGTIAGIKSAYPDKRIGVIWIDAHADIHTPYTTPSGNMHGMPLASVMDIDNLECQINKVDEKTIDYWNRLKNVGGITKKINPEDLVYIAVRDTESQEEAVIEKLGLKWYTVQDVRNLGIWTLVNNINTQLHQCDIIYISFDVDSMDPLLTSHGTGTPVPNGITPQEAKDLLVHLTSNPKTACVEVVEVNPCLDEKINTMAEIALDIVDSIVNVVKNR
>NZ_CP015107.1|WP_060383125.1|2201646_2202582_+|amidinotransferase
MQQITNSILMVRPASFRMNEQTAVNNYYQKQKDTILPATITTKAQQEFDALVYKLREAGVHVIVVEDTIDSDTPDAVFPNNWISFHENGDIVLYPMFAENRRLERREDILDILEEKGFVIQEIMDYTLAEEDGVFLEGTGSMVLDRVHQKAYCALSPRADEELFIEFCEDFEFTPVLFNAFQTVDEERELIYHTNVMMAIGETFAVLCSECIDDKTEKKNLVENLKNDGKEIIYISESQVNAFAGNMLQVKGNDDKTYLVMSESAYNSLNKGQIEQIEKHTAILYSNLEIIETYGGGSARCMMAEIFLPKQ
>NZ_CP015107.1|WP_060383124.1|2202843_2203479_-|MarC-family-NAAT-transporter
MDLFFYIFAALFSVLNPIGAIPVFVGLTNGYTRQELTKTSKWTAINVFIIMIVSYFLGEYVLHFFGISLEALRIAGGMIIANSGFGLLSGKVKKRKGINKKVEDEAQQKHAIALTPLAMPLLAGPGSISLLIAFYQEHNNWIAISLAISAILAVAVSIFLVLNSAHYLVRFLGEAGIVAISRIVGFFVIAIGVQYIVNAILKIIENSHLIK
>NZ_CP015107.1|WP_060383123.1|2203589_2203946_+|CoA-binding-protein
MKTLVLGASSNPERYSFIAMSRLLQYEHEVIALGVKNERVFGIEIQKGFPLLEDIHTVTLYLNPQRQKDYYDYVIGLKPKRVIFNPGTENSEFYDLLKKNNIIIEVACTLVLLGTKQY
>NZ_CP015107.1|WP_060383122.1|2204101_2205619_-|sodium:solute-symporter
MSPFAILSLIIIYFGILFFISHFMSKNNSGNDAFFKANKNSKWYLVAFGMIGTALSGVTFISVPGEVGNPELQFKYFQFVIGNALGFILVATVLLPLYYRMNLTSIYGYIEQRLGKISYLTAASIFLISRTIGSAFRLYLVVIVLQRYVFDYYAIPFTVTVFLSLFLIFAYTYKGGLKTIIITDTLQTFFLVSSVFLTIFFICQSLDLSTLQAFEKVKNSSYSQIFFFQDYSKGNYFWKQLLGGVFVTIAMVGLDQDLMQKNLSCPNIKEAQKNMFTFTGIFVIINIFFLGVGALLYMYAEKNSIAIPMVDNVVRTDFLFPEIALKSLGLVPAIVFLLGLTAATFATTDSALTALTTSFCIDFLGMEKKQSENGDKNLNNDVKLKKTRHIVHLFFSGLIFLVIVFFNTVNDASVVKMIFKIASYTYGPLLGLYGFGLFMKTKTVRDKLVPFICLISPIICYFLSTHSAEWFDGYTIAEELIIFNGLITFIGLLFISKPATNSTRF
>NZ_CP015107.1|WP_060383121.1|2205901_2206336_+|hypothetical-protein
MKKFYKILIIALFLCSGIAYSNGEIHYTYLMKFFFNGATYTTVQGSSITFMKKGTDKYEVSGLSGCQFKVKDLVLELVEEVGNKKKYSFSKCKIDFLGGTINNEFAELSYLFKKGGEIYMDEVGDLEIIYEGVEGERKIKFKKK
>NZ_CP015107.1|WP_060383120.1|2206418_2207039_+|recombination-protein-RecR
MDFSSKILENAVQEIAQLPGIGKRTALRLVLHLLKQPIEQTTFLTGALLKMRNEIKFCKSCHNISDLDFCEICSNDNRNQTLVCVVEDVRDVMAIENTGQYRGIYHVLGGKISPIEGIGPSQLKINSLVEKIKSGNVKEVIFALSSTMEGDTTNFYIYRQIKDYPLVISSLARGISVGDELEYADEITLGRSILNRIPFENSLRTS

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Crispr_ID: NZ_CP015107_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015107_4

2583639-2583733

Orphan

Consensus_repeat	Method
GAAATGGTGCATTTCAGGATTGTAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015107_4

>merge|NZ_CP015107|4|2583639-2583733|CRISPRCasFinder
GAAATGGTGCATTTCAGGATTGTAGATCTTTGACAACTCTTACTATTCCTAATTCCGTTACTTCTATTGGAAATAGTGCATTTCAGGATTGTAGA

>NZ_CP015107|4|4|2583639-2583733|CRISPRCasFinder
GAAATGGTGCATTTCAGGATTGTAGA	TCTTTGACAACTCTTACTATTCCTAATTCCGTTACTTCTATTG
GAAATAGTGCATTTCAGGATTGTAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015107.1\|WP_063743873.1\|2575662_2577255_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|184994
NZ_CP015107.1\|WP_063743872.1\|2574175_2575648_+\|NarK/NasA-family-nitrate-transporter	unknown	unknown	gnl\|CDD\|225133
NZ_CP015107.1\|WP_063743878.1\|2585753_2587856_-\|ATP-dependent-DNA-helicase-RecG	unknown	unknown	gnl\|CDD\|236794
NZ_CP015107.1\|WP_145915600.1\|2593225_2594089_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015107.1\|WP_063743875.1\|2578338_2580555_+\|molybdopterin-oxidoreductase-family-protein	unknown	unknown	gnl\|CDD\|239155
NZ_CP015107.1\|WP_060383841.1\|2587884_2588625_-\|diphthine--ammonia-ligase	unknown	unknown	gnl\|CDD\|238952
NZ_CP015107.1\|WP_063743870.1\|2572185_2573097_+\|bifunctional-molybdenum-cofactor-biosynthesis-protein-MoaC/MoaB	unknown	unknown	gnl\|CDD\|235138
NZ_CP015107.1\|WP_063743877.1\|2584029_2584209_+\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|275036
NZ_CP015107.1\|WP_060382326.1\|2584928_2585303_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015107.1\|WP_063743882.1\|2594377_2596432_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|275228
NZ_CP015107.1\|WP_063743874.1\|2577273_2578326_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015107.1\|WP_060382330.1\|2580568_2581141_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|319891
NZ_CP015107.1\|WP_060382328.1\|2581672_2581933_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015107.1\|WP_063743879.1\|2590864_2591593_+\|diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|376615
NZ_CP015107.1\|WP_063743869.1\|2571743_2572184_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|238385
NZ_CP015107.1\|WP_060382323.1\|2589142_2590762_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|237894
NZ_CP015107.1\|WP_063743871.1\|2573100_2574090_+\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|215513
NZ_CP015107.1\|WP_060382325.1\|2585407_2585746_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378971
NZ_CP015107.1\|WP_060382329.1\|2581151_2581661_+\|Rieske-(2Fe-2S)-protein	unknown	unknown	gnl\|CDD\|239550
NZ_CP015107.1\|WP_063743880.1\|2591582_2592968_+\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|224875

Protein	Function_ID	Function_description	E-value
NZ_CP015107.1\|WP_063743873.1\|2575662_2577255_+\|MFS-transporter	gnl\|CDD\|184994	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional.	1.80318e-46
NZ_CP015107.1\|WP_063743872.1\|2574175_2575648_+\|NarK/NasA-family-nitrate-transporter	gnl\|CDD\|225133	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism].	1.47498e-64
NZ_CP015107.1\|WP_063743878.1\|2585753_2587856_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_CP015107.1\|WP_063743875.1\|2578338_2580555_+\|molybdopterin-oxidoreductase-family-protein	gnl\|CDD\|239155	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP015107.1\|WP_060383841.1\|2587884_2588625_-\|diphthine--ammonia-ligase	gnl\|CDD\|238952	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.	1.15257e-60
NZ_CP015107.1\|WP_063743870.1\|2572185_2573097_+\|bifunctional-molybdenum-cofactor-biosynthesis-protein-MoaC/MoaB	gnl\|CDD\|235138	PRK03604, moaC, bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional.	7.27447e-149
NZ_CP015107.1\|WP_060382325.1\|2585407_2585746_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|378971	pfam12844, HTH_19, Helix-turn-helix domain. Members of this family contains a DNA-binding helix-turn-helix domain. This family contains many example antitoxins from bacterial toxin-antitoxin systems. These antitoxins are likely to be DNA-binding domains.	1.19474e-05
NZ_CP015107.1\|WP_063743882.1\|2594377_2596432_+\|ATP-binding-protein	gnl\|CDD\|275228	TIGR04435, ABC_transporter, restriction system-associated AAA family ATPase. Members of this family are AAA family ATPases by homology. They occur regularly in a conserved gene neighborhood with the restriction (R), modification (M), and specificity (S) proteins of an apparent type I restriction enzyme system, plus one additional uncharacterized protein. It is not clear whether members of this family contribute to restriction per se, or to another process such as transfer of mobile elements.	0.00198618
NZ_CP015107.1\|WP_063743877.1\|2584029_2584209_+\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|275036	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.	8.0137e-05
NZ_CP015107.1\|WP_060382330.1\|2580568_2581141_+\|4Fe-4S-binding-protein	gnl\|CDD\|319891	cd16369, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	1.58317e-96
NZ_CP015107.1\|WP_060382323.1\|2589142_2590762_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|237894	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional.	0
NZ_CP015107.1\|WP_063743879.1\|2590864_2591593_+\|diacylglyceryl-transferase	gnl\|CDD\|376615	pfam01790, LGT, Prolipoprotein diacylglyceryl transferase.	1.16946e-11
NZ_CP015107.1\|WP_063743869.1\|2571743_2572184_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|238385	cd00756, MoaE, MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.	3.41773e-39
NZ_CP015107.1\|WP_063743871.1\|2573100_2574090_+\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|215513	PLN02951, PLN02951, Molybderin biosynthesis protein CNX2.	6.95197e-130
NZ_CP015107.1\|WP_060382329.1\|2581151_2581661_+\|Rieske-(2Fe-2S)-protein	gnl\|CDD\|239550	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.	7.37784e-23
NZ_CP015107.1\|WP_063743880.1\|2591582_2592968_+\|radical-SAM-protein	gnl\|CDD\|224875	COG1964, COG1964, Predicted Fe-S oxidoreductases [General function prediction only].	4.74882e-61

>NZ_CP015107.1|WP_060382328.1|2581672_2581933_+|hypothetical-protein
MSTFRTGQNIANTRKLNAILSTIILILILNITIQIWLLYAALNNALDNHKEILIPAFIASTILFGIGLSILYFLPSGNKKTVKPKL
>NZ_CP015107.1|WP_060382329.1|2581151_2581661_+|Rieske-(2Fe-2S)-protein
MSKEKNISKNWKKDFPIHKQEATQVSRRDFAKFLTLVSGGLMIGSGLVTAKAYLFPKKEIEGEQFVCKKTDIPMGGTKAFQVKGSNIPYILIHLEDGTFRAYEQKCTHLSCAVYYKPGSGQIICPCHEGYFDARTGEVLAGPPPRPLPQLTVIEKEEGLYVKAIISETT
>NZ_CP015107.1|WP_060382330.1|2580568_2581141_+|4Fe-4S-binding-protein
MSNYTSFNKNEEFFLDMQRCIGCKACEMACAECETNGHDSMIHVNYVERATTIQTTVQVCMHCEDPVCANVCPADAISKDEFGIVHTANTERCIGCSNCVIACPFGVPKKIESYDLMMKCTMCYDRTSIGEKPMCATVCPSGALFYGTKEEIKKIRPNSSPVNKFIFGNEVVLTKVNIMMPKESTELIIY
>NZ_CP015107.1|WP_063743875.1|2578338_2580555_+|molybdopterin-oxidoreductase-family-protein
MAKLPVPIEKIIEDFGPHLNYAPKEGYVGRDEPDDVVETHCCFCGMQCGIKLLVKNNKVVGFDPWKEFPFNEGRLCPKGVQRYLQNNHPDRLLNPMLRAEGKGFTNTTWEEAMNKTVSEIQRIQKKHGNDAFAMLSGVSLTNEKSYLVGKFARVALKTKNLDYNGRLCMVSAGAGNKKAFGLDRASNNYSDLEQAEVIIIAGANVSETFPTLTHWIWKARDNGAKLIVIDPRIIPLARTADIHLDILPGTDSALYGAMLKYLVDHDMLDHDFINNHTSGFQDTIDAVESYTLEWAEEVTGISKEKIKEAAKLWGKAKTSFLLHARGIEHHSKGVDNVLGCINLVLATGRIGKPYCGYATITGQGNGQGGREHGHKCDQLPGNRDIENPEHRKYISEVWGINEADLPSKGLSAYEIIEAIHRGEIKGLLSICFNPLVSLPNSNYVRQALEKLEFYVCIDFFLNETARHADVILAGSLQEEEDGTTTSAEGRVIRIRQAVTPPGNARKDSEILLELAKRLGVEEKFSFQNSEAIFNELRIASKGGTADYYGISYKKIEDNMGIFWPCPSNDHPGTPRLWEDKKFKTPDGKAHFNPAPYKLPSEVTNDEYPVTLTTGRVVSQYLSGTQTRRIGKLVDQYPEPLVEIHPELAQKYNIQQGELVKVSTRRGQGTFPANIVETIRKDTVFIPYHWPGEKSANLLTIGALDPISKIPEFKVSACKLEPLKKMTPSPSVTKAYASK
>NZ_CP015107.1|WP_063743874.1|2577273_2578326_+|hypothetical-protein
MRLKKINFNALLIAILSCIIMVVLVYLGSRNLQNFDAALITYLFGTLFAFFGIVYRTSVWLQRPPTWMYFKRGMYFLFTGKLFKHLLFIVKEFTNNIILQKFIYPRGQYRWLAHFMIAIGCISAFMITIPLTFGWIHFTLAPDTIDLYQAHFFGFKIFSFKLGSVIAFLTFHALNWSSWFVILGSLYYLRRRLINPGLIATQTFEGDLLPLILLIAISATGLGLTYSYQFMKGFAFDFLAVLHAVTVILFLIWIPFGKFFHIIQRPAQIGAHIYKIEGKKQQGMAVCPHTGKEFTTQLHINDLKIVTRKLGFDFSKPDGTSHLDLSPEGKRSKIAQAHLKARQQGGNLFG
>NZ_CP015107.1|WP_063743873.1|2575662_2577255_+|MFS-transporter
MSTWLNQWEPEDIKFWEQTGNKIAWKTLTITTISLILSFASWFMMSVIVVKLPGLGFSFNKDQLFWLAAIPGIAAGILRIIHTFILPIFGTRHVVAFATFIKLIPVLGIGLAVMNTNTPFWVFMVLAFTTGFGGGDFSSYMPSTNMFFPKRLKGTALGIQAGIGNFGVSLAQFVTPLVLSVGLYGTPSLFTNINTKEAKEIVKNTPLEQQTTIFAKMESKKQEILLSNVKPKVLDSLKKAVKSTDNVTIFKSLPLKARAKAIANANPKLAEKILNQLQPNNKAVTHTEIYIQSAAFWYIPLLILLSIISWFYLKSIPMKASIKEQMDIFNNKHTWFCTITYVMTFGTFAGLSAAFPLMIKFLYGDFPNAPDPLVYAFYGPLIGSATRVLFGFVADKVGGAILTTLTGLGILLGCIMLVTQGLLAPTSVEQFPTFVGVILMMFFFTGMGNAGTFRQYPIIFSDNQRQAAGVIGWTAAIAAFGPFIFSKLIGNNITSNGTANEFFIGVILFTSLATFINWYYYNKKGCERPS
>NZ_CP015107.1|WP_063743872.1|2574175_2575648_+|NarK/NasA-family-nitrate-transporter
MSHLRESHKILFLNTLAFMICFACWTLNGVLVTYLVDKNIFDWSIVQVGWLLGIPILSGSIFRLPIGILTDKYGGKIVFSTLLFVCAFPLFALTTATTFWAFALLSFLFGLVGTSFSVGIGYTSVWYPKEWQGRALGIFGMGNAGAAITTFIAPTLLNKFSEIDTENGWKMLPILYAITLIIIGFAFLIFAKNKKIETNSKTLLEQLQPLKNIRVWRFGIYYFLVFGCFVAYSQWLLPNFMNVYHTSLVTGGLFATMFSLPSGIIRAFGGYLSDKFGARKIMYWVLGSSVVISFLLIFPKMEILTDGPGVLATTNGIVKINNNIIQVNNKEHKVNLKNESHLKESILLPVKSSWQEIIVQQNQQVKKKELLAKGITQIKFSANMWMYLVLVILIGIAWGIGKAAVYKHIPEYFPNQVGLVGGMVGLIGGLGGFLGPIIFGYLLNTTGLWTSSWIFIFIISSICLIWMHNTIIRILRIKTPEFSRDIEHDH
>NZ_CP015107.1|WP_063743871.1|2573100_2574090_+|GTP-3',8-cyclase-MoaA
MLTDNFGRFHNYLRISITEHCNLRCTYCMPAEGIKLTPKNHIMTADEIVQIAQTFVDLGIKKIRLTGGEPLLRKDAKKIIEQLSKLNIELAITTNGILVDQYIETFKKASIQSVNISLDSLKQDKFSFITRRDQFEKVLKNIHLLIENDFHVKLNVVLIKGFNDNEILDFIHLTKNTKIEIRFIEFMPFDGNKWNKDKLVSYNEILEEINTYYTPTNVIKKEDKPNDTAKNYKIANFKGSFAIISTVTNPFCDHCNRIRLTADGKLKNCLFSKLETSLLDSLRAGHSIIPLLKNNILLKEKTRAGFDTNESFTDSLNFNLNRSMITIGG
>NZ_CP015107.1|WP_063743870.1|2572185_2573097_+|bifunctional-molybdenum-cofactor-biosynthesis-protein-MoaC/MoaB
MVDITQKSNSLRTAVAQAIVKVSNPNTLEAIIKKNVPKGDVFEASKIAGLFAVKNTSNAIPDCHPLPIEFTSVSHHIQDLNIEITVTVKTIYKTGVEVEAMHGASIVALTMYDMLKPIDKSVEIHSIKLIEKKGGKSDVKTIENQLKIGIIVCSDSISAGKKIDSAGKTIIKKIEKLGLESSFYKIIPDEILDIQSEVMNLFTNQFDLVIITGGTGLSPRDITPEALIPLLDKRIPGIEETIRNYGQQRTPYAMLSRSVVGFKGNMLIMALPGSTNGAAESIEAVFPSVLHLFKIIKGFNHNQ
>NZ_CP015107.1|WP_063743869.1|2571743_2572184_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MDITKNKLFIQGAIQSDFITTSITKHQAKTNIGAHQIFLGQVRADIIHDKHVIAIDYSAYEEMAIQKINEIRESTFQQFNITCMHIYHSLGRVKAGEICLFVFVSAPRRKATYEALEYIVEAIKHEVPIFGKEILEDHTYIWKKNK
>NZ_CP015107.1|WP_063743877.1|2584029_2584209_+|T9SS-type-A-sorting-domain-containing-protein
MYFSEDLENITIYNGEGKLVLKNEQNMNTMNLSDLPKGIYLLSGENKTGYKVFKKIVKE
>NZ_CP015107.1|WP_060382326.1|2584928_2585303_-|hypothetical-protein
MSDFLKQFGEDLKNNVPGFIAVAVSEIKSGISYFTLSTNPSFDPELASAFNLEVVKAKLNAINALGLKETIEDILINLKSQIHIIDVSENNEYFIYLAVDSTKANLGMTKALLNKYKKEIKGKI
>NZ_CP015107.1|WP_060382325.1|2585407_2585746_+|helix-turn-helix-transcriptional-regulator
MNEFEDLGVRFNRYLISKGLGVNQIARILELSGSQISNIKNGKVFGADKMFKILNTFTDLDANWLFRGESMEHPEIDINRLDYIIELQKERIIDLKKENAELKKMLKAKSTE
>NZ_CP015107.1|WP_063743878.1|2585753_2587856_-|ATP-dependent-DNA-helicase-RecG
MSLLETPIEYLKGVGPQRGELLRKELNIHKYADLVNLYPNRYIDRTRYYKINELIPSNSEVQIVGKIIHLKTVEFGKGKKRLVATFIDGTGEIELVWFQGIKWIRENIKINTPYVIFGKTNAFNGLFSMPHPEMELIEEHKANLRTSMQAVYPSTEKLQNKGISNKVINKMMQQLFIETHTLFMENLPSYLLEELQLIPKNSALFNIHFPKSQELLQKAQFRLKFEELFFIQLQLISKNLVRKHKIKGHPFEKVGYYFNEMYTKHLPFDLTNAQKKVLKEIRNDLGNPAQMNRLLQGDVGSGKTIVALMSMLLALDNGFQACIMAPTEILATQHFNGITELAKALNINIKLLTGSTKTSDRKIIHEELQKGSLHILIGTHALLEDKVQFKNLGLAIIDEQHRFGVEQRSKLWKKAALPPHVLVMTATPIPRTLAMSLYGDLDVSIIDELPPGRKPIQTVHRYDSNRLKVWKFMRDEIEKGRQVYVVYPLIQESESMDYKDLMDGYESISRDFPLPRYAISIVHGKMKAAEKEEEMNRFAAGKTNIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRGAEQSYCILMTGVKLSNESKIRMETMCKTNDGFEISEVDLKLRGPGDIMGTQQSGVLNLQIADLVKDRDILQLARHHAIRLLKEDPSMEKLTHQKLKQALIELNKKKNIWNYIS
>NZ_CP015107.1|WP_060383841.1|2587884_2588625_-|diphthine--ammonia-ligase
MKSKAIFNWSSGKDSALALYKILKTNDYDVITLLTSVNKHYDRISMHGVRTELLEEQAKSLKIPLYKMEIPEAPTMEIYETIMRSTLSNFKDKGISISIFGDIFLEDLRNYREDKLKELGFKGVFPLWKIDTKELIYDFLNLGFKTIVTCVNERYLDKSFVGRIIDHQFINDLPKNVDPCGENGEFHTFTFDGPIFSKPINFEIGEIVHRKYERPKSDNSNKTCNTSSDDVNLNYGFWYIDLLKKN
>NZ_CP015107.1|WP_060382323.1|2589142_2590762_-|ATP-binding-cassette-domain-containing-protein
MLTVSNLSVQFGKRILFDEVNVTFTQGNCYGIIGANGAGKSTFLKILSGDIDPTSGHVILEPGKRMSVLNQNHNMFDDHTVLETVLMGNKILYAVKKEMDELYLDYNDANADRIGELQIQFEEMNGWNADSDAATLLSNLGIGPDYHYTLMSEMEGKLKVRVLLAQALFGNPDVLIMDEPTNDLDFETIGWLENFLANYENTVLVVSHDRHFLDAVCTHVSDIDFGKITHYSGNYTFWYESSQLAAKQRAQQNKKAEEKKAELEEFIRRFSANVAKSKQATSRKKMIEKLNISDIKPSSRRYPAIIFDQEREAGDQILNIQNLSASVDGEVLFKNVDLNMAKGDKIVVFSKDSRATSAFYEIINSNMTADSGTFDWGVTTNQSYLPADNHSFFQNDYTLVDWLRQWAKTEEERDEVYVRGFLGKMIFSGEEALKTGRVLSGGEKVRCMISRMMMLRANVLMLDEPTNHLDLESITAFNNSLKNFKGSVLFTTHDHEFAQTVGNRILELTPNGVIDRYMTFDEYLEDDKIQEMRKKMYTT
>NZ_CP015107.1|WP_063743879.1|2590864_2591593_+|diacylglyceryl-transferase
MKIPFENAPFYHYVLEILAFFIGMRFYFYLKKKNRIISDENRLWILLGAMIGAFIGSRFIAVLETPSLIHKMSFLTVFQSKTVAGGFFGGLFGVEIIKKIIGEKKASGDLYVYPIIVALIIGRIGCFGMGIKEPTYGIETSFFTGINLGDEKQRHPVVLYEITFLVCLIFLFNKLKNVDLINGDRFKLFFLLYFLYRFFIEFLKPYESLILKLSIIHWISIFIFIYYYHFIIRIIKKILNAQ
>NZ_CP015107.1|WP_063743880.1|2591582_2592968_+|radical-SAM-protein
MPNRDYIYYDATQSICPECLHLCNAKIVFKDEKVWMLKHCKTHGDSRVMIADDIEYYRQIRNYNKQSEVPLKFNTKLHYGCPYDCGLCPDHEQHSCLSIVEVTDRCNLACPTCYASSAPNYGNHRQLDEIEKMLDAIVANEGEPDVVQISGGEPTVHPQFFEILDLAKSKPIKHLMVNTNGIRIAKDISFVEKLASYMPDFEIYLQFDSFKPEVLEKMRGEDLSEIRKKAIENLNQFNLSTTLVVTLQKGENDDEIGKILEYALQQKSVRGVTFQPTQVAGRNENYDDNQGRITLTEVRRKIYEQYPVFTPQDLIPVPCNPDALCMAYALKMNGEVFPMTNLINPEDLLNNSKNTIVFESDEKLKNHLLTLFSTGISVDCAEEELGELMCCLPRVKSDHLQYDNLFRIIIMNFMDAHDFDVRAVKKSCVHIVDKKGKLIPFETMNLFYRDESIKEIRKQLN
>NZ_CP015107.1|WP_145915600.1|2593225_2594089_-|hypothetical-protein
MLLRPLLFALLAIQGIGAQIKKQEHKDFRTPQEIELEQVVLKMRAQFKQHYRSNTTDFYTVKAVAQINQTPFYSFKGTCLLKSVSPIGCESTYQLDKAKFDTYQQAENAIFKKERNPREQIPFYLTSVFGQLEHFYESYAFLNRKDLQFKLEETSDKANYILHFRSQNPKLPLLGSLTLTKKECRPITLEYHLLSDYTFEMSTDNFNYKQSTGYTVRVLKEVVKITFQETNGVFVVSQYESDYRFKNETKDTSVTIQGDVGHSVIKMSKTTNEVKICKKDFDIDIFE
>NZ_CP015107.1|WP_063743882.1|2594377_2596432_+|ATP-binding-protein
MSFKLLAIRPLDGCNEKFLKNLEENRIYQFYNDYTFYDENGVIKEFGKDNYKEVKKIEYKETVPADLYNQGQLKINVSAIVGKNGSGKSALTELLFASIYNYSKKNIPEFSKVDKYLDVACEIFFCEHHSFEEDEKIIKKDYYYALKINKDKIEVHFFSQKMNNVNEYLFYNIVSNYSLYGLNSKILDSWIDQLFHKNDGYQTPLVLNPMRTEGIIDINREYELAKDRLISNVLESQSVNKNATEILKNKRVKRIILKPKQKEIELTEEERKNKTKYLKQYLKLIFDSLKNSHVEENISDEKINEIIFSKEKIVTYCTDYILFKLRKISTIYSKSETIFKEINYEDNSSVDSFLKNLELREHGSDITFKLRKVINYLKYDIYEKKEKLTFEGIEIKELATRIDDVRRKMLLDYNTEMGNKNVDLFTYPFWLVSNIAFVPPSIYEIDFEFDTGGEFSSLSSGETQKIFSINTILYHLINLNSKHNSNLYTNSEGKSVDIKYEFINIIFDEIELYFHPEMQKDFLNDLLYKINSTYLSGLKAINILFITHSPFILSDIPKQNVLFLSDGKPQEFEKKNTFGANIADLLQDSFFFNNDSEHKLLMGDFAKSEINKTIKWLNDMKNEIDESKINVIEKAKHKRIIDLIDEPLIRTKLTEMYYEVFDKEYLLDKEKEYIKNRAIELGLL

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Crispr_ID: NZ_CP015107_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015107_6

3130855-3130944

TypeVI-B2,TypeVI-B1

Consensus_repeat	Method
GTTGGGAAAGCCCTTATTTTGAAGG	CRISPRCasFinder

1 spacers

cas13b

The CRISPR arrays of NZ_CP015107_6

>merge|NZ_CP015107|6|3130855-3130944|CRISPRCasFinder
GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAACTTATTTGGCATAATTTCTAAATTTAAAAGGTTGGGAAAGCCCTTATTTTGAAGG

>NZ_CP015107|6|6|3130855-3130944|CRISPRCasFinder
GTTGGGAAAGCCCTTATTTTGAAGG	GTATCTACAACTTATTTGGCATAATTTCTAAATTTAAAAG
GTTGGGAAAGCCCTTATTTTGAAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015107.1\|WP_063744070.1\|3126651_3130293_+\|hypothetical-protein	cas13b	cas13b_CAS_V-B1	gnl\|CDD\|380476
NZ_CP015107.1\|WP_081078389.1\|3139675_3141340_-\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	unknown	unknown	gnl\|CDD\|236020
NZ_CP015107.1\|WP_060381850.1\|3135520_3136933_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NZ_CP015107.1\|WP_060381863.1\|3117331_3118987_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340952
NZ_CP015107.1\|WP_060381862.1\|3119071_3119992_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015107.1\|WP_060381847.1\|3138337_3139171_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225543
NZ_CP015107.1\|WP_060381856.1\|3125968_3126505_-\|DUF1697-domain-containing-protein	unknown	unknown	gnl\|CDD\|377954
NZ_CP015107.1\|WP_063744067.1\|3116360_3117248_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|225510
NZ_CP015107.1\|WP_060381849.1\|3136994_3137489_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015107.1\|WP_063744073.1\|3133641_3134490_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|372314
NZ_CP015107.1\|WP_060381851.1\|3134677_3135379_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015107.1\|WP_063744069.1\|3124181_3125936_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224771
NZ_CP015107.1\|WP_060381861.1\|3119993_3120539_-\|Smr/MutS-family-protein	unknown	unknown	gnl\|CDD\|376599
NZ_CP015107.1\|WP_060381846.1\|3139249_3139591_-\|DUF2853-family-protein	unknown	unknown	gnl\|CDD\|378540
NZ_CP015107.1\|WP_060381859.1\|3121044_3122289_-\|ornithine--oxo-acid-transaminase	unknown	unknown	gnl\|CDD\|273853
NZ_CP015107.1\|WP_081248778.1\|3120585_3120897_+\|DUF2752-domain-containing-protein	unknown	unknown	gnl\|CDD\|378499
NZ_CP015107.1\|WP_063744068.1\|3122549_3124001_+\|DUF839-domain-containing-protein	unknown	unknown	gnl\|CDD\|225752
NZ_CP015107.1\|WP_063744072.1\|3132750_3133587_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|372314
NZ_CP015107.1\|WP_063744071.1\|3131847_3132696_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|372314
NZ_CP015107.1\|WP_060381848.1\|3137460_3138165_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP015107.1\|WP_063744070.1\|3126651_3130293_+\|hypothetical-protein	gnl\|CDD\|380476	cd20478, Cas13b_Bz-like, Class 2 type VI-B CRISPR-associated RNA-guided ribonuclease Cas13b from Bergeyella zoohelcum and similar Cas13b proteins. CRISPR-Cas (clustered regularly interspaced short palindromic repeats and CRISPR-associated proteins) adaptive immune systems defend microbes against foreign nucleic acids via RNA-guided endonucleases. These systems are divided into two classes: class 1 systems utilize multiple Cas proteins and CRISPR RNA (crRNA) to form an effector complex while class 2 systems employ a large, single effector with crRNA to mediate interference. Class 2 type VI CRISPR-Cas13 systems use a single enzyme to target RNA using a programmable crRNA guide and are divided into four subtypes based on the identity of the Cas13 protein (Cas13a-d). The Cas13 proteins are capable of both pre-crRNA processing and target RNA cleavage, which protect the host from phage attacks. Once bound to a target RNA, their non-specific RNase activity is activated. Cas13b has many distinctive features compared to the other Cas13 proteins, including the lack of significant sequence similarity, disparate crRNA repeat region, and double-sided protospacer flanking sequence (PFS)-dependent target RNA cleavage.	0
NZ_CP015107.1\|WP_081078389.1\|3139675_3141340_-\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	gnl\|CDD\|236020	PRK07449, PRK07449, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated.	1.37894e-132
NZ_CP015107.1\|WP_060381850.1\|3135520_3136933_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	1.20612e-123
NZ_CP015107.1\|WP_063744069.1\|3124181_3125936_+\|hypothetical-protein	gnl\|CDD\|224771	COG1858, MauG, Cytochrome c peroxidase [Inorganic ion transport and metabolism].	1.69832e-63
NZ_CP015107.1\|WP_060381847.1\|3138337_3139171_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225543	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only].	1.40879e-79
NZ_CP015107.1\|WP_060381856.1\|3125968_3126505_-\|DUF1697-domain-containing-protein	gnl\|CDD\|377954	pfam08002, DUF1697, Protein of unknown function (DUF1697). This family contains many hypothetical bacterial proteins.	5.22528e-51
NZ_CP015107.1\|WP_063744067.1\|3116360_3117248_-\|EamA-family-transporter	gnl\|CDD\|225510	COG2962, RarD, Predicted permeases [General function prediction only].	5.45161e-29
NZ_CP015107.1\|WP_063744073.1\|3133641_3134490_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	8.19275e-74
NZ_CP015107.1\|WP_060381863.1\|3117331_3118987_-\|hypothetical-protein	gnl\|CDD\|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.6256e-36
NZ_CP015107.1\|WP_060381861.1\|3119993_3120539_-\|Smr/MutS-family-protein	gnl\|CDD\|376599	pfam01713, Smr, Smr domain. This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2. This domain exhibits nicking endonuclease activity that might have a role in mismatch repair or genetic recombination. It shows no significant double strand cleavage or exonuclease activity. The full-length human NEDD4-binding protein 2 also has the polynucleotide kinase activity.	1.32843e-08
NZ_CP015107.1\|WP_060381846.1\|3139249_3139591_-\|DUF2853-family-protein	gnl\|CDD\|378540	pfam11015, DUF2853, Protein of unknown function (DUF2853). This bacterial family of proteins has no known function.	5.10177e-61
NZ_CP015107.1\|WP_060381859.1\|3121044_3122289_-\|ornithine--oxo-acid-transaminase	gnl\|CDD\|273853	TIGR01885, Ornithine_aminotransferase, ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI\|PG1271), and the other from Staphylococcus aureus (OMNI\|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP\|P38021).	0
NZ_CP015107.1\|WP_081248778.1\|3120585_3120897_+\|DUF2752-domain-containing-protein	gnl\|CDD\|378499	pfam10825, DUF2752, Protein of unknown function (DUF2752). This family is conserved in bacteria. Many members are annotated as being putative membrane proteins.	4.24533e-11
NZ_CP015107.1\|WP_063744068.1\|3122549_3124001_+\|DUF839-domain-containing-protein	gnl\|CDD\|225752	COG3211, PhoX, Predicted phosphatase [General function prediction only].	9.25853e-08
NZ_CP015107.1\|WP_063744072.1\|3132750_3133587_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	1.49186e-72
NZ_CP015107.1\|WP_063744071.1\|3131847_3132696_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	9.63828e-73

>NZ_CP015107.1|WP_063744070.1|3126651_3130293_+|hypothetical-protein
MSSKNESYNKQKTFNHYKQEDKYFFGGFLNNADDNLRQVGKEFKTRINFNHNNNELASVFKDYFNKEKSVAKREHALNLLSNYFPVLERIQKHTNHNFEQTREIFELLLDTIKKLRDYYTHHYHKPITINPKIYDFLDDTLLDVLITIKKKKVKNDTSRELLKEKLRPELTQLKNQKREELIKKGKKLLEENLENAVFNHCLRPFLEENKTDDKQNKTVSLRKYRKSKPNEETSITLTQSGLVFLMSFFLHRKEFQVFTSGLEGFKAKVNTIKEEKISLNKNNIVYMITHWSYSYYNFKGLKHRIKTDQGVSTLEQNNTTHSLTNTNTKEALLTQIVDYLSKVPNEIYETLSEKQQKEFEEDINEYMRENPENEDSTFSSIVSHKVIRKRYENKFNYFAMRFLDEYAELPTLRFMVNFGDYIKDRQKKILESIQFDSERIIKKEIHLFEKLGLVTEYKKNVYLKETSNIDLSRFPLFPSPSYVMANNNIPFYIDSRSNNLDEYLNQKKKAQSQNRKRNLTFEKYNKEQSKDAIIAMLQKEIGVKDLQQRSTIGLLSCNELPSMLYEVIVKDIKGAELENKIAQKIREQYQSIRDFTLNSPQKDNIPTTLIKTISTDTSVTFENQPIDIPRLKNAIQKELALTQEKLLNVKQHEIEVNNYNRNKNTYKFKNQPKDKVDDNKLQRKYVFYRNEIGQEANWLASDLIHFMKNKSLWKGYMHNELQSFLAFFEDKKNDCIALLETVFNLKEDCILTKDLKNLFLKHGNFIDFYKEYLKLKEDFLNTESTFLENGFIGLPPKILKKELSKRLNYIFIVFQKRQFIIKELEEKKNNLYADAINLSRGIFDEKPTMIPFKKPNPDEFASWFVASYQYNNYQSFYELTPDKIENDKKKKYKNLRAINKVKIQDYYLKLMVDTLYQDLFNQPLDKSLSDFYVSKTDREKIKADAKAYQKRNDSFLWNKVIHLSLQNNRITANPKLKDIGKYKRALQDEKIATLLTYDDRTWTYALQKPEKENENDYKELHYTALNMELQEYEKVRSKKLLKQVQELEKQILDKFYDFSNNATHPEDLEIEDKKGKRHPNFKLYITKALLKNESEIINLENIDIEILIKYYDYNTEKLKEKIKNMDEDEKAKIVNTKENYNKITNVLIKKALVLIIIRNKMAHNQYPPKFIYDLATRFVPKKEEEYFACYFNRVFETITTELWENKKKAKEIV
>NZ_CP015107.1|WP_060381856.1|3125968_3126505_-|DUF1697-domain-containing-protein
MKKHLALLRGINVSGHNMIKMDDLKVLLERMGFENVVTYIQSGNVFFECEEANGPSVGFKIKQEIFKEWGYEVPVMVLGKEDLEGALSNNPYLKEKEADPSKIYFAFLNKELNESAIHDLKISQVKPDEATVDKNRIYLKYINGAGKTRMDNKYIEKKLNVLSTIRNFNTVTKLLEMF
>NZ_CP015107.1|WP_063744069.1|3124181_3125936_+|hypothetical-protein
MKNIVFLILFICSISCKKNQYQSIQSIQNTQNLLKLNFKYFTNEINTFEEITKKNVTADQLRNQFQKTRLAFKKSEEFIAYYFPSSFIKINGAPIDENDLNETNRKIEYATGFQKIEELIFRPSINKILLLENIEILKGHLVVLTQQINNLQLNDSNIFEIQKLQLLRVLSLGITGFDSALALHSLPEAQSSLKGIQEVINGFQFDKSFNTAISKAISYLKKNNSFNTFDRAVFITQYANPIFQNIFRIQQKLHIKNNPFLTAINFNKKTPFETEAYDPNYFAPFYNKNPSKLQIHLGKQLFFDKILSGNNQINCASCHIPNQAYADHKTKAVANKTSRNTPTLLNAGLQNTQFADNRIRYLEDQAKAVINNPDEMHGSFTLALKKLNKNQMYRNLFHKVFPSSKNITEENLLQSIASFVRSLSKLNSKFDEYLRGKASLTIQEKKGFNLFMGKAKCATCHFFPLFNGSIPPLYQKTESEILGVPSRIHSKQIDPDLGEYHITKAPLKKYAFKTPTVRNASITFPYMHNGVFNTLEEVINFYNKGGGKGNGIIVEHQTLAQNPLLLSKEEMQNIIRFIQTLNNP
>NZ_CP015107.1|WP_063744068.1|3122549_3124001_+|DUF839-domain-containing-protein
MNLKNMFFTSIIISVIACNKEENTNTDSAVENTRIEFKNHSKTPALIKTMPEFSSIQTYSLFSSEDQFINSPSFVFGGSADGSGLIKNPDDSFTFLVNNEDNFSVSKITFDKTFKPIAGEYVLNSKGAGTRLCSATLVMPEIHGFGPFFLTCGESDSESLVHKIAPTDTHINASIPKTIPAFGRWSAENAVPLSKNAYAGQTIIMIGDDDNKDYGGQLVMYKSTTGDLNNGKVYVIKRTDNESIETKMTENNTYDIEFVEITNAKTNTGLQNNQAAQAANAIIFGRVEDIDWNKTTGKEREIYFNVTGQNNTGVNANNTRTKYGRLYRLELDPSNPLKGKLTVMLDGDNKSGLAKTFQNIDNICVTKNYVYLQEDANGYGDESHDAYIYQYDIAKKTLKVVFELDHRRNDTSDKYLGAKSPKGSWEYGALLDISDIIGKDNTFMLSIQPHSWEKEDFKGKDGGGLRPDEKQGSQVILINGLPR
>NZ_CP015107.1|WP_060381859.1|3121044_3122289_-|ornithine--oxo-acid-transaminase
MSVLEKLSSAEAIALEDKHGAHNYHPLPVVLSRGEGVYVWDVEGKKYYDFLSAYSAVNQGHCHPRIVDAMVKQAQTLTLTSRAFYNDKLGVYERYVTNYFGFDKVLPMNTGAEAVETALKLCRKWAYERKGINENEAQIIVCENNFHGRTTTIISFSNDENARKNFGPYTAGFIKIAYDDLEALEQAITSSPNVAGFLVEPIQGEAGVYVPSEGYLAKAKALCEKHNVLFIADEVQTGIARTGKLLAVHHESVQPDILILGKALSGGAYPVSAVLANDGIMNVIKPGQHGSTFGGNPVAAAVAIEALEVVKEEQLAENAERLGKIFREELAKFIETSNVATLVRGKGLLNAVVINDTEESDTAWNICVKLAEKGLLAKPTHGNIIRFAPPLVMNEEQLRDCVAIIIDTLKAFEK
>NZ_CP015107.1|WP_081248778.1|3120585_3120897_+|DUF2752-domain-containing-protein
MNFVFTWVEKIIMNDFMIPCLFKMVFKVDCLGCGAQRAFILLLKGEFKNAFFMYPPLFSVLPYILLITGQYYKAFSFSNKYIRSLGYINLIIMFISYFIKHLT
>NZ_CP015107.1|WP_060381861.1|3119993_3120539_-|Smr/MutS-family-protein
MFSKGDKVSVLDDNINGVVIKIATDQVWIETEEGFELPFKNNELILIGESGMDFSTTNFYAIKKEKEISKPKNFIKEKKSKKDETILEVDLHIEKLVQSTKGMNNYDILNIQIETAQRQLDFAIKNKIQKVVLIHGVGEGILKAELDFLLNKYSYISFQEASFQKYGFGATEVYINQKNFL
>NZ_CP015107.1|WP_060381862.1|3119071_3119992_+|hypothetical-protein
MKNFWFLLTSLVLLNSCDDGNIIEETFNFSSITTQKCNNTNTLYKINDREALIFITPETSFPNEEGTKTYTIGTTHNLVYKKFYSTISSNEICSTGSVPIAEQWTVSGGTIEITSNKIISTNDPSKIVGYNHKILFKNITFNTPNKQLVYDQYDFGNYTTDLIDLKFDYKNAVMQNCSGNNLIFKYNNNNALLLDIDPNLYKHQTVGTKTALINNVNKISYRVYNGNLNSNFFCQSIPPTSPSLTGEWIAQNGTIDNDGIIVIETTQQTSTTYRHVIKLRKVFFKNGIKTYSPNPNGDYEFGEIIN
>NZ_CP015107.1|WP_060381863.1|3117331_3118987_-|hypothetical-protein
MNSQVTKTNYPALYTLVTVFFFWGFIAAGNSIFIPFCKNYFSLDQFQSQLIDFAFYTAYYLGALLLFAFGNAKGKDIVGSWGHKKSIIYGLLFSALGAGAMILAVKGSIYAGMLIGLFIVALGFSLQQTAANPFAILLGDPKTGASRVNLGGGINSLGTTIGPIIVALALFGTTATVSDDQIKHLELDKVIFLYVCVGLLFVGSATLFYFSKKVPSGISNEPMEKANKALMTLVVMTILLAACFTFIFKTYQNVNDLNSSDLLDLNKYRMNWLIGALVVVLGGIFYAYTSAKKNPEGWGAMQYPQLVLGMLAIFVYVGVEVSIGSNLGELLKLPEFGSLQSSDIAPYISMYWGGLMIGRWAGAISVFDLKVIKKIIALIVVPLIAFGIVLGANILSGKDMKPLYFYVLCVLLQIIAMFLSKDKPARTLMIFALFGLMAMLIGLFSTGIIAVYAFLAGGLACSIMWPAIFSLSIFGLGKYTSQGSAFLIMMILGGGIIPPIQGKISDLIGIHNSYIVAVLCFAYLTFFAILVKNILKKQNIDVDSIEVKEGH
>NZ_CP015107.1|WP_063744067.1|3116360_3117248_-|EamA-family-transporter
MNLNKYFVAAFSSFFIWGFFSLAIKKLHAYPSLDILFYRVFYATFLLLLINLLFRKHVVFNNFKTFNELSIKIKKKTIFLTVLGGLLLVLNWFLFMYCVNHVSIQSASFAYLICPIITTILAYFILKENLNKGQWIAVGLFIISCGILSYGHIEDLIYSLIIASTFAMYLISQRKNNQFDRFVVLTIQLIISSLLLLPFYFFYKSETPIVLLFWEVMTLIVILFTILPLFLNLYALRGVDSKTVGVLMYINPLINFFLALFYFREEINLIQLSAYLLIIVAIILFNINYFVKKEG
>NZ_CP015107.1|WP_063744071.1|3131847_3132696_+|Rpn-family-recombination-promoting-nuclease/putative-transposase
MKAKYINPFTDFGFKKIFGEEASKNLLIDFLNTLLPEHDQIKELSFKNTEQLGITDLDRKAIYDIYCQNEKGEKFIVELQKAKQNFFKERTIYYATFPIREQAEKGEWNYNLKSVYCIGILDFTFDDYESEPEKSEVVHTIKLKNQNGKVFYDKLTYIYLEMPNFKKQETDLNSRLDKWLYFIKNLEDFQNIPTIFKDEVFTQAFEKAELANFGQWELDKYESSLKVYRDLKSIIDTAFDDDKEEGKIQGKIEIAKSLKKLGISIEIIIQSTGLTQEEINKL
>NZ_CP015107.1|WP_063744072.1|3132750_3133587_+|Rpn-family-recombination-promoting-nuclease/putative-transposase
MKAKYINPFTDFGFKKIFGEEASKNLLIDFLNTLLPEHDQIKELSFKNTEQLGITDLDRKAIYDIYCQNEKGEKFIVELQKAKQNYFKERTIYYSTFPIREQAEKGEWNYNLKAVYCVGVLDFTFDDYESEPEKSEVVHTIKLKNQNGKVFYDKLTYIYLEMPNFKKQETDLNSRLDKWLYFIKNLEDFQNIPTIFKDEVFTQAFEKAELANFGQWELDKYENSLKVYRDLKSIIDTAFDDGKIEGKIETAKSLKKLGISIEIIIQSTGLTQEEINKL
>NZ_CP015107.1|WP_063744073.1|3133641_3134490_+|Rpn-family-recombination-promoting-nuclease/putative-transposase
MKAKYINPFTDFGFKKIFGEEASKNLLIDFLNTLLPEHDQIKELSFKNTEQLGITDLDRKAIYDIYCENEKGEKFIVELQKAKQNFFKERTIYYATFPIREQAEKGEWNYNLKSVYCIGILDFTFDDYESEPEKSEVVHTIKLKNQNGKVFYDKLTYIYLEMPNFKKQETDLNSRLDKWLYFIKNLEDFQNIPTIFKDEVFTQAFEKAELANFGQWELDKYESSLKVYRDLKSIIDTAFDDGKEEGKIQGKIEIAKQAKTMGLSIPDIIKLTGLSKKEINEL
>NZ_CP015107.1|WP_060381851.1|3134677_3135379_+|hypothetical-protein
MGFFDIFFKKKQAVTNLENSKQTQDVQLNKENTFVSTVDHLEHKIIRSLTNEQREAIHKSTILLQAGQLYMHYWTDHLVCKDRNDPEWQNKVMFFWKAEEPFPKKSLPPIFETFKTKHFLFVGDTSKISLQIGQAIPWFGMPGLGQKHSCEMNGQKITIPELNKIGLVEYIEPVELKDDNLDILSDKDNYFFLIDERITPFQNGNFLLNGIPIPIDMAYSIGGIHIIKKIDLE
>NZ_CP015107.1|WP_060381850.1|3135520_3136933_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MGRKKDKQVVFENVKVLDAGAKGVCVAKAPEGQVIFLSNVVPGDVVDIQTFKKRKSYYEGKAFKFHSYSEHRVDPVCEHSGVCGGCKWQNMNYNQQLFYKHQEVENNLKRIGKIELPVFEPILGSEKQFFYRNKMEFGFSSSRWMTPEEINSGEELDNKNAVGFHIPKMWDKILNINKCHLQQDPSNDIRNEIRRFANENDLTFFNPREHGGLLRTLMIRTASTGEIMVVIQFFDHNQKQIEMVMNFLAERFPEITSLQYVVNQKANDTLYDQEIILFKGRDYILEEMEGLQFSINAKSFYQTNSEQAYELYSITRDFAGLTGNELVYDLYTGTGTIAQFVSKKAKKVIGVEAVPEAISDAKINAERNNISNCEFFVGDMKNVFNDDFIATNGHPDIIITDPPRDGMHADVVEQILKIAPKKVVYVSCNSATQARDLALMDKMYKVTRVRPVDMFPQTHHVENVVLLEKR
>NZ_CP015107.1|WP_060381849.1|3136994_3137489_+|hypothetical-protein
MKKIFLGLFVILSTLPFLNCEPDDVCPQGTPTTPRMIVQFFDNNNPTNPKTITDLKVTAEGMSSSLDFASSNKIELPLKVNNNQVRYTFQINSKNSTLAKEDQITLNYSRNDVYISRACGYKTEFTLNTLNGATLTTPKNWIQEVTIQKTSIVNENETHLKIFF
>NZ_CP015107.1|WP_060381848.1|3137460_3138165_+|hypothetical-protein
MKHISKFSFSLLLTIYTFTISQAQEKTNDTIKKTERYGIRIGTDLSKITRSIFDKNYKGLELVGDYRIGQKMYLATEIGNEKKITEDKRLNFTTTGSYLKVGFDYNFYQNWLNMEDMVHLGLRYGFSSFSQALTSYKIYNTTGYFPQADAVIANQNYKDLTAHWTEVVAGIKAKIFNNFYAGFSLRINYLLSEKKPENFNNLYIPGFNRTYDGQFGAGWNYSITYFIPLYKKKG
>NZ_CP015107.1|WP_060381847.1|3138337_3139171_-|GntR-family-transcriptional-regulator
MIEIGKYNTLKIARNTNVGLYLTDGEKDVLLPNKYVPKEYEIEADIEVFIYLDHEERPVATTLEPYIFLNEFSLLRVNYVNKFGAFMDWGLEKDLFVPFKEQARPMEEGKRYLVYMYLDKQTNRLVGSSRLNQFLNNQNLNVEKGEEVDLIVSHISDTGINVIINEKHKGLIYKDQIFEDLRTGDRIIGYIKNIRPDGKIDISRQPLGFERIDASAQKILEELKAGRGMLKLHDNSSPEDIKTILQMSKKTFKKAIGTLYREKIIELRPDGIYLLKS
>NZ_CP015107.1|WP_060381846.1|3139249_3139591_-|DUF2853-family-protein
MSKRDELIEKYATDLKEKCGVTPDMELLTKVVIGCGPSIYNQDSATVSGSQQSELDTVKNNFLIKKLGLSDNPELDAAIDSVMERYGRSNRNKYRAVVYYLLTLHFKKESIYN
>NZ_CP015107.1|WP_081078389.1|3139675_3141340_-|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase
MKPTAIYPKIPLAQSIIEMCKKKGLKHIVISPGSRNAPLTIGFSNQPEFNCYSIVDERCAGFFALGLAQQLQEPVALICTSGSALLNYYPAISEAFYSQIPLVVISADRPIDKIDIGDGQTIRQANVFANHILYNANLQEAASLENDRLIQEALFFSVSQKGPVHINAPFEEPLYETISEPTIEPTWFNFEKQNEPLETLDFFAEEWSQAQKKIILIGENHSDSIDTKYLDILARDPSVIVMTEVTSNLHHENFITNIDTIITPFSEKEFERYKPEILLTLGGMIVSKRIKAFFRKYQPNAHWHIDPLRAYNTYDCLNYHFKEKPNTFFERFLKLTSYKESSFQKELLAIRFQRKIAHNNYLKELIFSDLKVFQIITELLPKNIQLQISNSSAIRYAQLFPIDPSISVYCNRGTSGIEGSTTTAIGAAVASKKTTYLITGDISFFYDSNALWNHYIPNDFKIIIINNGGGGIFRILPGHQENETFNTFFETSHNLTAEYLAKMYGLDYFKAKEEKELRTNWAFFSSLNKPAIYEIFTPEKQNNEVLLQYFKKLK

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Crispr_ID: NZ_CP015107_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015107_5

3130430-3130730

TypeVI-B2,TypeVI-B1

NA:VI-B1

Consensus_repeat	Method
TGTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAACT	PILER-CR
GTTGGGAAAGCCCTTATTTTGAAGG	CRISPRCasFinder
GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAACT	CRT

4 spacers

cas13b

The CRISPR arrays of NZ_CP015107_5

>merge|NZ_CP015107|5|3130430-3130730|PILER-CR,CRISPRCasFinder,CRT
GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAACTTTAAAGTCACCTCAAATGAGGTGGCTTTTGTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAACTTCGTGGTAGTTTCCTTCAAAAGTGATGATGTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAACACAGATATGGCACTTATAACCCCCAAAACTGTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAACTGTTATTGCGTCTTCGATAGAAGCAACAAGGTTGGGAAAGCCCTTATTTTGAAGGAGGGACGAGCGT

>NZ_CP015107|5|2|3130430-3130664|PILER-CR
GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAACTT	TAAAGTCACCTCAAATGAGGTGGCTTTT
GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAACTT	CGTGGTAGTTTCCTTCAAAAGTGATGAT
GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAACAC	AGATATGGCACTTATAACCCCCAAAACT
GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAACT

>NZ_CP015107|5|5|3130430-3130719|CRISPRCasFinder
GTTGGGAAAGCCCTTATTTTGAAGG	GTATCTACAACTTTAAAGTCACCTCAAATGAGGTGGCTTTT
GTTGGGAAAGCCCTTATTTTGAAGG	GTATCTACAACTTCGTGGTAGTTTCCTTCAAAAGTGATGAT
GTTGGGAAAGCCCTTATTTTGAAGG	GTATCTACAACACAGATATGGCACTTATAACCCCCAAAACT
GTTGGGAAAGCCCTTATTTTGAAGG	GTATCTACAACTGTTATTGCGTCTTCGATAGAAGCAACAAG
GTTGGGAAAGCCCTTATTTTGAAGGA

>NZ_CP015107|5|2|3130430-3130730|CRT
GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAACT	TTAAAGTCACCTCAAATGAGGTGGCTTTT
GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAACT	TCGTGGTAGTTTCCTTCAAAAGTGATGAT
GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAACA	CAGATATGGCACTTATAACCCCCAAAACT
GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAACT	GTTATTGCGTCTTCGATAGAAGCAACAAG
GTTGGGAAAGCCCTTATTTTGAAGGAGGGACGAGCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015107.1\|WP_063744070.1\|3126651_3130293_+\|hypothetical-protein	cas13b	cas13b_CAS_V-B1	gnl\|CDD\|380476
NZ_CP015107.1\|WP_081078389.1\|3139675_3141340_-\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	unknown	unknown	gnl\|CDD\|236020
NZ_CP015107.1\|WP_060381850.1\|3135520_3136933_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NZ_CP015107.1\|WP_060381863.1\|3117331_3118987_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340952
NZ_CP015107.1\|WP_060381862.1\|3119071_3119992_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015107.1\|WP_060381847.1\|3138337_3139171_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225543
NZ_CP015107.1\|WP_060381856.1\|3125968_3126505_-\|DUF1697-domain-containing-protein	unknown	unknown	gnl\|CDD\|377954
NZ_CP015107.1\|WP_063744067.1\|3116360_3117248_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|225510
NZ_CP015107.1\|WP_060381849.1\|3136994_3137489_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015107.1\|WP_063744073.1\|3133641_3134490_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|372314
NZ_CP015107.1\|WP_060381851.1\|3134677_3135379_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015107.1\|WP_063744069.1\|3124181_3125936_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224771
NZ_CP015107.1\|WP_060381861.1\|3119993_3120539_-\|Smr/MutS-family-protein	unknown	unknown	gnl\|CDD\|376599
NZ_CP015107.1\|WP_060381846.1\|3139249_3139591_-\|DUF2853-family-protein	unknown	unknown	gnl\|CDD\|378540
NZ_CP015107.1\|WP_060381859.1\|3121044_3122289_-\|ornithine--oxo-acid-transaminase	unknown	unknown	gnl\|CDD\|273853
NZ_CP015107.1\|WP_081248778.1\|3120585_3120897_+\|DUF2752-domain-containing-protein	unknown	unknown	gnl\|CDD\|378499
NZ_CP015107.1\|WP_063744068.1\|3122549_3124001_+\|DUF839-domain-containing-protein	unknown	unknown	gnl\|CDD\|225752
NZ_CP015107.1\|WP_063744072.1\|3132750_3133587_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|372314
NZ_CP015107.1\|WP_063744071.1\|3131847_3132696_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|372314
NZ_CP015107.1\|WP_060381848.1\|3137460_3138165_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP015107.1\|WP_063744070.1\|3126651_3130293_+\|hypothetical-protein	gnl\|CDD\|380476	cd20478, Cas13b_Bz-like, Class 2 type VI-B CRISPR-associated RNA-guided ribonuclease Cas13b from Bergeyella zoohelcum and similar Cas13b proteins. CRISPR-Cas (clustered regularly interspaced short palindromic repeats and CRISPR-associated proteins) adaptive immune systems defend microbes against foreign nucleic acids via RNA-guided endonucleases. These systems are divided into two classes: class 1 systems utilize multiple Cas proteins and CRISPR RNA (crRNA) to form an effector complex while class 2 systems employ a large, single effector with crRNA to mediate interference. Class 2 type VI CRISPR-Cas13 systems use a single enzyme to target RNA using a programmable crRNA guide and are divided into four subtypes based on the identity of the Cas13 protein (Cas13a-d). The Cas13 proteins are capable of both pre-crRNA processing and target RNA cleavage, which protect the host from phage attacks. Once bound to a target RNA, their non-specific RNase activity is activated. Cas13b has many distinctive features compared to the other Cas13 proteins, including the lack of significant sequence similarity, disparate crRNA repeat region, and double-sided protospacer flanking sequence (PFS)-dependent target RNA cleavage.	0
NZ_CP015107.1\|WP_081078389.1\|3139675_3141340_-\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	gnl\|CDD\|236020	PRK07449, PRK07449, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated.	1.37894e-132
NZ_CP015107.1\|WP_060381850.1\|3135520_3136933_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	1.20612e-123
NZ_CP015107.1\|WP_063744069.1\|3124181_3125936_+\|hypothetical-protein	gnl\|CDD\|224771	COG1858, MauG, Cytochrome c peroxidase [Inorganic ion transport and metabolism].	1.69832e-63
NZ_CP015107.1\|WP_060381847.1\|3138337_3139171_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225543	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only].	1.40879e-79
NZ_CP015107.1\|WP_060381856.1\|3125968_3126505_-\|DUF1697-domain-containing-protein	gnl\|CDD\|377954	pfam08002, DUF1697, Protein of unknown function (DUF1697). This family contains many hypothetical bacterial proteins.	5.22528e-51
NZ_CP015107.1\|WP_063744067.1\|3116360_3117248_-\|EamA-family-transporter	gnl\|CDD\|225510	COG2962, RarD, Predicted permeases [General function prediction only].	5.45161e-29
NZ_CP015107.1\|WP_063744073.1\|3133641_3134490_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	8.19275e-74
NZ_CP015107.1\|WP_060381863.1\|3117331_3118987_-\|hypothetical-protein	gnl\|CDD\|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.6256e-36
NZ_CP015107.1\|WP_060381861.1\|3119993_3120539_-\|Smr/MutS-family-protein	gnl\|CDD\|376599	pfam01713, Smr, Smr domain. This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2. This domain exhibits nicking endonuclease activity that might have a role in mismatch repair or genetic recombination. It shows no significant double strand cleavage or exonuclease activity. The full-length human NEDD4-binding protein 2 also has the polynucleotide kinase activity.	1.32843e-08
NZ_CP015107.1\|WP_060381846.1\|3139249_3139591_-\|DUF2853-family-protein	gnl\|CDD\|378540	pfam11015, DUF2853, Protein of unknown function (DUF2853). This bacterial family of proteins has no known function.	5.10177e-61
NZ_CP015107.1\|WP_060381859.1\|3121044_3122289_-\|ornithine--oxo-acid-transaminase	gnl\|CDD\|273853	TIGR01885, Ornithine_aminotransferase, ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI\|PG1271), and the other from Staphylococcus aureus (OMNI\|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP\|P38021).	0
NZ_CP015107.1\|WP_081248778.1\|3120585_3120897_+\|DUF2752-domain-containing-protein	gnl\|CDD\|378499	pfam10825, DUF2752, Protein of unknown function (DUF2752). This family is conserved in bacteria. Many members are annotated as being putative membrane proteins.	4.24533e-11
NZ_CP015107.1\|WP_063744068.1\|3122549_3124001_+\|DUF839-domain-containing-protein	gnl\|CDD\|225752	COG3211, PhoX, Predicted phosphatase [General function prediction only].	9.25853e-08
NZ_CP015107.1\|WP_063744072.1\|3132750_3133587_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	1.49186e-72
NZ_CP015107.1\|WP_063744071.1\|3131847_3132696_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	9.63828e-73

>NZ_CP015107.1|WP_063744070.1|3126651_3130293_+|hypothetical-protein
MSSKNESYNKQKTFNHYKQEDKYFFGGFLNNADDNLRQVGKEFKTRINFNHNNNELASVFKDYFNKEKSVAKREHALNLLSNYFPVLERIQKHTNHNFEQTREIFELLLDTIKKLRDYYTHHYHKPITINPKIYDFLDDTLLDVLITIKKKKVKNDTSRELLKEKLRPELTQLKNQKREELIKKGKKLLEENLENAVFNHCLRPFLEENKTDDKQNKTVSLRKYRKSKPNEETSITLTQSGLVFLMSFFLHRKEFQVFTSGLEGFKAKVNTIKEEKISLNKNNIVYMITHWSYSYYNFKGLKHRIKTDQGVSTLEQNNTTHSLTNTNTKEALLTQIVDYLSKVPNEIYETLSEKQQKEFEEDINEYMRENPENEDSTFSSIVSHKVIRKRYENKFNYFAMRFLDEYAELPTLRFMVNFGDYIKDRQKKILESIQFDSERIIKKEIHLFEKLGLVTEYKKNVYLKETSNIDLSRFPLFPSPSYVMANNNIPFYIDSRSNNLDEYLNQKKKAQSQNRKRNLTFEKYNKEQSKDAIIAMLQKEIGVKDLQQRSTIGLLSCNELPSMLYEVIVKDIKGAELENKIAQKIREQYQSIRDFTLNSPQKDNIPTTLIKTISTDTSVTFENQPIDIPRLKNAIQKELALTQEKLLNVKQHEIEVNNYNRNKNTYKFKNQPKDKVDDNKLQRKYVFYRNEIGQEANWLASDLIHFMKNKSLWKGYMHNELQSFLAFFEDKKNDCIALLETVFNLKEDCILTKDLKNLFLKHGNFIDFYKEYLKLKEDFLNTESTFLENGFIGLPPKILKKELSKRLNYIFIVFQKRQFIIKELEEKKNNLYADAINLSRGIFDEKPTMIPFKKPNPDEFASWFVASYQYNNYQSFYELTPDKIENDKKKKYKNLRAINKVKIQDYYLKLMVDTLYQDLFNQPLDKSLSDFYVSKTDREKIKADAKAYQKRNDSFLWNKVIHLSLQNNRITANPKLKDIGKYKRALQDEKIATLLTYDDRTWTYALQKPEKENENDYKELHYTALNMELQEYEKVRSKKLLKQVQELEKQILDKFYDFSNNATHPEDLEIEDKKGKRHPNFKLYITKALLKNESEIINLENIDIEILIKYYDYNTEKLKEKIKNMDEDEKAKIVNTKENYNKITNVLIKKALVLIIIRNKMAHNQYPPKFIYDLATRFVPKKEEEYFACYFNRVFETITTELWENKKKAKEIV
>NZ_CP015107.1|WP_060381856.1|3125968_3126505_-|DUF1697-domain-containing-protein
MKKHLALLRGINVSGHNMIKMDDLKVLLERMGFENVVTYIQSGNVFFECEEANGPSVGFKIKQEIFKEWGYEVPVMVLGKEDLEGALSNNPYLKEKEADPSKIYFAFLNKELNESAIHDLKISQVKPDEATVDKNRIYLKYINGAGKTRMDNKYIEKKLNVLSTIRNFNTVTKLLEMF
>NZ_CP015107.1|WP_063744069.1|3124181_3125936_+|hypothetical-protein
MKNIVFLILFICSISCKKNQYQSIQSIQNTQNLLKLNFKYFTNEINTFEEITKKNVTADQLRNQFQKTRLAFKKSEEFIAYYFPSSFIKINGAPIDENDLNETNRKIEYATGFQKIEELIFRPSINKILLLENIEILKGHLVVLTQQINNLQLNDSNIFEIQKLQLLRVLSLGITGFDSALALHSLPEAQSSLKGIQEVINGFQFDKSFNTAISKAISYLKKNNSFNTFDRAVFITQYANPIFQNIFRIQQKLHIKNNPFLTAINFNKKTPFETEAYDPNYFAPFYNKNPSKLQIHLGKQLFFDKILSGNNQINCASCHIPNQAYADHKTKAVANKTSRNTPTLLNAGLQNTQFADNRIRYLEDQAKAVINNPDEMHGSFTLALKKLNKNQMYRNLFHKVFPSSKNITEENLLQSIASFVRSLSKLNSKFDEYLRGKASLTIQEKKGFNLFMGKAKCATCHFFPLFNGSIPPLYQKTESEILGVPSRIHSKQIDPDLGEYHITKAPLKKYAFKTPTVRNASITFPYMHNGVFNTLEEVINFYNKGGGKGNGIIVEHQTLAQNPLLLSKEEMQNIIRFIQTLNNP
>NZ_CP015107.1|WP_063744068.1|3122549_3124001_+|DUF839-domain-containing-protein
MNLKNMFFTSIIISVIACNKEENTNTDSAVENTRIEFKNHSKTPALIKTMPEFSSIQTYSLFSSEDQFINSPSFVFGGSADGSGLIKNPDDSFTFLVNNEDNFSVSKITFDKTFKPIAGEYVLNSKGAGTRLCSATLVMPEIHGFGPFFLTCGESDSESLVHKIAPTDTHINASIPKTIPAFGRWSAENAVPLSKNAYAGQTIIMIGDDDNKDYGGQLVMYKSTTGDLNNGKVYVIKRTDNESIETKMTENNTYDIEFVEITNAKTNTGLQNNQAAQAANAIIFGRVEDIDWNKTTGKEREIYFNVTGQNNTGVNANNTRTKYGRLYRLELDPSNPLKGKLTVMLDGDNKSGLAKTFQNIDNICVTKNYVYLQEDANGYGDESHDAYIYQYDIAKKTLKVVFELDHRRNDTSDKYLGAKSPKGSWEYGALLDISDIIGKDNTFMLSIQPHSWEKEDFKGKDGGGLRPDEKQGSQVILINGLPR
>NZ_CP015107.1|WP_060381859.1|3121044_3122289_-|ornithine--oxo-acid-transaminase
MSVLEKLSSAEAIALEDKHGAHNYHPLPVVLSRGEGVYVWDVEGKKYYDFLSAYSAVNQGHCHPRIVDAMVKQAQTLTLTSRAFYNDKLGVYERYVTNYFGFDKVLPMNTGAEAVETALKLCRKWAYERKGINENEAQIIVCENNFHGRTTTIISFSNDENARKNFGPYTAGFIKIAYDDLEALEQAITSSPNVAGFLVEPIQGEAGVYVPSEGYLAKAKALCEKHNVLFIADEVQTGIARTGKLLAVHHESVQPDILILGKALSGGAYPVSAVLANDGIMNVIKPGQHGSTFGGNPVAAAVAIEALEVVKEEQLAENAERLGKIFREELAKFIETSNVATLVRGKGLLNAVVINDTEESDTAWNICVKLAEKGLLAKPTHGNIIRFAPPLVMNEEQLRDCVAIIIDTLKAFEK
>NZ_CP015107.1|WP_081248778.1|3120585_3120897_+|DUF2752-domain-containing-protein
MNFVFTWVEKIIMNDFMIPCLFKMVFKVDCLGCGAQRAFILLLKGEFKNAFFMYPPLFSVLPYILLITGQYYKAFSFSNKYIRSLGYINLIIMFISYFIKHLT
>NZ_CP015107.1|WP_060381861.1|3119993_3120539_-|Smr/MutS-family-protein
MFSKGDKVSVLDDNINGVVIKIATDQVWIETEEGFELPFKNNELILIGESGMDFSTTNFYAIKKEKEISKPKNFIKEKKSKKDETILEVDLHIEKLVQSTKGMNNYDILNIQIETAQRQLDFAIKNKIQKVVLIHGVGEGILKAELDFLLNKYSYISFQEASFQKYGFGATEVYINQKNFL
>NZ_CP015107.1|WP_060381862.1|3119071_3119992_+|hypothetical-protein
MKNFWFLLTSLVLLNSCDDGNIIEETFNFSSITTQKCNNTNTLYKINDREALIFITPETSFPNEEGTKTYTIGTTHNLVYKKFYSTISSNEICSTGSVPIAEQWTVSGGTIEITSNKIISTNDPSKIVGYNHKILFKNITFNTPNKQLVYDQYDFGNYTTDLIDLKFDYKNAVMQNCSGNNLIFKYNNNNALLLDIDPNLYKHQTVGTKTALINNVNKISYRVYNGNLNSNFFCQSIPPTSPSLTGEWIAQNGTIDNDGIIVIETTQQTSTTYRHVIKLRKVFFKNGIKTYSPNPNGDYEFGEIIN
>NZ_CP015107.1|WP_060381863.1|3117331_3118987_-|hypothetical-protein
MNSQVTKTNYPALYTLVTVFFFWGFIAAGNSIFIPFCKNYFSLDQFQSQLIDFAFYTAYYLGALLLFAFGNAKGKDIVGSWGHKKSIIYGLLFSALGAGAMILAVKGSIYAGMLIGLFIVALGFSLQQTAANPFAILLGDPKTGASRVNLGGGINSLGTTIGPIIVALALFGTTATVSDDQIKHLELDKVIFLYVCVGLLFVGSATLFYFSKKVPSGISNEPMEKANKALMTLVVMTILLAACFTFIFKTYQNVNDLNSSDLLDLNKYRMNWLIGALVVVLGGIFYAYTSAKKNPEGWGAMQYPQLVLGMLAIFVYVGVEVSIGSNLGELLKLPEFGSLQSSDIAPYISMYWGGLMIGRWAGAISVFDLKVIKKIIALIVVPLIAFGIVLGANILSGKDMKPLYFYVLCVLLQIIAMFLSKDKPARTLMIFALFGLMAMLIGLFSTGIIAVYAFLAGGLACSIMWPAIFSLSIFGLGKYTSQGSAFLIMMILGGGIIPPIQGKISDLIGIHNSYIVAVLCFAYLTFFAILVKNILKKQNIDVDSIEVKEGH
>NZ_CP015107.1|WP_063744067.1|3116360_3117248_-|EamA-family-transporter
MNLNKYFVAAFSSFFIWGFFSLAIKKLHAYPSLDILFYRVFYATFLLLLINLLFRKHVVFNNFKTFNELSIKIKKKTIFLTVLGGLLLVLNWFLFMYCVNHVSIQSASFAYLICPIITTILAYFILKENLNKGQWIAVGLFIISCGILSYGHIEDLIYSLIIASTFAMYLISQRKNNQFDRFVVLTIQLIISSLLLLPFYFFYKSETPIVLLFWEVMTLIVILFTILPLFLNLYALRGVDSKTVGVLMYINPLINFFLALFYFREEINLIQLSAYLLIIVAIILFNINYFVKKEG
>NZ_CP015107.1|WP_063744071.1|3131847_3132696_+|Rpn-family-recombination-promoting-nuclease/putative-transposase
MKAKYINPFTDFGFKKIFGEEASKNLLIDFLNTLLPEHDQIKELSFKNTEQLGITDLDRKAIYDIYCQNEKGEKFIVELQKAKQNFFKERTIYYATFPIREQAEKGEWNYNLKSVYCIGILDFTFDDYESEPEKSEVVHTIKLKNQNGKVFYDKLTYIYLEMPNFKKQETDLNSRLDKWLYFIKNLEDFQNIPTIFKDEVFTQAFEKAELANFGQWELDKYESSLKVYRDLKSIIDTAFDDDKEEGKIQGKIEIAKSLKKLGISIEIIIQSTGLTQEEINKL
>NZ_CP015107.1|WP_063744072.1|3132750_3133587_+|Rpn-family-recombination-promoting-nuclease/putative-transposase
MKAKYINPFTDFGFKKIFGEEASKNLLIDFLNTLLPEHDQIKELSFKNTEQLGITDLDRKAIYDIYCQNEKGEKFIVELQKAKQNYFKERTIYYSTFPIREQAEKGEWNYNLKAVYCVGVLDFTFDDYESEPEKSEVVHTIKLKNQNGKVFYDKLTYIYLEMPNFKKQETDLNSRLDKWLYFIKNLEDFQNIPTIFKDEVFTQAFEKAELANFGQWELDKYENSLKVYRDLKSIIDTAFDDGKIEGKIETAKSLKKLGISIEIIIQSTGLTQEEINKL
>NZ_CP015107.1|WP_063744073.1|3133641_3134490_+|Rpn-family-recombination-promoting-nuclease/putative-transposase
MKAKYINPFTDFGFKKIFGEEASKNLLIDFLNTLLPEHDQIKELSFKNTEQLGITDLDRKAIYDIYCENEKGEKFIVELQKAKQNFFKERTIYYATFPIREQAEKGEWNYNLKSVYCIGILDFTFDDYESEPEKSEVVHTIKLKNQNGKVFYDKLTYIYLEMPNFKKQETDLNSRLDKWLYFIKNLEDFQNIPTIFKDEVFTQAFEKAELANFGQWELDKYESSLKVYRDLKSIIDTAFDDGKEEGKIQGKIEIAKQAKTMGLSIPDIIKLTGLSKKEINEL
>NZ_CP015107.1|WP_060381851.1|3134677_3135379_+|hypothetical-protein
MGFFDIFFKKKQAVTNLENSKQTQDVQLNKENTFVSTVDHLEHKIIRSLTNEQREAIHKSTILLQAGQLYMHYWTDHLVCKDRNDPEWQNKVMFFWKAEEPFPKKSLPPIFETFKTKHFLFVGDTSKISLQIGQAIPWFGMPGLGQKHSCEMNGQKITIPELNKIGLVEYIEPVELKDDNLDILSDKDNYFFLIDERITPFQNGNFLLNGIPIPIDMAYSIGGIHIIKKIDLE
>NZ_CP015107.1|WP_060381850.1|3135520_3136933_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MGRKKDKQVVFENVKVLDAGAKGVCVAKAPEGQVIFLSNVVPGDVVDIQTFKKRKSYYEGKAFKFHSYSEHRVDPVCEHSGVCGGCKWQNMNYNQQLFYKHQEVENNLKRIGKIELPVFEPILGSEKQFFYRNKMEFGFSSSRWMTPEEINSGEELDNKNAVGFHIPKMWDKILNINKCHLQQDPSNDIRNEIRRFANENDLTFFNPREHGGLLRTLMIRTASTGEIMVVIQFFDHNQKQIEMVMNFLAERFPEITSLQYVVNQKANDTLYDQEIILFKGRDYILEEMEGLQFSINAKSFYQTNSEQAYELYSITRDFAGLTGNELVYDLYTGTGTIAQFVSKKAKKVIGVEAVPEAISDAKINAERNNISNCEFFVGDMKNVFNDDFIATNGHPDIIITDPPRDGMHADVVEQILKIAPKKVVYVSCNSATQARDLALMDKMYKVTRVRPVDMFPQTHHVENVVLLEKR
>NZ_CP015107.1|WP_060381849.1|3136994_3137489_+|hypothetical-protein
MKKIFLGLFVILSTLPFLNCEPDDVCPQGTPTTPRMIVQFFDNNNPTNPKTITDLKVTAEGMSSSLDFASSNKIELPLKVNNNQVRYTFQINSKNSTLAKEDQITLNYSRNDVYISRACGYKTEFTLNTLNGATLTTPKNWIQEVTIQKTSIVNENETHLKIFF
>NZ_CP015107.1|WP_060381848.1|3137460_3138165_+|hypothetical-protein
MKHISKFSFSLLLTIYTFTISQAQEKTNDTIKKTERYGIRIGTDLSKITRSIFDKNYKGLELVGDYRIGQKMYLATEIGNEKKITEDKRLNFTTTGSYLKVGFDYNFYQNWLNMEDMVHLGLRYGFSSFSQALTSYKIYNTTGYFPQADAVIANQNYKDLTAHWTEVVAGIKAKIFNNFYAGFSLRINYLLSEKKPENFNNLYIPGFNRTYDGQFGAGWNYSITYFIPLYKKKG
>NZ_CP015107.1|WP_060381847.1|3138337_3139171_-|GntR-family-transcriptional-regulator
MIEIGKYNTLKIARNTNVGLYLTDGEKDVLLPNKYVPKEYEIEADIEVFIYLDHEERPVATTLEPYIFLNEFSLLRVNYVNKFGAFMDWGLEKDLFVPFKEQARPMEEGKRYLVYMYLDKQTNRLVGSSRLNQFLNNQNLNVEKGEEVDLIVSHISDTGINVIINEKHKGLIYKDQIFEDLRTGDRIIGYIKNIRPDGKIDISRQPLGFERIDASAQKILEELKAGRGMLKLHDNSSPEDIKTILQMSKKTFKKAIGTLYREKIIELRPDGIYLLKS
>NZ_CP015107.1|WP_060381846.1|3139249_3139591_-|DUF2853-family-protein
MSKRDELIEKYATDLKEKCGVTPDMELLTKVVIGCGPSIYNQDSATVSGSQQSELDTVKNNFLIKKLGLSDNPELDAAIDSVMERYGRSNRNKYRAVVYYLLTLHFKKESIYN
>NZ_CP015107.1|WP_081078389.1|3139675_3141340_-|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase
MKPTAIYPKIPLAQSIIEMCKKKGLKHIVISPGSRNAPLTIGFSNQPEFNCYSIVDERCAGFFALGLAQQLQEPVALICTSGSALLNYYPAISEAFYSQIPLVVISADRPIDKIDIGDGQTIRQANVFANHILYNANLQEAASLENDRLIQEALFFSVSQKGPVHINAPFEEPLYETISEPTIEPTWFNFEKQNEPLETLDFFAEEWSQAQKKIILIGENHSDSIDTKYLDILARDPSVIVMTEVTSNLHHENFITNIDTIITPFSEKEFERYKPEILLTLGGMIVSKRIKAFFRKYQPNAHWHIDPLRAYNTYDCLNYHFKEKPNTFFERFLKLTSYKESSFQKELLAIRFQRKIAHNNYLKELIFSDLKVFQIITELLPKNIQLQISNSSAIRYAQLFPIDPSISVYCNRGTSGIEGSTTTAIGAAVASKKTTYLITGDISFFYDSNALWNHYIPNDFKIIIINNGGGGIFRILPGHQENETFNTFFETSHNLTAEYLAKMYGLDYFKAKEEKELRTNWAFFSSLNKPAIYEIFTPEKQNNEVLLQYFKKLK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP015107_5	5.1\|3130468\|28\|NZ_CP015107\|PILER-CR	3130468-3130495	28	NZ_CP015107.1	808750-808777	0	1.0
NZ_CP015107_5	5.8\|3130467\|29\|NZ_CP015107\|CRT	3130467-3130495	29	NZ_CP015107.1	808750-808778	0	1.0

1. spacer 5.1|3130468|28|NZ_CP015107|PILER-CR matches to position: 808750-808777, mismatch: 0, identity: 1.0

ttaaagtcacctcaaatgaggtggcttt	CRISPR spacer
ttaaagtcacctcaaatgaggtggcttt	Protospacer
****************************

2. spacer 5.8|3130467|29|NZ_CP015107|CRT matches to position: 808750-808778, mismatch: 0, identity: 1.0

ttaaagtcacctcaaatgaggtggctttt	CRISPR spacer
ttaaagtcacctcaaatgaggtggctttt	Protospacer
*****************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP015107_1	1.1\|944853\|30\|NZ_CP015107\|CRISPRCasFinder,CRT	944853-944882	30	AP014318	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S32-C66, * SEQUENCING IN PROGRESS *	8380-8409	4	0.867
NZ_CP015107_1	1.8\|945314\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945314-945343	30	MK448486	Streptococcus satellite phage Javan418, complete genome	6849-6878	5	0.833
NZ_CP015107_1	1.8\|945314\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945314-945343	30	NZ_CP016317	Bacillus cereus strain M3 plasmid pBCM301, complete sequence	190100-190129	5	0.833
NZ_CP015107_1	1.12\|945578\|29\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945578-945606	29	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	155616-155644	5	0.828
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	MN693136	Marine virus AFVG_25M110, complete genome	23377-23406	5	0.833
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	AP013819	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15-MedDCM-OCT-S45-C267, * SEQUENCING IN PROGRESS *	3225-3254	5	0.833
NZ_CP015107_1	1.21\|946170\|30\|NZ_CP015107\|CRISPRCasFinder,CRT	946170-946199	30	KR709302	Staphylococcus phage 55-2, complete genome	4865-4894	5	0.833
NZ_CP015107_1	1.21\|946170\|30\|NZ_CP015107\|CRISPRCasFinder,CRT	946170-946199	30	AY954962	Bacteriophage 71, complete genome	32015-32044	5	0.833
NZ_CP015107_1	1.21\|946170\|30\|NZ_CP015107\|CRISPRCasFinder,CRT	946170-946199	30	AY954963	Bacteriophage 55, complete genome	31977-32006	5	0.833
NZ_CP015107_1	1.21\|946170\|30\|NZ_CP015107\|CRISPRCasFinder,CRT	946170-946199	30	NC_007059	Staphylococcus phage 71, complete genome	32015-32044	5	0.833
NZ_CP015107_1	1.21\|946170\|30\|NZ_CP015107\|CRISPRCasFinder,CRT	946170-946199	30	KR709303	Staphylococcus phage 55-3, complete genome	4865-4894	5	0.833
NZ_CP015107_1	1.21\|946170\|30\|NZ_CP015107\|CRISPRCasFinder,CRT	946170-946199	30	NC_007060	Staphylococcus phage 55, complete genome	31977-32006	5	0.833
NZ_CP015107_1	1.21\|946170\|30\|NZ_CP015107\|CRISPRCasFinder,CRT	946170-946199	30	MN904510	Staphylococcus phage vB_SauS-SAP27, complete genome	17053-17082	5	0.833
NZ_CP015107_1	1.1\|944853\|30\|NZ_CP015107\|CRISPRCasFinder,CRT	944853-944882	30	NZ_CP010112	Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence	225116-225145	6	0.8
NZ_CP015107_1	1.2\|944919\|30\|NZ_CP015107\|CRISPRCasFinder,CRT	944919-944948	30	KT997847	Uncultured phage_Deep1-GF2-KM23-C739 genomic sequence	10882-10911	6	0.8
NZ_CP015107_1	1.3\|944985\|29\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	944985-945013	29	MN693191	Marine virus AFVG_25M64, complete genome	39379-39407	6	0.793
NZ_CP015107_1	1.3\|944985\|29\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	944985-945013	29	NZ_CP017464	Staphylococcus pasteuri strain JS7 plasmid pSNJS701, complete sequence	83245-83273	6	0.793
NZ_CP015107_1	1.3\|944985\|29\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	944985-945013	29	NZ_CP017464	Staphylococcus pasteuri strain JS7 plasmid pSNJS701, complete sequence	63742-63770	6	0.793
NZ_CP015107_1	1.3\|944985\|29\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	944985-945013	29	NZ_CP031281	Staphylococcus pasteuri strain 3C plasmid unnamed1, complete sequence	82631-82659	6	0.793
NZ_CP015107_1	1.3\|944985\|29\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	944985-945013	29	NZ_CP031281	Staphylococcus pasteuri strain 3C plasmid unnamed1, complete sequence	62691-62719	6	0.793
NZ_CP015107_1	1.3\|944985\|29\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	944985-945013	29	MN694755	Marine virus AFVG_250M800, complete genome	9556-9584	6	0.793
NZ_CP015107_1	1.3\|944985\|29\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	944985-945013	29	MN693315	Marine virus AFVG_25M406, complete genome	2169-2197	6	0.793
NZ_CP015107_1	1.3\|944985\|29\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	944985-945013	29	KJ019082	Synechococcus phage ACG-2014i isolate Syn7803US120, complete genome	68120-68148	6	0.793
NZ_CP015107_1	1.3\|944985\|29\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	944985-945013	29	MN694134	Marine virus AFVG_250M799, complete genome	9564-9592	6	0.793
NZ_CP015107_1	1.3\|944985\|29\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	944985-945013	29	MN693451	Marine virus AFVG_25M222, complete genome	32686-32714	6	0.793
NZ_CP015107_1	1.3\|944985\|29\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	944985-945013	29	MN693347	Marine virus AFVG_25M221, complete genome	33164-33192	6	0.793
NZ_CP015107_1	1.3\|944985\|29\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	944985-945013	29	MN693261	Marine virus AFVG_25M255, complete genome	33152-33180	6	0.793
NZ_CP015107_1	1.3\|944985\|29\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	944985-945013	29	MN693365	Marine virus AFVG_25M220, complete genome	32871-32899	6	0.793
NZ_CP015107_1	1.6\|945182\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945182-945211	30	NZ_CP011054	Halomonas sp. KO116 plasmid unnamed2, complete sequence	59283-59312	6	0.8
NZ_CP015107_1	1.8\|945314\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945314-945343	30	NZ_CP040343	Bacillus cereus strain DLOU-Weihai plasmid unnamed1, complete sequence	66871-66900	6	0.8
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	AP014317	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S32-C52, * SEQUENCING IN PROGRESS *	32841-32870	6	0.8
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	NC_013516	Streptobacillus moniliformis DSM 12112 plasmid pSMON01, complete sequence	3906-3935	6	0.8
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	NZ_CP027399	Streptobacillus moniliformis strain FDAARGOS_310 plasmid unnamed, complete sequence	8400-8429	6	0.8
NZ_CP015107_1	1.3\|944985\|29\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	944985-945013	29	NZ_CP016746	Lactococcus lactis subsp. cremoris strain JM1 plasmid pMPJM1, complete sequence	180910-180938	7	0.759
NZ_CP015107_1	1.3\|944985\|29\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	944985-945013	29	NZ_CP016745	Lactococcus lactis subsp. cremoris strain JM2 plasmid pMPJM2, complete sequence	73115-73143	7	0.759
NZ_CP015107_1	1.9\|945380\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945380-945409	30	MT909815	Enterococcus phage iF6, complete genome	41137-41166	7	0.767
NZ_CP015107_1	1.11\|945512\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945512-945541	30	MG649967	Vibrio virus Thalassa, complete genome	79508-79537	7	0.767
NZ_CP015107_1	1.11\|945512\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945512-945541	30	MT460515	Vibrio phage Cody, complete genome	78920-78949	7	0.767
NZ_CP015107_1	1.11\|945512\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945512-945541	30	MK895508	Vibrio phage Brizo, complete genome	75138-75167	7	0.767
NZ_CP015107_1	1.11\|945512\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945512-945541	30	NC_042095	Vibrio phage Thalassa, complete genome	79508-79537	7	0.767
NZ_CP015107_1	1.11\|945512\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945512-945541	30	MT460517	Vibrio phage Athena, complete genome	78884-78913	7	0.767
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	NC_006872	Clostridium perfringens plasmid pBCNF5603 DNA, complete sequence	18766-18795	7	0.767
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	NZ_CP013044	Clostridium perfringens strain JP55 plasmid pJFP55J, complete sequence	15204-15233	7	0.767
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	NZ_MG205641	Paeniclostridium sordellii strain 7508-A plasmid pCS1-7, complete sequence	45171-45200	7	0.767
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	NZ_MG205643	Paeniclostridium sordellii strain S0804018 plasmid pCS1-5, complete sequence	38123-38152	7	0.767
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	NZ_MG205642	Paeniclostridium sordellii strain 7543-A plasmid pCS1-6, complete sequence	45171-45200	7	0.767
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	NZ_LR214980	Mycoplasma cynos strain NCTC10142 plasmid 7	2937-2966	7	0.767
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	NZ_LR214980	Mycoplasma cynos strain NCTC10142 plasmid 7	9450-9479	7	0.767
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	42874-42903	7	0.767
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	213033-213062	7	0.767
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	399960-399989	7	0.767
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	950168-950197	7	0.767
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	MK250021	Prevotella phage Lak-B2, complete genome	37617-37646	7	0.767
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	MK250024	Prevotella phage Lak-B5, complete genome	36700-36729	7	0.767
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	MK250028	Prevotella phage Lak-B9, complete genome	37628-37657	7	0.767
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	MK250023	Prevotella phage Lak-B4, complete genome	37649-37678	7	0.767
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	MK250025	Prevotella phage Lak-B6, complete genome	36684-36713	7	0.767
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	MK250022	Prevotella phage Lak-B3, complete genome	36699-36728	7	0.767
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	MK250027	Prevotella phage Lak-B8, complete genome	37649-37678	7	0.767
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	MK250026	Prevotella phage Lak-B7, complete genome	37649-37678	7	0.767
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	KU686205	Synechococcus phage S-CAM9 isolate 0908SB82, complete genome	108206-108235	7	0.767
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	MK250020	Prevotella phage Lak-B1, complete genome	37608-37637	7	0.767
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	NZ_CP009368	Bacillus cereus strain FM1 plasmid unnamed, complete sequence	329935-329964	7	0.767
NZ_CP015107_1	1.20\|946105\|29\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	946105-946133	29	NZ_CP022091	Staphylococcus saprophyticus strain FDAARGOS_355 plasmid unnamed1, complete sequence	34431-34459	7	0.759
NZ_CP015107_1	1.20\|946105\|29\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	946105-946133	29	NZ_CP035296	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305 plasmid unnamed2, complete sequence	29690-29718	7	0.759
NZ_CP015107_1	1.20\|946105\|29\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	946105-946133	29	NZ_CP054577	Staphylococcus saprophyticus strain UTI-050 plasmid pUTI-050-2, complete sequence	20904-20932	7	0.759
NZ_CP015107_1	1.20\|946105\|29\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	946105-946133	29	NC_007351	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 plasmid pSSP1, complete sequence	32750-32778	7	0.759
NZ_CP015107_1	1.21\|946170\|30\|NZ_CP015107\|CRISPRCasFinder,CRT	946170-946199	30	MH598801	Pelagibacter phage HTVC200P, complete genome	5555-5584	7	0.767
NZ_CP015107_5	5.2\|3130534\|28\|NZ_CP015107\|PILER-CR	3130534-3130561	28	NZ_CP037921	Hymenobacter sp. 17J36-26 plasmid unnamed1, complete sequence	115944-115971	7	0.75
NZ_CP015107_5	5.9\|3130533\|29\|NZ_CP015107\|CRT	3130533-3130561	29	NZ_CP037921	Hymenobacter sp. 17J36-26 plasmid unnamed1, complete sequence	115943-115971	7	0.759
NZ_CP015107_5	5.11\|3130665\|29\|NZ_CP015107\|CRT	3130665-3130693	29	NZ_CP011152	Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence	501698-501726	7	0.759
NZ_CP015107_5	5.11\|3130665\|29\|NZ_CP015107\|CRT	3130665-3130693	29	NZ_CP011154	Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence	45189-45217	7	0.759
NZ_CP015107_1	1.1\|944853\|30\|NZ_CP015107\|CRISPRCasFinder,CRT	944853-944882	30	NZ_LR215017	Mycoplasma canis strain NCTC10146 plasmid 8	1512-1541	8	0.733
NZ_CP015107_1	1.1\|944853\|30\|NZ_CP015107\|CRISPRCasFinder,CRT	944853-944882	30	NZ_LR215017	Mycoplasma canis strain NCTC10146 plasmid 8	8548-8577	8	0.733
NZ_CP015107_1	1.3\|944985\|29\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	944985-945013	29	NZ_CP032530	Bacillus megaterium NCT-2 plasmid pNCT2_2, complete sequence	33935-33963	8	0.724
NZ_CP015107_1	1.6\|945182\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945182-945211	30	NC_048173	Erwinia phage Derbicus, complete genome	98774-98803	8	0.733
NZ_CP015107_1	1.6\|945182\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945182-945211	30	NC_031007	Erwinia phage vB_EamM_EarlPhillipIV, complete genome	98756-98785	8	0.733
NZ_CP015107_1	1.7\|945248\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945248-945277	30	MT074157	Bacteroides phage SJC20, complete genome	13466-13495	8	0.733
NZ_CP015107_1	1.7\|945248\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945248-945277	30	MT074143	Bacteroides phage HNL05, complete genome	13478-13507	8	0.733
NZ_CP015107_1	1.7\|945248\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945248-945277	30	MT074160	Bacteroides phage SJC25, complete genome	13500-13529	8	0.733
NZ_CP015107_1	1.7\|945248\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945248-945277	30	MT074144	Bacteroides phage HNL35, complete genome	13478-13507	8	0.733
NZ_CP015107_1	1.8\|945314\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945314-945343	30	NZ_CP032091	Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence	272532-272561	8	0.733
NZ_CP015107_1	1.9\|945380\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945380-945409	30	MK764441	Flavobacterium phage FPSV-F12, complete genome	50605-50634	8	0.733
NZ_CP015107_1	1.9\|945380\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945380-945409	30	KU599886	Flavobacterium phage Fpv20, complete genome	55350-55379	8	0.733
NZ_CP015107_1	1.9\|945380\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945380-945409	30	NC_031931	Flavobacterium phage Fpv2, complete genome	55171-55200	8	0.733
NZ_CP015107_1	1.9\|945380\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945380-945409	30	KT876726	Flavobacterium phage FpV21, complete genome	55162-55191	8	0.733
NZ_CP015107_1	1.9\|945380\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945380-945409	30	KU599877	Flavobacterium phage Fpv1, complete genome	55196-55225	8	0.733
NZ_CP015107_1	1.13\|945643\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945643-945672	30	NZ_LR134399	Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence	68057-68086	8	0.733
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	NZ_CP047429	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-1, complete sequence	119414-119443	8	0.733
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	NZ_CP047438	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-1, complete sequence	33941-33970	8	0.733
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	NZ_CP047444	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-7	35306-35335	8	0.733
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	NZ_AP018163	Endosymbiont of Sipalinus gigas isolate NARSGI1 plasmid pSgi1, complete sequence	197-226	8	0.733
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	NZ_CP018142	Acinetobacter larvae strain BRTC-1 plasmid pRW2, complete sequence	412-441	8	0.733
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	GU949551	Clostridium phage phiCD6356, complete genome	7049-7078	8	0.733
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	NZ_CP039041	Piscirickettsia salmonis strain Psal-072 plasmid unnamed1, complete sequence	191792-191821	8	0.733
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	NC_013940	Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence	155754-155783	8	0.733
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	MN693323	Marine virus AFVG_25M87, complete genome	7652-7681	8	0.733
NZ_CP015107_1	1.20\|946105\|29\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	946105-946133	29	HQ633071	Synechococcus phage S-SKS1 genomic sequence	139404-139432	8	0.724
NZ_CP015107_1	1.1\|944853\|30\|NZ_CP015107\|CRISPRCasFinder,CRT	944853-944882	30	MN693190	Marine virus AFVG_25M52, complete genome	19710-19739	9	0.7
NZ_CP015107_1	1.1\|944853\|30\|NZ_CP015107\|CRISPRCasFinder,CRT	944853-944882	30	MN693247	Marine virus AFVG_25M51, complete genome	19787-19816	9	0.7
NZ_CP015107_1	1.1\|944853\|30\|NZ_CP015107\|CRISPRCasFinder,CRT	944853-944882	30	NZ_CP019972	Enterococcus faecium isolate 2014-VREF-114 plasmid p114-2 sequence	74064-74093	9	0.7
NZ_CP015107_1	1.10\|945446\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945446-945475	30	CP054909	Pantoea ananatis strain FDAARGOS_680 plasmid unnamed1, complete sequence	24843-24872	9	0.7
NZ_CP015107_1	1.12\|945578\|29\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945578-945606	29	MK554696	Fusobacterium phage Fnu1, complete genome	45842-45870	9	0.69
NZ_CP015107_1	1.12\|945578\|29\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945578-945606	29	MN830253	Lactobacillus phage JNU_P5, complete genome	37852-37880	9	0.69
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	NZ_CP010578	Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB232, complete sequence	197028-197057	9	0.7
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	NZ_CP013709	Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence	50354-50383	9	0.7
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	NZ_CP013682	Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence	27125-27154	9	0.7
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	NZ_CP013295	Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence	37841-37870	9	0.7
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	MT724048	Staphylococcus phage SAP3, partial genome	22570-22599	9	0.7
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	NZ_CP010582	Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB51, complete sequence	13723-13752	9	0.7
NZ_CP015107_1	1.16\|945841\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	945841-945870	30	HQ633071	Synechococcus phage S-SKS1 genomic sequence	133887-133916	9	0.7
NZ_CP015107_1	1.19\|946039\|30\|NZ_CP015107\|CRISPRCasFinder,CRT,PILER-CR	946039-946068	30	NZ_CP045339	Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence	1003940-1003969	9	0.7

1. spacer 1.1|944853|30|NZ_CP015107|CRISPRCasFinder,CRT matches to AP014318 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S32-C66, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 4, identity: 0.867

aatactttatacaatcaattaaaaagcgat	CRISPR spacer
aaacctttatacaatcaattaaaaaaggat	Protospacer
**  *********************. ***

2. spacer 1.8|945314|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MK448486 (Streptococcus satellite phage Javan418, complete genome) position: , mismatch: 5, identity: 0.833

ttttacatttattacattaacgataagcga	CRISPR spacer
ttttacatttattacattaaaaataaaata	Protospacer
******************** .****.  *

3. spacer 1.8|945314|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016317 (Bacillus cereus strain M3 plasmid pBCM301, complete sequence) position: , mismatch: 5, identity: 0.833

ttttacatttattacattaacgataagcga	CRISPR spacer
ttttacatctattacattaacgaattgcaa	Protospacer
********.**************   **.*

4. spacer 1.12|945578|29|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 5, identity: 0.828

cgcaccag--catcaaaaaattttgattatg	CRISPR spacer
--aactagttcatcaaaaaattttgactatg	Protospacer
   **.**  ****************.****

5. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MN693136 (Marine virus AFVG_25M110, complete genome) position: , mismatch: 5, identity: 0.833

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
atatagaaaaatataatttagtaaaagttt	Protospacer
* .* .***** ******************

6. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to AP013819 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15-MedDCM-OCT-S45-C267, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 5, identity: 0.833

aggttaaaaaaaataatttagtaaaagttt---	CRISPR spacer
aggttaaaaaaattaatttatt---agtttaaa	Protospacer
************ ******* *   *****

7. spacer 1.21|946170|30|NZ_CP015107|CRISPRCasFinder,CRT matches to KR709302 (Staphylococcus phage 55-2, complete genome) position: , mismatch: 5, identity: 0.833

tcatttgaatttgaaaaaatgggcatttga	CRISPR spacer
tcatttgaatttgaaaaactggttaataga	Protospacer
****************** *** .* * **

8. spacer 1.21|946170|30|NZ_CP015107|CRISPRCasFinder,CRT matches to AY954962 (Bacteriophage 71, complete genome) position: , mismatch: 5, identity: 0.833

tcatttgaatttgaaaaaatgggcatttga	CRISPR spacer
tcatttgaatttgaaaaactggttaataga	Protospacer
****************** *** .* * **

9. spacer 1.21|946170|30|NZ_CP015107|CRISPRCasFinder,CRT matches to AY954963 (Bacteriophage 55, complete genome) position: , mismatch: 5, identity: 0.833

tcatttgaatttgaaaaaatgggcatttga	CRISPR spacer
tcatttgaatttgaaaaactggttaataga	Protospacer
****************** *** .* * **

10. spacer 1.21|946170|30|NZ_CP015107|CRISPRCasFinder,CRT matches to NC_007059 (Staphylococcus phage 71, complete genome) position: , mismatch: 5, identity: 0.833

tcatttgaatttgaaaaaatgggcatttga	CRISPR spacer
tcatttgaatttgaaaaactggttaataga	Protospacer
****************** *** .* * **

11. spacer 1.21|946170|30|NZ_CP015107|CRISPRCasFinder,CRT matches to KR709303 (Staphylococcus phage 55-3, complete genome) position: , mismatch: 5, identity: 0.833

tcatttgaatttgaaaaaatgggcatttga	CRISPR spacer
tcatttgaatttgaaaaactggttaataga	Protospacer
****************** *** .* * **

12. spacer 1.21|946170|30|NZ_CP015107|CRISPRCasFinder,CRT matches to NC_007060 (Staphylococcus phage 55, complete genome) position: , mismatch: 5, identity: 0.833

tcatttgaatttgaaaaaatgggcatttga	CRISPR spacer
tcatttgaatttgaaaaactggttaataga	Protospacer
****************** *** .* * **

13. spacer 1.21|946170|30|NZ_CP015107|CRISPRCasFinder,CRT matches to MN904510 (Staphylococcus phage vB_SauS-SAP27, complete genome) position: , mismatch: 5, identity: 0.833

tcatttgaatttgaaaaaatgggcatttga	CRISPR spacer
tcatttgaatttgaaaaactggttaataga	Protospacer
****************** *** .* * **

14. spacer 1.1|944853|30|NZ_CP015107|CRISPRCasFinder,CRT matches to NZ_CP010112 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence) position: , mismatch: 6, identity: 0.8

aatactttatacaatcaattaaaaagcgat	CRISPR spacer
catattttaaacaatcaattaaaatatgat	Protospacer
 ***.**** ************** ..***

15. spacer 1.2|944919|30|NZ_CP015107|CRISPRCasFinder,CRT matches to KT997847 (Uncultured phage_Deep1-GF2-KM23-C739 genomic sequence) position: , mismatch: 6, identity: 0.8

aaactacccgacattataaatttaatgata	CRISPR spacer
aaatttgtggacattataaatttagtgata	Protospacer
***.*  . ***************.*****

16. spacer 1.3|944985|29|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MN693191 (Marine virus AFVG_25M64, complete genome) position: , mismatch: 6, identity: 0.793

acttttgccttttcaaatctataatattg	CRISPR spacer
tcttttgccttttcatatctataatcaaa	Protospacer
 ************** *********   .

17. spacer 1.3|944985|29|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017464 (Staphylococcus pasteuri strain JS7 plasmid pSNJS701, complete sequence) position: , mismatch: 6, identity: 0.793

acttttgccttttcaaatctataatattg	CRISPR spacer
aactatgccttttaaattctataatatta	Protospacer
* .* ******** ** ***********.

18. spacer 1.3|944985|29|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017464 (Staphylococcus pasteuri strain JS7 plasmid pSNJS701, complete sequence) position: , mismatch: 6, identity: 0.793

acttttgccttttcaaatctataatattg	CRISPR spacer
aactatgccttttaaattctataatatta	Protospacer
* .* ******** ** ***********.

19. spacer 1.3|944985|29|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031281 (Staphylococcus pasteuri strain 3C plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

acttttgccttttcaaatctataatattg	CRISPR spacer
aactatgccttttaaattctataatatta	Protospacer
* .* ******** ** ***********.

20. spacer 1.3|944985|29|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031281 (Staphylococcus pasteuri strain 3C plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

acttttgccttttcaaatctataatattg	CRISPR spacer
aactatgccttttaaattctataatatta	Protospacer
* .* ******** ** ***********.

21. spacer 1.3|944985|29|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MN694755 (Marine virus AFVG_250M800, complete genome) position: , mismatch: 6, identity: 0.793

acttttgccttttcaaatctataatattg	CRISPR spacer
ttttttgctatttcaaatctataatgtag	Protospacer
 .******. ***************.* *

22. spacer 1.3|944985|29|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MN693315 (Marine virus AFVG_25M406, complete genome) position: , mismatch: 6, identity: 0.793

acttttgccttttcaaatctataatattg	CRISPR spacer
acccctgccttttctaatctataatcttt	Protospacer
**...********* ********** **

23. spacer 1.3|944985|29|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to KJ019082 (Synechococcus phage ACG-2014i isolate Syn7803US120, complete genome) position: , mismatch: 6, identity: 0.793

acttttgccttttcaaatctataatattg--	CRISPR spacer
tcttttaccttttcaaatctat--ttttaac	Protospacer
 *****.***************  * **.

24. spacer 1.3|944985|29|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MN694134 (Marine virus AFVG_250M799, complete genome) position: , mismatch: 6, identity: 0.793

acttttgccttttcaaatctataatattg	CRISPR spacer
ttttttgctatttcaaatctataatgtag	Protospacer
 .******. ***************.* *

25. spacer 1.3|944985|29|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MN693451 (Marine virus AFVG_25M222, complete genome) position: , mismatch: 6, identity: 0.793

acttttgccttttcaaatctataatattg	CRISPR spacer
acccctgccttttctaatctataatcttt	Protospacer
**...********* ********** **

26. spacer 1.3|944985|29|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MN693347 (Marine virus AFVG_25M221, complete genome) position: , mismatch: 6, identity: 0.793

acttttgccttttcaaatctataatattg	CRISPR spacer
acccctgccttttctaatctataatcttt	Protospacer
**...********* ********** **

27. spacer 1.3|944985|29|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MN693261 (Marine virus AFVG_25M255, complete genome) position: , mismatch: 6, identity: 0.793

acttttgccttttcaaatctataatattg	CRISPR spacer
acccctgccttttctaatctataatcttt	Protospacer
**...********* ********** **

28. spacer 1.3|944985|29|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MN693365 (Marine virus AFVG_25M220, complete genome) position: , mismatch: 6, identity: 0.793

acttttgccttttcaaatctataatattg	CRISPR spacer
acccctgccttttctaatctataatcttt	Protospacer
**...********* ********** **

29. spacer 1.6|945182|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011054 (Halomonas sp. KO116 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

aaaaacgaaccgactaaaaccacagctgag	CRISPR spacer
ggaattgaacagactaaaaccactgctgag	Protospacer
..** .**** ************ ******

30. spacer 1.8|945314|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040343 (Bacillus cereus strain DLOU-Weihai plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

ttttacatttattacattaacgataagcga	CRISPR spacer
ttttacatctattacattagcgaattgcaa	Protospacer
********.**********.***   **.*

31. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to AP014317 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S32-C52, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.8

aggttaaaaaaaataatttagtaaaagttt---	CRISPR spacer
ctgtttaaaaaaataatttagt---agtttgca	Protospacer
  *** ****************   *****

32. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NC_013516 (Streptobacillus moniliformis DSM 12112 plasmid pSMON01, complete sequence) position: , mismatch: 6, identity: 0.8

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
aaattaaagaaaataatttagaaaaaatat	Protospacer
*..*****.************ ****.* *

33. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027399 (Streptobacillus moniliformis strain FDAARGOS_310 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
aaattaaagaaaataatttagaaaaaatat	Protospacer
*..*****.************ ****.* *

34. spacer 1.3|944985|29|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016746 (Lactococcus lactis subsp. cremoris strain JM1 plasmid pMPJM1, complete sequence) position: , mismatch: 7, identity: 0.759

acttttgccttttcaaatctataatattg	CRISPR spacer
tttttttccttttcaattctataatacat	Protospacer
 .**** ********* *********.

35. spacer 1.3|944985|29|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016745 (Lactococcus lactis subsp. cremoris strain JM2 plasmid pMPJM2, complete sequence) position: , mismatch: 7, identity: 0.759

acttttgccttttcaaatctataatattg	CRISPR spacer
tttttttccttttcaattctataatacat	Protospacer
 .**** ********* *********.

36. spacer 1.9|945380|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MT909815 (Enterococcus phage iF6, complete genome) position: , mismatch: 7, identity: 0.767

acattacctttgtaagctactttatgttca	CRISPR spacer
ccattacctttgttagctcctttataagta	Protospacer
 ************ **** ******.  .*

37. spacer 1.11|945512|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MG649967 (Vibrio virus Thalassa, complete genome) position: , mismatch: 7, identity: 0.767

tcttaataataaataggaacaggtcatact	CRISPR spacer
acttaataaaaaataggaacagaagatgat	Protospacer
 ******** ************.  **. *

38. spacer 1.11|945512|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MT460515 (Vibrio phage Cody, complete genome) position: , mismatch: 7, identity: 0.767

tcttaataataaataggaacaggtcatact	CRISPR spacer
acttaataaaaaataggaacagaagatgat	Protospacer
 ******** ************.  **. *

39. spacer 1.11|945512|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MK895508 (Vibrio phage Brizo, complete genome) position: , mismatch: 7, identity: 0.767

tcttaataataaataggaacaggtcatact	CRISPR spacer
acttaataaaaaataggaacagaagatgat	Protospacer
 ******** ************.  **. *

40. spacer 1.11|945512|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NC_042095 (Vibrio phage Thalassa, complete genome) position: , mismatch: 7, identity: 0.767

tcttaataataaataggaacaggtcatact	CRISPR spacer
acttaataaaaaataggaacagaagatgat	Protospacer
 ******** ************.  **. *

41. spacer 1.11|945512|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MT460517 (Vibrio phage Athena, complete genome) position: , mismatch: 7, identity: 0.767

tcttaataataaataggaacaggtcatact	CRISPR spacer
acttaataaaaaataggaacagaagatgat	Protospacer
 ******** ************.  **. *

42. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NC_006872 (Clostridium perfringens plasmid pBCNF5603 DNA, complete sequence) position: , mismatch: 7, identity: 0.767

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
aagttaaagaaaataatttagaaaaacaaa	Protospacer
*.******.************ ****

43. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013044 (Clostridium perfringens strain JP55 plasmid pJFP55J, complete sequence) position: , mismatch: 7, identity: 0.767

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
aagttaaagaaaataatttagaaaaacaaa	Protospacer
*.******.************ ****

44. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MG205641 (Paeniclostridium sordellii strain 7508-A plasmid pCS1-7, complete sequence) position: , mismatch: 7, identity: 0.767

aggtta--aaaaaaataatttagtaaaagttt	CRISPR spacer
--tttaataaaaaaataatttagaaaaagaaa	Protospacer
   ***  *************** *****

45. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MG205643 (Paeniclostridium sordellii strain S0804018 plasmid pCS1-5, complete sequence) position: , mismatch: 7, identity: 0.767

aggtta---aaaaaaataatttagtaaaagttt	CRISPR spacer
---ttaaataaaaaaataatttagaaaaagaaa	Protospacer
   ***   *************** *****

46. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MG205642 (Paeniclostridium sordellii strain 7543-A plasmid pCS1-6, complete sequence) position: , mismatch: 7, identity: 0.767

aggtta--aaaaaaataatttagtaaaagttt	CRISPR spacer
--tttaataaaaaaataatttagaaaaagaaa	Protospacer
   ***  *************** *****

47. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR214980 (Mycoplasma cynos strain NCTC10142 plasmid 7) position: , mismatch: 7, identity: 0.767

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
attttgaaaaaaataatttattaaaatgtc	Protospacer
*  **.************** *****  *.

48. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR214980 (Mycoplasma cynos strain NCTC10142 plasmid 7) position: , mismatch: 7, identity: 0.767

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
attttgaaaaaaataatttattaaaatgtc	Protospacer
*  **.************** *****  *.

49. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 7, identity: 0.767

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
attttgaaaaaaataatttattaaaatgtc	Protospacer
*  **.************** *****  *.

50. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 7, identity: 0.767

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
attttgaaaaaaataatttattaaaatgtc	Protospacer
*  **.************** *****  *.

51. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 7, identity: 0.767

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
attttgaaaaaaataatttattaaaatgtc	Protospacer
*  **.************** *****  *.

52. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 7, identity: 0.767

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
gcattaaaaataataatttagttaaaaatt	Protospacer
. .******* *********** ***. **

53. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MK250021 (Prevotella phage Lak-B2, complete genome) position: , mismatch: 7, identity: 0.767

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
aagataataaaaataatttaggaaaagaca	Protospacer
*.* *** ************* ***** .

54. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MK250024 (Prevotella phage Lak-B5, complete genome) position: , mismatch: 7, identity: 0.767

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
aagataataaaaataatttaggaaaagaca	Protospacer
*.* *** ************* ***** .

55. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MK250028 (Prevotella phage Lak-B9, complete genome) position: , mismatch: 7, identity: 0.767

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
aagataataaaaataatttaggaaaagaca	Protospacer
*.* *** ************* ***** .

56. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MK250023 (Prevotella phage Lak-B4, complete genome) position: , mismatch: 7, identity: 0.767

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
aagataataaaaataatttaggaaaagaca	Protospacer
*.* *** ************* ***** .

57. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MK250025 (Prevotella phage Lak-B6, complete genome) position: , mismatch: 7, identity: 0.767

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
aagataataaaaataatttaggaaaagaca	Protospacer
*.* *** ************* ***** .

58. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MK250022 (Prevotella phage Lak-B3, complete genome) position: , mismatch: 7, identity: 0.767

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
aagataataaaaataatttaggaaaagaca	Protospacer
*.* *** ************* ***** .

59. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MK250027 (Prevotella phage Lak-B8, complete genome) position: , mismatch: 7, identity: 0.767

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
aagataataaaaataatttaggaaaagaca	Protospacer
*.* *** ************* ***** .

60. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MK250026 (Prevotella phage Lak-B7, complete genome) position: , mismatch: 7, identity: 0.767

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
aagataataaaaataatttaggaaaagaca	Protospacer
*.* *** ************* ***** .

61. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to KU686205 (Synechococcus phage S-CAM9 isolate 0908SB82, complete genome) position: , mismatch: 7, identity: 0.767

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
acattaaaaaatataaattagtaaaaaata	Protospacer
* .******** **** *********. *

62. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MK250020 (Prevotella phage Lak-B1, complete genome) position: , mismatch: 7, identity: 0.767

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
aagataataaaaataatttaggaaaagaca	Protospacer
*.* *** ************* ***** .

63. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009368 (Bacillus cereus strain FM1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
ttgataaaaaaaataattttgtaaatgctg	Protospacer
  * *************** ***** *.*

64. spacer 1.20|946105|29|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022091 (Staphylococcus saprophyticus strain FDAARGOS_355 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

tcaaaatgcaattttattgaatgttgaca	CRISPR spacer
tcgaaatgcaattttatggaatgatactc	Protospacer
**.************** ***** *. .

65. spacer 1.20|946105|29|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035296 (Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.759

tcaaaatgcaattttattgaatgttgaca	CRISPR spacer
tcgaaatgcaattttatggaatgatactc	Protospacer
**.************** ***** *. .

66. spacer 1.20|946105|29|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054577 (Staphylococcus saprophyticus strain UTI-050 plasmid pUTI-050-2, complete sequence) position: , mismatch: 7, identity: 0.759

tcaaaatgcaattttattgaatgttgaca	CRISPR spacer
tcgaaatgcaattttatggaatgatactc	Protospacer
**.************** ***** *. .

67. spacer 1.20|946105|29|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NC_007351 (Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 plasmid pSSP1, complete sequence) position: , mismatch: 7, identity: 0.759

tcaaaatgcaattttattgaatgttgaca	CRISPR spacer
tcgaaatgcaattttatggaatgatactc	Protospacer
**.************** ***** *. .

68. spacer 1.21|946170|30|NZ_CP015107|CRISPRCasFinder,CRT matches to MH598801 (Pelagibacter phage HTVC200P, complete genome) position: , mismatch: 7, identity: 0.767

tcatttgaatttgaaaaaatgggcatttga	CRISPR spacer
acatttgaatttgaaaatatggttaggtta	Protospacer
 **************** **** .*  * *

69. spacer 5.2|3130534|28|NZ_CP015107|PILER-CR matches to NZ_CP037921 (Hymenobacter sp. 17J36-26 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.75

tcgtggtagtttccttcaaaagtgatga	CRISPR spacer
ctggattagtttcattcaaaagtgatgc	Protospacer
..* . ******* *************

70. spacer 5.9|3130533|29|NZ_CP015107|CRT matches to NZ_CP037921 (Hymenobacter sp. 17J36-26 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

tcgtggtagtttccttcaaaagtgatgat	CRISPR spacer
ctggattagtttcattcaaaagtgatgct	Protospacer
..* . ******* ************* *

71. spacer 5.11|3130665|29|NZ_CP015107|CRT matches to NZ_CP011152 (Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence) position: , mismatch: 7, identity: 0.759

gttattgcgtcttcgatagaagcaacaag	CRISPR spacer
ttatttgcgtattcgatagaagcaagcat	Protospacer
 *  ****** **************  *

72. spacer 5.11|3130665|29|NZ_CP015107|CRT matches to NZ_CP011154 (Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence) position: , mismatch: 7, identity: 0.759

gttattgcgtcttcgatagaagcaacaag	CRISPR spacer
ttatttgcgtattcgatagaagcaagcat	Protospacer
 *  ****** **************  *

73. spacer 1.1|944853|30|NZ_CP015107|CRISPRCasFinder,CRT matches to NZ_LR215017 (Mycoplasma canis strain NCTC10146 plasmid 8) position: , mismatch: 8, identity: 0.733

aatactttatacaatcaattaaaaagcgat	CRISPR spacer
ataactttatacaatcaaataaaatcgaac	Protospacer
*  *************** *****   .*.

74. spacer 1.1|944853|30|NZ_CP015107|CRISPRCasFinder,CRT matches to NZ_LR215017 (Mycoplasma canis strain NCTC10146 plasmid 8) position: , mismatch: 8, identity: 0.733

aatactttatacaatcaattaaaaagcgat	CRISPR spacer
ataactttatacaatcaaataaaatcgaac	Protospacer
*  *************** *****   .*.

75. spacer 1.3|944985|29|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032530 (Bacillus megaterium NCT-2 plasmid pNCT2_2, complete sequence) position: , mismatch: 8, identity: 0.724

acttttgccttttcaaatctataatattg	CRISPR spacer
tatttttccttttaaaatctataatcaac	Protospacer
  **** ****** ***********

76. spacer 1.6|945182|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NC_048173 (Erwinia phage Derbicus, complete genome) position: , mismatch: 8, identity: 0.733

aaaaacgaaccgactaaaaccacagctgag	CRISPR spacer
aataacgaaccgaataaaaccacggagcga	Protospacer
** ********** *********.*   ..

77. spacer 1.6|945182|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NC_031007 (Erwinia phage vB_EamM_EarlPhillipIV, complete genome) position: , mismatch: 8, identity: 0.733

aaaaacgaaccgactaaaaccacagctgag	CRISPR spacer
aataacgaaccgaataaaaccacggagcga	Protospacer
** ********** *********.*   ..

78. spacer 1.7|945248|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MT074157 (Bacteroides phage SJC20, complete genome) position: , mismatch: 8, identity: 0.733

taccgttaccgtaatgtgctttgcgctgga	CRISPR spacer
gatcgttaccgttatgtgttttgcgcgaat	Protospacer
 *.********* *****.******* ..

79. spacer 1.7|945248|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MT074143 (Bacteroides phage HNL05, complete genome) position: , mismatch: 8, identity: 0.733

taccgttaccgtaatgtgctttgcgctgga	CRISPR spacer
gatcgttaccgttatgtgttttgcgcgaat	Protospacer
 *.********* *****.******* ..

80. spacer 1.7|945248|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MT074160 (Bacteroides phage SJC25, complete genome) position: , mismatch: 8, identity: 0.733

taccgttaccgtaatgtgctttgcgctgga	CRISPR spacer
gatcgttaccgttatgtgttttgcgcgaat	Protospacer
 *.********* *****.******* ..

81. spacer 1.7|945248|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MT074144 (Bacteroides phage HNL35, complete genome) position: , mismatch: 8, identity: 0.733

taccgttaccgtaatgtgctttgcgctgga	CRISPR spacer
gatcgttaccgttatgtgttttgcgcgaat	Protospacer
 *.********* *****.******* ..

82. spacer 1.8|945314|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032091 (Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

ttttacatttattacattaacgataagcga	CRISPR spacer
aaacgcagttattacattaacgataaggaa	Protospacer
   ..** ******************* .*

83. spacer 1.9|945380|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MK764441 (Flavobacterium phage FPSV-F12, complete genome) position: , mismatch: 8, identity: 0.733

acattacctttgtaagctactttatgttca	CRISPR spacer
tcattatctttgtaagctaatttaaaaata	Protospacer
 *****.************ **** .  .*

84. spacer 1.9|945380|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to KU599886 (Flavobacterium phage Fpv20, complete genome) position: , mismatch: 8, identity: 0.733

acattacctttgtaagctactttatgttca	CRISPR spacer
tcattatctttgtaagctaatttaaaaata	Protospacer
 *****.************ **** .  .*

85. spacer 1.9|945380|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NC_031931 (Flavobacterium phage Fpv2, complete genome) position: , mismatch: 8, identity: 0.733

acattacctttgtaagctactttatgttca	CRISPR spacer
tcattatctttgtaagctaatttaaaaata	Protospacer
 *****.************ **** .  .*

86. spacer 1.9|945380|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to KT876726 (Flavobacterium phage FpV21, complete genome) position: , mismatch: 8, identity: 0.733

acattacctttgtaagctactttatgttca	CRISPR spacer
tcattatctttgtaagctaatttaaaaata	Protospacer
 *****.************ **** .  .*

87. spacer 1.9|945380|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to KU599877 (Flavobacterium phage Fpv1, complete genome) position: , mismatch: 8, identity: 0.733

acattacctttgtaagctactttatgttca	CRISPR spacer
tcattatctttgtaagctaatttaaaaata	Protospacer
 *****.************ **** .  .*

88. spacer 1.13|945643|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.733

ttccgacatcttctttatttggcgctcctt	CRISPR spacer
tttcgacatcttctttatttgcttttaagt	Protospacer
**.****************** . .*   *

89. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047429 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-1, complete sequence) position: , mismatch: 8, identity: 0.733

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
gtgaataaaaaaacaatttagtaaaaattg	Protospacer
. *   *******.************.**

90. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047438 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-1, complete sequence) position: , mismatch: 8, identity: 0.733

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
gcgaataaaaaaacaatttagtaaaaattg	Protospacer
. *   *******.************.**

91. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047444 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-7) position: , mismatch: 8, identity: 0.733

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
gcgaataaaaaaacaatttagtaaaaattg	Protospacer
. *   *******.************.**

92. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018163 (Endosymbiont of Sipalinus gigas isolate NARSGI1 plasmid pSgi1, complete sequence) position: , mismatch: 8, identity: 0.733

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
taataaaaaaaaataatttaataaaaataa	Protospacer
 ..* ***************.*****.*

93. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018142 (Acinetobacter larvae strain BRTC-1 plasmid pRW2, complete sequence) position: , mismatch: 8, identity: 0.733

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
aatataaaaaatataattttgtaaaagaga	Protospacer
*.  ******* ******* *******

94. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 8, identity: 0.733

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
tgcttaaaaaaaataattttataaaaagaa	Protospacer
 * **************** .*****.

95. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039041 (Piscirickettsia salmonis strain Psal-072 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
ccgttaaaaaaattaatttattaaatttac	Protospacer
  ********** ******* ****  * .

96. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NC_013940 (Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence) position: , mismatch: 8, identity: 0.733

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
ctttactaaacaataatttattaaaagttt	Protospacer
   *   *** ********* *********

97. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MN693323 (Marine virus AFVG_25M87, complete genome) position: , mismatch: 8, identity: 0.733

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
aattaaaaacaaataatttagtaaaaaaga	Protospacer
*. * **** ****************.

98. spacer 1.20|946105|29|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to HQ633071 (Synechococcus phage S-SKS1 genomic sequence) position: , mismatch: 8, identity: 0.724

tcaaaatgcaattttattgaatgttgaca	CRISPR spacer
ataaaattcaattttatggaatgttttac	Protospacer
 .***** ********* *******

99. spacer 1.1|944853|30|NZ_CP015107|CRISPRCasFinder,CRT matches to MN693190 (Marine virus AFVG_25M52, complete genome) position: , mismatch: 9, identity: 0.7

aatactttatacaatcaattaaaaagcgat	CRISPR spacer
gtatctttatacaatcaagtaaaaacaaaa	Protospacer
.   ************** ******  .*

100. spacer 1.1|944853|30|NZ_CP015107|CRISPRCasFinder,CRT matches to MN693247 (Marine virus AFVG_25M51, complete genome) position: , mismatch: 9, identity: 0.7

aatactttatacaatcaattaaaaagcgat	CRISPR spacer
gtatctttatacaatcaagtaaaaacaaaa	Protospacer
.   ************** ******  .*

101. spacer 1.1|944853|30|NZ_CP015107|CRISPRCasFinder,CRT matches to NZ_CP019972 (Enterococcus faecium isolate 2014-VREF-114 plasmid p114-2 sequence) position: , mismatch: 9, identity: 0.7

aatactttatacaatcaattaaaaagcgat	CRISPR spacer
aaaactttatacaatcaattattttcacgt	Protospacer
** ******************       .*

102. spacer 1.10|945446|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to CP054909 (Pantoea ananatis strain FDAARGOS_680 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

ttgcctcttatatagagaaaaataacttga	CRISPR spacer
agatctcttatatatagaaaaataattgtt	Protospacer
  ..********** **********.*

103. spacer 1.12|945578|29|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MK554696 (Fusobacterium phage Fnu1, complete genome) position: , mismatch: 9, identity: 0.69

cgcaccagcatcaaaaaattttgattatg	CRISPR spacer
gtttccagcatcaaaaaatttttatctgt	Protospacer
  . ****************** **.

104. spacer 1.12|945578|29|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MN830253 (Lactobacillus phage JNU_P5, complete genome) position: , mismatch: 9, identity: 0.69

cgcaccagcatcaaaaaattttgattatg	CRISPR spacer
tctttcagcatcacaaaattttgatttaa	Protospacer
. . .******** ************  .

105. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010578 (Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB232, complete sequence) position: , mismatch: 9, identity: 0.7

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
acacaaaaaaatataatttagtaaaaaggg	Protospacer
* .. ****** **************.

106. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 9, identity: 0.7

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
cttgtaaaaaacataatttagttaaagcaa	Protospacer
    ******* ********** ****.

107. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013682 (Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence) position: , mismatch: 9, identity: 0.7

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
gagggaaataaaataatttagtaaaatagg	Protospacer
..*  *** *****************

108. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013295 (Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence) position: , mismatch: 9, identity: 0.7

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
gagggaaataaaataatttagtaaaatagg	Protospacer
..*  *** *****************

109. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to MT724048 (Staphylococcus phage SAP3, partial genome) position: , mismatch: 9, identity: 0.7

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
gaaggaaaaaaattaatttagttaaagtga	Protospacer
...  ******* ********* *****

110. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010582 (Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB51, complete sequence) position: , mismatch: 9, identity: 0.7

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
acacaaaaaaatataatttagtaaaaaggg	Protospacer
* .. ****** **************.

111. spacer 1.16|945841|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to HQ633071 (Synechococcus phage S-SKS1 genomic sequence) position: , mismatch: 9, identity: 0.7

aggttaaaaaaaataatttagtaaaagttt	CRISPR spacer
cagttaaaaataataatttagtatttgacc	Protospacer
 .******** ************   * ..

112. spacer 1.19|946039|30|NZ_CP015107|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 9, identity: 0.7

ttcaaatggattaactcgtttaacagaatt	CRISPR spacer
gttaaatggattacctcgtttaactaccac	Protospacer
 *.********** ********** .   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

605186 : 667019

Clostridium_phage(30.0%)

tRNA,integrase

attL 660489:660514|attR 669144:669169

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_063743192.1\|605186_607823_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.1e-91	39.5
WP_063743194.1\|608091_609195_-	hypothetical protein	NA	NA	NA	NA
WP_063743196.1\|609318_610167_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_063743198.1\|610282_611032_+	ABC transporter permease	NA	NA	NA	NA
WP_063743200.1\|611034_611802_+	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_063743202.1\|612020_613025_-	sphingomyelin phosphodiesterase	A0A1P8L6H7	Staphylococcus_phage	4.6e-27	33.1
WP_063743204.1\|613867_614926_-	mannose-1-phosphate guanylyltransferase	A0A1V0SH58	Hokovirus	1.0e-37	32.9
WP_063743206.1\|614968_615568_-	metallopeptidase	NA	NA	NA	NA
WP_063743208.1\|615957_616641_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_063743209.1\|616630_617572_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_063743210.1\|617584_619180_-	hypothetical protein	NA	NA	NA	NA
WP_063743211.1\|619306_620935_-	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	NA	NA	NA	NA
WP_060383012.1\|620941_621940_-	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA
WP_060383878.1\|622111_622594_-	cytidine deaminase	NA	NA	NA	NA
WP_060383013.1\|622669_623860_-	type IX secretion system outer membrane channel protein PorV	NA	NA	NA	NA
WP_063743212.1\|623898_627720_-	type IX secretion system sortase PorU	NA	NA	NA	NA
WP_060383015.1\|627918_629646_+	gliding motility lipoprotein GldJ	A0A075BSL8	Microcystis_phage	5.3e-07	33.3
WP_060383016.1\|629711_630995_+	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA
WP_060383017.1\|631318_632014_+	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_060383018.1\|632032_632758_+	PorT family protein	NA	NA	NA	NA
WP_063743213.1\|632898_634812_+	T9SS type A sorting domain-containing protein	NA	NA	NA	NA
WP_063743214.1\|634824_644484_+	hypothetical protein	NA	NA	NA	NA
WP_145915566.1\|644485_645019_+	hypothetical protein	NA	NA	NA	NA
WP_063743216.1\|645059_645413_-	helix-turn-helix transcriptional regulator	A0A0A7RUJ5	Clostridium_phage	1.4e-07	36.4
WP_063743217.1\|645579_647898_+	toprim domain-containing protein	NA	NA	NA	NA
WP_063743218.1\|648036_648912_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	4.7e-12	23.8
WP_081248734.1\|648898_649756_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_063743219.1\|650717_651512_+	hypothetical protein	NA	NA	NA	NA
WP_145915566.1\|651513_652047_+	hypothetical protein	NA	NA	NA	NA
WP_063743216.1\|652087_652441_-	helix-turn-helix transcriptional regulator	A0A0A7RUJ5	Clostridium_phage	1.4e-07	36.4
WP_063743217.1\|652607_654926_+	toprim domain-containing protein	NA	NA	NA	NA
WP_063743218.1\|655064_655940_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	4.7e-12	23.8
WP_081248734.1\|655926_656784_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_063743220.1\|657745_658588_+	hypothetical protein	NA	NA	NA	NA
WP_123907311.1\|658722_658971_+	hypothetical protein	NA	NA	NA	NA
WP_158447602.1\|659027_659201_-	hypothetical protein	NA	NA	NA	NA
WP_060383022.1\|659395_660286_+	hypothetical protein	NA	NA	NA	NA
660489:660514	attL	NA	NA	NA	NA
WP_060383023.1\|660791_661763_+	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA
WP_060383024.1\|661773_662100_+	DUF1493 family protein	NA	NA	NA	NA
WP_060383025.1\|662138_662465_-	helix-turn-helix transcriptional regulator	X5JA02	Clostridium_phage	3.8e-07	37.3
WP_063743221.1\|662629_663430_+	hypothetical protein	NA	NA	NA	NA
WP_063743222.1\|663450_664938_+	hypothetical protein	NA	NA	NA	NA
WP_063743223.1\|665214_666132_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	4.8e-15	28.5
WP_060383027.1\|666128_667019_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
669144:669169	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1478761 : 1493605

Leptospira_phage(42.86%)

integrase

attL 1487339:1487356|attR 1493896:1493913

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060383627.1\|1478761_1479589_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	4.6e-17	23.7
WP_060383626.1\|1479588_1480407_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_145902579.1\|1481468_1481924_+	hypothetical protein	NA	NA	NA	NA
WP_060383629.1\|1481934_1482216_+	hypothetical protein	NA	NA	NA	NA
WP_060383628.1\|1482372_1482738_-	helix-turn-helix transcriptional regulator	A0A0N9HJE7	Vibrio_phage	8.5e-08	31.2
WP_063743523.1\|1482872_1484813_+	toprim domain-containing protein	A0A2R3UAP7	Myoviridae_environmental_samples	9.5e-05	41.3
WP_063743524.1\|1484911_1485241_+	hypothetical protein	NA	NA	NA	NA
WP_060383627.1\|1485361_1486189_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	4.6e-17	23.7
WP_060383626.1\|1486188_1487007_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
1487339:1487356	attL	NA	NA	NA	NA
WP_145902579.1\|1488068_1488524_+	hypothetical protein	NA	NA	NA	NA
WP_060383629.1\|1488534_1488816_+	hypothetical protein	NA	NA	NA	NA
WP_060383628.1\|1488972_1489338_-	helix-turn-helix transcriptional regulator	A0A0N9HJE7	Vibrio_phage	8.5e-08	31.2
WP_081248746.1\|1489472_1490501_+	toprim domain-containing protein	A0A2R3UAP7	Myoviridae_environmental_samples	5.0e-05	41.3
WP_063743525.1\|1490559_1490901_+	hypothetical protein	NA	NA	NA	NA
WP_063743526.1\|1490957_1491839_+	hypothetical protein	NA	NA	NA	NA
WP_060383627.1\|1491959_1492787_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	4.6e-17	23.7
WP_060383626.1\|1492786_1493605_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
1493896:1493913	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1582645 : 1665018

Brevibacillus_phage(37.5%)

tRNA,integrase

attL 1644803:1644832|attR 1675364:1675393

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060383556.1\|1582645_1583917_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	5.3e-65	35.3
WP_081078450.1\|1583993_1585835_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_060383555.1\|1585918_1586230_+	DUF4286 family protein	NA	NA	NA	NA
WP_060383553.1\|1586930_1587710_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_060383552.1\|1587699_1589052_+	magnesium transporter	NA	NA	NA	NA
WP_063743559.1\|1589540_1592864_-	T9SS type A sorting domain-containing protein	NA	NA	NA	NA
WP_063743560.1\|1592967_1593744_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_060383549.1\|1593816_1594788_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_162492333.1\|1595116_1595887_+	DUF3108 domain-containing protein	NA	NA	NA	NA
WP_060383547.1\|1595891_1596815_+	tryptophan 2,3-dioxygenase	NA	NA	NA	NA
WP_060383546.1\|1596886_1598524_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_063743561.1\|1598701_1601449_+	TonB-dependent receptor plug domain-containing protein	A0A218MME2	uncultured_virus	2.6e-101	35.9
WP_145902570.1\|1602127_1603468_+	hypothetical protein	NA	NA	NA	NA
WP_081078449.1\|1603803_1604127_+	prepilin-type cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_063743562.1\|1604616_1606023_+	type II/IV secretion system protein	NA	NA	NA	NA
WP_063743563.1\|1606024_1607950_+	type II and III secretion system protein	A7BJX1	Enterobacteria_phage	2.4e-16	24.6
WP_060383539.1\|1607949_1609125_+	hypothetical protein	NA	NA	NA	NA
WP_060383538.1\|1609117_1609639_+	hypothetical protein	NA	NA	NA	NA
WP_063743564.1\|1609625_1610588_+	hypothetical protein	NA	NA	NA	NA
WP_060383536.1\|1610587_1611112_+	hypothetical protein	NA	NA	NA	NA
WP_060383535.1\|1611709_1612615_-	DUF3078 domain-containing protein	NA	NA	NA	NA
WP_060383534.1\|1612953_1613286_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_060383533.1\|1613351_1614122_-	DUF3050 domain-containing protein	A0A1L7N1A4	Ralstonia_phage	1.6e-32	33.2
WP_063743565.1\|1615943_1617065_-	type II secretion system F family protein	NA	NA	NA	NA
WP_060383530.1\|1617054_1617546_-	hypothetical protein	NA	NA	NA	NA
WP_060383529.1\|1617535_1617877_-	hypothetical protein	NA	NA	NA	NA
WP_145902569.1\|1617851_1618913_-	hypothetical protein	NA	NA	NA	NA
WP_145915584.1\|1619049_1619592_-	hypothetical protein	NA	NA	NA	NA
WP_060383526.1\|1619810_1620317_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_060383525.1\|1620303_1620903_+	hypothetical protein	NA	NA	NA	NA
WP_063743567.1\|1620899_1626602_+	hypothetical protein	NA	NA	NA	NA
WP_063743568.1\|1626694_1631578_+	hypothetical protein	NA	NA	NA	NA
WP_063743569.1\|1631577_1632282_+	hypothetical protein	NA	NA	NA	NA
WP_063743570.1\|1632346_1633867_+	hypothetical protein	NA	NA	NA	NA
WP_063743571.1\|1633866_1636911_+	hypothetical protein	NA	NA	NA	NA
WP_063743572.1\|1636886_1643891_+	RHS repeat protein	NA	NA	NA	NA
WP_063743573.1\|1643890_1644691_+	hypothetical protein	NA	NA	NA	NA
1644803:1644832	attL	NA	NA	NA	NA
WP_077225773.1\|1645231_1646158_+	DUF2778 domain-containing protein	NA	NA	NA	NA
WP_123906726.1\|1646159_1646564_+	hypothetical protein	NA	NA	NA	NA
WP_063743576.1\|1646621_1646978_-	helix-turn-helix transcriptional regulator	I3VYY8	Thermoanaerobacterium_phage	7.8e-06	31.3
WP_063744171.1\|1647119_1648709_+	hypothetical protein	NA	NA	NA	NA
WP_063743577.1\|1648769_1649804_+\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	1.5e-12	24.7
WP_063743578.1\|1649796_1650573_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_081248751.1\|1651505_1652567_+	hypothetical protein	NA	NA	NA	NA
WP_063743581.1\|1652574_1653261_+	hypothetical protein	NA	NA	NA	NA
WP_063743582.1\|1653424_1653703_-	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	NA	NA	NA
WP_063743583.1\|1653702_1653954_-	DUF2281 domain-containing protein	NA	NA	NA	NA
WP_063743584.1\|1653960_1654299_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_063743585.1\|1654454_1656038_+	hypothetical protein	NA	NA	NA	NA
WP_063743586.1\|1656056_1657094_+\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	1.2e-11	24.5
WP_063743587.1\|1657086_1657863_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_063743581.1\|1659729_1660416_+	hypothetical protein	NA	NA	NA	NA
WP_063743582.1\|1660579_1660858_-	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	NA	NA	NA
WP_063743583.1\|1660857_1661109_-	DUF2281 domain-containing protein	NA	NA	NA	NA
WP_063743584.1\|1661115_1661454_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_063743585.1\|1661609_1663193_+	hypothetical protein	NA	NA	NA	NA
WP_063743586.1\|1663211_1664249_+\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	1.2e-11	24.5
WP_063743587.1\|1664241_1665018_+\|integrase	site-specific integrase	NA	NA	NA	NA
1675364:1675393	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1671028 : 1718724

Brevibacillus_phage(30.0%)

integrase,tRNA

attL 1675376:1675396|attR 1690093:1690113

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081248754.1\|1671028_1672063_+\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	9.5e-12	23.6
WP_063743594.1\|1672055_1672832_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_063743596.1\|1674819_1675176_+	hypothetical protein	NA	NA	NA	NA
1675376:1675396	attL	NA	NA	NA	NA
WP_014166054.1\|1675500_1675767_+	hypothetical protein	NA	NA	NA	NA
WP_060383517.1\|1676129_1676483_-	helix-turn-helix transcriptional regulator	A0A0P0IZG9	Lactobacillus_phage	4.8e-08	40.6
WP_060383516.1\|1676635_1678219_+	hypothetical protein	NA	NA	NA	NA
WP_060383515.1\|1678279_1679326_+\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	2.3e-13	23.0
WP_060383514.1\|1679318_1680095_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_081248756.1\|1681026_1681872_+	hypothetical protein	NA	NA	NA	NA
WP_063743598.1\|1681876_1682059_+	hypothetical protein	NA	NA	NA	NA
WP_063743599.1\|1682063_1682321_+	MafI family immunity protein	NA	NA	NA	NA
WP_014166054.1\|1682681_1682948_+	hypothetical protein	NA	NA	NA	NA
WP_060383517.1\|1683310_1683664_-	helix-turn-helix transcriptional regulator	A0A0P0IZG9	Lactobacillus_phage	4.8e-08	40.6
WP_060383516.1\|1683816_1685400_+	hypothetical protein	NA	NA	NA	NA
WP_060383515.1\|1685460_1686507_+\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	2.3e-13	23.0
WP_060383514.1\|1686499_1687276_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_081248757.1\|1688207_1689206_+	hypothetical protein	NA	NA	NA	NA
WP_158447618.1\|1689795_1689957_-	hypothetical protein	NA	NA	NA	NA
WP_060383508.1\|1690330_1690567_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
1690093:1690113	attR	NA	NA	NA	NA
WP_060383507.1\|1690566_1690890_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_060383506.1\|1691971_1693186_-	ABC transporter permease	NA	NA	NA	NA
WP_060383505.1\|1693191_1693584_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_060383504.1\|1693664_1694069_+	methylmalonyl-CoA epimerase	NA	NA	NA	NA
WP_060383503.1\|1694442_1698975_+	DNA polymerase III subunit alpha	A0A0K1Y8F0	Streptomyces_phage	3.5e-175	34.9
WP_063743601.1\|1699023_1700976_+	T9SS type A sorting domain-containing protein	A0A2K9L5D3	Tupanvirus	2.3e-14	27.1
WP_060383501.1\|1701035_1701950_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA
WP_063743602.1\|1702193_1702871_+	aquaporin Z	NA	NA	NA	NA
WP_060383499.1\|1703079_1704165_+	porin	NA	NA	NA	NA
WP_060383498.1\|1704270_1705353_+	biotin synthase BioB	NA	NA	NA	NA
WP_063743603.1\|1705368_1705587_-	hypothetical protein	NA	NA	NA	NA
WP_014166107.1\|1705648_1706653_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.8e-116	62.2
WP_060383496.1\|1706679_1707069_-	HIT family protein	NA	NA	NA	NA
WP_060383901.1\|1707085_1707562_-	transcription elongation factor GreA	NA	NA	NA	NA
WP_063743604.1\|1707718_1708144_+	hypothetical protein	NA	NA	NA	NA
WP_063743605.1\|1708337_1709495_+	homogentisate 1,2-dioxygenase	NA	NA	NA	NA
WP_063743606.1\|1709578_1710742_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA
WP_060383492.1\|1710916_1711621_-	methyltransferase	NA	NA	NA	NA
WP_060383491.1\|1711779_1712307_-	16S rRNA processing protein RimM	NA	NA	NA	NA
WP_060383490.1\|1712323_1712845_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_060383489.1\|1713011_1713701_+	hypothetical protein	NA	NA	NA	NA
WP_063744174.1\|1713932_1714883_+	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_014166118.1\|1715170_1715488_+	thioredoxin	A0A1J0GW78	Streptomyces_phage	4.2e-19	47.8
WP_063743607.1\|1715563_1716490_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_063743608.1\|1716972_1718724_+\|tRNA	aspartate--tRNA ligase	A0A2K9KZX5	Tupanvirus	1.5e-17	25.7

DBSCAN-SWA_5

2207966 : 2216078

Escherichia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_063743750.1\|2207966_2210438_+	polysaccharide biosynthesis tyrosine autokinase	A0A1X9I5D6	Streptococcus_phage	1.2e-23	36.5
WP_063743751.1\|2210439_2211411_+	SDR family oxidoreductase	A0A2K9L0I7	Tupanvirus	5.5e-86	48.6
WP_063744182.1\|2211410_2212685_+	nucleotide sugar dehydrogenase	M1IC36	Acanthocystis_turfacea_Chlorella_virus	4.3e-22	26.8
WP_063743752.1\|2212710_2214084_+	UDP-glucose 6-dehydrogenase	A0A127AXI2	Bacillus_phage	2.4e-63	34.8
WP_063743753.1\|2214090_2215137_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	6.1e-83	48.9
WP_063743754.1\|2215205_2216078_+	glucose-1-phosphate thymidylyltransferase RfbA	A0A291LA53	Escherichia_phage	3.9e-99	59.0

DBSCAN-SWA_6

3064106 : 3134490

Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage(36.36%)

integrase,transposase

attL 3067450:3067466|attR 3072584:3072600

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_063744038.1\|3064106_3064979_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	2.3e-27	33.2
WP_060381903.1\|3065053_3065914_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.9e-29	33.7
WP_127822287.1\|3065910_3066165_-	hypothetical protein	NA	NA	NA	NA
WP_060381901.1\|3067090_3067822_+	DUF1266 domain-containing protein	NA	NA	NA	NA
3067450:3067466	attL	NA	NA	NA	NA
WP_081078390.1\|3068494_3068815_+	DUF4377 domain-containing protein	NA	NA	NA	NA
WP_063744040.1\|3070938_3072012_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	1.9e-31	33.0
WP_145915604.1\|3072223_3072880_+	hypothetical protein	NA	NA	NA	NA
3072584:3072600	attR	NA	NA	NA	NA
WP_081248777.1\|3073053_3073836_+	hypothetical protein	NA	NA	NA	NA
WP_063744044.1\|3074050_3075202_+	hypothetical protein	NA	NA	NA	NA
WP_063744046.1\|3075201_3076974_+	ATP-binding protein	NA	NA	NA	NA
WP_060381895.1\|3077274_3077487_+	hypothetical protein	NA	NA	NA	NA
WP_060381894.1\|3077493_3078288_+	Fic family protein	NA	NA	NA	NA
WP_063744047.1\|3078405_3078969_+	hypothetical protein	NA	NA	NA	NA
WP_060381892.1\|3078970_3079294_+	hypothetical protein	NA	NA	NA	NA
WP_063744053.1\|3080678_3081251_+	hypothetical protein	NA	NA	NA	NA
WP_063744055.1\|3081260_3081572_+	DUF1493 family protein	NA	NA	NA	NA
WP_063744057.1\|3082150_3082855_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.2e-27	33.5
WP_060381890.1\|3082857_3084441_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	3.9e-25	26.9
WP_060381889.1\|3084509_3085097_-	dephospho-CoA kinase	NA	NA	NA	NA
WP_060381888.1\|3085096_3086098_-	glycosyltransferase	NA	NA	NA	NA
WP_060381887.1\|3086540_3087731_-	trans-2-enoyl-CoA reductase family protein	NA	NA	NA	NA
WP_060381886.1\|3087772_3089425_-	DNA repair protein RecN	NA	NA	NA	NA
WP_081078471.1\|3089434_3090262_-	DUF4835 family protein	NA	NA	NA	NA
WP_063744059.1\|3090314_3091523_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	2.1e-26	27.6
WP_014165513.1\|3091537_3091852_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_060381883.1\|3091861_3092656_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_060381882.1\|3092766_3093648_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_060381881.1\|3093652_3094171_-	hypothetical protein	NA	NA	NA	NA
WP_060381880.1\|3094272_3095025_+	5'-nucleotidase C-terminal domain-containing protein	NA	NA	NA	NA
WP_063744061.1\|3095044_3095965_+	metallophosphatase	NA	NA	NA	NA
WP_063744062.1\|3096360_3097482_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA
WP_063744063.1\|3097809_3100815_-	serine hydrolase	NA	NA	NA	NA
WP_060381876.1\|3100824_3101307_-	hypothetical protein	NA	NA	NA	NA
WP_060381875.1\|3101314_3102106_-	(Fe-S)-binding protein	NA	NA	NA	NA
WP_060381874.1\|3102141_3103476_-	(Fe-S)-binding protein	NA	NA	NA	NA
WP_060381873.1\|3103505_3104456_-	MCE family protein	NA	NA	NA	NA
WP_063744064.1\|3104486_3105677_-	N-acetylmuramoyl-L-alanine amidase	E5DV68	Deep-sea_thermophilic_phage	3.9e-17	30.7
WP_063744197.1\|3105744_3108474_+	LPS-assembly protein LptD	NA	NA	NA	NA
WP_060381871.1\|3108591_3108972_+	RidA family protein	NA	NA	NA	NA
WP_060381868.1\|3111137_3113027_-	molecular chaperone DnaK	A0A0N9QXN8	Chrysochromulina_ericina_virus	3.6e-142	51.7
WP_060381867.1\|3113509_3114415_-	hypothetical protein	NA	NA	NA	NA
WP_063744066.1\|3115283_3116192_-	hypothetical protein	NA	NA	NA	NA
WP_063744067.1\|3116360_3117248_-	EamA family transporter	NA	NA	NA	NA
WP_060381863.1\|3117331_3118987_-	hypothetical protein	NA	NA	NA	NA
WP_060381862.1\|3119071_3119992_+	hypothetical protein	NA	NA	NA	NA
WP_060381861.1\|3119993_3120539_-	Smr/MutS family protein	NA	NA	NA	NA
WP_081248778.1\|3120585_3120897_+	DUF2752 domain-containing protein	NA	NA	NA	NA
WP_060381859.1\|3121044_3122289_-	ornithine--oxo-acid transaminase	NA	NA	NA	NA
WP_063744068.1\|3122549_3124001_+	DUF839 domain-containing protein	NA	NA	NA	NA
WP_063744069.1\|3124181_3125936_+	hypothetical protein	NA	NA	NA	NA
WP_060381856.1\|3125968_3126505_-	DUF1697 domain-containing protein	NA	NA	NA	NA
WP_063744070.1\|3126651_3130293_+	hypothetical protein	NA	NA	NA	NA
WP_063744071.1\|3131847_3132696_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	2.7e-28	29.6
WP_063744072.1\|3132750_3133587_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.3e-27	28.6
WP_063744073.1\|3133641_3134490_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	9.2e-29	35.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP015107

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection