CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015622	Corynebacterium crudilactis strain JZ16 chromosome, complete genome	5 crisprs	DEDDh,csa3,cas3,WYL,DinG	0	3	0	0
NZ_CP015623	Corynebacterium crudilactis strain JZ16 plasmid pCRULAC1, complete sequence	2 crisprs	DEDDh	0	2	1	0
NZ_CP015624	Corynebacterium crudilactis strain JZ16 plasmid pCRULAC2, complete sequence	1 crisprs	NA	1	1	0	0

1. NZ_CP015622

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015622_1

• CRISPR_ID: NZ_CP015622_1
• CRISPR_location: 362339-362489
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NZ_CP015622_1

Consensus_repeat	Method
GGGACCATCCCCACGTGAGCGGGGAGAAC	CRISPRCasFinder

spacers of NZ_CP015622_1

>1.1|362368|32|NZ_CP015622|CRISPRCasFinder
GCTCTGTATGTGGTGAGCCCTGCGGTTCCATC
>1.2|362429|32|NZ_CP015622|CRISPRCasFinder
CAAAAAGCTGATTCGGTCTGTCGCCCGGCTTA

CRISPR arrays and Neighbor proteins around NZ_CP015622_1

CRISPR arrays

The CRISPR arrays of NZ_CP015622_1

>merge|NZ_CP015622|1|362339-362489|CRISPRCasFinder
GAGACCATCCCCACCTAGGCGGGGAGAACGCTCTGTATGTGGTGAGCCCTGCGGTTCCATCGGGACCATCCCCACGTGAGCGGGGAGAACCAAAAAGCTGATTCGGTCTGTCGCCCGGCTTAGGGACCATCCCCACGTGAGCGGGGAGAAC

>NZ_CP015622|1|1|362339-362489|CRISPRCasFinder
GAGACCATCCCCACCTAGGCGGGGAGAAC	GCTCTGTATGTGGTGAGCCCTGCGGTTCCATC
GGGACCATCCCCACGTGAGCGGGGAGAAC	CAAAAAGCTGATTCGGTCTGTCGCCCGGCTTA
GGGACCATCCCCACGTGAGCGGGGAGAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015622.1|WP_082868770.1|372118_373606_-|M1-family-metallopeptidase	unknown	unknown	gnl|CDD|341066
NZ_CP015622.1|WP_066569387.1|362753_363815_-|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl|CDD|176186
NZ_CP015622.1|WP_066563984.1|364742_365600_-|glucose-1-phosphate-thymidylyltransferase-RfbA	unknown	unknown	gnl|CDD|130274
NZ_CP015622.1|WP_066563970.1|353599_354811_+|MFS-transporter	unknown	unknown	gnl|CDD|340883
NZ_CP015622.1|WP_066563976.1|357333_358356_+|hypothetical-protein	unknown	unknown	gnl|CDD|223405
NZ_CP015622.1|WP_066563962.1|351060_352167_+|S-(hydroxymethyl)mycothiol-dehydrogenase	unknown	unknown	gnl|CDD|132492
NZ_CP015622.1|WP_066563973.1|354832_355768_+|GDP-mannose-4,6-dehydratase	unknown	unknown	gnl|CDD|187566
NZ_CP015622.1|WP_066563964.1|352168_352804_+|MBL-fold-metallo-hydrolase	unknown	unknown	gnl|CDD|293792
NZ_CP015622.1|WP_066563967.1|352832_353504_+|SDR-family-oxidoreductase	unknown	unknown	gnl|CDD|212491
NZ_CP015622.1|WP_066563994.1|368166_369594_+|YeeE/YedE-family-protein	unknown	unknown	gnl|CDD|377230
NZ_CP015622.1|WP_066563997.1|369988_370630_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015622.1|WP_066563975.1|356181_356547_-|DUF2304-domain-containing-protein	unknown	unknown	gnl|CDD|378376
NZ_CP015622.1|WP_066563981.1|363890_364739_+|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl|CDD|197666
NZ_CP015622.1|WP_066563979.1|359589_361641_+|bifunctional-metallophosphatase/5'-nucleotidase	unknown	unknown	gnl|CDD|223808
NZ_CP015622.1|WP_066563978.1|358394_359432_+|glycosyltransferase-family-2-protein	unknown	unknown	gnl|CDD|224137
NZ_CP015622.1|WP_066564007.1|373602_375621_-|S9-family-peptidase	unknown	unknown	gnl|CDD|224422
NZ_CP015622.1|WP_066564002.1|370832_372119_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015622.1|WP_066563988.1|365600_366953_-|sugar-nucleotide-binding-protein	unknown	unknown	gnl|CDD|224016
NZ_CP015622.1|WP_066563991.1|366952_367972_-|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl|CDD|224013
NZ_CP015622.1|WP_066569384.1|356543_357254_-|glycosyltransferase-family-2-protein	unknown	unknown	gnl|CDD|133022

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP015622.1|WP_082868770.1|372118_373606_-|M1-family-metallopeptidase	gnl|CDD|341066	cd09603, M1_APN_like, Peptidase M1 family similar to aminopeptidase N catalytic domain. This family contains mostly bacterial and some archaeal M1 peptidases with smilarity to the catalytic domain of aminopeptidase N (APN; CD13; alanyl aminopeptidase; EC 3.4.11.2), a type II integral membrane protease belonging to the M1 gluzincin family. APN preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and, in higher eukaryotes, is present in a variety of human tissues and cell types (leukocyte, fibroblast, endothelial and epithelial cells). APN expression is dysregulated in inflammatory diseases such as chronic pain, rheumatoid arthritis, multiple sclerosis, systemic sclerosis, systemic lupus erythematosus, polymyositis/dermatomyosytis and pulmonary sarcoidosis, and is enhanced in tumor cells such as melanoma, renal, prostate, pancreas, colon, gastric and thyroid cancers. It is predominantly expressed on stem cells and on cells of the granulocytic and monocytic lineages at distinct stages of differentiation, thus considered a marker of differentiation. Thus, APN inhibition may lead to the development of anti-cancer and anti-inflammatory drugs. APNs are also present in many pathogenic bacteria and represent potential drug targets. Some APNs have been used commercially, such as one from Lactococcus lactis used in the food industry. APN also serves as a receptor for coronaviruses, although the virus receptor interaction site seems to be distinct from the enzymatic site and aminopeptidase activity is not necessary for viral infection. APNs have also been extensively studied as putative Cry toxin receptors. Cry1 proteins are pore-forming toxins that bind to the midgut epithelial cell membrane of susceptible insect larvae, causing extensive damage. Several different toxins, including Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have been shown to bind to APNs; however, a direct role of APN in cytotoxicity has been yet to be firmly established.	1.21072e-145
NZ_CP015622.1|WP_066569387.1|362753_363815_-|NAD(P)-dependent-alcohol-dehydrogenase	gnl|CDD|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	9.62633e-178
NZ_CP015622.1|WP_066563984.1|364742_365600_-|glucose-1-phosphate-thymidylyltransferase-RfbA	gnl|CDD|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	8.78811e-163
NZ_CP015622.1|WP_066563970.1|353599_354811_+|MFS-transporter	gnl|CDD|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.15126e-17
NZ_CP015622.1|WP_066563976.1|357333_358356_+|hypothetical-protein	gnl|CDD|223405	COG0328, RnhA, Ribonuclease HI [DNA replication, recombination, and repair].	1.78414e-22
NZ_CP015622.1|WP_066563962.1|351060_352167_+|S-(hydroxymethyl)mycothiol-dehydrogenase	gnl|CDD|132492	TIGR03451, S-hydroxymethylmycothiol_dehydrogenase, S-(hydroxymethyl)mycothiol dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. [Cellular processes, Detoxification].	0
NZ_CP015622.1|WP_066563973.1|354832_355768_+|GDP-mannose-4,6-dehydratase	gnl|CDD|187566	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs. This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.37135e-112
NZ_CP015622.1|WP_066563964.1|352168_352804_+|MBL-fold-metallo-hydrolase	gnl|CDD|293792	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases which can catalyze the hydrolysis of a wide range of beta-lactam antibiotics, hydroxyacylglutathione hydrolases (also called glyoxalase II) which hydrolyze S-d-lactoylglutathione to d-lactate in the second step of the glycoxlase system, AHL lactonases which catalyze the hydrolysis and opening of the homoserine lactone rings of acyl homoserine lactones (AHLs), persulfide dioxygenase which catalyze the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria, flavodiiron proteins which catalyze the reduction of oxygen and/or nitric oxide to water or nitrous oxide respectively, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J which has both 5'-3' exoribonucleolytic and endonucleolytic activity and ribonuclease Z which catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors, cyclic nucleotide phosphodiesterases which decompose cyclic adenosine and guanosine 3', 5'-monophosphate (cAMP and cGMP) respectively, insecticide hydrolases, and proteins required for natural transformation competence. The diversity of biological roles is reflected in variations in the active site metallo-chemistry, for example classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, human persulfide dioxygenase ETHE1 is a mono-iron binding member of the superfamily; Arabidopsis thaliana hydroxyacylglutathione hydrolases incorporates iron, manganese, and zinc in its dinuclear metal binding site, and flavodiiron proteins contains a diiron site.	3.89273e-45
NZ_CP015622.1|WP_066563967.1|352832_353504_+|SDR-family-oxidoreductase	gnl|CDD|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	3.87004e-27
NZ_CP015622.1|WP_066563994.1|368166_369594_+|YeeE/YedE-family-protein	gnl|CDD|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	2.011e-111
NZ_CP015622.1|WP_066563975.1|356181_356547_-|DUF2304-domain-containing-protein	gnl|CDD|378376	pfam10066, DUF2304, Uncharacterized conserved protein (DUF2304). Members of this family of hypothetical archaeal proteins have no known function.	1.98208e-26
NZ_CP015622.1|WP_066563981.1|363890_364739_+|helix-turn-helix-domain-containing-protein	gnl|CDD|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	1.26414e-20
NZ_CP015622.1|WP_066563979.1|359589_361641_+|bifunctional-metallophosphatase/5'-nucleotidase	gnl|CDD|223808	COG0737, UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism].	4.52432e-99
NZ_CP015622.1|WP_066563978.1|358394_359432_+|glycosyltransferase-family-2-protein	gnl|CDD|224137	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only].	2.34559e-50
NZ_CP015622.1|WP_066564007.1|373602_375621_-|S9-family-peptidase	gnl|CDD|224422	COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism].	0
NZ_CP015622.1|WP_066563988.1|365600_366953_-|sugar-nucleotide-binding-protein	gnl|CDD|224016	COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane].	1.01775e-95
NZ_CP015622.1|WP_066563991.1|366952_367972_-|dTDP-glucose-4,6-dehydratase	gnl|CDD|224013	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].	0
NZ_CP015622.1|WP_066569384.1|356543_357254_-|glycosyltransferase-family-2-protein	gnl|CDD|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	3.36521e-44

Protein sequences

>NZ_CP015622.1|WP_066563979.1|359589_361641_+|bifunctional-metallophosphatase/5'-nucleotidase
MKRLSRAALAVVATTAVSFGVIAAPASAQENNVELNILGVTDFHGHIEQNLEDGEMGASGLACYVASERAANPNTSFVTVGDNIGGSPFVSSILRDAPTLAALSAMGVDASALGNHEFDQGYEDLVNRVSLDGTGSAKFPYLGANVEGGDPAPAKSEIVELDGVKIAYVGAVTEETATLVSPAGIEGITFTGDIEAINAEADRVIEAGDADVVIALIHAEAAPTDPFSNNVDVVFSGHTHFPYVESGAARGDKQPLVVIQGHEYGKVVSDVEISYDREAGKITNIEARNVSAADVIAGCETPNEAVDAIVEAAVGAAEEAGNEVVTTIENGFYRGANEEGATGSNRGVESSLSNLIAEAGLWAVNDATNLNADIGIMNAGGVRADLEAGEVTFAEAYATQNFSNTYGARDLTGAQFKKALEQQWKETGDRPRLALGLSNNVQYSYDETREYGDRITHITINGAPMDMDASYRITGSSFLIAGGDSFTAFAEGGPIAESGFVDIDLFNRYISAHSDVEVRANQSSVGINLSGAGLAEDGTLIAGEELTVDLSSLSYTGPEAKPTSVKVTVGSESKTAEVDTTIVPQIDSTGTASVTLTVPAGATSVDIETDNGTTFSLPVTVEGDDNGNGDDNADDQASGSSAGSLVAVLGVLGALGGLLGFFLNSAQGAPFMAQLQATLAQFM
>NZ_CP015622.1|WP_066563978.1|358394_359432_+|glycosyltransferase-family-2-protein
MSNKRIGVVIVSYGHEQDVANLVDTFADQLKDGDRVVVVDNRKPWVLKDAVGDRLEKHGVEIIDHDNGGFAAGCNVGAARIVDDVDLLFFLNPDTVIDDPTLFNSLRRVDEQWAAFMPYLLLPDGTVNSAGNALHISGLSWVTGLDEKPVEGEAEVTDISIASGACLAVRVDWWKRLGGMEEMYFMYHEDTDFSARLLLAGGRIGLLHSAYVTHHYDYAKGDYKWIYIERNRHVLLLSVLPLPLLLVLLPQILGANLGLWAIAAKENRVGLKMKSLRLLLRDAPAIFKLRSRTQKLAELTPSQYLSKMEWRLDNPNLGDIGSNKIVATVYGTYYKVCMSILKLLA
>NZ_CP015622.1|WP_066563976.1|357333_358356_+|hypothetical-protein
MKSLDLEQLAGTQSRTYQSRKITDDMIARPVHVAIALWEVPWESADSGKIEGWVIAVDAPRGRFVRSGQTKNGDVVSRTVSMLKAALKGVRGKAWLVTGRRQAALRAELVRQNYLVTGSFAEQNRAGVKASAISRRAEQAALYKAKKIGEFAERAPRVKERQEAHWWPQFARAEGALGVLRLATDASTDGVFRGAMCFVASNGDYLLDTRDTTASSDELELESITHALRYLKKIGASQARIESDSKAALEAIDFILATTPRRGRWRGITARARNHFKEAWEELEGACTVELSRVLGHAGDPLNQAADQIAYMGMRAVIFEQKSAHPTLLKGIEKALHKAG
>NZ_CP015622.1|WP_066569384.1|356543_357254_-|glycosyltransferase-family-2-protein
MDASQNSDFKDTWLVVPCYNEGTVIREVLENALKTFPNIVAVNDGSPDNSAEEIHAAGAHLVNHPVNLGQGAAIQTGIEYARAQPGAKYFVTFDADGQHQVKDVVKMVSRLRAEDADIIVGTRFGRPRQEGDQVPMIKRIVLRIVVMLSPKTRKLGLTDAHNGLRVFNQKVAQEINIRMNGMSHASEIVDQISERGWRISEEPVDILYTEYSMSKGQSLINGVNILADGFLARRLP
>NZ_CP015622.1|WP_066563975.1|356181_356547_-|DUF2304-domain-containing-protein
MTQSTTQIIIQILLLLATAALALYFLRNRRKARAKAWVKIGFVVFIFAAVWAVIRPDDLTAIANFVGVDRGTDLMLYALVVAFMFTTLSSYVRFREQELRYSKLARAVALQNAVLPENVKD
>NZ_CP015622.1|WP_066563973.1|354832_355768_+|GDP-mannose-4,6-dehydratase
MRTVVTGGAGFIGSHLVDLLIKEGHEVVVIDNLSRGRLENLTDAFETGKLTFVEADLLEVDFNEFLGQFTPEVIFHLAAQIDVRHSVVDPLHDAETNILSTIRIADAARQHGVRKVVFTSSGGSIYGEPSEFPVSEAVPVDPHSPYAASKVSGEIYLNTFRHLYGLDCSHIAPANVYGPRQDPHGEAGVVAIFAQRLLDGSDTKVFGDGGNTRDYVYVGDVVRAFYLASGEIGGGERFNIGTSVETSDRQLHALVATAAASKDDPECAPARLGDVPRSALSFAKAKKVLGWEPEVDIAQGVANTVEYFRTH
>NZ_CP015622.1|WP_066563970.1|353599_354811_+|MFS-transporter
MSDMVENKRAQHKVWLTVALSIFTVAWGGNEFTPLLVFYRGEGFFSDLFIDMLLVFYAIGVAVGLLAAGPLSDRYGRRAVMLPAPLLAMLGSTLIATGEEMAPLIGLGRVFSGIAVGMVMTAGGAWIKELATPRFEPGVKPSAGAKRASMSLTGGFALGPAVAGVMAQWLPLPGQLAYIVHIVLTLVLLPLLFTAPETRQSAHLKTKGSFWADVLVPSALSPRFLFVVAPVGPWVFGAAFTAYAILPTLLRDMVAAPIAYSALIALITLGTGFGIQQFGPQIMGTSKTRGPILAMVATVVGMVGAVIVSLHPHPWWALLVCMFLGLSYGLCMFIGLAETQNIAPPVDMAGLTGIFYCLAYSGMVFPAIMTWLNQWLSYPIMLGFGAAMATLCLLIVSFSTRKV
>NZ_CP015622.1|WP_066563967.1|352832_353504_+|SDR-family-oxidoreductase
MDLKLHGQVILVVGGAGTIGAQVVKLLTEEGAVALAASRSTPLSLDASDEASVRAAIDAVIAEHGRLDGVVVSSAPNAHSLRPETADDPDAVLAAIDGKAITFLRVATVALEKMCEAGYGRIVALSGMNSYLTLSTAASARNAALNVVVKNLADRHAGTGITVNAISPGFVVTEPGAPIDRAQGDTSLAEVAEAIAFLVSPRTASISGEIISVGHKTKGVILP
>NZ_CP015622.1|WP_066563964.1|352168_352804_+|MBL-fold-metallo-hydrolase
MAHEGLRVENIVTSGIFALDGGEWEVDNNIWLVGNDEEVFIIDAAHTAAPIIEAVNGRTVKGILCSHAHNDHITVAPELSKAFDAPIFVHPGDQMLWEETHGNLAHEDLADQQKFQIAGTDLIVFNTPGHSPGSSCFYLPEANELFSGDTLFQGGPGATGRKYSSFDTIIESLKTSILDLPAETTVRTGHGDHTSVGAEAPHLEEWIKRGH
>NZ_CP015622.1|WP_066563962.1|351060_352167_+|S-(hydroxymethyl)mycothiol-dehydrogenase
MSTVVPGIVALSKGAPVEKVNVVVPDPGANDVIVKIQACGVCHTDLAYRDGDISDEFPYLLGHEAAGIVEEVGESVTHVAVGDFVVLNWRAVCGECRACKKGEPKYCFNTHNASKKMTLEDGTELSPALGIGAFIEKTLVHEGQCTKVNPAEDPAAAGLLGCGIMAGLGAAVNTGEIQRGESVAVFGLGGVGMAAIAGAKLAGASKIIAVDIDPKKLDWAKEFGATDVIDSSQLGGEGDASEVVAKIRELTGGFGTDVSIDAVGIMPTWQQAFYSRDHAGRMVMVGVPNLTSRVDVPAIDFYGRGGSVRPAWYGDCLPERDFPTYVDLHLQGRFPLDKFVSERIGLDDVEEAFGTMKAGDVLRSVVEI
>NZ_CP015622.1|WP_066569387.1|362753_363815_-|NAD(P)-dependent-alcohol-dehydrogenase
MSIPVKALQKTGPDAPFEVKIIERRDPRADDVVIDIKAAGICHSDIHTIRNEWGEAHFPLTVGHEIAGVVSAVGTGVTKWKVGDRVGVGCMVNSCGECEQCVAGFENYCLRGNVGTYNSDDVDGSITQGGYAEKVVVNERFLCSIPEEIDFAVAAPLLCAGITSYSPIARWNVKEGDKVAVMGLGGLGHMGVQIAAAKGADVTVLSRSLRKAELAKELGAARTLATADDSFFEEHAGEFDFILNTISASIPVNKYLGLLKPQGVMAVVGLPPEQQSVGFGNLISGSKVLTGSNIGGIRETQEMLDFCAQHGLGAMIETIGINDVDAAYDRVVAGDVQFRVVIDTASFAEAEAV
>NZ_CP015622.1|WP_066563981.1|363890_364739_+|helix-turn-helix-domain-containing-protein
MLELNRIIQEIEDDLEVDVDKLARRALTTEYHLRKMFGTLAGMSLAEYIRNRRLTLAAADLKAGQAVLDVAIKYGYASSEAFARAFRRFHAVNPSQARSDSIMLSSQPRLRFHIHVKGVTDLRYRIIEKEAFYLTGFHTQVQLVFKGDNQGIVDFEKSLGKDLKARLLSLNDIEPKGALSISDEIENQQAEGSTLDYWHAVATSNPSKEFESMEVPAGTWVMFESEGAFPESIQQMWADAATEWFPANPYSWAPGPQLLHTEYSEDFSTASAQLWLPITRNS
>NZ_CP015622.1|WP_066563984.1|364742_365600_-|glucose-1-phosphate-thymidylyltransferase-RfbA
MKGIILAGGSGTRLYPITKGISKQLMPIYDKPMVYYPLTTLIQAGIKDILIITTPEDSASFERLLGDGSSWGIHLSYAVQPSPDGLAQAFIIGEDFIGDDDVALVLGDNIFDGAQLGRALKQCSNPDGGIVFAYEVSDPERYGVVEFDAANKAVSIEEKPTAPKSNFAVVGLYFYDNRVVDIAKSIKPSSRGELEITSVNDAYLQQGALTVQRLDRGDVWLDTGTIDSMSEASSYVEVLQKRTGNIIGSPEVAAYREGFITAEELTVLGEELKKSGYGNYLLRAV
>NZ_CP015622.1|WP_066563988.1|365600_366953_-|sugar-nucleotide-binding-protein
MFNKELTMRTTDIDGLLIFDFPVHGDNRGWFKENWQRTKMVNLGLPDFGPVQNNMSFNATAGTTRGMHAEPWDKFISVAVGSVFGAWVDLREGSSTYGNVVTQKITPDVGVYVPRGVANGFQALEDGTLYTYLVNDHWSPDAHYANVNLDMIDWPLPITEISDKDKKHPALIDASPLPDRKVLVLGAGGQLGTALRAQFPEAEFVTRDELDITADLTDARAWKQYSTIINAAAYTAVDQAEHDRGAAWAINATAVANLAVIARENNITLVHVSSDYVFDGTASSYAETAPFSPLGVYGQSKAAGDIAAATAPRHYIVRTSWVIGDGNNFVRTMKSLDERGIAPSVVDDQIGRLSFTQDIAAGIAHLLNVGAAYGTYNLTNTGEPASWADIARAVFTDPAKVTGVSTAEYFAGKDAAPRPLNSVLELGKIEATGFTAPAWNTRLNDYLKEL
>NZ_CP015622.1|WP_066563991.1|366952_367972_-|dTDP-glucose-4,6-dehydratase
MTSLLVTGGAGFIGANFVRQTVEQHPEYTQITVLDKLTYAGNADNLKGLPESKVTLIEGDICDAELVDSLVKDHDITVHFAAESHNDNSLNDPTPFVHTNLIGTYTLLEAVRKHNKRFHHISTDEVFGDLELDDPNRFTETTAYKPSSPYSATKAGSDHLVHAWIRSFGIQATMSNCSNNYGPYQHIEKFIPRQITNILAGLTPKLYGTGEQVRDWIHVDDHNDAVHLILKEGKIGDTYIIGADNDHVNNKEVIELICELMGIGAESYEHVADRPGHDMRYAMDSTKLRTELGWEPKYTDTDSGMRKGLEQTIAWYRDNEAWWRGTKNNVEATYAQQGQ
>NZ_CP015622.1|WP_066563994.1|368166_369594_+|YeeE/YedE-family-protein
MIITGLAVGAVLGIVMQRGRFCVTGMLRDIFLQRSWRTFVGLLIVIAVHAVGIAALTSAGVITPTYDNFAPLAVIVGAFIFGFGIILSGGCASGTWYRSGEGLVGSWIALATYALSTAAMKTGILSGFTAAMSSWETELTTLPALFGVSVWWFVVPFAALTAYLTRHFMIKESKRPKIARLGNQPAWKRPLHVYTAGALIGLIGVIAWPLSAAAGRNSGLGITTPTAHTLQYITTGDESYLNWGVMLVLGILAGSFIAAKATGEFRIRVADATTSVRAVAGGTMMGVGASLAGGCTVGNGMVQTSLFSFQGWIALLFIAIGVGVAAKIFLKPAAVAKKTNAQEGTYSTEQSIANESVTSAEDRVLPVTTSQAPVSLGGVKVATGLVSLKPAVSEKLRDLGDGYYALDSLGAVCPFPLIEAKDVIKTLDSGEHLVIDFDCTQATDAIPQWCATDGHEVTDFKETGDASWQITVKKG
>NZ_CP015622.1|WP_066563997.1|369988_370630_-|hypothetical-protein
MLRNRLFFMLFALVALIGLITGLIVLMVNSQSDEEASSSTRTTVNNTMVIKALQREEEIVLLSAGAIGIHEESIERTIRGKRIPGTQKTVHIQYGYTGKLGIDASDVEIKSSGDNRFSITIPEFIFIGYDDLKFKTLAEDAGWISFSTEDIDTAAVVTEIMSPENFIAQIDTNREILEDQAANFYNDLLNEFTEKLDEELYDDTKIELDFEFE
>NZ_CP015622.1|WP_066564002.1|370832_372119_-|hypothetical-protein
MKYLTLATIIAGLSGFVVIIIAAWALGESGILTEEFTAYWGLFFAGTGVLTGLTQETTRAVTAGAAGAARSSGSAAAGVAGDSGSRGFRPFKPFLFSFGVAAVMLVVLGVSAPFWIGQLLSSLQGFGVALLAVGLASYAIQATISGILSGCQLWKEYAALISLDTGIRMVLAVIAWLLGYQLLAFLVITVVGSVSWLVIVMCFGSVRSVLGSVADVPRGTFIRQALLAMAASGATAVLITGFPTLLKFANPSAVAGGVSMAAVSYAVILTRAPLLVPLQQFQSAIIVRFVKGTSGPLKTLAGPLALVWAIGIVGAGLAWLVGPWILDVVLQKELFAVPGWLLALLTLGATTTASLMISGCAAIAFERHGIYLGGWVVATVVAVGFLLGPFDLGVAAGLALIVGPLCGLIVHMGAFIGGARRERALVGV
>NZ_CP015622.1|WP_082868770.1|372118_373606_-|M1-family-metallopeptidase
MIMRRMRSTPVPGTRDSYTGIDFNLGFHIRSYNLDLTYRVAPNLLMGTATLQMDNYQPLDFLTLDLAGSLRVEKVTAIGTAGTRIQVARFRHTDRKLRVTFRNQVPVDQEFSLVIRYRGNPRPVRSEWGMIGWEELNNGALVASQPSGAPSWFPCDDTPDEKALFDVHFHTDNGYVAVITGDLKSKQVSGSMTTWHYQSRERMATYLAAVHVGDYDTVPLGVSASGVSVDAYVPAGQFELRGRILQDFSKQVDMLDAYEKYFGPYPFSTYRVVITEDELEIPLEAHGLSSFGANHATGQGTWERLIAHELSHQWFGNSLGLAQWNDIWLNEGFACYAEWLWFESVGVKSAADSAWEFYQGLAALPQDILLSNPGPKDMFDDRVYKRGALTVHALRVLLGDAAFFKAVQAYVSEGRHALVEPRDLKRHLYEVSKDHAALDAVWNSWLKELVLPEFPGSGDSKVSEVSVETPEVTEPAQLGGGVEKPRWPWRPEFLR
>NZ_CP015622.1|WP_066564007.1|373602_375621_-|S9-family-peptidase
MTDYSFLENIDTPEALAWAEKWSGESVEKLKSSSKDKLKARLLAALDTDDRIAYVSRRGEKLYNFWRDAEHPRGVWRTTTFESYQSEQPKWDVLIDVDALAELEDENWVWKGAVVRSPQRDLALIKLSRGGADATVIREFDLVAREFVGAGAFALPEAKSNVTWIDVDTLLVGTDTGEGSLTDSGYPARALKWKRGTPIEQAEVFFEGSLQDVATHAWRDSTPGFERIFASRSVDFYNSETYLDTADGLVLLEVPTDCDVIVQRQWLFVNPRTDFAGIPAGGLGVLLLDDFLAGARDFAAVFTPTAATSLQGLATTKNFLVLTLLNNVSTEILTVPLTDPVAAPTHMELPDHVTAHVVATSALDGDEIWVQAASFTEAPTLLRAELPGALSSVKRAPLQFDNAGQETRQHWATSADGTKIPYFITGTFSTAEPRKTLVHAYGGFEVSLTPSHSPTRGIAWLEKGYFFVEANLRGGGEFGPEWHSQATKLNRMKVWEDHHAVLADLVERGYATPQQIAIRGGSNGGLLTSGALTQYPEAFGAAVVQVPLADMLRYHTWSAGASWMAEYGNPDVAEERAVIEQYSPVQKVVGVDKQVYPPALVTTSTRDDRVHPAHARLFAQALLDAGQAVDYYENTEGGHAGAADNKQSAFMESLIYTWIEKTLEQQGSIWYL

Crispr_ID: NZ_CP015622_2

• CRISPR_ID: NZ_CP015622_2
• CRISPR_location: 376543-377548
• CRISPR_type: Orphan
• Repeat_type: I-C,I-E,II-B
• Spacer_info: 16 spacers

Consensus repeat of NZ_CP015622_2

Consensus_repeat	Method
GTTTTCCCCGCATGGGCGGGGATGGTCC	PILER-CR
GTTTTCCCCGCACCCGCGGGGATGGTCC	CRISPRCasFinder
GTTTTCCCCGCACCCGCGGGGATGGTCC	CRT
GTTTTCCCCGCACCCGCGGGGATGGTCC	PILER-CR

spacers of NZ_CP015622_2

>2.1|376571|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT
CTCACCACCTGCAAAATCGCCATTCCTGATCTT
>2.2|376632|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT
GGCTGGTTTGGTAGGGGTTGTGAGTGGCCCTGT
>2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT
AAGGACGGAGCTCTACCAACTGAGCTACACACG
>2.4|376754|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT
CCAGCATCGACGCTAAAACCTGGGATTCAGAGG
>2.5|376815|33|NZ_CP015622|CRISPRCasFinder,CRT
CACACCTTCAGGTTTCGACGCCAACCACCCCTG
>2.6|376876|33|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR
GCGGCCGGTAGCTCCCACCGCGCAGTAGTCGCA
>2.7|376937|34|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR
GATACGCATCCTGCGGAGTGGGCGATGAATCAGC
>2.8|376999|33|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR
GCAAATCGTACTCAACCGCTAGACGAAAATCAT
>2.9|377060|33|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR
CACCCTGACCTGCAAGAATATTCCGCACACCCT
>2.10|377121|32|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR
GTGTTTGGGTTGACACGCTTTTTGCAATGTTT
>2.11|377181|33|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR
CTCACTGCGTGACGCGTCGAAAATCTTGCGAGC
>2.12|377242|33|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR
ACATTATGGCTCCTACGGGTTCAGGGTGAATGA
>2.13|377303|32|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR
CACGGGATCAATGCCCATCAGAACGGCATACG
>2.14|377363|34|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR
GACGCGGGACTTGCGGGCGCTCCAGGAGCTGCTT
>2.15|377425|34|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR
CGACTGACTCAAATTCAGCAGTCTTGGTGGCAGT
>2.16|377487|34|NZ_CP015622|CRISPRCasFinder,CRT
CAGATTGGGGCGAATATTGCGTTTATGCCAGCCC

CRISPR arrays and Neighbor proteins around NZ_CP015622_2

CRISPR arrays

The CRISPR arrays of NZ_CP015622_2

>merge|NZ_CP015622|2|376543-377548|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTTTTCCCCGCATGGGCGGGGATGGTCCCTCACCACCTGCAAAATCGCCATTCCTGATCTTGTTTTCCCCGCATGGGCGGGGATGGTCCGGCTGGTTTGGTAGGGGTTGTGAGTGGCCCTGTGTTTTCCCCGCATGGGCGGGGATGGTCCAAGGACGGAGCTCTACCAACTGAGCTACACACGGTTTTCCCCGCATTGGCGGGGATGGTCCCCAGCATCGACGCTAAAACCTGGGATTCAGAGGGTTTTCCCCGCATGGGCGGGGATGGTCCCACACCTTCAGGTTTCGACGCCAACCACCCCTGGTTTTCCCCGCACCCGCGGGGATGGTCCGCGGCCGGTAGCTCCCACCGCGCAGTAGTCGCAGTTTTCCCCGCACCCGCGGGGATGGTCCGATACGCATCCTGCGGAGTGGGCGATGAATCAGCGTTTTCCCCGCACCCGCGGGGATGATCCGCAAATCGTACTCAACCGCTAGACGAAAATCATGTTTTCCCCGCACCCGCGGGGATGGTCCCACCCTGACCTGCAAGAATATTCCGCACACCCTGTTTTCCCCGCACCCGCGGGGATGGTCCGTGTTTGGGTTGACACGCTTTTTGCAATGTTTGTTTTCCCCGCACCCGCGGGGATGGTCCCTCACTGCGTGACGCGTCGAAAATCTTGCGAGCGTTTTCCCCGCACCCGCGGGGATGGTCCACATTATGGCTCCTACGGGTTCAGGGTGAATGAGTTTTCCCCGCACCCGCGGGGATGGTCCCACGGGATCAATGCCCATCAGAACGGCATACGGGTTTTCCCGCACCCGCGGGGATGGTCCGACGCGGGACTTGCGGGCGCTCCAGGAGCTGCTTGTTTTCCCCGCACCCGCGGGGATGGTCCCGACTGACTCAAATTCAGCAGTCTTGGTGGCAGTGTTTTCCCCGCACCCGCGGGGATGGTCCCAGATTGGGGCGAATATTGCGTTTATGCCAGCCCGTTTTCCCCGCACCCGCGGGGATGGCCG

>NZ_CP015622|2|1|376543-376814|PILER-CR
GTTTTCCCCGCATGGGCGGGGATGGTCC	CTCACCACCTGCAAAATCGCCATTCCTGATCTT
GTTTTCCCCGCATGGGCGGGGATGGTCC	GGCTGGTTTGGTAGGGGTTGTGAGTGGCCCTGT
GTTTTCCCCGCATGGGCGGGGATGGTCC	AAGGACGGAGCTCTACCAACTGAGCTACACACG
GTTTTCCCCGCATTGGCGGGGATGGTCC	CCAGCATCGACGCTAAAACCTGGGATTCAGAGG
GTTTTCCCCGCATGGGCGGGGATGGTCCCACACCTTCAGGTTTCGACGCCAACCACCCCTGGTTTTCCCCGCACCCGCGGGGATGGTCC	GCGGCCGGTAGCTCCCACCGCGCAGTAGTCGCA
GTTTTCCCCGCACCCGCGGGGATGGTCC	GATACGCATCCTGCGGAGTGGGCGATGAATCAGC
GTTTTCCCCGCACCCGCGGGGATGATCC	GCAAATCGTACTCAACCGCTAGACGAAAATCAT
GTTTTCCCCGCACCCGCGGGGATGGTCC	CACCCTGACCTGCAAGAATATTCCGCACACCCT
GTTTTCCCCGCACCCGCGGGGATGGTCC	GTGTTTGGGTTGACACGCTTTTTGCAATGTTT
GTTTTCCCCGCACCCGCGGGGATGGTCC	CTCACTGCGTGACGCGTCGAAAATCTTGCGAGC
GTTTTCCCCGCACCCGCGGGGATGGTCC	ACATTATGGCTCCTACGGGTTCAGGGTGAATGA
GTTTTCCCCGCACCCGCGGGGATGGTCC	CACGGGATCAATGCCCATCAGAACGGCATACG
GGTTTTCCCGCACCCGCGGGGATGGTCC	GACGCGGGACTTGCGGGCGCTCCAGGAGCTGCTT
GTTTTCCCCGCACCCGCGGGGATGGTCC	CGACTGACTCAAATTCAGCAGTCTTGGTGGCAGT


>NZ_CP015622|2|2|376543-377548|CRISPRCasFinder
GTTTTCCCCGCATGGGCGGGGATGGTCC	CTCACCACCTGCAAAATCGCCATTCCTGATCTT
GTTTTCCCCGCATGGGCGGGGATGGTCC	GGCTGGTTTGGTAGGGGTTGTGAGTGGCCCTGT
GTTTTCCCCGCATGGGCGGGGATGGTCC	AAGGACGGAGCTCTACCAACTGAGCTACACACG
GTTTTCCCCGCATTGGCGGGGATGGTCC	CCAGCATCGACGCTAAAACCTGGGATTCAGAGG
GTTTTCCCCGCATGGGCGGGGATGGTCC	CACACCTTCAGGTTTCGACGCCAACCACCCCTG
GTTTTCCCCGCACCCGCGGGGATGGTCC	GCGGCCGGTAGCTCCCACCGCGCAGTAGTCGCA
GTTTTCCCCGCACCCGCGGGGATGGTCC	GATACGCATCCTGCGGAGTGGGCGATGAATCAGC
GTTTTCCCCGCACCCGCGGGGATGATCC	GCAAATCGTACTCAACCGCTAGACGAAAATCAT
GTTTTCCCCGCACCCGCGGGGATGGTCC	CACCCTGACCTGCAAGAATATTCCGCACACCCT
GTTTTCCCCGCACCCGCGGGGATGGTCC	GTGTTTGGGTTGACACGCTTTTTGCAATGTTT
GTTTTCCCCGCACCCGCGGGGATGGTCC	CTCACTGCGTGACGCGTCGAAAATCTTGCGAGC
GTTTTCCCCGCACCCGCGGGGATGGTCC	ACATTATGGCTCCTACGGGTTCAGGGTGAATGA
GTTTTCCCCGCACCCGCGGGGATGGTCC	CACGGGATCAATGCCCATCAGAACGGCATACG
GGTTTTCCCGCACCCGCGGGGATGGTCC	GACGCGGGACTTGCGGGCGCTCCAGGAGCTGCTT
GTTTTCCCCGCACCCGCGGGGATGGTCC	CGACTGACTCAAATTCAGCAGTCTTGGTGGCAGT
GTTTTCCCCGCACCCGCGGGGATGGTCC	CAGATTGGGGCGAATATTGCGTTTATGCCAGCCC
GTTTTCCCCGCACCCGCGGGGATGGCCG

>NZ_CP015622|2|1|376543-377548|CRT
GTTTTCCCCGCATGGGCGGGGATGGTCC	CTCACCACCTGCAAAATCGCCATTCCTGATCTT
GTTTTCCCCGCATGGGCGGGGATGGTCC	GGCTGGTTTGGTAGGGGTTGTGAGTGGCCCTGT
GTTTTCCCCGCATGGGCGGGGATGGTCC	AAGGACGGAGCTCTACCAACTGAGCTACACACG
GTTTTCCCCGCATTGGCGGGGATGGTCC	CCAGCATCGACGCTAAAACCTGGGATTCAGAGG
GTTTTCCCCGCATGGGCGGGGATGGTCC	CACACCTTCAGGTTTCGACGCCAACCACCCCTG
GTTTTCCCCGCACCCGCGGGGATGGTCC	GCGGCCGGTAGCTCCCACCGCGCAGTAGTCGCA
GTTTTCCCCGCACCCGCGGGGATGGTCC	GATACGCATCCTGCGGAGTGGGCGATGAATCAGC
GTTTTCCCCGCACCCGCGGGGATGATCC	GCAAATCGTACTCAACCGCTAGACGAAAATCAT
GTTTTCCCCGCACCCGCGGGGATGGTCC	CACCCTGACCTGCAAGAATATTCCGCACACCCT
GTTTTCCCCGCACCCGCGGGGATGGTCC	GTGTTTGGGTTGACACGCTTTTTGCAATGTTT
GTTTTCCCCGCACCCGCGGGGATGGTCC	CTCACTGCGTGACGCGTCGAAAATCTTGCGAGC
GTTTTCCCCGCACCCGCGGGGATGGTCC	ACATTATGGCTCCTACGGGTTCAGGGTGAATGA
GTTTTCCCCGCACCCGCGGGGATGGTCC	CACGGGATCAATGCCCATCAGAACGGCATACG
GGTTTTCCCGCACCCGCGGGGATGGTCC	GACGCGGGACTTGCGGGCGCTCCAGGAGCTGCTT
GTTTTCCCCGCACCCGCGGGGATGGTCC	CGACTGACTCAAATTCAGCAGTCTTGGTGGCAGT
GTTTTCCCCGCACCCGCGGGGATGGTCC	CAGATTGGGGCGAATATTGCGTTTATGCCAGCCC
GTTTTCCCCGCACCCGCGGGGATGGCCG

>NZ_CP015622|2|2|376848-377486|PILER-CR
	CTCACCACCTGCAAAATCGCCATTCCTGATCTT
GTTTTCCCCGCATGGGCGGGGATGGTCC	GGCTGGTTTGGTAGGGGTTGTGAGTGGCCCTGT
GTTTTCCCCGCATGGGCGGGGATGGTCC	AAGGACGGAGCTCTACCAACTGAGCTACACACG
GTTTTCCCCGCATTGGCGGGGATGGTCC	CCAGCATCGACGCTAAAACCTGGGATTCAGAGG
GTTTTCCCCGCATGGGCGGGGATGGTCCCACACCTTCAGGTTTCGACGCCAACCACCCCTGGTTTTCCCCGCACCCGCGGGGATGGTCC	GCGGCCGGTAGCTCCCACCGCGCAGTAGTCGCA
GTTTTCCCCGCACCCGCGGGGATGGTCC	GATACGCATCCTGCGGAGTGGGCGATGAATCAGC
GTTTTCCCCGCACCCGCGGGGATGATCC	GCAAATCGTACTCAACCGCTAGACGAAAATCAT
GTTTTCCCCGCACCCGCGGGGATGGTCC	CACCCTGACCTGCAAGAATATTCCGCACACCCT
GTTTTCCCCGCACCCGCGGGGATGGTCC	GTGTTTGGGTTGACACGCTTTTTGCAATGTTT
GTTTTCCCCGCACCCGCGGGGATGGTCC	CTCACTGCGTGACGCGTCGAAAATCTTGCGAGC
GTTTTCCCCGCACCCGCGGGGATGGTCC	ACATTATGGCTCCTACGGGTTCAGGGTGAATGA
GTTTTCCCCGCACCCGCGGGGATGGTCC	CACGGGATCAATGCCCATCAGAACGGCATACG
GGTTTTCCCGCACCCGCGGGGATGGTCC	GACGCGGGACTTGCGGGCGCTCCAGGAGCTGCTT
GTTTTCCCCGCACCCGCGGGGATGGTCC	CGACTGACTCAAATTCAGCAGTCTTGGTGGCAGT
GTTTTCCCCGCACCCGCGGGGATGGTCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015622.1|WP_082868770.1|372118_373606_-|M1-family-metallopeptidase	unknown	unknown	gnl|CDD|341066
NZ_CP015622.1|WP_066563984.1|364742_365600_-|glucose-1-phosphate-thymidylyltransferase-RfbA	unknown	unknown	gnl|CDD|130274
NZ_CP015622.1|WP_066564031.1|383774_384296_-|excalibur-calcium-binding-domain-containing-protein	unknown	unknown	gnl|CDD|377566
NZ_CP015622.1|WP_066564036.1|387182_388277_-|FUSC-family-protein	unknown	unknown	gnl|CDD|226614
NZ_CP015622.1|WP_066564029.1|383262_383595_+|DUF202-domain-containing-protein	unknown	unknown	gnl|CDD|376882
NZ_CP015622.1|WP_074025361.1|377664_378630_-|LysR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|176104
NZ_CP015622.1|WP_066563991.1|366952_367972_-|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl|CDD|224013
NZ_CP015622.1|WP_066564024.1|381320_382853_+|tripartite-tricarboxylate-transporter-permease	unknown	unknown	gnl|CDD|225870
NZ_CP015622.1|WP_157776001.1|379775_380729_+|hypothetical-protein	unknown	unknown	gnl|CDD|270234
NZ_CP015622.1|WP_066563981.1|363890_364739_+|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl|CDD|197666
NZ_CP015622.1|WP_066563997.1|369988_370630_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015622.1|WP_066564027.1|382869_383256_+|DUF202-domain-containing-protein	unknown	unknown	gnl|CDD|225060
NZ_CP015622.1|WP_066564033.1|384659_385148_-|CAP-domain-containing-protein	unknown	unknown	gnl|CDD|349398
NZ_CP015622.1|WP_157776000.1|375731_376208_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015622.1|WP_066563994.1|368166_369594_+|YeeE/YedE-family-protein	unknown	unknown	gnl|CDD|377230
NZ_CP015622.1|WP_066564015.1|378739_379783_+|MBL-fold-metallo-hydrolase	unknown	unknown	gnl|CDD|293805
NZ_CP015622.1|WP_066564021.1|380725_381292_+|tripartite-tricarboxylate-transporter-TctB-family-protein	unknown	unknown	gnl|CDD|377815
NZ_CP015622.1|WP_066564002.1|370832_372119_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015622.1|WP_066564007.1|373602_375621_-|S9-family-peptidase	unknown	unknown	gnl|CDD|224422
NZ_CP015622.1|WP_066563988.1|365600_366953_-|sugar-nucleotide-binding-protein	unknown	unknown	gnl|CDD|224016

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP015622.1|WP_082868770.1|372118_373606_-|M1-family-metallopeptidase	gnl|CDD|341066	cd09603, M1_APN_like, Peptidase M1 family similar to aminopeptidase N catalytic domain. This family contains mostly bacterial and some archaeal M1 peptidases with smilarity to the catalytic domain of aminopeptidase N (APN; CD13; alanyl aminopeptidase; EC 3.4.11.2), a type II integral membrane protease belonging to the M1 gluzincin family. APN preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and, in higher eukaryotes, is present in a variety of human tissues and cell types (leukocyte, fibroblast, endothelial and epithelial cells). APN expression is dysregulated in inflammatory diseases such as chronic pain, rheumatoid arthritis, multiple sclerosis, systemic sclerosis, systemic lupus erythematosus, polymyositis/dermatomyosytis and pulmonary sarcoidosis, and is enhanced in tumor cells such as melanoma, renal, prostate, pancreas, colon, gastric and thyroid cancers. It is predominantly expressed on stem cells and on cells of the granulocytic and monocytic lineages at distinct stages of differentiation, thus considered a marker of differentiation. Thus, APN inhibition may lead to the development of anti-cancer and anti-inflammatory drugs. APNs are also present in many pathogenic bacteria and represent potential drug targets. Some APNs have been used commercially, such as one from Lactococcus lactis used in the food industry. APN also serves as a receptor for coronaviruses, although the virus receptor interaction site seems to be distinct from the enzymatic site and aminopeptidase activity is not necessary for viral infection. APNs have also been extensively studied as putative Cry toxin receptors. Cry1 proteins are pore-forming toxins that bind to the midgut epithelial cell membrane of susceptible insect larvae, causing extensive damage. Several different toxins, including Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have been shown to bind to APNs; however, a direct role of APN in cytotoxicity has been yet to be firmly established.	1.21072e-145
NZ_CP015622.1|WP_066563984.1|364742_365600_-|glucose-1-phosphate-thymidylyltransferase-RfbA	gnl|CDD|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	8.78811e-163
NZ_CP015622.1|WP_066564031.1|383774_384296_-|excalibur-calcium-binding-domain-containing-protein	gnl|CDD|377566	pfam05901, Excalibur, Excalibur calcium-binding domain. Extracellular Ca2+-dependent nuclease YokF from Bacillus subtilis and several other surface-exposed proteins from diverse bacteria are encoded in the genomes in two paralogous forms that differ by a ~45 amino acid fragment, which comprises a novel conserved domain. Sequence analysis of this domain revealed a conserved DxDxDGxxCE motif, which is strikingly similar to the Ca2+-binding loop of the calmodulin-like EF-hand domains, suggesting an evolutionary relationship between them. Functions of many of the other proteins in which the novel domain, named Excalibur (extracellular calcium-binding region), is found, as well as a structural model of its conserved motif are consistent with the notion that the Excalibur domain binds calcium. This domain is but one more example of the diversity of structural contexts surrounding the EF-hand-like calcium-binding loop in bacteria. This loop is thus more widespread than hitherto recognized and the evolution of EF-hand-like domains is probably more complex than previously appreciated.	1.06482e-15
NZ_CP015622.1|WP_066564036.1|387182_388277_-|FUSC-family-protein	gnl|CDD|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	4.1704e-19
NZ_CP015622.1|WP_066564029.1|383262_383595_+|DUF202-domain-containing-protein	gnl|CDD|376882	pfam02656, DUF202, Domain of unknown function (DUF202). This family consists of hypothetical proteins some of which are putative membrane proteins. No functional information or experimental verification of function is known. This domain is around 100 amino acids long.	3.84502e-09
NZ_CP015622.1|WP_074025361.1|377664_378630_-|LysR-family-transcriptional-regulator	gnl|CDD|176104	cd08412, PBP2_PAO1_like, The C-terminal substrate-binding domain of putative LysR-type transcriptional regulator PAO1-like, a member of the type 2 periplasmic binding fold protein superfamily. This family includes the C-terminal substrate domain of a putative LysR-type transcriptional regulator from the plant pathogen Pseudomonas aeruginosa PAO1and its closely related homologs. The LysR-type transcriptional regulators (LTTRs) are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of N2 fixing bacteria, and synthesis of virulence factors, to a name a few. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	2.39619e-40
NZ_CP015622.1|WP_066563991.1|366952_367972_-|dTDP-glucose-4,6-dehydratase	gnl|CDD|224013	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].	0
NZ_CP015622.1|WP_066564024.1|381320_382853_+|tripartite-tricarboxylate-transporter-permease	gnl|CDD|225870	COG3333, COG3333, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP015622.1|WP_157776001.1|379775_380729_+|hypothetical-protein	gnl|CDD|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	3.43576e-78
NZ_CP015622.1|WP_066563981.1|363890_364739_+|helix-turn-helix-domain-containing-protein	gnl|CDD|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	1.26414e-20
NZ_CP015622.1|WP_066564027.1|382869_383256_+|DUF202-domain-containing-protein	gnl|CDD|225060	COG2149, COG2149, Predicted membrane protein [Function unknown].	4.77662e-36
NZ_CP015622.1|WP_066564033.1|384659_385148_-|CAP-domain-containing-protein	gnl|CDD|349398	cd05379, CAP_bacterial, Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins. Little is known about bacterial and archaeal members of the CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain family. The wider family of CAP domain containing proteins includes plant pathogenesis-related protein 1 (PR-1), cysteine-rich secretory proteins (CRISPs), and allergen 5 from vespid venom, among others. Studies of eukaryotic proteins show that CAP domains have several functions, including the binding of cholesterol, lipids and heparan sulfate. This group includes Borrelia burgdorferi outer surface protein BB0689, which does not bind to cholesterol, lipids, or heparan sulfate, and whose function is unknown.	9.12059e-22
NZ_CP015622.1|WP_066564021.1|380725_381292_+|tripartite-tricarboxylate-transporter-TctB-family-protein	gnl|CDD|377815	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family. This family consists of several hypothetical bacterial proteins of around 150 residues in length. This family was formerly known as DUF1468.	5.20255e-05
NZ_CP015622.1|WP_066563994.1|368166_369594_+|YeeE/YedE-family-protein	gnl|CDD|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	2.011e-111
NZ_CP015622.1|WP_066564015.1|378739_379783_+|MBL-fold-metallo-hydrolase	gnl|CDD|293805	cd07719, arylsulfatase_AtsA-like_MBL-fold, Pseudoalteromonas carrageenovora arylsulfatase AtsA and related proteins; MBL-fold metallo-hydrolase domain. Arylsulfatase (also known as aryl-sulfate sulfohydrolase, EC 3.1.6.1). Pseudoalteromonas carrageenovora arylsulfatase AtsA may function as a glycosulfohydrolase involved with desulfation of sulfated polysaccharides, which catalyzes hydrolysis of the arylsulfate ester bond, producing the aryl compounds and inorganic sulfate. CD also includes some sequences annotated as ribonucleases. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily.	1.79818e-61
NZ_CP015622.1|WP_066563988.1|365600_366953_-|sugar-nucleotide-binding-protein	gnl|CDD|224016	COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane].	1.01775e-95
NZ_CP015622.1|WP_066564007.1|373602_375621_-|S9-family-peptidase	gnl|CDD|224422	COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism].	0

Protein sequences

>NZ_CP015622.1|WP_157776000.1|375731_376208_-|hypothetical-protein
MQKLLYKSLAIAVTSVLLFPASATQAQSSFVSSSSSSETEAPPAKDAKATHLENLLNELMTQGGMTATAEVEGIAKDHLDRAMNDELPLFEGMSYNEDYDSTSISVSVFPTENIDFEIAQAQSMLQGVENSASSEPAQFSALVDTDGENYYTAMVFIF
>NZ_CP015622.1|WP_066564007.1|373602_375621_-|S9-family-peptidase
MTDYSFLENIDTPEALAWAEKWSGESVEKLKSSSKDKLKARLLAALDTDDRIAYVSRRGEKLYNFWRDAEHPRGVWRTTTFESYQSEQPKWDVLIDVDALAELEDENWVWKGAVVRSPQRDLALIKLSRGGADATVIREFDLVAREFVGAGAFALPEAKSNVTWIDVDTLLVGTDTGEGSLTDSGYPARALKWKRGTPIEQAEVFFEGSLQDVATHAWRDSTPGFERIFASRSVDFYNSETYLDTADGLVLLEVPTDCDVIVQRQWLFVNPRTDFAGIPAGGLGVLLLDDFLAGARDFAAVFTPTAATSLQGLATTKNFLVLTLLNNVSTEILTVPLTDPVAAPTHMELPDHVTAHVVATSALDGDEIWVQAASFTEAPTLLRAELPGALSSVKRAPLQFDNAGQETRQHWATSADGTKIPYFITGTFSTAEPRKTLVHAYGGFEVSLTPSHSPTRGIAWLEKGYFFVEANLRGGGEFGPEWHSQATKLNRMKVWEDHHAVLADLVERGYATPQQIAIRGGSNGGLLTSGALTQYPEAFGAAVVQVPLADMLRYHTWSAGASWMAEYGNPDVAEERAVIEQYSPVQKVVGVDKQVYPPALVTTSTRDDRVHPAHARLFAQALLDAGQAVDYYENTEGGHAGAADNKQSAFMESLIYTWIEKTLEQQGSIWYL
>NZ_CP015622.1|WP_082868770.1|372118_373606_-|M1-family-metallopeptidase
MIMRRMRSTPVPGTRDSYTGIDFNLGFHIRSYNLDLTYRVAPNLLMGTATLQMDNYQPLDFLTLDLAGSLRVEKVTAIGTAGTRIQVARFRHTDRKLRVTFRNQVPVDQEFSLVIRYRGNPRPVRSEWGMIGWEELNNGALVASQPSGAPSWFPCDDTPDEKALFDVHFHTDNGYVAVITGDLKSKQVSGSMTTWHYQSRERMATYLAAVHVGDYDTVPLGVSASGVSVDAYVPAGQFELRGRILQDFSKQVDMLDAYEKYFGPYPFSTYRVVITEDELEIPLEAHGLSSFGANHATGQGTWERLIAHELSHQWFGNSLGLAQWNDIWLNEGFACYAEWLWFESVGVKSAADSAWEFYQGLAALPQDILLSNPGPKDMFDDRVYKRGALTVHALRVLLGDAAFFKAVQAYVSEGRHALVEPRDLKRHLYEVSKDHAALDAVWNSWLKELVLPEFPGSGDSKVSEVSVETPEVTEPAQLGGGVEKPRWPWRPEFLR
>NZ_CP015622.1|WP_066564002.1|370832_372119_-|hypothetical-protein
MKYLTLATIIAGLSGFVVIIIAAWALGESGILTEEFTAYWGLFFAGTGVLTGLTQETTRAVTAGAAGAARSSGSAAAGVAGDSGSRGFRPFKPFLFSFGVAAVMLVVLGVSAPFWIGQLLSSLQGFGVALLAVGLASYAIQATISGILSGCQLWKEYAALISLDTGIRMVLAVIAWLLGYQLLAFLVITVVGSVSWLVIVMCFGSVRSVLGSVADVPRGTFIRQALLAMAASGATAVLITGFPTLLKFANPSAVAGGVSMAAVSYAVILTRAPLLVPLQQFQSAIIVRFVKGTSGPLKTLAGPLALVWAIGIVGAGLAWLVGPWILDVVLQKELFAVPGWLLALLTLGATTTASLMISGCAAIAFERHGIYLGGWVVATVVAVGFLLGPFDLGVAAGLALIVGPLCGLIVHMGAFIGGARRERALVGV
>NZ_CP015622.1|WP_066563997.1|369988_370630_-|hypothetical-protein
MLRNRLFFMLFALVALIGLITGLIVLMVNSQSDEEASSSTRTTVNNTMVIKALQREEEIVLLSAGAIGIHEESIERTIRGKRIPGTQKTVHIQYGYTGKLGIDASDVEIKSSGDNRFSITIPEFIFIGYDDLKFKTLAEDAGWISFSTEDIDTAAVVTEIMSPENFIAQIDTNREILEDQAANFYNDLLNEFTEKLDEELYDDTKIELDFEFE
>NZ_CP015622.1|WP_066563994.1|368166_369594_+|YeeE/YedE-family-protein
MIITGLAVGAVLGIVMQRGRFCVTGMLRDIFLQRSWRTFVGLLIVIAVHAVGIAALTSAGVITPTYDNFAPLAVIVGAFIFGFGIILSGGCASGTWYRSGEGLVGSWIALATYALSTAAMKTGILSGFTAAMSSWETELTTLPALFGVSVWWFVVPFAALTAYLTRHFMIKESKRPKIARLGNQPAWKRPLHVYTAGALIGLIGVIAWPLSAAAGRNSGLGITTPTAHTLQYITTGDESYLNWGVMLVLGILAGSFIAAKATGEFRIRVADATTSVRAVAGGTMMGVGASLAGGCTVGNGMVQTSLFSFQGWIALLFIAIGVGVAAKIFLKPAAVAKKTNAQEGTYSTEQSIANESVTSAEDRVLPVTTSQAPVSLGGVKVATGLVSLKPAVSEKLRDLGDGYYALDSLGAVCPFPLIEAKDVIKTLDSGEHLVIDFDCTQATDAIPQWCATDGHEVTDFKETGDASWQITVKKG
>NZ_CP015622.1|WP_066563991.1|366952_367972_-|dTDP-glucose-4,6-dehydratase
MTSLLVTGGAGFIGANFVRQTVEQHPEYTQITVLDKLTYAGNADNLKGLPESKVTLIEGDICDAELVDSLVKDHDITVHFAAESHNDNSLNDPTPFVHTNLIGTYTLLEAVRKHNKRFHHISTDEVFGDLELDDPNRFTETTAYKPSSPYSATKAGSDHLVHAWIRSFGIQATMSNCSNNYGPYQHIEKFIPRQITNILAGLTPKLYGTGEQVRDWIHVDDHNDAVHLILKEGKIGDTYIIGADNDHVNNKEVIELICELMGIGAESYEHVADRPGHDMRYAMDSTKLRTELGWEPKYTDTDSGMRKGLEQTIAWYRDNEAWWRGTKNNVEATYAQQGQ
>NZ_CP015622.1|WP_066563988.1|365600_366953_-|sugar-nucleotide-binding-protein
MFNKELTMRTTDIDGLLIFDFPVHGDNRGWFKENWQRTKMVNLGLPDFGPVQNNMSFNATAGTTRGMHAEPWDKFISVAVGSVFGAWVDLREGSSTYGNVVTQKITPDVGVYVPRGVANGFQALEDGTLYTYLVNDHWSPDAHYANVNLDMIDWPLPITEISDKDKKHPALIDASPLPDRKVLVLGAGGQLGTALRAQFPEAEFVTRDELDITADLTDARAWKQYSTIINAAAYTAVDQAEHDRGAAWAINATAVANLAVIARENNITLVHVSSDYVFDGTASSYAETAPFSPLGVYGQSKAAGDIAAATAPRHYIVRTSWVIGDGNNFVRTMKSLDERGIAPSVVDDQIGRLSFTQDIAAGIAHLLNVGAAYGTYNLTNTGEPASWADIARAVFTDPAKVTGVSTAEYFAGKDAAPRPLNSVLELGKIEATGFTAPAWNTRLNDYLKEL
>NZ_CP015622.1|WP_066563984.1|364742_365600_-|glucose-1-phosphate-thymidylyltransferase-RfbA
MKGIILAGGSGTRLYPITKGISKQLMPIYDKPMVYYPLTTLIQAGIKDILIITTPEDSASFERLLGDGSSWGIHLSYAVQPSPDGLAQAFIIGEDFIGDDDVALVLGDNIFDGAQLGRALKQCSNPDGGIVFAYEVSDPERYGVVEFDAANKAVSIEEKPTAPKSNFAVVGLYFYDNRVVDIAKSIKPSSRGELEITSVNDAYLQQGALTVQRLDRGDVWLDTGTIDSMSEASSYVEVLQKRTGNIIGSPEVAAYREGFITAEELTVLGEELKKSGYGNYLLRAV
>NZ_CP015622.1|WP_066563981.1|363890_364739_+|helix-turn-helix-domain-containing-protein
MLELNRIIQEIEDDLEVDVDKLARRALTTEYHLRKMFGTLAGMSLAEYIRNRRLTLAAADLKAGQAVLDVAIKYGYASSEAFARAFRRFHAVNPSQARSDSIMLSSQPRLRFHIHVKGVTDLRYRIIEKEAFYLTGFHTQVQLVFKGDNQGIVDFEKSLGKDLKARLLSLNDIEPKGALSISDEIENQQAEGSTLDYWHAVATSNPSKEFESMEVPAGTWVMFESEGAFPESIQQMWADAATEWFPANPYSWAPGPQLLHTEYSEDFSTASAQLWLPITRNS
>NZ_CP015622.1|WP_074025361.1|377664_378630_-|LysR-family-transcriptional-regulator
MFNISLRQLEYLVTVAETGTINAAADICMVSPVAVGHALGELDRALGTPLTNRVRAKGVSLTPAGETVAEQARKILQDVAQLPLLIDAQSTTIGRTVRIGAFASLSASTIPPLITHFRKSHPETEIHFIEGDYDVLTAALSAGEIDMFLAQRNQLRPGVQALPIRRLKPYILMSTDHLLAAETDISFHQLHNEDFIRLGLSPARQHMTAILEEHGLKDRIRWTSDSIETVKELVGSGLGISLLYSYNQHFHTISGKKLSSVPIRDIGRENFTVVCIPDNIDPSPATLAVVDFFRSEAEQILPVGGLIHEQVSDHNVIRLAP
>NZ_CP015622.1|WP_066564015.1|378739_379783_+|MBL-fold-metallo-hydrolase
MSWRKIMEKPYVITLGTAGGPRVWTPEDGAEPRCGIATAIVVGDRWYLVDCGQGVYRQIWKAGLDLKKLAGIFITHLHSDHVVDLTNVLVLAFPEFAKLGIQVPIYGPGDRGFLPPVNKQATGPVNPVYPDNPTPGTVDFVDLALRAHATDINDRVMDSLRPSPLDIWRPKDIALPSEIGFHPNDNPYPEMAPFVIHEDDSVKVTATLVIHPPIAPAFAFRFDTEAGSVTISGDTRFSENLRTLSENTDLLLHEAIDFEWVHRFNDEHTETGRAVIEHHQKSHSSPEDAAIIAEESGAKQLALHHLVPGTAPASVWHAASNTFGGKLHIPVDNQRISLSEKIGDEHA
>NZ_CP015622.1|WP_157776001.1|379775_380729_+|hypothetical-protein
MRKTLIAMISLMGVFLAGCSTGDFEYPSKKMELIVGYGAGSANDTIARSYASALEEVSGATVLVVNRPGAGGIISATEAMLAPADGYSLLLAPISAFTTAPLMQEVYYSPEDFRTVSALAEQPFAITVAADSPYDSLEDLGKVDSLTSAILGEGHASQVVIGTIMQQLGSQIRSVPFDGSGAVLQSVISGETDVAITDANTAYQRVRSGELKALAVTGSQPMEVFPGVPTVSEAGFPEADYMVTQALAVPVGTPDEIVKKLEELSDRAVGTATYQDFLAATNTFVPEMEGSEWMENYAPSEMERLKKAYTELGIGPK
>NZ_CP015622.1|WP_066564021.1|380725_381292_+|tripartite-tricarboxylate-transporter-TctB-family-protein
MSNISQPDRITDEQVQLSATKVDTVDKESEILDSPHEPLHLESGSPILYRIVIGVLTIVALFLAVYSWNLGIGSFRKPAPGLWIFVVSLMILVSIPGAILVKEKFEVFNIADVSRSVIMAAGLGAFVLLYPWFGFLIAGAVSLVIITRYSALETWRNTWIIALGTPAVLYVLFGVLFQVSFVPLPTFF
>NZ_CP015622.1|WP_066564024.1|381320_382853_+|tripartite-tricarboxylate-transporter-permease
MDTLSGLMSGFEVAFSPYNLLFVGLGVLIGTVIGLIPGLGPVTAIALLLPLTYELEATTSIMMLAGIYYGSMYGGRIPAILLRLPGDASAVITTFDGYPLAKQGKASEALSLTAIGSFIGGTIAIVGLTFLSPWLATLATNINSADMFALAFVGLLMIVLMGSGSKWKALIIGCLGILIATIGIDPVSGTSRLTFGNLELLMGIDIVAVAVGLFGIGELIYNAEHGFHKGMKDMNVKPKMPSRADWVLSRFAILRASIIGFFIGIIPGGGGPVSSVVAYGAEKRISKRPEKFGKGAIEGLAATETADNASSNSAFIPLLTLGVPPNPVLALIFGALMLQNITPGPNLINEHPEVFWGVIASMYIGNVLLLALNLPLVGVFVQMLRIRGSLMAPVILLVALCGVFSVRNSLFDVATSIVFGFVGYALRKANFEMGPFILGFILGPILEVQFRRTMLVSDGDFGIFLERPLVLAIGLVILAIVAASVVDLFRKRQKKLRQLADDPDHTMYIG
>NZ_CP015622.1|WP_066564027.1|382869_383256_+|DUF202-domain-containing-protein
MTETLKSDGRGWFSRFVFPDGEEPDPRFTLANERTFLAWTRTSLAFLAGGIAFEAFPIDSIDPTLRTGVAVFIIAVGMLIAAGAAGRWVNVERAMRHKKPLPVPAIVPLLSLSALVAASTVLVLFVIK
>NZ_CP015622.1|WP_066564029.1|383262_383595_+|DUF202-domain-containing-protein
MSSYLAPLHSDPGLQPERTILAWNRTTVSMAVCTAVILRWTNFYGAAILIPVAFLVGLAMFILVTQKFRYHRQSLGLANETISPNLIGVTTMTLTLLLFGGAGVFFVVVN
>NZ_CP015622.1|WP_066564031.1|383774_384296_-|excalibur-calcium-binding-domain-containing-protein
MRKTIVTLLATTAIAFSAISPVQAETVESDVNASQSSELSSGSSEHSDSEIIFGIAAIAAVGGLIAGGVHWAVQQRMIPNPLPGIIPNPPALAPAPAPAPQPVAPAPATAPAPVQRVAPAPAPAPAPVQTNRSYKNCTEVWRVLGRSIRQGEPGYGTHLDRDRDGVGCESRPR
>NZ_CP015622.1|WP_066564033.1|384659_385148_-|CAP-domain-containing-protein
MWKITRKIAAITLPFALALSVIPNANAFSALSSNFTNSSPATNTNPTNNNASSVELEVLDLINKHRAAHGVAPAQIRTDLMENSKRWSQTMSREDNFRHSGQNVAENIFWASNSVGAEKTFTSWKNSPGHNRNMLNGNYSVMGIGIVYGANGSTWATLQLLP
>NZ_CP015622.1|WP_066564036.1|387182_388277_-|FUSC-family-protein
MSEVAARLKQKISSPAFQSDVLQVFKAALAATVTWWISVNLLHSQLPFLAPWVALMTMQFTFYHTVISGIQTAIASVIGVGLSFVIGTYLDVNVWTFGLAMVIGLIGARIPKLRAEGIGIATTSIFLLAAGFDDQQPLLLDRVLEIFLGVAIAIGINLIIFPPLRDREANMVVDGLDQRMGEILQKIADDLSEKWNIDNADEWLREINSINNELEKAWNSVRFARESRRVNPRKIRIQRGRPQPTEINYEANLTRIDEGIAHLRHLARTLRDTPNIDSDWDPIFQQQWVALVHDAGSLLSDPKQQIDPIRERLAKLSSEMSEDQKLSSKAWPIYGSLLTSLFHLSALVDDTVATRKMEETEQDD

Crispr_ID: NZ_CP015622_3

• CRISPR_ID: NZ_CP015622_3
• CRISPR_location: 493595-493690
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers
• Cas_protein_info: csa3

Consensus repeat of NZ_CP015622_3

Consensus_repeat	Method
CCGTGGGCACTGTCGTTTGGTTTT	CRISPRCasFinder

spacers of NZ_CP015622_3

>3.1|493619|48|NZ_CP015622|CRISPRCasFinder
CCGTGCTTGAAACCGGTCACATATGCCCACGAAGCTTGTTTTGAGGGC

CRISPR arrays and Neighbor proteins around NZ_CP015622_3

CRISPR arrays

The CRISPR arrays of NZ_CP015622_3

>merge|NZ_CP015622|3|493595-493690|CRISPRCasFinder
CCGTGGGCACTGTCGTTTGGTTTTCCGTGCTTGAAACCGGTCACATATGCCCACGAAGCTTGTTTTGAGGGCCCGTGGGCACTGTCGTTTGGTTTT

>NZ_CP015622|3|3|493595-493690|CRISPRCasFinder
CCGTGGGCACTGTCGTTTGGTTTT	CCGTGCTTGAAACCGGTCACATATGCCCACGAAGCTTGTTTTGAGGGC
CCGTGGGCACTGTCGTTTGGTTTT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015622.1|WP_082868777.1|499923_500259_+|DUF4229-domain-containing-protein	unknown	unknown	gnl|CDD|379415
NZ_CP015622.1|WP_066564315.1|499529_499829_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015622.1|WP_066569416.1|492292_493291_+|c-type-cytochrome-biogenesis-protein-CcsB	unknown	unknown	gnl|CDD|274447
NZ_CP015622.1|WP_066564281.1|481813_484453_+|HAD-IC-family-P-type-ATPase	unknown	unknown	gnl|CDD|225127
NZ_CP015622.1|WP_074025382.1|487180_488485_+|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl|CDD|234607
NZ_CP015622.1|WP_066564313.1|499090_499456_-|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl|CDD|238042
NZ_CP015622.1|WP_066564307.1|495865_496645_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224041
NZ_CP015622.1|WP_066564300.1|490569_492201_+|cytochrome-c-biogenesis-protein	unknown	unknown	gnl|CDD|224252
NZ_CP015622.1|WP_066564319.1|500334_500829_-|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl|CDD|379275
NZ_CP015622.1|WP_066564309.1|496677_498324_+|M24-family-metallopeptidase	unknown	unknown	gnl|CDD|238514
NZ_CP015622.1|WP_066564296.1|489096_489720_+|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl|CDD|239264
NZ_CP015622.1|WP_066564290.1|485714_487073_+|protoporphyrinogen-oxidase	unknown	unknown	gnl|CDD|237009
NZ_CP015622.1|WP_066564311.1|498340_498799_+|RidA-family-protein	unknown	unknown	gnl|CDD|100006
NZ_CP015622.1|WP_066564287.1|484623_485700_+|uroporphyrinogen-decarboxylase	unknown	unknown	gnl|CDD|234644
NZ_CP015622.1|WP_066564306.1|494820_495858_+|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|378117
NZ_CP015622.1|WP_066564323.1|501034_501931_-|1,4-dihydroxy-2-naphthoate-polyprenyltransferase	unknown	unknown	gnl|CDD|235695
NZ_CP015622.1|WP_066564297.1|489720_490527_+|cytochrome-c-biogenesis-protein-CcdA	unknown	unknown	gnl|CDD|223856
NZ_CP015622.1|WP_066564273.1|481191_481704_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP015622.1|WP_099092684.1|494008_494788_+|ABC-transporter-permease	unknown	unknown	gnl|CDD|223673
NZ_CP015622.1|WP_066564294.1|488481_489090_+|histidine-phosphatase-family-protein	unknown	unknown	gnl|CDD|366010

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP015622.1|WP_066564313.1|499090_499456_-|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	4.3e-13	44.4	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP015622.1|WP_082868777.1|499923_500259_+|DUF4229-domain-containing-protein	gnl|CDD|379415	pfam14012, DUF4229, Protein of unknown function (DUF4229). This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 95 and 122 amino acids in length.	1.15322e-20
NZ_CP015622.1|WP_066564323.1|501034_501931_-|1,4-dihydroxy-2-naphthoate-polyprenyltransferase	gnl|CDD|235695	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated.	3.71916e-121
NZ_CP015622.1|WP_066569416.1|492292_493291_+|c-type-cytochrome-biogenesis-protein-CcsB	gnl|CDD|274447	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction. [Energy metabolism, Electron transport, Protein fate, Protein modification and repair].	6.55798e-89
NZ_CP015622.1|WP_066564281.1|481813_484453_+|HAD-IC-family-P-type-ATPase	gnl|CDD|225127	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism].	4.0245e-162
NZ_CP015622.1|WP_074025382.1|487180_488485_+|glutamate-1-semialdehyde-2,1-aminomutase	gnl|CDD|234607	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase.	0
NZ_CP015622.1|WP_066564313.1|499090_499456_-|winged-helix-turn-helix-transcriptional-regulator	gnl|CDD|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	2.2203e-16
NZ_CP015622.1|WP_066564307.1|495865_496645_+|ABC-transporter-ATP-binding-protein	gnl|CDD|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.13201e-111
NZ_CP015622.1|WP_066564300.1|490569_492201_+|cytochrome-c-biogenesis-protein	gnl|CDD|224252	COG1333, ResB, ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP015622.1|WP_066564319.1|500334_500829_-|nuclear-transport-factor-2-family-protein	gnl|CDD|379275	pfam13577, SnoaL_4, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	4.72849e-15
NZ_CP015622.1|WP_066564309.1|496677_498324_+|M24-family-metallopeptidase	gnl|CDD|238514	cd01066, APP_MetAP, A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.	6.18908e-12
NZ_CP015622.1|WP_066564296.1|489096_489720_+|TlpA-family-protein-disulfide-reductase	gnl|CDD|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.24404e-28
NZ_CP015622.1|WP_066564290.1|485714_487073_+|protoporphyrinogen-oxidase	gnl|CDD|237009	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed.	1.66669e-174
NZ_CP015622.1|WP_066564311.1|498340_498799_+|RidA-family-protein	gnl|CDD|100006	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	1.29005e-58
NZ_CP015622.1|WP_066564287.1|484623_485700_+|uroporphyrinogen-decarboxylase	gnl|CDD|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	0
NZ_CP015622.1|WP_066564306.1|494820_495858_+|ABC-transporter-substrate-binding-protein	gnl|CDD|378117	pfam09084, NMT1, NMT1/THI5 like. This family contains the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine. They are regulated by thiamine. The protein adopts a fold related to the periplasmic binding protein (PBP) family. Both pyridoxal-5'-phosphate (PLP) and an iron atom are bound to the protein suggesting numerous residues of the active site necessary for HMP-P biosynthesis. The yeast protein is a dimer and, although exceptionally using PLP as a substrate, has notable similarities with enzymes dependent on this molecule as a cofactor.	7.7021e-35
NZ_CP015622.1|WP_066564297.1|489720_490527_+|cytochrome-c-biogenesis-protein-CcdA	gnl|CDD|223856	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones].	1.83007e-38
NZ_CP015622.1|WP_099092684.1|494008_494788_+|ABC-transporter-permease	gnl|CDD|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	6.92097e-60
NZ_CP015622.1|WP_066564294.1|488481_489090_+|histidine-phosphatase-family-protein	gnl|CDD|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	1.54396e-39

Protein sequences

>NZ_CP015622.1|WP_066569416.1|492292_493291_+|c-type-cytochrome-biogenesis-protein-CcsB
MPVNQTYAQFSDTAFVSAYIIYVLALILSLVYYVKQQGIIDARREHARVNELVGAGGSTELPSDFADGVLPDDTLIQRESSARKLANMTQSLMWLGVTVHLVSVVMRALSASRFPFGNLYEYILMVSLFAIIGAVLILQRPQFRVIWPWILTPMLALLFYGGTELYSDSAPVVPALQSFWFPIHVSSVSIGASIGMVSGIASLLYLLRMWHPKGKEKGFFGAVAKPLPSGKTLDNLAYKTAIWTVPLFGLGIILGAIWAEAAWGRFWGWDPKETVSFITWVLYAGYLHARATAGWRNTNAAWINILALITMIFNLFFINMVVSGLHSYAGLN
>NZ_CP015622.1|WP_066564300.1|490569_492201_+|cytochrome-c-biogenesis-protein
MLKTVKLYAKKAWHWLTSMRTALALLFLLAIAAIPGALLPQRSLNESNVIEYIENNGKLAEFYDKIQLFDVFSSTWFTAIYMLLLISLVGCILPRTLEHYKAMRAPVVRAPRNLARLSHNGEGIVEKREEEVEKDVRKLLKGWKITEYSAKEDRAGVRSFSAEKGYIREFFNLVFHLGIVGMIVTAGLGRLFYYEGHVIVVTDGEQNEQNSVFCNTATANYDSFRAGANFDGTGLTTFCFEAHDFSADYLPNGQAEMFRSNISYAMGEDIQNDPETWEDYELRVNHPLRIEGDRVYLQGHGFAPTFTVNWPNGESRTQTVQWRPDDPTFFLSSGVVRFDPPAGMYPDLFERRQNQLAIQGLFAPTAQWEGENGELLTSAYPAMRDPAVAIDIYRGDNGLDTGIGQSLFSLDSSLMHSGVLQKIERVNLEIGDTVTLDDGTTVTFDGASEFANYQISRDPTQNWVLVTTVISLVSLVGSLMIRRRRIWVRLYPQDDGTTRIETGGLARTDRAGWGGEYEKFHRQLLGLKEEDEDEEYFDDDDRD
>NZ_CP015622.1|WP_066564297.1|489720_490527_+|cytochrome-c-biogenesis-protein-CcdA
MSEFVVAQSIGQQFADVAASGPLFLGILAAALAGLVSFASPCVVPLVPGYISYLAGVVGGEVEYSQQGAKVKTKRFAVGAAALMFILGFTVVFVLATVSVFGAISLLTLNADTLMRVGGVVTILMGIVFMGFIPGLQRDTRMAPKRWTTWLGAPLLGGIFALGWTPCLGPTLAAIISISAGTEGMTAARGVILIIGYCLGLGLPFLLIALGSSKALTGADWLRKHSRKLQIIGGVLLILVGVALLSGSWAIFINWVRQWTVEYGATLL
>NZ_CP015622.1|WP_066564296.1|489096_489720_+|TlpA-family-protein-disulfide-reductase
MRLTKLAATIGCVTLSGFALVACGSDSTAGTDAVAVGGTFQFHSPDGKMEIFYDEADRQQLPNIGGDSLMNEGTEIQLSDFENQVVVLNAWGQWCAPCRSESDDLQVIHEELQAAGNGETPGGTVLGVNVRDYSREIAQDFVTDNGLDYPSIYDPPFMTAAQLGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDILDVALPLVDEA
>NZ_CP015622.1|WP_066564294.1|488481_489090_+|histidine-phosphatase-family-protein
MTQTIVHLVRHGEVHNPEKILYGRIPGYQLSSRGRSQAARTAASFEGHDVTYIAASPLQRVQETSEPFLKVTGLELITDEDLLEAGNRFEGLRTKGLRSQLWNPVRWPLMYNPTLPSWGEHYTDILERVMAAVERARVAAEGHEAILVTHQLPIVCVQRHARGQSLSHNPALRQCDLASVTSLVFQDDQIVGVHYNEPAQEI
>NZ_CP015622.1|WP_074025382.1|487180_488485_+|glutamate-1-semialdehyde-2,1-aminomutase
MTSSNTARSAEWFEKAQKLTPGGVNSPVRAFGSVGGQARFIEKAHGSTLIDVDGNEYVDLVCSWGPMLMGHAHPAVVEAVQKAVVDGLSFGAPTIGEVELAQDIIKRTSVEEVRLVNSGTEATMSAVRLARGYTQRSKILKFEGCYHGHVDALLASAGSGVATFALPDSPGITGAQTSDTIVVPYNDIEAVRNAFAQYPGQIACIIAEAAGGNMGTVAPLNNFNDKLLAIAHADGALLILDEVMTGFRTSYRGWFGVDKVTADLVTFGKVVSGGLPAAAFGGKAEIMNMLAPQGPVYQAGTLSGNPVAVAAGRASLKLADESLYDTINANADRLHALISEALSHEGVAHHIQRASNMLSIRFAEGEGHNFSDMKAADTFRFAPFFHALLDNGIYAPPSVFETWFVSSALTDDDFSKIEQALKPAARAAAEAKAS
>NZ_CP015622.1|WP_066564290.1|485714_487073_+|protoporphyrinogen-oxidase
MRFAIIGAGLAGLTAAYEIHKADPTAHIDVLEAGERIGGKLFTVPFASGPTDIGAEAFLAARFDAVDFFTELGLADSLVSPSTEAKSQYFAGGQLHAFPAGGVMGIPAAAPDAPEFPADAPFEWIPGQDISVGALVRRQYGDQIVDTVVSSLLGGVYSSTADDLGLRASVPALAAALDQLAEAGESVTLSAAVKAVEAQRAATKSSSETRPVFQTFKGGYAELYEALAEQCGADIHLDSFVSAITKSGEGFAIKGGGEGIYDKVILAVPAPTAAVLLRDLTPDAAPHLRAIKLASSAVVGMRFDSAEGLPDNSGVLVAVNEPGITAKAFTFSSKKWPHLASRGGALVRASFGRLGDEASSRMDEDLLVDAALDDLLTITGFDGRAAGLGEIFVQRWFGGLPVYGVDHIATVAAARAEIARVPGVEAIGAWAGGVGVPAVIADAQAAVHRLLG
>NZ_CP015622.1|WP_066564287.1|484623_485700_+|uroporphyrinogen-decarboxylase
MTTFNIPAARRTLVDAPILDAANGKTPTRTPVWFMRQAGRSLPEYKKVREGISMLDSCFMPELLAEITLQPVRRHDVDAAILFSDIVVPLRAAGVGVEIVPGRGPVLDSPVRSRQDVDNLPILEGNVPEIEEGIRIILDELSDSQTLIGFAGAPFTLASYLVEGGPSKNHEKTKAMMHGEPQTWHALMERLVPTIVNSLKSQINAGIDAMQLFDSWAGFLTERDYTEFVLPYSTQILDEIEQYQLPRIHFGVGTGEILGAMSKAGSEIMGVDWRVPLDKAAERIAAVSGPKVLQGNLDPALLFAGRAPLTKEIERIKAEAQTAIDAGHATGHIFNLGHGVLPNTVAEDITEAVSIIHS
>NZ_CP015622.1|WP_066564281.1|481813_484453_+|HAD-IC-family-P-type-ATPase
MSASSESSSVDKAVDTAITDAKTAALQAGIGLTRLIESDEEEDVSSDIKVSLAFELEGLDSAPSLIALEKALEEIPGVSADLIYPSQTAWITATDRVHPDTLIETFAEFGIRAQLSNSSLLRRHQQISAEVSREARIDRYRSRMSAKRISPRVRRHNREEMIHAVRARESGWIKRKHHSSAQQEDPMSGDVLFTARALITPMRLWVSLPFALIVLGLSLYPAVQFDYWQWLSAALSIPVVVWGAWPFHRAAAGGIRRGISALDATSSIAIAAAYLWSIAMLLFESPGNKSWRSYPSWFAFDHGTLTQNEIYFDVACGITVLLLAGRLLTRRRSQSSLLAELARLQINPLRTVTVVRKHRMTRVVEELNIPVQEVRVNDDVKVPPNTMIPVDGTVIGGGSKIAASIIMGQDPRVVKVNDRVFAGSVNIDAELKVRVVRTGHRTRIAAVHRWVKEATFRENRHNRAAIRSAGNLVPITFSLAVVDFCLWALISGNINAAFTTALAVLACVAPVALALSAPLATRNSIEAAARHGVLVRSGEIFRMLDDVDTTVFNRGGTLTDGEMTVETVTADKGEDPELVLRVAGALAMESQHAISKALVKASREARDSGAGGDDVPHWIEVGNVEITEEGSFLATVELPIIKPTGEKVMRSVEATLWRPRSMTEVREHLSPRLVAAATSGGAPLIVRWKGKDRGVITLNDHVRTDASDAILAIEEQGIETMMLSRDTYPVARRYADSLGITHVLAGIAPGKKSQVVRAVHTRGSTVAMIGDGSVLDCLKVADVGILMGVDRPSELRDDADDPAADVVVLREAVMSVPVLFRLARRYARLVNGNIALAWIYNGVAMVFAISGLLHPMAATVAMLASSLLIEWRSGRARRF
>NZ_CP015622.1|WP_066564273.1|481191_481704_+|hypothetical-protein
MPSMFPSPATGGDDINRRPLNEGETDGTSIPTILKVVFWMLFATAAFMIFAGLVMYTAGYTGPADVEESYKDVVVNNQKFIGAINGFAGIVIVALTSQLPKSGKNPRRILLAIILLVVLTDLLSFATRAGGFALALIAVLLALEALLLFRPAINDHIERNHMAHVMESKK
>NZ_CP015622.1|WP_099092684.1|494008_494788_+|ABC-transporter-permease
MPKKPLIPRNTLVTAIKAVIGIAGLFVIWELIVLITNPPRFLLVGPSAAFAELFNRPGYFASNAWVTLQEALAGFVLGTALGVLCGAALHYFPAVRTFLYPALVAIDTIPKVALAPLFIVWFGFGFESKVFVAMAIAFFPLVINTFDGLSSVPHELKELARINRANTWQRLTKIEFIYAVPSIFSGMKISISLAVGGAVVGEFISGSKGLGYVILLANSQVDLASMFAAFIVLASISLTLFYAVDLAAKRLVPWKTYAK
>NZ_CP015622.1|WP_066564306.1|494820_495858_+|ABC-transporter-substrate-binding-protein
MNKKKIAAMTAALAIAIPLVSSCSSASNGDSVDIMMDVGYLPKHAPFFAAVAEGFFEEEGLDVSLMPGSGSNNTVTSVETGRVFAGFADFGVTVMNQGRGAQVRQVNLLQARSSYAAVADKESGIESWDDLKGKTVATEGAGAMVSMWPYALNQLGYAEGDINVVHASSESKIPGLLAHQWDANLALAVSDAPALAALGIEPVVLNWADIGISLYGNGMVVSNETIEKEPEKLEKFNRALQKGFLWACENPEKTYKDFNAEVQGYEESTILLALEEQCALNWQSDTTTDPFGTMSDEGVQEMIDVAQEYLGMDPSVSITPDQVYTNEFITPINKGTVIAAPSQKK
>NZ_CP015622.1|WP_066564307.1|495865_496645_+|ABC-transporter-ATP-binding-protein
MSNTSAISVKNVGVTFHSRDGAENKVLEGVDFDVQPGEFVSIVGQSGSGKTTLLKTISGLQQATHGEVLVNGKPIAEQVEDIAMVFQAPVLLPWRNNLNNVLLPLEFRGTRSKESLDRAYQLLEMAGLKGKETRYSYELSGGMQQRVAICRALVSNPQLLLMDEPFGALDAMTRDSMNFEIQKIWMREKCSVLFVTHSISEAVWLGDRVIIVGDRPGHIVADIKIDIPRPRAKEHRFSEVFSDYVAEIESFIGVTAGIS
>NZ_CP015622.1|WP_066564309.1|496677_498324_+|M24-family-metallopeptidase
MHLTSSPARLQELFNLDAQKSLLFSAIRLDSHPLVAPIIATVKDQDPILLVRQQEQGNIFSSGVPRNKIRFYAPWVTIDDAPLEGVEAASSVQELIKELADENPVCFAPDIAYAHYLAAQDQVQVSVESAAPHAIDVVKLDQGIVEKRFSDWRRAGVEEAKKLIRGIAHLEGLEKELDQVGNDSRFELLQDIASRHALSAIYVASPPNFSEITGIAATEGASVLWDAATQTAFLFLPQGTPAPEGTEAVDSFASISEAVRELIGEDKTVGVEEEYLGTAVALSLTEGEIVPLQTELSNWRDVRDSEDLPFQIIASRTSVTIMENTLEWTNNRLERGEEFTELDIYARYLEELEDYALQFTFDVEPYFTNLHSSNRMLFPGPPVDFPINSETRCIQLDAGVAVKKNGVVLGTSDMARSLPRTAAGREAYEYFFQVVREGIISQLRPGTICADVHEATLDYLAPQLPRMIDIGMLNADVDFNTIYRKRNVGHLMGKQESFANELRPGYDHVLRHGSYGAAEIPWRYNGVAIGTEDLWYIGEDKTYILSQR
>NZ_CP015622.1|WP_066564311.1|498340_498799_+|RidA-family-protein
MTDISANLKSLGIELPDLPAPQYSYVPFHRQGNTLYVSGQISRTAAGDIVTGRVGADASVEEGIHAAEVATINLLARIEQAIGLENVASILKLNVWVNSAADFVEQPRVADGASRLLEKVLGEAGKHARTALPTHTLPQGALVELDAVVAIS
>NZ_CP015622.1|WP_066564313.1|499090_499456_-|winged-helix-turn-helix-transcriptional-regulator
MTFALTPSADQRFAPLKSVPSTITDTAKEASGFYKALGDATRLEILYLVFTTKTSRVSANALAHALDISAPTVTHHMKKLIAAKLITREQCGKWAYFSIHPVHADTVAAIFTQSDSHKKSI
>NZ_CP015622.1|WP_066564315.1|499529_499829_-|hypothetical-protein
MGRLLLIILVIVAIVLLWKAFKPSTWKSNAGLNKGQARRAVKGPDDDEEFLWNIEKNRFKRRRAEEAAQLEEEERLKRARERYAKPQEPEEGTEEATEA
>NZ_CP015622.1|WP_082868777.1|499923_500259_+|DUF4229-domain-containing-protein
MSESNTPNAQHPQAPELNLELQKAARKNVLIYGLARLALFVVLTLVIHGLAQLINAPVPVVMSAMLALIVAFPLSMLVFNKQRVNATWAVAQWDAQRKAHKEWVRSELADR
>NZ_CP015622.1|WP_066564319.1|500334_500829_-|nuclear-transport-factor-2-family-protein
MYQRFTPEEVADRLEIYDLFARYIHAADSHDIDAMDEVFLEDTVFDWTDSGGDRDLWKDAKQGDFITGKTFEFIFHMCGNLKIVFGPDGNTAVVDSKTIHPTGLRGRDGEPRLSQVHGGYTDQLRRTDHGWRIVERRWNDAWVVGGLHEVNGIPAMLQEAGVLD
>NZ_CP015622.1|WP_066564323.1|501034_501931_-|1,4-dihydroxy-2-naphthoate-polyprenyltransferase
MSHTEPHPASATLSDWFQGARPHTWANAFAPVIAGSGVAAFHDGFIWWKALLALVVAWALIIGVNFANDYSDGIRGTDEDRTGPLRLTGSGLVAPKKVKAAAFIAFGVAGIAGTALSVLSAWWLILIGIICVLGAWFYTGGKNPYGYRGLGEIAVFIFFGLVAVMGTQFTQTGFISWVGLAAAVGVGSMSAGVNLANNIRDIPTDREAGKITLAVRLGDNGARTLFLALVSTPFIMSIVLAFAAWPVLVALIVLPLALMAAKPIRNKATGKDLIPVIGATGRAMALWAVLTGLALAFS

Crispr_ID: NZ_CP015622_4

• CRISPR_ID: NZ_CP015622_4
• CRISPR_location: 2572341-2572436
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP015622_4

Consensus_repeat	Method
CCGTGGGCACTGTGGTTTGGTCTC	CRISPRCasFinder

spacers of NZ_CP015622_4

>4.1|2572365|48|NZ_CP015622|CRISPRCasFinder
CAAGCCTTCAAACCAGACAGACAGACCCACAGCCAAGATTTTTAGCTT

CRISPR arrays and Neighbor proteins around NZ_CP015622_4

CRISPR arrays

The CRISPR arrays of NZ_CP015622_4

>merge|NZ_CP015622|4|2572341-2572436|CRISPRCasFinder
CCGTGGGCACTGTGGTTTGGTCTCCAAGCCTTCAAACCAGACAGACAGACCCACAGCCAAGATTTTTAGCTTCCGTGGGCACTCTGGTTTGGTCTC

>NZ_CP015622|4|4|2572341-2572436|CRISPRCasFinder
CCGTGGGCACTGTGGTTTGGTCTC	CAAGCCTTCAAACCAGACAGACAGACCCACAGCCAAGATTTTTAGCTT
CCGTGGGCACTCTGGTTTGGTCTC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015622.1|WP_066567994.1|2566107_2567400_-|glycoside-hydrolase-family-32-protein	unknown	unknown	gnl|CDD|224536
NZ_CP015622.1|WP_066568018.1|2575272_2576238_+|ABC-transporter-permease	unknown	unknown	gnl|CDD|223674
NZ_CP015622.1|WP_066568021.1|2576238_2578242_+|dipeptide/oligopeptide/nickel-ABC-transporter-permease/ATP-binding-protein	unknown	unknown	gnl|CDD|223521
NZ_CP015622.1|WP_066567984.1|2560734_2561463_-|IclR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224332
NZ_CP015622.1|WP_066567997.1|2567430_2568192_-|glucosamine-6-phosphate-deaminase	unknown	unknown	gnl|CDD|238693
NZ_CP015622.1|WP_066568001.1|2569575_2570514_+|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl|CDD|223406
NZ_CP015622.1|WP_066568038.1|2581706_2582426_+|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|223816
NZ_CP015622.1|WP_066567987.1|2561563_2562505_-|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl|CDD|223640
NZ_CP015622.1|WP_066567991.1|2563974_2565957_-|PTS-beta-glucoside-transporter-subunit-IIBCA	unknown	unknown	gnl|CDD|131051
NZ_CP015622.1|WP_066568009.1|2573528_2575145_+|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl|CDD|173853
NZ_CP015622.1|WP_066568003.1|2570529_2571441_+|ROK-family-protein	unknown	unknown	gnl|CDD|224851
NZ_CP015622.1|WP_066567999.1|2568235_2569402_-|N-acetylglucosamine-6-phosphate-deacetylase	unknown	unknown	gnl|CDD|238434
NZ_CP015622.1|WP_066568005.1|2571475_2572174_+|putative-N-acetylmannosamine-6-phosphate-2-epimerase	unknown	unknown	gnl|CDD|225555
NZ_CP015622.1|WP_066568044.1|2582422_2583550_+|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl|CDD|223715
NZ_CP015622.1|WP_066568025.1|2578238_2579057_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224048
NZ_CP015622.1|WP_066568031.1|2579524_2580007_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl|CDD|178851
NZ_CP015622.1|WP_066568034.1|2579999_2580764_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl|CDD|234670
NZ_CP015622.1|WP_066568008.1|2572492_2573212_-|FadR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|225097
NZ_CP015622.1|WP_066568036.1|2580774_2581371_-|CarD-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224248
NZ_CP015622.1|WP_066567989.1|2562549_2563932_-|cysteine--tRNA-ligase	unknown	unknown	gnl|CDD|234705

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP015622.1|WP_066567994.1|2566107_2567400_-|glycoside-hydrolase-family-32-protein	gnl|CDD|224536	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism].	2.32586e-130
NZ_CP015622.1|WP_066568018.1|2575272_2576238_+|ABC-transporter-permease	gnl|CDD|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	6.30864e-96
NZ_CP015622.1|WP_066568021.1|2576238_2578242_+|dipeptide/oligopeptide/nickel-ABC-transporter-permease/ATP-binding-protein	gnl|CDD|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.10175e-137
NZ_CP015622.1|WP_066567984.1|2560734_2561463_-|IclR-family-transcriptional-regulator	gnl|CDD|224332	COG1414, IclR, Transcriptional regulator [Transcription].	4.49363e-41
NZ_CP015622.1|WP_066567997.1|2567430_2568192_-|glucosamine-6-phosphate-deaminase	gnl|CDD|238693	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.	8.02253e-110
NZ_CP015622.1|WP_066568001.1|2569575_2570514_+|dihydrodipicolinate-synthase-family-protein	gnl|CDD|223406	COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane].	1.19042e-86
NZ_CP015622.1|WP_066568038.1|2581706_2582426_+|response-regulator-transcription-factor	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	5.94288e-86
NZ_CP015622.1|WP_066567987.1|2561563_2562505_-|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl|CDD|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	1.8848e-83
NZ_CP015622.1|WP_066567991.1|2563974_2565957_-|PTS-beta-glucoside-transporter-subunit-IIBCA	gnl|CDD|131051	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component. This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).	0
NZ_CP015622.1|WP_066568009.1|2573528_2575145_+|twin-arginine-translocation-signal-domain-containing-protein	gnl|CDD|173853	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel/dipeptide/oligopeptide transport systems, which function in the import of nickel and peptides, and other closely related proteins. The oligopeptide-binding protein OppA is a periplasmic component of an ATP-binding cassette (ABC) transport system OppABCDEF consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Similar to the ABC-type dipeptide and oligopeptide import systems, nickel transporter is comprised of five subunits NikABCDE: the two pore-forming integral inner membrane proteins NikB and NikC; the two inner membrane-associated proteins with ATPase activity NikD and NikE; and the periplasmic nickel binding NikA, which is the initial nickel receptor that controls the chemotactic response away from nickel. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand binding domains of ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	6.66726e-106
NZ_CP015622.1|WP_066568003.1|2570529_2571441_+|ROK-family-protein	gnl|CDD|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	6.26125e-44
NZ_CP015622.1|WP_066567999.1|2568235_2569402_-|N-acetylglucosamine-6-phosphate-deacetylase	gnl|CDD|238434	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.	8.90381e-130
NZ_CP015622.1|WP_066568005.1|2571475_2572174_+|putative-N-acetylmannosamine-6-phosphate-2-epimerase	gnl|CDD|225555	COG3010, NanE, Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism].	5.33181e-102
NZ_CP015622.1|WP_066568044.1|2582422_2583550_+|HAMP-domain-containing-histidine-kinase	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	5.25129e-55
NZ_CP015622.1|WP_066568025.1|2578238_2579057_+|ABC-transporter-ATP-binding-protein	gnl|CDD|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	3.39015e-107
NZ_CP015622.1|WP_066568031.1|2579524_2580007_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl|CDD|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	6.40783e-77
NZ_CP015622.1|WP_066568034.1|2579999_2580764_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl|CDD|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.44987e-85
NZ_CP015622.1|WP_066568008.1|2572492_2573212_-|FadR-family-transcriptional-regulator	gnl|CDD|225097	COG2186, FadR, Transcriptional regulators [Transcription].	8.1801e-54
NZ_CP015622.1|WP_066568036.1|2580774_2581371_-|CarD-family-transcriptional-regulator	gnl|CDD|224248	COG1329, COG1329, Transcriptional regulators, similar to M. xanthus CarD [Transcription].	5.22135e-70
NZ_CP015622.1|WP_066567989.1|2562549_2563932_-|cysteine--tRNA-ligase	gnl|CDD|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0

Protein sequences

>NZ_CP015622.1|WP_066568005.1|2571475_2572174_+|putative-N-acetylmannosamine-6-phosphate-2-epimerase
MELNQQRTDLYERLQGQLIVSVQAPDGHAMRDTHTLTHVAAACVDGGAPAIRCGGYGGLEDIRSISNRVDVPVFGLTKEGTEGVYITPTRDSVRAVAESGAAVVCADATFRPRPDGSTFAELVKVAHDSGILIMADCATPEEVLSAHQAGADFVSTTLAGYTEHREKTVGPDFDCLREARALVPDAFLIGEGRFSNPSDVAHGRLIGANAVIVGTAITDPGFITGQFASLLS
>NZ_CP015622.1|WP_066568003.1|2570529_2571441_+|ROK-family-protein
MTAHTCTLALDIGGTKIAYALVPDDAPTTTAASGRLGTKDGHNPASQTRLAFQAGADAAKQHNMTIARIGVGAPGVIIAPEGKIVYNGETVREWAGTDLRAMAQEIIPVPFAAHNDVRVWAYGEHHMGAGESLTGRVLYVSLGTGIGGAIIDQGALLDSPSGTAGEFAEIVCADFSGRATRCEDVASGTGLTAYYNKATGENLKLPSIMQKYHEGDTLAQEIIEGNLHGFGRALGALVTLLDLDAVVVGGGVSAIGEPILHPLCKGIKETVLPPRASIQMLTTALGPEAAVLAAAQYARDMAF
>NZ_CP015622.1|WP_066568001.1|2569575_2570514_+|dihydrodipicolinate-synthase-family-protein
MASATFTGVIPPVMTPLHEDGSVDLNSLRRLVDHLIDGGVDGLFALGSSGETVFLTREQRKLALSTIIEHTAGRVPVTAGVIETTTARVLELVADALEVGAEGLVATAPFYTRTHDVEIEAHFRDIHAAAPELPLFAYNIPVSVHSNLNPAMLLRLAQDGILSGTKDSSGNDGAIRSLIEARDDAGLKDSFTILTGSETTVDFAYLAGADGVVPGLGNVNPAAYAALAALCKAGKWDEAAALQKQINHLFHIVFVGDSSRMSGSSAGLGGFKTALKHLNIIDSSLLAAPHQPLDDEEIARVNAIVDEFYYTA
>NZ_CP015622.1|WP_066567999.1|2568235_2569402_-|N-acetylglucosamine-6-phosphate-deacetylase
MARVAQFQEHAGQMDAILSGRIVMPQGVIDGTLTVENGVIAKIEGRKVAESSGFPGQGLTIVPGFIDLHNHGGHGGAFPTGTVEQARRAAQYHRSHGTTVMLASMVSAPVEALSAQVRNLQNLCEEGLIYGIHLEGPFINACRCGAQNPQFIYPGSPGDLAQVIEAGQGWIKSITLAPETENLADILDLCAAHNIIASFGHTDADFDTTMNAISLAREKAVTVTATHLFNAMPPLHHRAPGAVGALLAAARAGDAYVELIADGVHLSDGTVDAVRVENAFFITDAMEAAGMPDGHYILGVLDVTVAGGVARLSDGGTIAGGTSTLAQQFGHHVRRGMSLIDATLHTSTTASRVLGLENHAIAEKNAANFVVFDSNGHLQQVYLIDQVI
>NZ_CP015622.1|WP_066567997.1|2567430_2568192_-|glucosamine-6-phosphate-deaminase
MDIIIRKDAQEVGKAAAALVAPFANKGGTLGLATGSSPLSTYKELIRLYEAGEVSFKECQAFLLDEYVGLTRDDENSYFKTIRNEFTDHIDILDDQVFSPDGANPDPHAAAEEYEAMLAAQSVAVQILGIGGNGHIAFNEPTSSLSGLTKVQALHPKTVEDNARFFSSIEEVPTHALTQGLGTLSRAQNIVLVASGEGKAEAIRGTVEGPVSASCPGSILQMHNNVTIVIDEAAASKLENAEYYRLMEQLKLR
>NZ_CP015622.1|WP_066567994.1|2566107_2567400_-|glycoside-hydrolase-family-32-protein
MRTELSNLRPAYHVTPPQGRLNDPNGMYVDGDTLHVYYQHDPGFPFTPKRTGWGHVVTQLTGPNRVQWTHLPDALYPDASYDLGGCYSGGAVFTDGSLKLFYTGNLKIDGKRHVTQNLVDVEDPAGPLGGIHRRSPKNPLIDGPASGFTSHYRDPMISPDDDDGWKMVLGAQRENLTGATVLYRSVDLEEWEFSGEITFDLQSAQPGSAPDLIPSGYMWECPNLFQLRDEITGEDLDVLIFCPQGLNRIDQGVTHYASSDQCGYVVGKLEGTTFHVMRGFSELDFGHEFYAPQVAVASSDAWLIGWMGLPAQDDHPTVEQEGWVHCLTVPRKLRLRNHALYQELLLPEGAPSVTRSVLGSEPVRMDIRDNIVLEWDGARLSVDRDGDCRTVEVDPGELVIADDNTAIEITAGNGQVSFAFRTFKGDTIEV
>NZ_CP015622.1|WP_066567991.1|2563974_2565957_-|PTS-beta-glucoside-transporter-subunit-IIBCA
MDHKSLAQRILRSIGGEDNIVAAAHCATRLRLVLKDSKGVDRQSLDDDPDLKGTFETGGMFQIIVGPGDVDHVFKELDAATSKDIAVSTEQLKDVVVNNANWFSRAVKVLADIFVPLIPILVGGGLLMAINNVLVAQDLFGPQSLVETFPQISGVAEMINLMASAPFAFLPVLVGFTATKRFGGNEFLGAGIGMAMVFPSLVNGYDVAATMAAGEMPVWSLFGLDVAQAGYQGTVLPVLVVSWILATIEKFLHKRLKGTADFLITPVLTLLLTGFLTFIAIGPAMRWVGDLLAHGLQGLYEFGGPIGGLLFGLVYSPIVITGLHQSFPPIELELFNQGGSFIFATASMANIAQGAACLAVFFLAKSEKLKGLAGASGVSAVLGITEPAIFGVNLRLRWPFFIGIGTAAIGGALIALFDIKAVALGAAGFLGVVSIDAPDMVMFLVCAVVTFVIAFGAALAYGLYLVRRNGSIDPDATSAPIVASPAQTSEVLAEFGSDSAIVQSPLTGEVISLGSVSDAMFASGKLGAGVAVVPSTGELVSPVSGKVVVAFPSGHAFAVRTKTEDGSNVDILMHIGFDTVNLNGTHFRAHKKQGDEVQAGELLCEFDIDAIKAAGYEVTTPVVVSNSKKTGPVNTYGLGEIVSGAKLLNVANKATVAATS
>NZ_CP015622.1|WP_066567989.1|2562549_2563932_-|cysteine--tRNA-ligase
MTLRIFDTGTRTLREFQPVKPGHASVYLCGATPQALPHIGHVRSAVAFDILRRWLIAKGLDVAFVRNVTDIDDKILNKAAENGRPWWEWVSTYEREFTWTYNTLGVLPPSVEPRATGHVTQMVEYMQRLIDNGFAYAVDGSVYFDVASWSKAEGSDYGSLSGNRVEDMEQGETDNFGKRGSQDFALWKAAKPGEPSWPTPWGEGRPGWHLECSAMATYYLGEQFDIHCGGLDLQFPHHENEIAQAHAAGDKFANYWMHNHWVTMAGEKMSKSLGNVLSVPEMLKQVRPVELRYYLGSAHYRSVLEYSENALNEAAVGYRRIEAFLGRIGEVEVGEWTEAFEAAMDEDIAVPKALAEIHNAVREGNSALDKGDRQGAEKLAASVRAMTGVLGFDPIEWGTGADSDGKADNALDVLISAELMRRATARAEKDWSVADEVRDRLAAAGIEVVDTADGATWKLQ
>NZ_CP015622.1|WP_066567987.1|2561563_2562505_-|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MAGNDSRRGGLRKTNKKGAVKGSGGQVRRGLQGKGPTPKAEDRTYHAAHKRKLERVRRDRGRHDREMPELVVGRNPVLECLHARVPATALYVAEGAANDERLSEAVHVAAGRNLPVLEVNKLELDRMTGNGMHQGIGLAIPPYEYADVHNLIADAAASKKPGMFVILDNITDPRNLGAVIRSVGAFGGNGVIIPERRSASVTAVAWRTSAGTAARVPVAKETNMTRVVKEFQQNGYQVVGLDAGGDHTLDTYDGTDNVVIVVGSEGKGISRLVRENCDTIMSIPTEGWVESLNASVAAGVVLSEFSRQRRIQG
>NZ_CP015622.1|WP_066567984.1|2560734_2561463_-|IclR-family-transcriptional-regulator
MRVLQCFDAENVRLGASNIARRAGLPTSTAHRLVAELVSVKLLERFADGKYGIGTHAWETFVRANPLERLRLQAQSILSDVHDELGEYVSLAVPDFVDRTILYVERFDSPDNRIQILGRHAGRLDLHTTSSGLVMLAFAAPQTIKEVTNRPFVDSYTGEITDGSSIAALLPEIRSTGYIAFMGGLVTENTAIAAPVVDHRGVVRASVGVVARTSDIDVNFVVDIVLEACQKLSARLQNDATY
>NZ_CP015622.1|WP_066568008.1|2572492_2573212_-|FadR-family-transcriptional-regulator
MASSRKPARSRSTTQDAVRDIKHYIRDNRLRTGDLLPSEALLCEELGCSRSAIREAIRALVTLDIVEVRHGYGTFVSKMSLEPLINGMVFRTVLDNDTSVENLFYVVDTREILDLSLGEELIEVFTEDDRELLLDLVLKMREHNDRGDSFVVEDQKFHRALLSRTKNPLIRELNDAFWQIQTEAQPMLNLAMPADIDETIKAHSDIVEALSAGDIQAYRNAVLAHYAPFRRMISAMLKA
>NZ_CP015622.1|WP_066568009.1|2573528_2575145_+|twin-arginine-translocation-signal-domain-containing-protein
MSTNITRRNFLRATGILGAAAGIGATLAACAPDSSNSSGSSTSTAAGTGTANEEGTISAAISYELGTNGYDPMTTTAALTVAANWHTLEGLTEIDPATGQVYAALASEMPSSDAASVDIKLRDGATFHNGDAVTADDVVYSFERVLDPSNNSLYASFIPFIKSVTKKDDSTVTIDLDYATGIIGERLAVVKVVPKSAVEADVSGFDAKPIGTGPYKMTDNGGASKVVKFERNDDYNGPRPARAAAMEWQIIPDASTRTNSLQSGTTMAIDSVPYLSIPQLEGTSTVESVQGFGLLFAMFNCGDNNPFNDLRNRQAFLYALDMDKVVSTGMANQATPATSFVQKEHPNYNQASTVYSLDADKAKALIAETGLTRVNLLCTDHDWVKNCTPLIQESLAAIGLDVSFTERKSADVYNTIDGNPDSFDVVIAPGDPSVFGNDPDLLMRWWFAGDVWTDSRMHWKGSESYDQVQTLLEEGIRATDATEQQDIWNRTFDAISDNVPLYPLFHRKVPTAWNANSLVDFKPISLTGLSFSGVATTE
>NZ_CP015622.1|WP_066568018.1|2575272_2576238_+|ABC-transporter-permease
MSNLLRLVGRRLIALPIMIIGVTLLVFIVMSFSPADPARLALGESASPEALEAYREANGLNDPMMVRYFDFIIGMLQGDLGTTSGGVAVTEIVARAFPITLQLTFWGLIIAVVLALVLGVIAALYRDRWPDQLIRVLSIAALATPSFWLAILLIQWLGTIPGAWGMFPALVTRWVPFSEDPATYFNNIALPAIALAVPVAGSLARVVRTSMVEELDKDYVRTAIGAGIPKTEVVARNVLRNALITPITVIGLRVGYLMGGAVIIEIIFNIQAMGQLILDGVTRNDVYLVQGVTLTVAIAFIIVNIAVDLLYVLVNPRIRSI
>NZ_CP015622.1|WP_066568021.1|2576238_2578242_+|dipeptide/oligopeptide/nickel-ABC-transporter-permease/ATP-binding-protein
MRRKLTTTLENKPGARLSGFRALSLTSKIALVFLVLIFILAIFAPFIAKFDPLASGTPVQPPSGEHWFGTDAIGRDIFSRVAHGARASLIIGLCATGAALLVAAVLGSIAATANKAVSEVLMRVLDVIMSFPGIALAAVFVAVFGNGIPVIVFAISFLYTPQLARIVRANILSQFGEDYVNASKVIGASTPHILIKHVARNCMAPILVFATVLVADAIVFEASLSFINAGVKPPSPSWGNILADGKALLLTGAWWPTFFPGLMILVTVLCLNILSEGLTDTLASPKPKPVSASAKKALKKEEEGTKSASGLVLGHTTREEAHASLLSSLAALSASENKTNNRLVFEGNPTPLLEVRDLKISFPNAHGGITIVDGVDFTVAPGQTMGLVGESGCGKSITAMSIMGLLPPSAKIEGEILFDGKNLLDLKPDELNALRGHEIAMIYQDALSSLNPSMLISAQMKQLTRRGGKRSAEELLELVGLDPKRTLQSYPHELSGGQRQRVLIAMALTRNPRLLIADEPTTALDVTVQQQVVDLLNELRDKLGFAMIFVSHDLALVARLVHKLTVMYAGQVVEQGTTREILVDPRHEYTRGLLGSVLSIEAGVDRLYQVPGTVPSPKEFAAGDRFAPRSEFPNLGLNQKPILRHIEGTEHAYAATDELLAAKGELQ
>NZ_CP015622.1|WP_066568025.1|2578238_2579057_+|ABC-transporter-ATP-binding-protein
MTSPADTRIPILELRNTNVIHKTRTGKLFRPDQVHANKNINFKAYRDEVVGIVGESGCGKSTLARVMVGLQPVTSGEVLFKGKPLKLRGAQRKELGSSVSVVFQDPATSLNPRMTVREQLLDPLRVHKVGDEKTRNQWVSELISMVGLPQSALEVLPRQVSGGQRQRVAIARALALKPDIIVADEPTSALDVSVRAQVLNLLLDLKTELGLGLVFISHDINTVRYVSDRIAVMLAGEIIEENTTSEIFNNAQQDYTRTLLEATPSLLNKTRL
>NZ_CP015622.1|WP_066568031.1|2579524_2580007_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MTNPIIPRVGIATDAHQIEVGKPCWIACLLFEGVDGCEGHSDGDVVAHALVDALLSASALGDLGSFVGVGRPEYDGVSGAQLLKEARELLDSHGFIIGNVAAQLVGQTPKFGPRREEAQQVISEILGAPCSLSATTTDHMGFTGRGEGRAAVATAVVWKA
>NZ_CP015622.1|WP_066568034.1|2579999_2580764_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MSTNRIPVIALLAAAGRGTRLGGPIPKAFVTLRERTLVERSLQAMLTSESVDEIIILVSPDMENYARELLRKRGLLDNPEGIRVRLVHGGGERADSVWAGLQAISLDDATPDAIVLIHDSARALTPPGMIARVARKVHDGATAVIPVLPVADTIKRVSGDLVVDTPNRAELRAVQTPQGFLLSELIAANEKYFADPNPGFMPTDDASLMEWYGSDVVCVQGDPMAFKVTTPIDMMLAQRITDEAEPTIFEVPSD
>NZ_CP015622.1|WP_066568036.1|2580774_2581371_-|CarD-family-transcriptional-regulator
MDFKVGDTVVYPHHGAAMISALEQREMNGVTVDYLVLQINHSDLVVRVPAKNAELVGVRDVVGEEGLQKVFSVLREIDVEEAGNWSRRYKANQERLASGDVNKVAEVVRDLWRRDQDRGLSAGEKRMLSKARQVLVGELALAETVDNEKADAFLGQVDETIARHRADLLGEDGEKKDAFDDFDDSDVDLDDLSFDDED
>NZ_CP015622.1|WP_066568038.1|2581706_2582426_+|response-regulator-transcription-factor
MSPTFIDGNLSGRVLIVEDEIPLARMISLYLGKAGFDTTTIQDGAAAPDKVAHLRPDVIILDLGLPGLDGLEVCKRIRAFTDCYILMLTARGSERDKITGLEIGADDYITKPFNIRELVIRIQSVMRRPRKIDETIQNGLTLSYGSIELDTLAHEVTVQGVGVTLTRTEFELLQALMHKPGEAVSRRDLVTQVWDTTWVGDERIVDVHIGNLRRKLEQPAPGAQFIDTIRGVGYRMSLK
>NZ_CP015622.1|WP_066568044.1|2582422_2583550_+|HAMP-domain-containing-histidine-kinase
MTVQIPSRHSLTFRLLSAQLFVVFISLLAALIVAALVGPAIFNSHLDLSGTIDPRQTDFHIQEAYKDANYMALAAALPTAVLSSIGVSFWLSHRLGQPIWQLSRAAAAMSAGDYQVRVPISDTDREVASLSLAFNSMADQLEHTEDLRRNMLSDLSHEMNTPLAVLLVYLDGLQDGIVEWDPETHAVFAEQLQRLSRLTSDLDDVSRAQEHRFDLVYSTVPIGHLIHNAAGAAAGSYQEKGVALDVAGTASTQLIRVDSQRFAQVLANLLSNALRHTPTGGKVEVRVLRQGVETVVIEVIDNGEGIAPEHVKYVFERYFRAKRSDSDDQSGSGIGLTISRALIEAQGGTLTTESAGLGKGAKFTIRLPLTTGTSN

Crispr_ID: NZ_CP015622_5

• CRISPR_ID: NZ_CP015622_5
• CRISPR_location: 2760151-2760246
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP015622_5

Consensus_repeat	Method
AACCAAACCACAGTGCCCACGGAC	CRISPRCasFinder

spacers of NZ_CP015622_5

>5.1|2760175|48|NZ_CP015622|CRISPRCasFinder
GCCCAATACTTGATCCGTGGGCATGTGTGACCGGTTTCGAAGCCGAAT

CRISPR arrays and Neighbor proteins around NZ_CP015622_5

CRISPR arrays

The CRISPR arrays of NZ_CP015622_5

>merge|NZ_CP015622|5|2760151-2760246|CRISPRCasFinder
AACCAAACCACAGTGCCCACGGACGCCCAATACTTGATCCGTGGGCATGTGTGACCGGTTTCGAAGCCGAATAACCAAACCACAGTGCCCACGGCC

>NZ_CP015622|5|5|2760151-2760246|CRISPRCasFinder
AACCAAACCACAGTGCCCACGGAC	GCCCAATACTTGATCCGTGGGCATGTGTGACCGGTTTCGAAGCCGAAT
AACCAAACCACAGTGCCCACGGCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015622.1|WP_066568523.1|2767732_2767927_+|hypothetical-protein	unknown	unknown	gnl|CDD|227214
NZ_CP015622.1|WP_066568475.1|2751396_2752119_-|AAA-family-ATPase	unknown	unknown	gnl|CDD|226425
NZ_CP015622.1|WP_066568498.1|2758433_2760029_+|cytochrome-b/b6-domain-containing-protein	unknown	unknown	gnl|CDD|223021
NZ_CP015622.1|WP_066569972.1|2760289_2761318_-|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|213192
NZ_CP015622.1|WP_066568515.1|2765349_2766264_-|nucleoside-hydrolase	unknown	unknown	gnl|CDD|224868
NZ_CP015622.1|WP_066568486.1|2754085_2755411_-|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl|CDD|349924
NZ_CP015622.1|WP_157776028.1|2764007_2764439_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015622.1|WP_066568505.1|2762796_2763789_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015622.1|WP_066568468.1|2749582_2750149_-|tripartite-tricarboxylate-transporter-TctB-family-protein	unknown	unknown	gnl|CDD|377815
NZ_CP015622.1|WP_066568521.1|2766735_2767728_+|SPFH-domain-containing-protein	unknown	unknown	gnl|CDD|259800
NZ_CP015622.1|WP_066568496.1|2757090_2757918_-|metal-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|270317
NZ_CP015622.1|WP_066568526.1|2767923_2768514_+|DNA-3-methyladenine-glycosylase-I	unknown	unknown	gnl|CDD|377025
NZ_CP015622.1|WP_066568492.1|2756089_2757091_-|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224058
NZ_CP015622.1|WP_066569968.1|2752115_2752850_-|AAA-family-ATPase	unknown	unknown	gnl|CDD|226425
NZ_CP015622.1|WP_066568489.1|2755427_2756093_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|224922
NZ_CP015622.1|WP_066568483.1|2752908_2754093_+|MFS-transporter	unknown	unknown	gnl|CDD|341042
NZ_CP015622.1|WP_066568472.1|2750148_2751171_-|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|225722
NZ_CP015622.1|WP_066568500.1|2761308_2761953_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl|CDD|223692
NZ_CP015622.1|WP_066568502.1|2761949_2762684_-|glycosyl-transferase-family-9	unknown	unknown	unknown
NZ_CP015622.1|WP_066568511.1|2764517_2765336_-|NADPH-dependent-oxidoreductase	unknown	unknown	gnl|CDD|380322

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP015622.1|WP_066568523.1|2767732_2767927_+|hypothetical-protein	gnl|CDD|227214	COG4877, COG4877, Uncharacterized protein conserved in bacteria [Function unknown].	5.53988e-22
NZ_CP015622.1|WP_066568475.1|2751396_2752119_-|AAA-family-ATPase	gnl|CDD|226425	COG3910, COG3910, Predicted ATPase [General function prediction only].	1.32141e-103
NZ_CP015622.1|WP_066568498.1|2758433_2760029_+|cytochrome-b/b6-domain-containing-protein	gnl|CDD|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	4.18836e-14
NZ_CP015622.1|WP_066569972.1|2760289_2761318_-|ATP-binding-cassette-domain-containing-protein	gnl|CDD|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	9.91732e-30
NZ_CP015622.1|WP_066568515.1|2765349_2766264_-|nucleoside-hydrolase	gnl|CDD|224868	COG1957, URH1, Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism].	1.2787e-101
NZ_CP015622.1|WP_066568486.1|2754085_2755411_-|M20/M25/M40-family-metallo-hydrolase	gnl|CDD|349924	cd05675, M20_yscS_like, M20 Peptidase, carboxypeptidase yscS-like. Peptidase M20 family, yscS (GlyX-carboxypeptidase, CPS1, carboxypeptidase S, carboxypeptidase a, carboxypeptidase yscS, glycine carboxypeptidase)-like subfamily. This group contains proteins that have been uncharacterized to date with similarity to vacuolar proteins involved in nitrogen metabolism which are essential for use of certain peptides that are sole nitrogen sources. YscS releases a C-terminal amino acid from a peptide that has glycine as the penultimate residue. It is synthesized as one polypeptide chain precursor which yields two active precursor molecules after carbohydrate modification in the secretory pathway. The proteolytically unprocessed forms are associated with the membrane, whereas the mature forms of the enzyme are soluble. Enzymes in this subfamily may also cleave intracellularly generated peptides in order to recycle amino acids for protein synthesis.	1.84122e-175
NZ_CP015622.1|WP_066568468.1|2749582_2750149_-|tripartite-tricarboxylate-transporter-TctB-family-protein	gnl|CDD|377815	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family. This family consists of several hypothetical bacterial proteins of around 150 residues in length. This family was formerly known as DUF1468.	4.77213e-11
NZ_CP015622.1|WP_066568521.1|2766735_2767728_+|SPFH-domain-containing-protein	gnl|CDD|259800	cd03402, SPFH_like_u2, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model summarizes an uncharacterized family of proteins similar to stomatin, prohibitin, flotillin, HflK/C (SPFH) and podocin. The conserved domain common to the SPFH superfamily has also been referred to as the Band 7 domain. Many superfamily members are associated with lipid rafts. Individual proteins of the SPFH superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease, and in cancer invasion and metastasis. Mutations in the podocin gene give rise to autosomal recessive steroid resistant nephritic syndrome.	2.5627e-125
NZ_CP015622.1|WP_066568496.1|2757090_2757918_-|metal-ABC-transporter-substrate-binding-protein	gnl|CDD|270317	cd13599, PBP2_lipoprotein_Gna1946, The membrane-associated lipoprotein Gna1946 from Neisseria meningitidis; the type 2 periplasmic binding protein fold. Gna1946 shares significant structural and sequence homology with the periplasmic substrate-binding domain of ATP-binding cassette (ABC) transporter involved in uptake of methionine (MetQ). The members of the MetQ-like family include the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum, the membrane-associated lipoprotein-9 GmpC from Staphylococcus aureus, and Toll-like receptor 2-activating lipoprotein IlpA from Vibrio vulnificus. They all function as a receptor for methionine. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.	1.43202e-79
NZ_CP015622.1|WP_066568526.1|2767923_2768514_+|DNA-3-methyladenine-glycosylase-I	gnl|CDD|377025	pfam03352, Adenine_glyco, Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.	4.66239e-101
NZ_CP015622.1|WP_066568492.1|2756089_2757091_-|methionine-ABC-transporter-ATP-binding-protein	gnl|CDD|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	3.05444e-136
NZ_CP015622.1|WP_066569968.1|2752115_2752850_-|AAA-family-ATPase	gnl|CDD|226425	COG3910, COG3910, Predicted ATPase [General function prediction only].	1.17808e-100
NZ_CP015622.1|WP_066568489.1|2755427_2756093_-|ABC-transporter-permease	gnl|CDD|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	7.02867e-89
NZ_CP015622.1|WP_066568483.1|2752908_2754093_+|MFS-transporter	gnl|CDD|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.04838e-19
NZ_CP015622.1|WP_066568472.1|2750148_2751171_-|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl|CDD|225722	COG3181, COG3181, Uncharacterized protein conserved in bacteria [Function unknown].	4.9962e-100
NZ_CP015622.1|WP_066568500.1|2761308_2761953_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl|CDD|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	5.27484e-13
NZ_CP015622.1|WP_066568511.1|2764517_2765336_-|NADPH-dependent-oxidoreductase	gnl|CDD|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	2.03872e-97

Protein sequences

>NZ_CP015622.1|WP_066568498.1|2758433_2760029_+|cytochrome-b/b6-domain-containing-protein
MDGTSPQNKISATPPAPGNAIPAPGGAIPAPINNAQNPVSQPDPPKLPAPGSAIPTPGGAVPTPGMAIPVPGTATPAVPAPPTAPLTPAAPGSAIPAPGLSTPAVSAPGNAVSTPGIASPTPGAAIPAPGMATPSAPGSSAPSIPVPGSVTPPAPGIAAPGATLPAPGIPTPGAALPIPGAPGVPGIPQAPGTPGAPTAAATPVKPVFQDAEKLPRTDEAGNTKKELPLRVRLAQPITRKQWAMTLGVFFLGAVVVAAVAVTLTKWAFTTEWLQDFVEKYPGKYDTPAGAPVGIPAWLSWQHFFNMFFMVLIIKTGIEINRTRRPKGYWTPKKGGKKISLTLWIHLVLDLLWIINGAVFIVLLFATGQWMRIVPTSWDVFPNALSAGLQYLSLDWPTENGWANYNSLQELTYFFTIFIAAPLSIVSGFRMSSYWPKNNAAMNKVLPIGFARALHMPVMVYYLVFICIHVFLVFATGALRNFNHMYAGEDVVNWVGFGWFVASLVVIIGAFVALRPTIIAPVAKKFGQVTAR
>NZ_CP015622.1|WP_066568496.1|2757090_2757918_-|metal-ABC-transporter-substrate-binding-protein
MITSTARKIGALIGAVALSASLVACSSDSSSNENLIKVGTSPGPYSQLFQDGIDPILTEQGFEIEYTEFSDLQQADTAVDEGSVDLNVDQHTAYLEVFNRERGGNLASLVEIPTVPAKLYSERYGSLDEVADGQTVGIPLDASNQSRAYNILAKAGWITLKEGHDPVQLTENDIAENPHNLKITPMDSATIPRALQDLDWGVIPGSISFSSGVDPELALLDEDLRDSLILVAVTTEDKTDTEWAQAVIDAYQSDEFASFLEEENSNGYWFVPDYK
>NZ_CP015622.1|WP_066568492.1|2756089_2757091_-|methionine-ABC-transporter-ATP-binding-protein
MPAVSFRNVSKSFGKLHALEDISFDVEQGQIFGVVGTSGAGKSTLIRTVNGLETPTAGVVEVLGVEPATLGARELRQLRANVSMVFQHYNLLSSKTVAENVAMPLVLAGVSTREINERVAKVLDLVGLADRAGNRPKQLSGGQQQRVGIARALVTNPKILLCDEPTSALDPLTTEQILELIVKINAELGLTVLIITHQMDVVAKIADGVAVLENGGLLETGPVDEVFAAPQKPLTQRFVDTVLPSKLSDEVVWEAKRAEGVVVKLSYRDHAARNLIADLGERFGVQVSMLQAAEAPLRRSIVGTLVLSLTGARKKDAAQWAAEQDGIDAEVLS
>NZ_CP015622.1|WP_066568489.1|2755427_2756093_-|ABC-transporter-permease
MTELFDTRVSNQQYLDAMYETIYMVGISLFIGTLLGIPIAVLLVLTRKEGLKPNAVIYNVLNVIVNVIRSLPFIILMVAIVPFTRFISGTSIGTTAALVPLTIYIAPYIGRLIENSLLEVPDGIMEAAQAMGASTWQTIRYFLLPEAKSSIVLAMTTACVGLIGATAMAGVIGGGGVGDLAVSYGYQQFDTVAMIATVIILIIVVQGIQSLGNWLAARSRY
>NZ_CP015622.1|WP_066568486.1|2754085_2755411_-|M20/M25/M40-family-metallo-hydrolase
MALYDETLTLLQELIRNACVNDLTPDSGQEVRNADSLERFFAGTPNVSITRMEPRPGRTSIIVTVPGTDEDAEPLTLLGHTDVVPIDLPKWTKDPFGAEISDGQIWGRGSVDMLFITATQAAVTREIAREGGLRGTLTFVGVADEEARGGLGAKWLSEEHPELFSWKNCLSESGGSHLPVSDGSDAVIINVGEKGAAQRRIHVNGDAGHGSIPFDRDSAIVKIGEVARRIAAADLKVAKDDIWQGFVQAHRFDAATEQALLDGTDPDAYAEFGGLARFAHAVSHLTIAQTVVRAGQAINVLPSHAYLELDIRTLPGQTNDYVDDMLRTALGDLADEVEIEHLISEEATVSPTDSRLYSTLEKVLGDFFPGAPVVPVISSGGSDLRFGRRLGGVGYGFAVHARERTLAEAMGQLHSHDEALYLEDLELTVQGYEAVVREFLS
>NZ_CP015622.1|WP_066568483.1|2752908_2754093_+|MFS-transporter
MNEITHPYRTRVLGGLAFAQVTIGLSNGVTLSMGSLLAAHLAGASWGGSAATLTTVGAAIFSIPLSKMVSRYDRRTSLSTGMLLGCVGAILAIVGAQLGLFPVVLLAFLFLGSMSAVNLQARFAATDVASERTRGRDLSLVVWSTTIGAIAGPNLFEPSTRFSQAVGLEEHAGAYLLCLIGQIIAIAVWQFTLPKGLKPEVIPNKTQEKSKLTPKAMQAISSVATAHFSMVGLMSMAAIHMQGHGAGLTIIGFTISLHIAGMYALSPVFGLLTDKFGRNFTIFSGFAMLAASAALLLIWPEPQWAMIASMILLGLGWNSALVGSSALLVDATPPHDRTYAQGRSDLTMNLAGASGGLIAGPLIALGGMPTLAGVVLAVVLLQFLISSRTSLKSS
>NZ_CP015622.1|WP_066569968.1|2752115_2752850_-|AAA-family-ATPase
MFLTKVELLDQPKSLPGYLSTLAIVTSLDVSPLEFHAPITVITGENGVGKSTLIEAIAVGMGLNPAGGSRHAHFDRDGDIVSSLHHSLKLVRRRNPRDAFFFRGETWYNTASYYGSLEGGNLLDLHDMSHGESIFAVIERRFHGDGFFILDEPEAGLSMLRQLELLGKLANLARNGAQIVMATHSPILLAIPGAEIVEITSSGIARVSFEEAEAVQAAREFVSDPRGTADFLTSQSSDFLEEQP
>NZ_CP015622.1|WP_066568475.1|2751396_2752119_-|AAA-family-ATPase
MMPFITDLAALEFRGSAPHWTEKVPAFQVLREQRVLDFRAPVTVITGENGVGKSTLLEAIAINAGFGTEGGEYTGKFNPFDNPLKNVAKAHKGPEPMRGFFLRAESYFNVAGTYQDEAPGWVNLHHMSHGESVMHIVQHTFVGRGLYLMDEPESGLSFIRQMAILAELHALSQSGSQIIIVTHSPVLMAIPGADIWEFSADSELRRGVDLEETTAFRALRDFFEDPEEIAEFMVDVMRES
>NZ_CP015622.1|WP_066568472.1|2750148_2751171_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MAEVGAEPGSSAQSKKSNTSKTKQFIVGTAAIAITAIAAFFSIQSASGGEDIRSNMTLIAPAAAGGGWDTFQREQQQAMRVNNIVNNIQVVNIPGAGGTIGMGKLSTMTAPNTLMVGGTGHIAAQIQFDTPAKIQDITPIARVVEEFDIITVPANSPYNTLDELIEGWQADPAGVSWTGGGSFDQLVMTEIALAAGIDPKQTTFIPSDGGGEAIQALLNGTAKASTGGFADMYPQVEAGRLKVLGIAAGERLPGTDIPTLVEQGYDVTLTNWRAMFAPPGLSEEQITELREIVAESVATPEWQAAVERNYWMSAPLEGEELDQFVQEEIERIDQLFKEMG
>NZ_CP015622.1|WP_066568468.1|2749582_2750149_-|tripartite-tricarboxylate-transporter-TctB-family-protein
MNITEQSGDSHIDIPESHQLPGPRPVGEGTFWEGRSGLIMPAILTAFSLYLLIGVLNMDVGNAAFPGPRFFPTILGIAGLLVAVALIIQTIKFPMHPENESGRSWKFHSDYVSLAWAIGGFFIFAVLLPYLGWILAGALLFWTMTRAFGSQRPAFDVLISLMMSSIVYLAFDVGLGLNLPSGLLGGGF
>NZ_CP015622.1|WP_066569972.1|2760289_2761318_-|ATP-binding-cassette-domain-containing-protein
MAITQIIGPSGSGLTRALEERYRATPGAVMLTADPRAHITYLRATVAEELAFGLEQRGIAPAQMREKVARIGLGLEQLLKRSPAQLSGGQTRRLAIGAVAILEAPTMLLDDPFSGLDTSSRAQLIALLESYEGDVIVAAHKPWLDAPTTYLGNMDVPVLPAPVEFSGDARTFSGISGSRGSAHRRWWQFHNPQPQFQIGPVDISVRAGEVLWLRGSNGSGKSTLLRSLADQPGTALMLQNPIDQVIDATVAQWIPGSDSQEHPLDLSQRELRLAQCDAALRRDPDVLLADEPDVGLDIGGRNAIHQRFADFLRSGGALVLTCHDETFIADVAAYAQVSELAL
>NZ_CP015622.1|WP_066568500.1|2761308_2761953_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MNPLTWIMGALSMWIVVLGVNDLRLSLAVVVLAQIVALLRVHNVAVLASTALLAIPVLVSMMLIHMPYSTDGWLVALALTARFSALMSVFLLAATAITIPELVKSLYRWPKLAYIVGSALQMVPQGKHTLATIRDANALRGRSTKGPVQAVKYVGLPLITHLLSAGASRAIPLEVAGLDRPGPRTVLVEVVEGRVEKHLRWLLPLSAIGVVLWL
>NZ_CP015622.1|WP_066568502.1|2761949_2762684_-|glycosyl-transferase-family-9
MSRISQLMVALGGLLIAATWLYVVLVRPTDWESVGGSTEALITLVGYVGGTIALLIGVLPTLPARTIAIIPVALVLNILLGQVVGSIGIPLYLDAVGTVLVAALAGSRAGLATGALSAVVWSLFNPLALPFAAGSALTGWLAGVAISKGALKNIFAAIISGALIGIITGAVAAPVAAFVYGGTAGVGTGALVSLFREMGNSLLASVTWQSFISDPLDKAIIMVIVFVVIKSLPKRTTRALAPQS
>NZ_CP015622.1|WP_066568505.1|2762796_2763789_-|hypothetical-protein
MTVKFGLYPAGRDVSFVRATLDDVRWLMSEHPVYWESRVGSSPFFREERTDIQFRKIFEGHSSPQDWLHLLQPQNISQRLLFVDIDVPGWIALIADSFDYTYLEHMTQGLFCTVAERDNFPPVDDPNGVAQIRIRYNLREPSLDFTAGDGDYLQIELASTTQTSEGVSNGTYVSGQPWYKYLIQAQGLAGYEGLDLPLVAQVPDHARAGYPPYLGNSAEEKFRLGTWSQAAHKNPEASAEFLKLLPFDHRGQDRIVDFFNTTKVAAWLENSYGLRWNDPRFYEGESLLYIVGLPDITRDPFTPRIPLEDYRRFQAIDLERNLTLIENGKF
>NZ_CP015622.1|WP_157776028.1|2764007_2764439_-|hypothetical-protein
MTVPKGLKHVLIEGTDGRFDSRFQLYRASFEEIVEETSASLFFAHRYHPWIAQDTQVYTGGPGDWTDKVSGDVGRGHFVVSETSNPAWCFAAPFIKESQAAMATIRPWQGRGVAKKPEAFSVKYDPWAPYIEVEYYDFRASSS
>NZ_CP015622.1|WP_066568511.1|2764517_2765336_-|NADPH-dependent-oxidoreductase
MPTPEELLAARYGAPVSWTPPQWNHTLDIIHQHRSVRRWLDKPVADDTIRTIISAAQSGSTSSNKQVISVIVVKDPEARKALSEISQQMFPHLEQVPVVLIWLIDFSRIRYAATREQLPTGAHDYLDEAALGFLDAGVAAQNAAIAAESLGLGTLYLGSVRNDVEAVQKLLGIPPEIVPVLGLEIGHPDPTEPAGIKPRLPQEAIVHWDTYSTPDPTHIDAYDQALDTYFSRYGQHQLWSTQMAHRAASTSTTKTNRKFLRRVLERAGFGLK
>NZ_CP015622.1|WP_066568515.1|2765349_2766264_-|nucleoside-hydrolase
MIPVLIDCDTGIDDALALIYLAALHKRGEIQLLGATTTAGNVDVKQTAINTRWVLDQCVLPEIPVAAGLPGPKHVPLVTTPETHGDHGLGYINPGVIDVPAGGWQEMWQEHLSDQATRLIVTGPATNLAAFGPVKNVTLMGGTYLYPGNTTPTAEWNTWVDPHAAKEAFAQAEQPITVCSLGVTEQFTINPDSLSALIDALGEEPIAQHLPEMLRFYFEFHQAQGEGYLAQIHDLLTCMIALGKIPFTGKEVTVDVEADSSLMRGTTVADTRGHWDKPANAFLIDSVDIAAAHAELLRAVTSTS
>NZ_CP015622.1|WP_066568521.1|2766735_2767728_+|SPFH-domain-containing-protein
MNTTPPVPHEEATPGVVANEPVGHEGARANIKEKKVWSLGAGVTAVALVALIAIMIASGVFFVQAINNLENYGGNGADLALLITSIIVFTVALVIALTSVKVVSPGHTLTVQFFGRYIGTLRRTGLSFVPPLSITKRVSVRVRNFETNEAKVNDYNGNPINISSIIVWQVADTAQASFSVEDFEEFLHQQAESALRHVATQHPYDSPVDGRISLRGSTDDVSEELADEVAQRAAVAGLEIIEARISSLSYAPEIAQAMLQRQQASAIVDAREKIVEGAVTMVETALEQLEQRQIVDLDPERRAAMVSNLLVVLCSDTNAQPMVNAGSLYH
>NZ_CP015622.1|WP_066568523.1|2767732_2767927_+|hypothetical-protein
MARKQVPLRLDPAVYDAIARWSADEARSTNAQIEVMLRDQLRKAGRLPKNIGEIPKPGRPKENP
>NZ_CP015622.1|WP_066568526.1|2767923_2768514_+|DNA-3-methyladenine-glycosylase-I
MSSLIIGDDGLKRPSWAAQDPQMREYYDTEWGMPIREEQALFERISLEAFQSGLSWAIILRKRENFRAAFANFDPELIARFTDTDIDRLMNDAGIVRYNRKILATINNAKATLQLREKGGLVDFVWSFKPIETPQPQSLEEIPTQSPESVALSKALKKEGFSFVGPTTMFALMEAIGIVDTHLMGSHRRGSSGVWV

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	MN855763	Myoviridae sp. isolate 210, complete genome	97870-97902	5	0.848
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	NC_048660	Aeromonas phage phiA8-29, complete genome	78858-78890	6	0.818
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	349826-349858	6	0.818
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	KY290955	Aeromonas phage 65.2, complete genome	112460-112492	6	0.818
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	MH622943	Myoviridae sp. isolate ctbc_4, complete genome	209963-209995	6	0.818
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	NC_015251	Aeromonas phage 65, complete genome	112479-112511	6	0.818
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	NZ_AP017978	Neochlamydia sp. S13 plasmid pS13, complete sequence	145378-145410	6	0.818
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	NZ_LR594660	Variovorax sp. PBL-H6 plasmid 2	767882-767914	7	0.788
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	NZ_LR594667	Variovorax sp. SRS16 plasmid 2	70275-70307	7	0.788
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	NZ_LR594690	Variovorax sp. WDL1 plasmid 2	70095-70127	7	0.788
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	NZ_LR594672	Variovorax sp. PBL-E5 plasmid 2	70275-70307	7	0.788
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	MH576962	Streptomyces phage Satis, complete genome	125077-125109	7	0.788
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	MK620894	Streptomyces phage Kradal, complete genome	124741-124773	7	0.788
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	112299-112331	7	0.788
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	242157-242189	7	0.788
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	613568-613600	7	0.788
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	52360-52392	7	0.788
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	78756-78788	7	0.788
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	806452-806484	7	0.788
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	NZ_CP024200	Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence	535991-536023	7	0.788
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	NZ_CP024200	Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence	43941-43973	7	0.788
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	NZ_CP010146	Escherichia coli strain D5 plasmid A, complete genome	69021-69053	7	0.788
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	MT684590	Streptomyces phage LilMartin, complete genome	90558-90590	8	0.758
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	MT897905	Streptomyces phage MulchMansion, complete genome	91174-91206	8	0.758
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	MH590593	Mycobacterium phage Rabinovish, complete genome	95340-95372	8	0.758
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	MK359311	Mycobacterium phage SmallFry, complete genome	93381-93413	8	0.758
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	MK450425	Mycobacterium phage Shelob, complete genome	95329-95361	8	0.758
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	MK977711	Streptomyces phage Evy, complete genome	94901-94933	8	0.758
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	MN444876	Streptomyces phage Daubenski, complete genome	95396-95428	8	0.758
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	KM652554	Streptomyces phage Jay2Jay, complete genome	95700-95732	8	0.758
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	MN096371	Streptomyces phage Braelyn, complete genome	94678-94710	8	0.758
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	MF358541	Streptomyces phage Warpy, complete genome	95179-95211	8	0.758
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	NC_023696	Mycobacterium phage Dandelion, complete genome	97627-97659	8	0.758
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	MK359349	Mycobacterium phage FoxtrotP1, complete genome	95384-95416	8	0.758
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	GQ303260	Mycobacterium phage ET08, complete genome	93263-93295	8	0.758
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	MK878897	Mycobacterium phage Blackbrain, complete genome	93395-93427	8	0.758
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	MG872839	Mycobacterium phage LifeSavor, complete genome	94000-94032	8	0.758
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	MF347636	Streptomyces phage NootNoot, complete genome	93421-93453	8	0.758
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	DQ398053	Mycobacteriophage Catera, complete genome	92452-92484	8	0.758
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	JN204348	Mycobacterium phage Sebata, complete genome	95328-95360	8	0.758
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	NC_008207	Mycobacterium phage Catera, complete genome	92452-92484	8	0.758
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	NC_042010	Streptomyces phage Paradiddles, complete genome	95724-95756	8	0.758
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	KJ019089	Synechococcus phage ACG-2014j isolate Syn7803US23, complete genome	160796-160828	8	0.758
NZ_CP015622_2	2.13|377303|32|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR	377303-377334	32	KX349320	Cyanophage S-RIM12 isolate RW_29_1109, complete genome	134861-134892	8	0.75
NZ_CP015622_2	2.13|377303|32|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR	377303-377334	32	KX349314	Cyanophage S-RIM12 isolate RW_07_1112, complete genome	134862-134893	8	0.75
NZ_CP015622_2	2.13|377303|32|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR	377303-377334	32	KX349316	Cyanophage S-RIM12 isolate RW_22_0110, complete genome	134864-134895	8	0.75
NZ_CP015622_2	2.13|377303|32|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR	377303-377334	32	KX349312	Cyanophage S-RIM12 isolate RW_04_0709, complete genome	134546-134577	8	0.75
NZ_CP015622_2	2.13|377303|32|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR	377303-377334	32	KX349315	Cyanophage S-RIM12 isolate RW_14_0101, complete genome	134556-134587	8	0.75
NZ_CP015622_2	2.13|377303|32|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR	377303-377334	32	KX349317	Cyanophage S-RIM12 isolate RW_25_0210, complete genome	134704-134735	8	0.75
NZ_CP015622_2	2.13|377303|32|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR	377303-377334	32	NC_015285	Prochlorococcus phage Syn33, complete genome	134856-134887	8	0.75
NZ_CP015622_2	2.13|377303|32|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR	377303-377334	32	KX349309	Cyanophage S-RIM12 isolate Np_22_1112, complete genome	134699-134730	8	0.75
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	NC_048046	Caulobacter phage CcrPW, complete genome	251481-251513	9	0.727
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	JX100810	Caulobacter phage CcrColossus, complete genome	241750-241782	9	0.727
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	MN241318	Enterococcus phage PEf771, complete genome	77905-77937	9	0.727
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	MN027503	Enterococcus phage vB_OCPT_Ben, complete genome	106963-106995	9	0.727
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	CAJDKA010000002	Enterococcus phage 163 genome assembly, contig: phage163-genome, whole genome shotgun sequence	139684-139716	9	0.727
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	MT856905	Enterococcus phage vB_EfaM_A2, complete genome	43821-43853	9	0.727
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	MW004544	Enterococcus phage EFGrKN, complete genome	43377-43409	9	0.727
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	MH791397	UNVERIFIED: Enterococcus phage EfsSzw-1, complete genome	37546-37578	9	0.727
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	MT909815	Enterococcus phage iF6, complete genome	34233-34265	9	0.727
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	MH880817	Enterococcus phage EfV12-phi1, complete genome	45108-45140	9	0.727
NZ_CP015622_2	2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT	376693-376725	33	NZ_LR134452	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 10, complete sequence	256477-256509	9	0.727
NZ_CP015622_2	2.14|377363|34|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR	377363-377396	34	NZ_CP010408	Streptomyces vietnamensis strain GIMV4.0001 plasmid pSVL1, complete sequence	248549-248582	9	0.735
NZ_CP015622_2	2.13|377303|32|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR	377303-377334	32	NZ_CP014276	Martelella sp. AD-3 plasmid unnamed1, complete sequence	86132-86163	10	0.688
NZ_CP015622_2	2.14|377363|34|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR	377363-377396	34	NZ_CP011808	Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-1, complete sequence	40726-40759	10	0.706

1. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to MN855763 (Myoviridae sp. isolate 210, complete genome) position: , mismatch: 5, identity: 0.848

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
aaggacggtgctctaccaattgagctattcatg	Protospacer
******** **********.*******. **.*

2. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to NC_048660 (Aeromonas phage phiA8-29, complete genome) position: , mismatch: 6, identity: 0.818

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
aaatcaagagctctaccaactgagctacactcg	Protospacer
**.   .*********************** **

3. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 6, identity: 0.818

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
catggcggcgctctaccaactgagctacacgag	Protospacer
 * *.*** *********************. *

4. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to KY290955 (Aeromonas phage 65.2, complete genome) position: , mismatch: 6, identity: 0.818

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
aaatcagaagctctaccaactgagctacacccg	Protospacer
**.   *.********************** **

5. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to MH622943 (Myoviridae sp. isolate ctbc_4, complete genome) position: , mismatch: 6, identity: 0.818

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
aaatcagaagctctaccaactgagctacacccg	Protospacer
**.   *.********************** **

6. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to NC_015251 (Aeromonas phage 65, complete genome) position: , mismatch: 6, identity: 0.818

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
aaatcagaagctctaccaactgagctacacccg	Protospacer
**.   *.********************** **

7. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017978 (Neochlamydia sp. S13 plasmid pS13, complete sequence) position: , mismatch: 6, identity: 0.818

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
aagacaggagctctaccaactgagctatacgcc	Protospacer
***.  *********************.**.* 

8. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR594660 (Variovorax sp. PBL-H6 plasmid 2) position: , mismatch: 7, identity: 0.788

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
aaagcaggcgctctaccaattgagctacacccc	Protospacer
**.*  ** **********.********** * 

9. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR594667 (Variovorax sp. SRS16 plasmid 2) position: , mismatch: 7, identity: 0.788

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
aaagcaggcgctctaccaattgagctacacccc	Protospacer
**.*  ** **********.********** * 

10. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR594690 (Variovorax sp. WDL1 plasmid 2) position: , mismatch: 7, identity: 0.788

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
aaagcaggcgctctaccaattgagctacacccc	Protospacer
**.*  ** **********.********** * 

11. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR594672 (Variovorax sp. PBL-E5 plasmid 2) position: , mismatch: 7, identity: 0.788

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
aaagcaggcgctctaccaattgagctacacccc	Protospacer
**.*  ** **********.********** * 

12. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to MH576962 (Streptomyces phage Satis, complete genome) position: , mismatch: 7, identity: 0.788

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
gaagacggcgctctaccgactgagctacaaggg	Protospacer
.*.***** ********.*********** . *

13. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to MK620894 (Streptomyces phage Kradal, complete genome) position: , mismatch: 7, identity: 0.788

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
gaagacggcgctctaccgactgagctacaaggg	Protospacer
.*.***** ********.*********** . *

14. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.788

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
gagaccggtgctctaccaattgagctacactcc	Protospacer
.**. *** **********.********** * 

15. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.788

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
gagaccggtgctctaccaattgagctacactcc	Protospacer
.**. *** **********.********** * 

16. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 7, identity: 0.788

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
gagaccggtgctctaccaattgagctacactcc	Protospacer
.**. *** **********.********** * 

17. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 7, identity: 0.788

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
gagaccggtgctctaccaattgagctacactcc	Protospacer
.**. *** **********.********** * 

18. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.788

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
gagaccggtgctctaccaattgagctacactcc	Protospacer
.**. *** **********.********** * 

19. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 7, identity: 0.788

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
gagaccggtgctctaccaattgagctacactcc	Protospacer
.**. *** **********.********** * 

20. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024200 (Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence) position: , mismatch: 7, identity: 0.788

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
aaagcaggcgctctcccaactgagctacacccc	Protospacer
**.*  ** ***** *************** * 

21. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024200 (Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence) position: , mismatch: 7, identity: 0.788

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
aaagcaggcgctctcccaactgagctacacccc	Protospacer
**.*  ** ***** *************** * 

22. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010146 (Escherichia coli strain D5 plasmid A, complete genome) position: , mismatch: 7, identity: 0.788

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
aaagcaggcgctctaccaactgagctaaaccgg	Protospacer
**.*  ** ****************** **  *

23. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to MT684590 (Streptomyces phage LilMartin, complete genome) position: , mismatch: 8, identity: 0.758

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
gaggatggtgctctaccaactgagctaccggaa	Protospacer
.****.** *******************  . .

24. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to MT897905 (Streptomyces phage MulchMansion, complete genome) position: , mismatch: 8, identity: 0.758

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
gaggatggtgctctaccaactgagctaccggaa	Protospacer
.****.** *******************  . .

25. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to MH590593 (Mycobacterium phage Rabinovish, complete genome) position: , mismatch: 8, identity: 0.758

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
caggccggtgctctaccaactgagctatgacgg	Protospacer
 *** *** ******************..   *

26. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to MK359311 (Mycobacterium phage SmallFry, complete genome) position: , mismatch: 8, identity: 0.758

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
caggccggtgctctaccaactgagctatgacgg	Protospacer
 *** *** ******************..   *

27. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to MK450425 (Mycobacterium phage Shelob, complete genome) position: , mismatch: 8, identity: 0.758

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
caggccggtgctctaccaactgagctatgacgg	Protospacer
 *** *** ******************..   *

28. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to MK977711 (Streptomyces phage Evy, complete genome) position: , mismatch: 8, identity: 0.758

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
cacaccgaagctctaccaactgagctacatgcc	Protospacer
 * . **.*********************..* 

29. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to MN444876 (Streptomyces phage Daubenski, complete genome) position: , mismatch: 8, identity: 0.758

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
cacaccgaagctctaccaactgagctacatgcc	Protospacer
 * . **.*********************..* 

30. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to KM652554 (Streptomyces phage Jay2Jay, complete genome) position: , mismatch: 8, identity: 0.758

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
cacaccgaagctctaccaactgagctacatgcc	Protospacer
 * . **.*********************..* 

31. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to MN096371 (Streptomyces phage Braelyn, complete genome) position: , mismatch: 8, identity: 0.758

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
cacaccgaagctctaccaactgagctacatgcc	Protospacer
 * . **.*********************..* 

32. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to MF358541 (Streptomyces phage Warpy, complete genome) position: , mismatch: 8, identity: 0.758

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
cacaccgaagctctaccaactgagctacatgcc	Protospacer
 * . **.*********************..* 

33. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to NC_023696 (Mycobacterium phage Dandelion, complete genome) position: , mismatch: 8, identity: 0.758

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
caggccggtgctctaccaactgagctatgacgg	Protospacer
 *** *** ******************..   *

34. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to MK359349 (Mycobacterium phage FoxtrotP1, complete genome) position: , mismatch: 8, identity: 0.758

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
caggccggtgctctaccaactgagctatgacgg	Protospacer
 *** *** ******************..   *

35. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to GQ303260 (Mycobacterium phage ET08, complete genome) position: , mismatch: 8, identity: 0.758

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
caggccggtgctctaccaactgagctatgacgg	Protospacer
 *** *** ******************..   *

36. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to MK878897 (Mycobacterium phage Blackbrain, complete genome) position: , mismatch: 8, identity: 0.758

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
caggccggtgctctaccaactgagctatgacgg	Protospacer
 *** *** ******************..   *

37. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to MG872839 (Mycobacterium phage LifeSavor, complete genome) position: , mismatch: 8, identity: 0.758

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
caggccggtgctctaccaactgagctatgacgg	Protospacer
 *** *** ******************..   *

38. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to MF347636 (Streptomyces phage NootNoot, complete genome) position: , mismatch: 8, identity: 0.758

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
cacaccgaagctctaccaactgagctacatgcc	Protospacer
 * . **.*********************..* 

39. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to DQ398053 (Mycobacteriophage Catera, complete genome) position: , mismatch: 8, identity: 0.758

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
caggccggtgctctaccaactgagctatgacgg	Protospacer
 *** *** ******************..   *

40. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to JN204348 (Mycobacterium phage Sebata, complete genome) position: , mismatch: 8, identity: 0.758

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
caggccggtgctctaccaactgagctatgacgg	Protospacer
 *** *** ******************..   *

41. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to NC_008207 (Mycobacterium phage Catera, complete genome) position: , mismatch: 8, identity: 0.758

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
caggccggtgctctaccaactgagctatgacgg	Protospacer
 *** *** ******************..   *

42. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to NC_042010 (Streptomyces phage Paradiddles, complete genome) position: , mismatch: 8, identity: 0.758

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
cacaccgaagctctaccaactgagctacatgcc	Protospacer
 * . **.*********************..* 

43. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to KJ019089 (Synechococcus phage ACG-2014j isolate Syn7803US23, complete genome) position: , mismatch: 8, identity: 0.758

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
aaaactgacgctctaccatctgagctacacccg	Protospacer
**.. .*. ********* *********** **

44. spacer 2.13|377303|32|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR matches to KX349320 (Cyanophage S-RIM12 isolate RW_29_1109, complete genome) position: , mismatch: 8, identity: 0.75

cacgggatcaatgcccatcagaacggcatacg-	CRISPR spacer
acagggatcaatgaccagcagaacgg-agacaa	Protospacer
   ********** *** ******** * **. 

45. spacer 2.13|377303|32|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR matches to KX349314 (Cyanophage S-RIM12 isolate RW_07_1112, complete genome) position: , mismatch: 8, identity: 0.75

cacgggatcaatgcccatcagaacggcatacg-	CRISPR spacer
acagggatcaatgaccagcagaacgg-agacaa	Protospacer
   ********** *** ******** * **. 

46. spacer 2.13|377303|32|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR matches to KX349316 (Cyanophage S-RIM12 isolate RW_22_0110, complete genome) position: , mismatch: 8, identity: 0.75

cacgggatcaatgcccatcagaacggcatacg-	CRISPR spacer
acagggatcaatgaccagcagaacgg-agacaa	Protospacer
   ********** *** ******** * **. 

47. spacer 2.13|377303|32|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR matches to KX349312 (Cyanophage S-RIM12 isolate RW_04_0709, complete genome) position: , mismatch: 8, identity: 0.75

cacgggatcaatgcccatcagaacggcatacg-	CRISPR spacer
acagggatcaatgaccagcagaacgg-agacaa	Protospacer
   ********** *** ******** * **. 

48. spacer 2.13|377303|32|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR matches to KX349315 (Cyanophage S-RIM12 isolate RW_14_0101, complete genome) position: , mismatch: 8, identity: 0.75

cacgggatcaatgcccatcagaacggcatacg-	CRISPR spacer
acagggatcaatgaccagcagaacgg-agacaa	Protospacer
   ********** *** ******** * **. 

49. spacer 2.13|377303|32|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR matches to KX349317 (Cyanophage S-RIM12 isolate RW_25_0210, complete genome) position: , mismatch: 8, identity: 0.75

cacgggatcaatgcccatcagaacggcatacg-	CRISPR spacer
acagggatcaatgaccagcagaacgg-agacaa	Protospacer
   ********** *** ******** * **. 

50. spacer 2.13|377303|32|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR matches to NC_015285 (Prochlorococcus phage Syn33, complete genome) position: , mismatch: 8, identity: 0.75

cacgggatcaatgcccatcagaacggcatacg-	CRISPR spacer
acagggatcaatgaccagcagaacgg-agacaa	Protospacer
   ********** *** ******** * **. 

51. spacer 2.13|377303|32|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR matches to KX349309 (Cyanophage S-RIM12 isolate Np_22_1112, complete genome) position: , mismatch: 8, identity: 0.75

cacgggatcaatgcccatcagaacggcatacg-	CRISPR spacer
acagggatcaatgaccagcagaacgg-agacaa	Protospacer
   ********** *** ******** * **. 

52. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to NC_048046 (Caulobacter phage CcrPW, complete genome) position: , mismatch: 9, identity: 0.727

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
ggccctggcgctctaccacctgagctacacacc	Protospacer
..   .** ********* ************* 

53. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to JX100810 (Caulobacter phage CcrColossus, complete genome) position: , mismatch: 9, identity: 0.727

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
ggccctggcgctctaccacctgagctacacacc	Protospacer
..   .** ********* ************* 

54. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to MN241318 (Enterococcus phage PEf771, complete genome) position: , mismatch: 9, identity: 0.727

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
ttatacgttgctctaccaactgagctacaggag	Protospacer
  . ***  ******************** . *

55. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to MN027503 (Enterococcus phage vB_OCPT_Ben, complete genome) position: , mismatch: 9, identity: 0.727

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
ttatacgttgctctaccaactgagctacaggag	Protospacer
  . ***  ******************** . *

56. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to CAJDKA010000002 (Enterococcus phage 163 genome assembly, contig: phage163-genome, whole genome shotgun sequence) position: , mismatch: 9, identity: 0.727

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
ttatacgttgctctaccaactgagctacaggag	Protospacer
  . ***  ******************** . *

57. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to MT856905 (Enterococcus phage vB_EfaM_A2, complete genome) position: , mismatch: 9, identity: 0.727

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
ttatacgttgctctaccaactgagctacagggg	Protospacer
  . ***  ******************** . *

58. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to MW004544 (Enterococcus phage EFGrKN, complete genome) position: , mismatch: 9, identity: 0.727

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
ttatacgttgctctaccaactgagctacaggag	Protospacer
  . ***  ******************** . *

59. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to MH791397 (UNVERIFIED: Enterococcus phage EfsSzw-1, complete genome) position: , mismatch: 9, identity: 0.727

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
ttatacgttgctctaccaactgagctacaggag	Protospacer
  . ***  ******************** . *

60. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to MT909815 (Enterococcus phage iF6, complete genome) position: , mismatch: 9, identity: 0.727

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
ttatacgttgctctaccaactgagctacaggag	Protospacer
  . ***  ******************** . *

61. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to MH880817 (Enterococcus phage EfV12-phi1, complete genome) position: , mismatch: 9, identity: 0.727

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
ttatacgttgctctaccaactgagctacagggg	Protospacer
  . ***  ******************** . *

62. spacer 2.3|376693|33|NZ_CP015622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134452 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 10, complete sequence) position: , mismatch: 9, identity: 0.727

aaggacggagctctaccaactgagctacacacg	CRISPR spacer
caatctggtgctctaccaactgaactacaccca	Protospacer
 *.  .** **************.****** *.

63. spacer 2.14|377363|34|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010408 (Streptomyces vietnamensis strain GIMV4.0001 plasmid pSVL1, complete sequence) position: , mismatch: 9, identity: 0.735

gacgcgggacttgcgggcgctccaggagctgctt	CRISPR spacer
cacgcgggcgttgcgggcgctccagcggcggtcc	Protospacer
 *******  *************** .** *...

64. spacer 2.13|377303|32|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014276 (Martelella sp. AD-3 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cacgggatcaatgcccatcagaacggcatacg	CRISPR spacer
tttcggatcaatgcccatcagcgcggcgatct	Protospacer
. . ***************** .****.  * 

65. spacer 2.14|377363|34|NZ_CP015622|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011808 (Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-1, complete sequence) position: , mismatch: 10, identity: 0.706

gacgcgggacttgcgggcgctccaggagctgctt	CRISPR spacer
cgcgcaggagttgcgggcgctccaggacgtcgaa	Protospacer
 .***.*** *****************  *    

2. NZ_CP015623

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015623_1

• CRISPR_ID: NZ_CP015623_1
• CRISPR_location: 16696-16784
• CRISPR_type: Orphan
• Repeat_type: I-E,II-B
• Spacer_info: 1 spacers
• Cas_protein_info: DEDDh

Consensus repeat of NZ_CP015623_1

Consensus_repeat	Method
TAAAAATCCCCACGTGTGTGGGGAAGAT	CRISPRCasFinder

spacers of NZ_CP015623_1

>1.1|16724|33|NZ_CP015623|CRISPRCasFinder
CCACTTTTCATAGCGCGGCGAACCCGGTCTAGC

CRISPR arrays and Neighbor proteins around NZ_CP015623_1

CRISPR arrays

The CRISPR arrays of NZ_CP015623_1

>merge|NZ_CP015623|1|16696-16784|CRISPRCasFinder
TAAAAATCCCCACGTGTGTGGGGAAGATCCACTTTTCATAGCGCGGCGAACCCGGTCTAGCTAAAAATCCCCACGTGTGTGGGGAAGAT

>NZ_CP015623|1|1|16696-16784|CRISPRCasFinder
TAAAAATCCCCACGTGTGTGGGGAAGAT	CCACTTTTCATAGCGCGGCGAACCCGGTCTAGC
TAAAAATCCCCACGTGTGTGGGGAAGAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015623.1|WP_066570128.1|17316_18003_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015623.1|WP_157776034.1|12533_13277_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP015623.1|WP_066570124.1|16896_17211_-|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|238042
NZ_CP015623.1|WP_066570086.1|8767_9487_-|DUF2786-domain-containing-protein	unknown	unknown	gnl|CDD|378525
NZ_CP015623.1|WP_157776035.1|14309_15803_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP015623.1|WP_066570151.1|27748_28669_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015623.1|WP_066570137.1|21751_21976_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP015623.1|WP_066570108.1|11256_12303_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015623.1|WP_066570139.1|21972_22179_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP015623.1|WP_066570149.1|25084_27733_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015623.1|WP_066570098.1|10885_11260_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015623.1|WP_066570115.1|13269_14136_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015623.1|WP_066570131.1|18223_18901_+|single-stranded-DNA-binding-protein	unknown	unknown	gnl|CDD|236092
NZ_CP015623.1|WP_066570143.1|22750_23548_+|metal-dependent-hydrolase	unknown	unknown	gnl|CDD|377294
NZ_CP015623.1|WP_066570085.1|7172_8471_-|hypothetical-protein	unknown	unknown	gnl|CDD|236089
NZ_CP015623.1|WP_066570092.1|10205_10796_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015623.1|WP_066570146.1|23739_25020_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015623.1|WP_066570121.1|15897_16593_+|hypothetical-protein	DEDDh	cd06127_DEDDh_CAS-I	gnl|CDD|181176
NZ_CP015623.1|WP_066570089.1|9668_10178_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015623.1|WP_066570134.1|19043_21572_+|hypothetical-protein	unknown	unknown	gnl|CDD|224588

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP015623.1|WP_066570121.1|15897_16593_+|hypothetical-protein	DEDDh	cd06127_DEDDh_CAS-I	2e-29	97.5	0.6

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP015623.1|WP_066570124.1|16896_17211_-|helix-turn-helix-transcriptional-regulator	gnl|CDD|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	3.01544e-06
NZ_CP015623.1|WP_066570134.1|19043_21572_+|hypothetical-protein	gnl|CDD|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	2.02843e-26
NZ_CP015623.1|WP_066570131.1|18223_18901_+|single-stranded-DNA-binding-protein	gnl|CDD|236092	PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional.	3.19397e-93
NZ_CP015623.1|WP_066570085.1|7172_8471_-|hypothetical-protein	gnl|CDD|236089	PRK07761, PRK07761, DNA polymerase III subunit beta; Validated.	4.77724e-36
NZ_CP015623.1|WP_066570086.1|8767_9487_-|DUF2786-domain-containing-protein	gnl|CDD|378525	pfam10979, DUF2786, Protein of unknown function (DUF2786). This family of proteins has no known function.	9.8753e-07
NZ_CP015623.1|WP_066570121.1|15897_16593_+|hypothetical-protein	gnl|CDD|181176	PRK07942, PRK07942, DNA polymerase III subunit epsilon; Provisional.	7.29146e-79
NZ_CP015623.1|WP_066570143.1|22750_23548_+|metal-dependent-hydrolase	gnl|CDD|377294	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase. YdjM is a family of putative LexA-binding proteins. Members are predicted to be membrane-bound metal-dependent hydrolases that may be acting as phospholipases. It is a member of the SOS network, that rescues cells from UV and other DNA-damage. Expression of YdjM is regulated by LexA.	1.12374e-08

Protein sequences

>NZ_CP015623.1|WP_066570121.1|15897_16593_+|hypothetical-protein
MDFTSLQFCAFDLETTGINVNEDRIVTANITHIDPITGHVDSTNWLANPGIDISPQATEVHGISNEHARQHGRPHDDVVQEVATNLTTAWNDGKAIIVYNAPFDLSMMTALTQQQFQVGGLVIDPLTLDRALSFRRGSRKLVDVAKHYELPVDEGNAHAADYDALLAARIAWRVLRRFKRQLPSTIEDLMLYQSNAYRRQHESLKKYMESKGTQISGDAGWPVQHSVTTGN
>NZ_CP015623.1|WP_157776035.1|14309_15803_+|hypothetical-protein
MFQRQNHNTSFVAYSAQPSKKPQTVVVDGKELATRIHPDVFINEYTSVKIKSVTDNGETANIVFDASTVVTSSDKKMKYDFGANIQSNTDLHKLATEAYNQGTPVYVALETRRRYKTKNGEIVPLTTPIHKLRGCKDGPQSAANSSTTGENCSKIIAAMGWAEQPNHTLFSTETQSDPNIWPLVRGNQDGDLAPEGFTIPFLPNGAALPDGTPLPNGTRAGGIIATPRTQTTGDNTELLKELAQLKKMVAHLQTSSSSAGGAKPWCERLGNGQINPGSYEITQIRHTRETATHIITTALATTDTTLPGEQLRSLESSLTRVLLWLADGVQAHVAGSVDRMGKSYTEAGAWVKHVIRCEDPYLASMIGDDDEAKTQANAWAKRVRTAASERYAEAVELAAEHAEQTTGIKSHTPADTNQNVTMFSDDVEARKLWDELIVTIGMEKHVSNLNPALTTQFGSHLSTQIPADHMRAALSEWLANPQQFLAWAENEWAKSHA
>NZ_CP015623.1|WP_066570115.1|13269_14136_-|hypothetical-protein
MNVETLIKAGTHQWCPRCKNAIILTASECCASCKNTPTNISVPKPASTVAAPTASGKRFLTPNPTSQTFIRPEALGELSRFEDCSLWIVAAGKPETQGSMKAVGGVVKHSNGKKLHAWRDTLTKEALRTVAGKWTALNIPVCLDVVLTVPAPAKLPPWNPLETEDSTPPRVPPMVPPDVDKLLRAVQDALSPRDNKKPGEIEKLRDRRFKLLVDDSRIIDSSARKTYPRPRHTHDWALDYPGAVLRISPVGHGVPALPASTLLEPAQLPPQVAELAKQLETRASHQLI
>NZ_CP015623.1|WP_157776034.1|12533_13277_+|hypothetical-protein
MTTPVKVGVGVVSAVAAVGGFVAVAVNSLTTELDTLAYRDSLITVGGGDLPAPPFIGWSQEFVESPPERLQTSGTITNVSNPECEPGGERQAELYGLVMENASRWSATELFNAAYNSQIRVDASDSYIKSNGLDYGVVDRWLDDCGFVSFDQGDKTIRITNKPLDVDMGVWDFSDGRAWVQTVATTTAQGFQGASSTITTLGNAPGVTLQAQLTFRGRADDNAVATMDLLWSSQAMKALQTQKDSAK
>NZ_CP015623.1|WP_066570108.1|11256_12303_-|hypothetical-protein
MAHNLVLGIDLGTATIATALAETGEQPTPLPIINNQPHYPATLLVDTNGEIKRPDYTGDTTQHVTNLTTHLGQPPQIIANTPWGANALIEMAIRPAIDAATDEAGQRPTHIAAVVPTHWPDYITTAYTKALETTGLPVTTIGADEATAHAATLNSTTTGAVTCIDFGENKATLTMALPKENTHIPDIHRADPNGGRRHLDTELTTRIATHLDPTFTPTPQWETQAHTVGQQLRTKAHATTHPEDLIEITLPAPFSTINISAGQVSDLVEDLAALTLKRLTANPDITHIWNVDEDDNTPRSLLITGGFSTDKAVGTAIRTTIGAWRAHPNPQAIIATAAADLVESTLNA
>NZ_CP015623.1|WP_066570098.1|10885_11260_-|hypothetical-protein
MTTPTPQQILGAARLVDVSVKTMPLPRAIAAAQRHYNQRGDNKTATNESDQHFLERITVNYLRHVCSHYDDHRDFLRTITDKTTRNAAGAIIKGRQLAEIAHHYPALAEEAKRQATWEDNKPHR
>NZ_CP015623.1|WP_066570092.1|10205_10796_-|hypothetical-protein
MAIPGIIENNHNWITVTDPDTIPQPPRGVLTWIRKTSYPDPHTIKRTSFLHPEVTDIADTTVANIKTIATSRTVSESYLGDPTTTVRALVATLYRQLDAMLTVDSALIEHDDIVSTHHDLDSASTLINQMTQVVDENFHHNVEQPASRIQELADQIKLLDLHIQMPQMVADLHTNPTVALETVTHQISALCDLPLN
>NZ_CP015623.1|WP_066570089.1|9668_10178_-|hypothetical-protein
MADNTNKNTLTLIGLGGIFTLAFLGPVAFAVLNDDEDTPTQNTTTATQPAETLTAAKPTTTLQKPDECTTPTQQHINDLLDTLKQPGGTAELSASWIDSDTHTEATALMVRSAAGTIDQPHLVWVNVNDEWQAATAGTQQATNSPPADAETRAGSAVSGAITCLTAGSR
>NZ_CP015623.1|WP_066570086.1|8767_9487_-|DUF2786-domain-containing-protein
MSQKSAIERKIRGLLAKAADQEGTPEGDAFQAKAFELMAHYGVEESQVNGDESSQLIAESISLGGAHTPMQFRLLSSISEALSCTIVGTGNGRKITKVTIFGRRRHVERVMMLFTILNPQMATGATKAAKTANNPWGETTAVLKRSWMRGFIYSIGQRLKNIEKTVVEEATAQGTGTEISLVDDLRAAEEMAEKEHPDRKTLTTRARYDAELVQKGSDSAENTDIGQTRINKQPVALTA
>NZ_CP015623.1|WP_066570085.1|7172_8471_-|hypothetical-protein
MTTTITKTVEATTTVEHLLPAVENLAKICTKQRKNMRIRTNPNSTLTLSVDNWEVTAEVTLPATNTTPGEFTVDAPRTNTMLKKAVGKRNKTTNALPVTFVATDSNVAMTISDITLNLDQETPLEDHGFNLPESSPIGAFPAATIREVWPQVASSCSTDDSLPMLTGVDMKLVGNKCEFRSTDRFRLSTTTVDYTPHVDPQMLENKSILIRGNSLKLLVGQLKTVEGEVTVKFVGNTKPCEGILSFEFENTVFTAKLLDADFPNIDPLLAKQAETVCVFNRNELVTKLKKLSGVAPRFADLRINIVDGEVGLNIFDKTGRMDDNGNSIPLATTTIDTDVAYKTGRNTLFGVNCNYLVDCLNSFDVEDIALTLMNPGRPVLMFDANEYDADGNITVDKKKMIKDATEQLGRLDVCDLPARDHKMILMPIRLPG
>NZ_CP015623.1|WP_066570124.1|16896_17211_-|helix-turn-helix-transcriptional-regulator
MHTTPSLPEETITTWADHCRTLSNAKRLRILLVLHSTPTPTPVTCLAKQAEMSVNHASRALVYLAGKGVVEGKRWGKQMLYSLKDTPVVDFLTYIKEAPPTDVE
>NZ_CP015623.1|WP_066570128.1|17316_18003_-|hypothetical-protein
MTIYTLSANQKYDPHGRSEPITGTLKDIQTHLLEQAGKTNQELGIWTVWELDENDYEDDEEPRTPIELTPGSLKECASDLWDIHPNHITITEQPNSTDLHTIATFIAGKLRLNPTFTLTAAENYLAGLEETDNRTINRNALSDNDITYLTTTITTAQKDGTLGKDAIHQLEKTAHQLEQTQTQLDNLLQQRDNLIVKALGEGASVNDVAEAADRSAAWIRKFRKHVGY
>NZ_CP015623.1|WP_066570131.1|18223_18901_+|single-stranded-DNA-binding-protein
MAIGDTNITVVGNIVADPELRFTPSGAAVANFRIASTPRSFNRQTNQWEDGEALFLTVNVWRQAAENVAESLSKGMRVIVTGRLKQRSYETREGDKRSVFEVEADEVGPSLTFAKADVQRTPRGGNGGGNFGGNQNQNQNQGGFGGNNADQNQNQGGNFGGNQGGFSGNPQQNTGQNTDQNTDQNTGQNSFGGHPAQQAPENDPWNSAPPAGSGGFGGADDEPPF
>NZ_CP015623.1|WP_066570134.1|19043_21572_+|hypothetical-protein
MATKTRRKNPNSMSSQLADSAKKRSGQLFLDWATLTWNKDTTKIGPLPIIAYNWALLVIFPALGYFLPTHRLAVATACALWILTTIGRAAAVQPARRKTLLRIYEQNQRSAALPRITPTNGLSPKKQIQVRRWGKKSQPTDLTLKIGDCPAASSMYARTQVEKALISSLDAPPQGQTWLITWPSPTVVRCHTVDEHGEEASRQKFTRKVHGRTAQVFKINMRDSADYAYACSDWFSTESKTGEMVQTPKKIILTLGSFNYADMFARKMVERGLDDLLKVPGSWIYSWGEGDLEMTQVERKSVEARRKNTTRKINDDIGGLVQGRGDMPIVDVKKWSDFEDHSDYPEEIIINFGTRNLSERRLRDNMENSLDTSMEAMYQGSTWLYDWIPSGASTVLHAKAVAKDSLQSSRKYATKRLRNVVEAKFGSSRNFVDCDIVEWQEELAKTGESLPKEATVNFGDVDVTKQETQDSFEMHWDSLTTACDWHYRWNPAEGFVTMTAVPPLPPYAFFPKPGTPEFDKWNADARDGKINFGLRKGGGHLIWDFNKTPHGLIGGKTGMGKSVSLNIIAFAAMYNPDLLELVVCDPKRTDFTWTPEFPNVIKFAALDPEIVAAVAMAKNEMERRQSLLARVGVRNIGELRRKLAENPELVAEFGAPPRRLVLFFDELADFLAKGADKDNEELKDEARSDLEKIARLGRAMEVNIVAAAQKPDSKIVSTQLRSQLGFRLAVGPTDRHESEMILNSDHGTRHPASGVPKGRAWGYDPLGGYQLCQVFFLADNSGHLDWKPDEYMLGFKDMVRDRLKHLGYASHTITNSDGGSEGRWAKVEGVGVDPNAPTIAMT
>NZ_CP015623.1|WP_066570137.1|21751_21976_+|hypothetical-protein
MKIVSGAVTALLFIGVVIGVWRWLGDDQPLLSPEWFESSTQKFEDLGEVGNQLVEKLPDPESVSPSLPELGDDQ
>NZ_CP015623.1|WP_066570139.1|21972_22179_+|hypothetical-protein
MSFGKVISGILVTLVVVGVLKGLGDVESFTGDNIGDILLSIINGISDLTIKLVPTIIDTASKLLDQIL
>NZ_CP015623.1|WP_066570143.1|22750_23548_+|metal-dependent-hydrolase
MVMGPTHAMSGAAVGLAVAQALPASWGGVATAQEAFVYAGIAAGAALLPDLDSPQATVSRSFGPLSLGLSHVTENAAQALVNLTRGAKDEYCGNGHRTATHTIWFGFLAGAAASALIAAFGKNAAIGLLFLFLGLAIRGLVPSWSKKNDWLVVTGVAAAISVVAWTVVPHTASALVMGSAVTVGVLTHLAGDFITKNGIPALAPFVPVSGRRWWDFGLPAPLRISASGMADKVLLTVFTALVVLQVFLVGSGMSGVDAGHVVAGL
>NZ_CP015623.1|WP_066570146.1|23739_25020_-|hypothetical-protein
MTTMTAEDAMKMALGDTVTEPDQPASTPDSVPDSAPASTKNAAVDSHQGPLTAEQAEKLINKAIRAAMTFADAMRQIVSKRAWEALGYSDPRHMMRERFTGKLINPSTGEPYSDSYIRRMSNMAWVLWSLTEYTGLDVDELQISARDLEKIPFGVGGKTHEELVDTVLEEIEKRGAGSAEDVQKAIDATLEASAAAGEPTPPEPDDDFVPSGLLPSEPILGDSPSTAESTQRGRGISEAVGESEGDWQGQAESRPRSAAESFDEDFSKGSQAPKNTTGMAEALEMMRTADRTTDSVKKLSGFPADLSEAVQGVQKALPEMVNVLKTVLDAGMAALSVGKTDDVEGLFDSLNEKELDDLHEQVEQAVEVAPTVQALAKILGEVAGERQELPGLGPVSVVAELCEEAVEVVERLEDFMDEIDVIIQDF
>NZ_CP015623.1|WP_066570149.1|25084_27733_-|hypothetical-protein
MVCRENKGRSAIMGYVKHLQRELGGEAFNDAEVQSLIHQVKHDGDALDVEAPLTKEEQVDMMRRLRSQIIENPSISEEEKYRKSTQRPGIVTRLDEEIARIESGKTAKGDPLTASQLNTASHMYAMQRLGNTLERINPAKQEFLETNARHRGISYEEAQAEWSQLMSQKGHFESRSLIRDDVRESLATAGIDSHVQANLGASGRAINAMEVMEARRMEMVKNSESKPAVTKEHSLATFVAPGSKESQLRCRKCGQFGHEDSSCPNIKQVERLEDIRAERHLISRAEEIAHDRHFIDTASDDVIRELYGVDDVDQERADTRRTLDAMANELSAEANGTGAKYLDEKYRKRAQVRIEREEKRAEKEISNNAAIVSKDVSDVQYNEDSGVIVIHRTPDEDGQPREPIIRRCHPDEAADFSERLRTEPLDKVLATSMNTDGHQFANRGDAQAALTMNRCPTCGQWASMTSGHKCPVPGGPSEELEHDRRRARIEQQQKRRKRQADGGEPVASFERDVDFRGHQGQRKRNLRYALDGEQGAITVNNYRFGKPKEVLSSVDEGKVALPAVSASFEDGQVSGRVSVWANDDGERMLSAYDTGLAEAGLKCDCADYAKNYRCKHIQATRVMVQQAYGEAGTPTRALPDGVVPGDRIVRGANADQTAQDGLEINEERIGMNRLQSMKRSRRWEEMQNFVSNRAAGQGTTTLMVEGPRSNDGEAMDWPDTWAPQPTTDDGTQRREQSLGKVTDLTNRGAVADRFRTLMSNRYVEMPDGSRERIKYAANMSSNPGGITINLPRSFQRTTPARRRAAQKGLADMLGVPQSTVTEKGLFIPDNTASYAEYLDRASQNVNTRRINGPQTVSLPTAESYEASRKNSLRGWRGVTANV
>NZ_CP015623.1|WP_066570151.1|27748_28669_-|hypothetical-protein
MSEFRIATLDDYKTLHPDHDYIPPLVTDDGHVSAIGTAHGRTIPVIGSTRPPIFDVSLNPLDGSQVRIYADEADDVLAVLLGTEYQSQLARCKQIEANYMELSDSDQMGSAGHTMREEFDSEVTLLGMIRGTFAHTARARAQQLVNDKAKASGAWEALTDQERTILEQAADMTSETAPVGIVKEMTIPDPTHPGHTLTGRVGEWGADVDLILNEVDYYPWCEVPPVFSQVTITDTQGNSYVDDSSKLNLRIIRVDSAEELLEDLGELGVISMTVRPAVPVDAIFRPNYAETVQARIDANLSAAADN

Crispr_ID: NZ_CP015623_2

• CRISPR_ID: NZ_CP015623_2
• CRISPR_location: 40284-40415
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP015623_2

Consensus_repeat	Method
CCAGCGCGCACGACCACCACTGTGGCCACCCCAGCGCCA	CRISPRCasFinder

spacers of NZ_CP015623_2

>2.1|40323|54|NZ_CP015623|CRISPRCasFinder
GCGCCGGTCTACCAAGCCCCCACCCCCACCTACCAGCAGCCGGTCTACCAGCCA

CRISPR arrays and Neighbor proteins around NZ_CP015623_2

CRISPR arrays

The CRISPR arrays of NZ_CP015623_2

>merge|NZ_CP015623|2|40284-40415|CRISPRCasFinder
CCAGCGCGCACGACCACCACTGTGGCCACCCCAGCGCCAGCGCCGGTCTACCAAGCCCCCACCCCCACCTACCAGCAGCCGGTCTACCAGCCACCAGCACGCACGACCACCACTGTGGCCACCCCAGCGCCA

>NZ_CP015623|2|2|40284-40415|CRISPRCasFinder
CCAGCGCGCACGACCACCACTGTGGCCACCCCAGCGCCA	GCGCCGGTCTACCAAGCCCCCACCCCCACCTACCAGCAGCCGGTCTACCAGCCA
CCAGCACGCACGACCACCACTGTGGCCACCCCAGCGCCA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015623.1|WP_066570164.1|28731_30474_-|hypothetical-protein	unknown	unknown	gnl|CDD|214621
NZ_CP015623.1|WP_066570174.1|36248_37202_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP015623.1|WP_066570169.1|32048_34427_-|SMC-family-ATPase	unknown	unknown	gnl|CDD|223496
NZ_CP015623.1|WP_066570179.1|37659_39855_-|DUF87-domain-containing-protein	unknown	unknown	gnl|CDD|376671
NZ_CP015623.1|WP_066570184.1|41217_42399_+|hypothetical-protein	unknown	unknown	gnl|CDD|224496
NZ_CP015623.1|WP_066570167.1|30591_31878_+|AAA-family-ATPase	unknown	unknown	gnl|CDD|223786
NZ_CP015623.1|WP_066570149.1|25084_27733_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015623.1|WP_066570205.1|47815_48313_-|ImmA/IrrE-family-metallo-endopeptidase	unknown	unknown	gnl|CDD|225412
NZ_CP015623.1|WP_066570151.1|27748_28669_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015623.1|WP_066570201.1|46183_46747_-|phosphoesterase	unknown	unknown	gnl|CDD|239477
NZ_CP015623.1|WP_157776036.1|34537_35866_-|hypothetical-protein	unknown	unknown	gnl|CDD|223497
NZ_CP015623.1|WP_066570198.1|45785_46187_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP015623.1|WP_066570195.1|45197_45671_+|XRE-family-transcriptional-regulator	unknown	unknown	gnl|CDD|238045
NZ_CP015623.1|WP_066570207.1|50368_53137_+|cutinase-family-protein	unknown	unknown	gnl|CDD|366455
NZ_CP015623.1|WP_066570206.1|48675_50163_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP015623.1|WP_157776037.1|37255_37579_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015623.1|WP_066570190.1|43960_44926_-|hypothetical-protein	unknown	unknown	gnl|CDD|309782
NZ_CP015623.1|WP_066570146.1|23739_25020_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015623.1|WP_066570187.1|42395_43457_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015623.1|WP_066570203.1|46721_47798_-|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP015623.1|WP_157776036.1|34537_35866_-|hypothetical-protein	gnl|CDD|223497	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair].	9.95624e-09
NZ_CP015623.1|WP_066570164.1|28731_30474_-|hypothetical-protein	gnl|CDD|214621	smart00327, VWA, von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.	0.0022972
NZ_CP015623.1|WP_066570169.1|32048_34427_-|SMC-family-ATPase	gnl|CDD|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	1.36978e-32
NZ_CP015623.1|WP_066570179.1|37659_39855_-|DUF87-domain-containing-protein	gnl|CDD|376671	pfam01935, DUF87, Domain of unknown function DUF87. The function of this prokaryotic domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.	6.05926e-11
NZ_CP015623.1|WP_066570184.1|41217_42399_+|hypothetical-protein	gnl|CDD|224496	COG1580, FliL, Flagellar basal body-associated protein [Cell motility and secretion].	0.00192842
NZ_CP015623.1|WP_066570167.1|30591_31878_+|AAA-family-ATPase	gnl|CDD|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	5.20194e-16
NZ_CP015623.1|WP_066570207.1|50368_53137_+|cutinase-family-protein	gnl|CDD|366455	pfam01083, Cutinase, Cutinase.	0.000415455
NZ_CP015623.1|WP_066570190.1|43960_44926_-|hypothetical-protein	gnl|CDD|309782	pfam04796, RepA_C, Plasmid encoded RepA protein. Family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood.	1.12637e-19
NZ_CP015623.1|WP_066570205.1|47815_48313_-|ImmA/IrrE-family-metallo-endopeptidase	gnl|CDD|225412	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism].	0.000682484
NZ_CP015623.1|WP_066570195.1|45197_45671_+|XRE-family-transcriptional-regulator	gnl|CDD|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.80107e-08
NZ_CP015623.1|WP_066570201.1|46183_46747_-|phosphoesterase	gnl|CDD|239477	cd03382, PAP2_dolichyldiphosphatase, PAP2_like proteins, dolichyldiphosphatase subfamily. Dolichyldiphosphatase is a membrane-associated protein located in the endoplasmic reticulum and hydrolyzes dolichyl pyrophosphate, as well as dolichylmonophosphate at a low rate. The enzyme is necessary for maintaining proper levels of dolichol-linked oligosaccharides and protein N-glycosylation, and might play a role in re-utilization of the glycosyl carrier lipid for additional rounds of lipid intermediate biosynthesis after its release during protein N-glycosylation reactions.	0.00883143

Protein sequences

>NZ_CP015623.1|WP_066570179.1|37659_39855_-|DUF87-domain-containing-protein
MNDVENLTVAVIGAPSSCESAVLNLSTAAYHLPLLGKMLAFQVAFEGDSDELALATVTHVETVNPLHSMNSSVVRHIADNGAVAHKSGDAADTRAVTVKVEAVFKKVDGVWTKHSSTLSNSPATGTPVRVLSQAMVNEVLGDSDQDACIGSLRGSGVRIPLTLEDFSGVRGACHMAVVGVSGSGKTATSTAFISSLLRHAGQGHIIFDPQGQWSTEHGTLWSLQGLARSLGRKVTVARLSHSLRLRKDAPLLMNLLEEAGFFKKLAFGSGADDNVAQAKDVLAEALSNKRLLERYGIEDWSSTRPDVLLRFLLNELHEQLPAGMIYASREPQRRVASTIYRPTEDSDGHPLEDHLLDRIAFGALDDGGERKFATLMAIFAPLSSLWSPWSPTGMAKILAGVDGSDLVDEDLRRDAWGLMMEVMSPPAGHPAPMLILDLSADLSSIKLDGDDSGEDDVDAADAIRILDSVDVKARVMAQLSRTMLLVGQREFSRGTPLNVLTTVDEAWAYAPQPDARVHSQAVISLSNLLAGAARDARKLGIGFLFILQAPSGLREDIFKQITVLFVGYGLHEPAELKLLSGRVRDNHLKLYQTTPPPAATGRYVWMVVGGGVTGLSFGSNPVFLEVFNTGEQWLEANQGWVTAARRQAAGKLPQGDFGGPLTTMPLKPVLGGVEGRQARRAAVVDAGANKAAVTVVAAQSKPTRRPVVKPVSTSVVKPVIDNSIWPDDPPF
>NZ_CP015623.1|WP_157776037.1|37255_37579_-|hypothetical-protein
MAIHMTVLALDEDEKTTLREVYDTKRFTALMKPVGDNLRSGLSELKRLATPETIEKDAAQRGRDLAVSLLEELNTVPDSEAKTVQVEALKNVKDIFKDILEMDNAHN
>NZ_CP015623.1|WP_066570174.1|36248_37202_+|hypothetical-protein
MNRNIAKPCERNRSAFDADFLDPSDFRQAKKRGQSTERHAALLQDAVEDTVKAIQACQSCPILALCRNELKKSIAEGAAPAGVVQCGIFWGYDHKPDFTLNGCVNNKSAEAAKKRSGDLDQVAYRIDDNGQRWPMTVPVYVERGRNARACTKTKGGPIKIDLGTWDLAWIPPIPESINRAAVALAVEKIQSGENIIITRAKLQRTDVDADGREVLSDADVCEVMRELHTKGTSVRLIATRLGLSHATTKKVLLRLGIPVENSKIHQEAAQRREERRRQVREQFIREMEQAKLKRYRMWDDTEAGEQIPLIMDSIHMC
>NZ_CP015623.1|WP_157776036.1|34537_35866_-|hypothetical-protein
MYKIGFFGCQHLGYAMKGMNRRHSTGQNLREVDGFIAHTHIMKDALEHNINGIVDGGDLFHVEHPSVRAVNTALHVDDLRVAANDNTIWRITNGGNHDNGAGSKLSAVSHVHRTWLNSQAVYPDPTKPEAEQVGPWPGFYEVHQPDPTLPLYIHVVSHNGLDPQLAERGITIDPQPLDGGVNILVSHGIFSADGRLFGADDSHGATRVIPEDWANRGWDQIMLSDYHTLGPIPGFGPEDGRQRGQVWMTGSAVRRGFSDEACGRGWLELTLQDNGETTITPHYVWQRPQVDFPLIDARTMTSEEIDVKIRERLRNQDMWDQESETITGDGGFLLRQVISHTTPQQRRDLASCRATWAKTAEDAAFWSADYVKPLTETVAEKPHDDVEEKAPNLSLAERFLQHTNHGKVGAVLKQLNEHDQEAHKQVIDRVHKTLTTVTVDTP
>NZ_CP015623.1|WP_066570169.1|32048_34427_-|SMC-family-ATPase
MRVQKIHLFNFRSVEDLTLDLTNDGLHALIGSFGSGKSSFLTGLRFALFGDNGEAGANLDLRRRGCPEGEDAGCEVTFTHENTTYVARRWLRRSVTKARGVAEKAQASLTINGTPVDGITARTLTQEMEEILGMNAKAFTSASLIPQGEVATLMKASPAEVQALIEEHTGLDVLTKQRDLARKRANDAESTAKALPGDAEDLYEKENQLKDASEETEEAQAALKNAQDYFTATNNAAKNAHNHASELRAQERKATDHKTLVTQLTERANSAKQAVEALTQEAAEAGVDLHNSAEEERANKLAHIDQQLDHISTAGRRLKEAVDNTATANKLAAEARTALEAAGVKTRELDAQEQLLTEREQRVNSEAHNAAEIIEASLSAHATEKAELERLNKALNSLYGHNGNGHQCPTCFQEVSNFQALVGDIEASRDGAQRRMDKAVESGRAARTVEKESKQALVAINEARGEFERHRQSVNQLQRDVERLNTAADQAVLVENQHRNALASLVGYQDGGDEDLFAQGRELHVSLKNQRDMLVAASGLQQRYIRANHDATLAQEKLVETQSLVVDAPSAQEIAEAENTAQLLRTDADQASQEFNEATSVHAQAKSAQSIMQSLVEQARFDWSNKVAAQSNALVTRGEADVLSALRSDLLNEFTRSICRSASDLLAGFGGEYVAFRMDDDFVPRAELGDGTLVRTAILSGGEAAMVGLAFRIGITLHITGGGMPEQILGDEITNYLDEEGRRAVLAALNSIFPSVLLISHTAEVEDYASQVHRVERAELQATRWVDDLVNA
>NZ_CP015623.1|WP_066570167.1|30591_31878_+|AAA-family-ATPase
MLAFGFVYSTSRDVFSDEAPDSAVVLTEDGALLQGDSNAVSVIDPVIRGETSSQRLTHLMEKLFSICLTISETNIAGSSLATAVVDLPQETGNDDFLDDAPEATNLRIVHQFLQRMNAGEGREVTGPDFISLLDLESELDIDDTTYTTPEPTVADEPPTASLSDTYKPRTIDSTRDIDVLRNARTHHMTVLLSGAPGTGKTALCEASFGDDLVTISCNEGMVLSDLVGQWMPVAHAPGEFIWQDGPLVTAMLEGRPLLLDDASWLSLEVQANLLPVLDTRRSITVVDRRDGSHIKAADGFMVVLTQNPDIGLGIIEPIRNRVTFEVHVPADLSTARSLKVDGDFLAIAYRLEEQDRELRQQGGQGWVPPIRTLLEVTQLRAVFGVSFAASQFVAACPVQQQDFRQQVQQMVKDQMGAARVSDGLVSMG
>NZ_CP015623.1|WP_066570164.1|28731_30474_-|hypothetical-protein
MFKKNHPTWFLMTPALSRWINANFNTGIGKIALSTLEVEKVEMRENNTRLLIPRGVITDMTFPAPIGQVGEVRYQLQQPVLFGAITMACAPLVQSPWRAEITSTETVNDDDYRAALTLDQLRVEVGECRARGFSKILIHAAHSHFYDGFTAHKKVTSSVKSMVEHLVLDFYARAAHGVFSGGDCAEITTIVEKALEPVIGQPLVDTLTSIVDDVVAAHGHNPAEMLSHGHRWVEAINTITVDDEAPVMKQFDLRCWRLNQIITRSAKKNVALLKVKYPPAVVRRQPKKNPGGLQEWLHTLTENNAETPEPSKTGHDDDDDNDVFVPSLGLPAHRHLHYRQPTQKEKRSAVAVSRDLQKLRYRKPGTTTTASQIPHGRLNTRQLVQFTAQRTAGSLVTATPWSEKATLQSEQPGLSCALVLDASWSMATFIRNLVSLNWVMAQATRTVGGTLSSWGFGGNAFEIVRAGTTPRLVPEVVDTGSNSLGAAEALAHAALDANLEAGSGARIAIVVTDAGENVEKEALNTTFGLLRESGVATFLVLTGAARQDHGITNADIIDCSWSEDLTPMLTEKIMETYASI
>NZ_CP015623.1|WP_066570151.1|27748_28669_-|hypothetical-protein
MSEFRIATLDDYKTLHPDHDYIPPLVTDDGHVSAIGTAHGRTIPVIGSTRPPIFDVSLNPLDGSQVRIYADEADDVLAVLLGTEYQSQLARCKQIEANYMELSDSDQMGSAGHTMREEFDSEVTLLGMIRGTFAHTARARAQQLVNDKAKASGAWEALTDQERTILEQAADMTSETAPVGIVKEMTIPDPTHPGHTLTGRVGEWGADVDLILNEVDYYPWCEVPPVFSQVTITDTQGNSYVDDSSKLNLRIIRVDSAEELLEDLGELGVISMTVRPAVPVDAIFRPNYAETVQARIDANLSAAADN
>NZ_CP015623.1|WP_066570149.1|25084_27733_-|hypothetical-protein
MVCRENKGRSAIMGYVKHLQRELGGEAFNDAEVQSLIHQVKHDGDALDVEAPLTKEEQVDMMRRLRSQIIENPSISEEEKYRKSTQRPGIVTRLDEEIARIESGKTAKGDPLTASQLNTASHMYAMQRLGNTLERINPAKQEFLETNARHRGISYEEAQAEWSQLMSQKGHFESRSLIRDDVRESLATAGIDSHVQANLGASGRAINAMEVMEARRMEMVKNSESKPAVTKEHSLATFVAPGSKESQLRCRKCGQFGHEDSSCPNIKQVERLEDIRAERHLISRAEEIAHDRHFIDTASDDVIRELYGVDDVDQERADTRRTLDAMANELSAEANGTGAKYLDEKYRKRAQVRIEREEKRAEKEISNNAAIVSKDVSDVQYNEDSGVIVIHRTPDEDGQPREPIIRRCHPDEAADFSERLRTEPLDKVLATSMNTDGHQFANRGDAQAALTMNRCPTCGQWASMTSGHKCPVPGGPSEELEHDRRRARIEQQQKRRKRQADGGEPVASFERDVDFRGHQGQRKRNLRYALDGEQGAITVNNYRFGKPKEVLSSVDEGKVALPAVSASFEDGQVSGRVSVWANDDGERMLSAYDTGLAEAGLKCDCADYAKNYRCKHIQATRVMVQQAYGEAGTPTRALPDGVVPGDRIVRGANADQTAQDGLEINEERIGMNRLQSMKRSRRWEEMQNFVSNRAAGQGTTTLMVEGPRSNDGEAMDWPDTWAPQPTTDDGTQRREQSLGKVTDLTNRGAVADRFRTLMSNRYVEMPDGSRERIKYAANMSSNPGGITINLPRSFQRTTPARRRAAQKGLADMLGVPQSTVTEKGLFIPDNTASYAEYLDRASQNVNTRRINGPQTVSLPTAESYEASRKNSLRGWRGVTANV
>NZ_CP015623.1|WP_066570146.1|23739_25020_-|hypothetical-protein
MTTMTAEDAMKMALGDTVTEPDQPASTPDSVPDSAPASTKNAAVDSHQGPLTAEQAEKLINKAIRAAMTFADAMRQIVSKRAWEALGYSDPRHMMRERFTGKLINPSTGEPYSDSYIRRMSNMAWVLWSLTEYTGLDVDELQISARDLEKIPFGVGGKTHEELVDTVLEEIEKRGAGSAEDVQKAIDATLEASAAAGEPTPPEPDDDFVPSGLLPSEPILGDSPSTAESTQRGRGISEAVGESEGDWQGQAESRPRSAAESFDEDFSKGSQAPKNTTGMAEALEMMRTADRTTDSVKKLSGFPADLSEAVQGVQKALPEMVNVLKTVLDAGMAALSVGKTDDVEGLFDSLNEKELDDLHEQVEQAVEVAPTVQALAKILGEVAGERQELPGLGPVSVVAELCEEAVEVVERLEDFMDEIDVIIQDF
>NZ_CP015623.1|WP_066570184.1|41217_42399_+|hypothetical-protein
MSQSGYNPFEDDSDSDFAPESPSNESDLFGDDSIFGDGWPVEEPDDFSEVNGTTTTKPTPLERPRTPAPPSTPQPPAPEVPTTPRIIKTEPDADIIDDPLKNVKPTDFGDFTPQTSRFVAPSADAVLTVPSKQSAHTKLDAPADPGEPKRSKKEQRNNDKIARRAAKVEKKKSEKRLTKQEKTTEKPPKKAAPAPKKRSLTKISTAAAVVVLLGVGAGGLYWMNTSLTSPGESTTASAAEPTTSEPVVTSTTAVPEITPQDKLDSTVAATCERAGGTFADGDTSTPEKTIQGFNYSYFTKKDAVSTATYLDDGLFDSVESLQEGIDHPANGDAFCITISPESETVFDVGVTEFVRPDTVDDEVVSWRTDQTVTVEKQGEAWKIVEQSINTSNA
>NZ_CP015623.1|WP_066570187.1|42395_43457_-|hypothetical-protein
MPITDILQDAELFLGSTDPNSQTTAQRTLNATGNLLTYPQPTTTHQLVCIDGAVASHQTDALVWIAAAAATSAEHQAITDAAVTPVGPSAERLRGAVMALTEMKMAVEASRSHEHVWMDGGLVTPLISVATALTDTNEAASTSLVKTLNRSNAHHIIANYVDLAIQGRLKALPKQDTARAFVQHWATSPNVTPELHDWFLSRSDRSCVSLLLDRGQRTPTRIAVEALKVEIKKLSAMSIPAQKWINVLNQHYSRWREEVSAHIAYVMPRNGIGRAIKIELTCTNPHNAENDMDVAASIIDSHIVGPHIIEPLPQHLVDLTAKKAVSSAIIDLMSAVDMKFSTTHPEAANQYRS
>NZ_CP015623.1|WP_066570190.1|43960_44926_-|hypothetical-protein
MPQQHQQIAATTKKKEKELARQHNITVVQELTPEERSAVGYANATLIQGTFPYRKTTDHIHTVKNGNLTITMSSVNGLPYGVYPRLIMCWLVKAAQMNHLDYDKTDPERLRISFGTNLAAFMRDVGIDTRYGKNSTSDRARDQLLRLFSTTLSVQRDYTHDGDNITTGHMTLIGKAWKFRWNSEDPHRFLHDSHVILTEEFFDMLVNNAVPIDMDIVRHIKSSVIALDVFMWLSYRFSYLRRPTIVPLTQLMQQFGTKMDPQDPVARRNFTVKLKKAIAKIHEIWPDAKVSVLDGGKGLMLKPTAPSVRRKNRRKITRNTK
>NZ_CP015623.1|WP_066570195.1|45197_45671_+|XRE-family-transcriptional-regulator
MSKSNVKFSHEKFAQLREQKGLTVADFAEIIDVNYKTVWLWAKGKTIPSLESLTIIAHILECDPGRLMNIEPGKETLSDLRYLKLISAKEVADNLGITVPSYTAIERGQSAISPRRAATLAIILGFDKSRIYTAWDNSRAEYFQKIEEKSRKKKQSK
>NZ_CP015623.1|WP_066570198.1|45785_46187_+|hypothetical-protein
MKLAIQHRLQFLVDYVYPADRGPYTADEIAGFTAKSSFKVSSTDVSNILSGELTAPNGHQLRALAQVFEVPIEFFETTNQQEWDSYVTWIKKVRERLSPAELHAARIDNWFEKRQKRRERRRKSIRQKGDSTS
>NZ_CP015623.1|WP_066570201.1|46183_46747_-|phosphoesterase
MRRAASVVSEIFAPWVINIGFFLVLGAVTKNWVPATASAIGTGVVPMVLILVLMRSKDVGGHHVTSKRQRGPVLVGIVVCVLALIGVLCVLATDPLVWTGVLMALAFVVLFTVMTAVGKIKASIHVGLWLCVTVFLAGEVSPLWLFAVVAVPVIGWSRVALNHHTVGEVSVGALLGLMVSCVTLMAF
>NZ_CP015623.1|WP_066570203.1|46721_47798_-|hypothetical-protein
MFHLSPSDNFTVPLVIAIALALIVLVQLYVAIRRSTLYALSLTAIGLSMAGYAVLMIPPVEEWLTATVGIRAISPLLKDVFLFISLVSVSMVWGKINVPRKVSIPAQTLVFIMPITAYLSWISNRALCAFETTPEFQACAQAQPLGFASQLYTYFLVLTFLIITVIFMWSIIGPHNPEKTAGRILFSALVATILWTATATVGVFEVFYTGELGPDQYLLRTPLGLLASLLWMTTVIYLPAQRIVTAMLFRRWTQPLMEKLSTSKSPSLIFGDGARYTVTDAMDALRFMLHKDGVEIVFCESTDPVSTLVAYLEGRELPTKVGLPAAASTSVQRAWLVMVSRELQKTRKGAHEASSISS
>NZ_CP015623.1|WP_066570205.1|47815_48313_-|ImmA/IrrE-family-metallo-endopeptidase
MMSLKKRRKIRRVACELAHTAASDENGLSLKSVLAATAKIRGLKGISIKVASLETGRLACARVADDIARISVTPGCATLQHTLAHELGHLVLGHKGIPGVEVDLDLSSCPPGLEALHRKMLPACFSRQEQMQSEWEAEFFASEFLTILPGAGRPRAVSELIYGLA
>NZ_CP015623.1|WP_066570206.1|48675_50163_+|hypothetical-protein
MRIVDSQDSRTHLPLARFEEKTAMTWGFSCQITQSESNQDVICNTTKKCSPRIIETLEPAQGFSGMSFESALGTCPQEALRRFSRLRTLDGILCRLRTEKGQDTFSKKFRGLPQGLTTEQELEWALREAEADHDAESAFTAWAHALDRTFNLRRDGRAKSFILPAPESGLRWQSRKLWIEGALADPQVTTAPAMKRMAKKHLPILLHAISDFADGVTGCGVAASHATIARRARQIAVERPEIDPGGRGKPLHQMTADSIEKNVRTLRAVLRNTGWAVDCAGGRHLTTVERCLAKILFGINQTKVASVQDLVTPERAWVREEPRDARPNWATSSNAFTLRLAARSLWKTARKIMFSSTYPARAQVSFIFKIFIGLLKKIKSFEIQKSAPKRRKTNRFAGVPDPSRESQKITADLRQSWGWLLPKTRSGQRMDPRVVARIIDEEGGSHLTAKKIKTFVDLRLSMNFWEFSPARIKNRLAWFRTILRDLLGTRGEDLL
>NZ_CP015623.1|WP_066570207.1|50368_53137_+|cutinase-family-protein
MRFSQSLSAVGATCATVAVVSGMLSPPVATAQTEDVLAQVVDAIPGAVQLPDLDGLPGTAGGLTAESGISALKQNEMVQNALAWETNTKAPVTEVSAGVQCAPLMLVAVPGTFEINRDQSASEPVGMLGSFAEPLQALGSGFSQTYIAYDADAGVSGTSYAQSVQRGVEKTLATIQDAQDNCDGRVVLAGFSQGAHIAGDVATLIGNRQTGVDPSTVAGVVLFADPKRDENANVLVGTSAEVPTLPAVVGDAVEKLMEDPSIAQLQMTAGQVSGIAGQLLGGQSDAGAEKTSAPVVAGQQSSPTSSVTPSHESSAVEMTNSSATVQAPTFSSAVHSVAAPVKVSQASNITGFSDTVDPELPTFDDSDDDATREAATGVIVPGRLGDSPRQSVLVDLSDAEKASLELGVGQVWATPENMAVLADHSDIIAERTDLVFDKVLDAGTQDTVDRVLGRDLVLQDQVGQVYRAGACDELTFADCVSLFSGAAGIAALTLQLETIGDDVPSDLVGIPAGNLMETGCVDASASACAATPVAESSTLPVAEFSQISDVSSVVGGVSGDASGDVVESSESTASETPTSESSESSASSVAAAGAQSRPTTEPAEEASSSTTSAAAGAVSRPTTSESPTTASTTASTSKKYEGTLGGATTGVSPDGEEVQGISPITMNAVAGGGVAGQREQGFGDLVGSVVSLCVPGDIVCSLPENSQLARDLVQIGENISTNMAGVAKEALAGNTRMGGLLAVEAVNTIAQVSGLPPLKLSPETIEMLITLVTGGAMIAAGDPTGAGVAMIASTIGQMPQALPELYAQLQDIPVIIEALPGVADNVARNLGLADIAQRLGVGFENAGMTNITDIGNLPAAVTSMATDLLEDNSGLMDLATNPDYLKTGAHSEAGFRSVYIADGIESFTWSQDWVAAIREMVS

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP015623_1	1.1|16724|33|NZ_CP015623|CRISPRCasFinder	16724-16756	33	NZ_CP015623	Corynebacterium crudilactis strain JZ16 plasmid pCRULAC1, complete sequence	16724-16756	0	1.0
NZ_CP015623_2	2.1|40323|54|NZ_CP015623|CRISPRCasFinder	40323-40376	54	NZ_CP015623	Corynebacterium crudilactis strain JZ16 plasmid pCRULAC1, complete sequence	40323-40376	0	1.0

1. spacer 1.1|16724|33|NZ_CP015623|CRISPRCasFinder matches to NZ_CP015623 (Corynebacterium crudilactis strain JZ16 plasmid pCRULAC1, complete sequence) position: , mismatch: 0, identity: 1.0

ccacttttcatagcgcggcgaacccggtctagc	CRISPR spacer
ccacttttcatagcgcggcgaacccggtctagc	Protospacer
*********************************

2. spacer 2.1|40323|54|NZ_CP015623|CRISPRCasFinder matches to NZ_CP015623 (Corynebacterium crudilactis strain JZ16 plasmid pCRULAC1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgccggtctaccaagcccccacccccacctaccagcagccggtctaccagcca	CRISPR spacer
gcgccggtctaccaagcccccacccccacctaccagcagccggtctaccagcca	Protospacer
******************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	119427 : 136216	20	Escherichia_phage(50.0%)	transposase	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP015623|119427:136216|DBSCAN-SWA
GATGATTTTGAATACCATTGCCGAAAAGCTGAAGCGCCAGTCGAAGGATGATTTCAAGGGCAGGCATTTCGAGGCCTGGCTGATTGTACAGGCGGTTGCCTGGTACTTGCGCTACCCGCTCAGCTATCGTGACTTGGAAGAGATGTTTCGCGAGCGGGGCTTCGAGGTCGATCATAGCACGATCAACCGCTGGGTATTGGCTTATGCACCTGTCATCGAGAAACGGCTGCGGCAGTTTCGTCGACCCCATTGCGGCTCGGTCCGGATTGATGAGACCTATGTCAAGATCCGCGGCAAATGGCGCTATCTGTACCGAGCCATCGATAAGCATGGCAATCCGGTGGATTTCCTGCTGACCGCTAAGCGCGATCTCGACGCTGCCAAGCGGTTCTTCCGAAAGATGCTTAAAGATGAACCCTTGTTGTCGCCGAACAGGATTGGGACGGACGGGGCCAACACCTTCCCGTCAACGATCAAAACGTCGGTTGATGATGGGCTTCTCCATCCCGATCCCGTGCATTATGTGACCAAACATCTCCAGCAGGGGATTGAGAGCGACCATTTCCGGGTGAAGAAGAACATGCCGAAGATCGGCGGTTTCCAATCCTTTAACACGGCGCGGCGAACCATCGCGGGTTTCGAGGCGATGCTGTGGCTGCGGAAGGGCTTTGGCTTTTCAGGCGGCTGGACCGTCAATGACCAGAATGATTTGCTTGCGCGCCTCTTCGGACTGCAAAAGGTTAACAAAGCATGAAAATACCGGCCTTGGCTGGGTGATAGCTGCCTCCAAAAGTGTTTGCGACACGCCCGGAACAATTCAGCCACTGCACCCATGTTCCGAGTTGGTGTGGTTTGCGGATCGTATGCCGGCATCTCGTTGCGCAAGATCTGCACCCAATCGGCAGGCACGGGCGGCGATCTCCAATCTGCGGGATCAGTCAGATCACCCGAGTGCGTGGGCATGACAATCGTGCCCTGGGGACCAACACAATCCAGAAGGGCCTGAATCACTGCGACCGGCCCTCCCGCGACCCAGCCGAGCGAGCTTAGCGAACTGTGGACGAGAACTGTGCCACCAAGCGTAAGGCCGTTCTCTCGCATTTGCCTTGCTAGGCTCGCGCGAGTTGCTGGCTGAGGCGTTCTCGAAATCAGCTCTTGTTCGGTCGGCATCTACTCTATTCCTTTGCCCTCGGACGAGTGCTGGGGCGTCGGTTTCCACTATCGGCGAGTACTTCTACACAGCCATCGGTCCAGACGGCCGCGCTTCTGCGGGCGATTTGTGTACGCCCGACAGTCCCGGCTCCGGATCGGACGATTGCGTCGCATCGACCCTGCGCCCAAGCTGCATCATCGAAATTGCCGTCAACCAAGCTCTGATAGAGTTGGTCAAGACCAATGCGGAGCATATACGCCCGGAGCCGCGGCGATCCTGCAAGCTCCGGATGCCTCCGCTCGAAGTAGCGCGTCTGCTGCTCCATACAAGCCAACCACGGCCTCCAGAAGAAGATGTTGGCGACCTCGTATTGGGAATCCCCGAACATCGCCTCGCTCCAGTCAATGACCGCTGTTATGCGGCCATTGTCCGTCAGGACATTGTTGGAGCCGAAATCCGCGTGCACGAGGTGCCGGACTTCGGGGCAGTCCTCGGCCCAAAGCATCAGCTCATCGAGAGCCTGCGCGACGGACGCACTGACGGTGTCGTCCATCACAGTTTGCCAGTGATACACATGGGGATCAGCAATCGCGCATATGAAATCACGCCATGTAGTGTATTGACCGATTCCTTGCGGTCCGAATGGGCCGAACCCGCTCGTCTGGCTAAGATCGGCCGCAGCGATCGCATCCATGGCCTCCGCGACCGGCTGCAGAACAGCGGGCAGTTCGGTTTCAGGCAGGTCTTGCAACGTGACACCCTGTGCACGGCGGGAGATGCAATAGGTCAGGCTCTCGCTGAATTCCCCAATGTCAAGCACTTCCGGAATCGGGAGCGCGGCCGATGCAAAGTGCCGATAAACATAACGATCTTTGTAGAAACCATCGGCGCAGCTATTTACCCGCAGGACATATCCACGCCCTCCTACATCGAAGCTGAAAGCACGAGATTCTTCGCCCTCCGAGAGCTGCATCAGGTCGGAGACGCTGTCGAACTTTTCGATCAGAAACTTCTCGACAGACGTCGCGGTGAGTTCAGGCTTTTTCATATCTCATTGCCCCCGGACGAGCGTCTGCTCCGCCATTCGCCGTCCGCCGTGCCAATCGGATCAGCCGTCCAAATGCGGGATTTTCGTTAGTCGGAGGCCAAACGGCATTGAGCGTCAGCATATCATCAGCGAGCTGAAGAAAGACAATCCCCGATCCGCTCCACGTGTTGCCCCAGCAATCAGCGCGACCTTGCCCCTCCAACGTCATCTCGTTCTCCGCTCATGAGCTCAGCCAATCGACTGGCGAGCGGCATCGCATTCTTCGCATCCCGCCTCTGGCGGATGCAGGAAGATCAACGGATCTCGGCCCAGTTGACCCAGGGCTGTCGCCACAATGTCGCGGGAGCGGATCAACCGAGCAAAGGCATGACCGACTGGACCTTCCTTCTGAAGGCTCTTCTCCTTGAGCCACCTGTCCGCCAAGGCAAAGCGCTCACAGCAGTGGTCATTCTCGAGATAATCGACGCGTACCAACTTGCCATCCTGAAGAATGGTGCAGTGTCTCGGCACCCCATAGGGAACCTTTGCCATCAACTCGGCAAGATGCAGCGTCGTGTTGGCATCGTGTCCCACGCCGAGGAGAAGTACCTGCCCATCGAGTTCATGGACACGGGCGACCGGGCTTGCAGGCGAGTGAGGTGGCAGGGGCAATGGATCAGAGATGATCTGCTCTGCCTGTGGCCCCGCTGCCGCAAAGGCAAATGGATGGGCGCTGCGCTTTACATTTGGCAGGCGCCAGAATGTGTCAGAGACAACTCCAAGGTCCGGTGTAACGGGCGACGTGGCAGGATCGAACGGCTCGTCGTCCAGACCTGACCACGAGGGCATGACGAGCGTCCCTCCCGGACCCAGCGCAGCACGCAGGGCCTCGATCAGTCCAAGTGGCCCATCTTCGAGGGGCCGGACGCTACGGAAGGAGCTGTGGACCAGCAGCACACCGCCGGGGGTAACCCCAAGGTTGAGAAGCTGACCGATGAGCTCGGCTTTTCGCCATTCGTATTGCACGACATTGCACTCCACCGCTGATGACATCAGTCGATCATAGCACGATCAACGGCACTGTTGCAAATAGTCGGTGGTGATAAACTTATCATCCCCTTTTGCTGATGGAGCTGCACATGAACCCATTCAAAGGCCGGCATTTTCAGCGTGACATCATTCTGTGGGCCGTACGCTGGTACTGCAAATACGGCATCAGTTACCGTGAGCTGCAGGAGATGCTGGCTGAACGCGGAGTGAATGTCGATCACTCCACGATTTACCGCTGGGTTCAGCGTTATGCGCCTGAAATGGAAAAACGGCTGCGCTGGTACTGGCGTAACCCTTCCGATCTTTGCCCGTGGCACATGGATGAAACCTACGTGAAGGTCAATGGCCGCTGGGCGTATCTGTACCGGGCCGTCGACAGCCGGGGCCGCACTGTCGATTTTTATCTCTCCTCCCGTCGTAACAGCAAAGCTGCATACCGGTTTCTGGGTAAAATCCTCAACAACGTGAAGAAGTGGCAGATCCCGCGATTCATCAACACGGATAAAGCGCCCGCCTATGGTCGCGCGCTTGCTCTGCTCAAACGCGAAGGCCGGTGCCCGTCTGACGTTGAACACCGACAGATTAAGTACCGGAACAACGTGATTGAATGCGATCATGGCAAACTGAAACGGATAATCGGCGCCACGCTGGGATTTAAATCCATGAAGACGGCTTACGCCACCATCAAAGGTATTGAGGTGATGCGTGCACTACGCAAAGGCCAGGCCTCAGCATTTTATTATGGTGATCCCCTGGGCGAAATGCGCCTGGTAAGCAGAGTTTTTGAAATGTAAGGCCTTTGAATAAGACAAAAGGCTGCCTCATCGCTAACTTTGCAACAGTGCCATTTTAAGCGTTATGCTAAGCCCAGGAAGCCGCAGGATCTTTTGAACCACAACTGCATTAACGTCCGCTATTCTGATACGAGTGGATTGTACGCCTGGGAATTCGAGAAAGATGCTCAGAAATTCAGTCTGAAAGTCAAAGGGCAATATATTGCGAACAGCACGATTCATCAGCTCGATGCAGCATTAGACGGGCTGGGGATTGCCTATATTCCCGAGTATGTTGCAGATGGATATATCAAAAGCGGCAAGCTGATTGCTGTTCTGACCGAGTGGTGTCCATATTTTGACGGCTACCATATTTATTATCCTCACCGCCGACAGGATTCTCCTGCGTTTATGGCTTTTCTGCAAGTTTTGCGTGACAGGTACAATAATGGAATAAGATAAATTTATGAGTAAAGGATTATGTCCACGATAAGCACCTGGGTCGATTCCTGGGAGGCGGCCATGAGGGTAGGGAAGCGCCGTCCCGTCAAGTCAGCGTAATGCTCTGCCAGTGTTACAACCAATTAACCAATTCTGATTAGAAAAACTCATCGAGCATCAAATGAAACTGCAATTTATTCATATCAGGATTATCAATACCATATTTTTGAAAAAGCCGTTTCTGTAATGAAGGAGAAAACTCACCGAGGCAGTTCCATAGGATGGCAAGATCCTGGTATCGGTCTGCGATTCCGACTCGTCCAACATCAATACAACCTATTAATTTCCCCTCGTCAAAAATAAGGTTATCAAGTGAGAAATCACCATGAGTGACGACTGAATCCGGTGAGAATGGCAAAAGCTTATGCATTTCTTTCCAGACTTGTTCAACAGGCCAGCCATTACGCTCGTCATCAAAATCACTCGCATCAACCAAACCGTTATTCATTCGTGATTGCGCCTGAGCGAGACGAAATGCGCGATCGCTGTTAAAAGGACAATTACAAACAGGAATCGAATGCAACCGGCGCAGGAACGCTGCCAGCGCATCAACAATATTTTCACCTGAATCAGGATATTCTTCTAATACCTGGAATGCTGTTTTCCCGGGGATCGCAGTGGTGAGTAACCATGCATCATCAGGAGTACGGATAAAATGCTTGATGGTCGGAAGAGGCATAAATGCCGTCAGCCAGTTTAGTCTGACCATCTCATCTGTAACATCATTGGCAACGCTACCTTTGCCATGTTTCAGAAACAACTCTGGCGCATCGGGCTTCCCATACAATCGATAGATTGTCGCACCTGATTGCCCGACATTATCGCGAGCCCATCTATACCCATATAAATCAGCATCCAGGTTGGAATTTAATCGCGGCCTCGAGCAAGACGTTTCCCGTTGAATATGGCTCATAACACCCCTTGTATTACTGTTTATGTAAGCAGACAGTTTTATTGTTCATGATGATATATTTTTATCGGCACTGTTGCAAATAGTCGGTGGTGATAAACTTATCATCCCCTTTTGCTGATGGAGCTGCACATGAACCCATTCAAAGGCCGGCATTTTCAGCGTGACATCATTCTGTGGGCCGTACGCTGGTACTGCAAATACGGCATCAGTTACCGTGAGCTGCAGGAGATGCTGGCTGAACGCGGAGTGAATGTCGATCACTCCACGATTTACCGCTGGGTTCAGCGTTATGCGCCTGAAATGGAAAAACGGCTGCGCTGGTACTGGCGTAACCCTTCCGATCTTTGCCCGTGGCACATGGATGAAACCTACGTGAAGGTCAATGGCCGCTGGGCGTATCTGTACCGGGCCGTCGACAGCCGGGGCCGCACTGTCGATTTTTATCTCTCCTCCCGTCGTAACAGCAAAGCTGCATACCGGTTTCTGGGTAAAATCCTCAACAACGTGAAGAAGTGGCAGATCCCGCGATTCATCAACACGGATAAAGCGCCCGCCTATGGTCGCGCGCTTGCTCTGCTCAAACGCGAAGGCCGGTGCCCGTCTGACGTTGAACACCGACAGATTAAGTACCGGAACAACGTGATTGAATGCGATCATGGCAAACTGAAACGGATAATCGGCGCCACGCTGGGATTTAAATCCATGAAGACGGCTTACGCCACCATCAAAGGTATTGAGGTGATGCGTGCACTACGCAAAGGCCAGGCCTCAGCATTTTATTATGGTGATCCCCTGGGCGAAATGCGCCTGGTAAGCAGAGTTTTTGAAATGTAAGGCCTTTGAATAAGACAAAAGGCTGCCTCATCGCTAACTTTGCAACAGTGCCCCTGGCGATGGCACTGGGTTACAAGGCGACGCAAGCCGGCATCAAGACGCGCTTCACGACTGCGGCCGACCTGATGCTGGCGTTGACGACGGCGCATACCCAGAACAATCTGAAGGCGGTGATGCACCGCGCGATCAAGGCATATCGGCTCTTGATCATCGACGAGATAGGTTACTTGCCGATGAACCGGGAACAGGCAAACCTGTTCTTCCAGGTGATCGCAGCCTTGTATGAACGCAGCAGCCTGATCGTGACCAGCAACCTGCCGTTCGGGCAATGGGACACGACCTTCGCGCAGGATACGACGCTGACCGCGGCCCTGCTCGACCGGCTGCTGCACCATGCGCACATCGTGCCGATTGCCGGGGAAAGCTATCGGCTGAAGCACCAGCGACAGGCCGGGATGATGAGGGGGAGCGATGTTGCAGAAATTGGCTGAACACGGACGGTGTTCAGCGACGGCGGTGTATCAGTTTTAAATCGCTGGCACGAAAAAATCTGTATCAGTTTTCAATCGCCGTTGACAAACGGGACAATATCTATGATGATCTTGCTTCCGGCGGTCGTGATGATCGCCCTGGCTTGACTGCCTGCCTCAAGTCATTGCGTGACGGCGATGTGCTGGTGGTCTGGAAGCTCGATCGCCTCGGACGATCGCTTGCCCATCTGGTCAACACGGTGAAGGAGCTGTCAGACCGCAAGATCGGCCTGCGGGTTCTGACTGGAAAGGGCGCTCAGATCGACACCACGACTGCGTCCGGTCGCATGGTGTTCGGAATCTTCGCCACCTTGGCCGAGTTCGAGCGGGATCTGATCCGAGAGCGCACCATGGCGGGTCTCGCCTCCGCGAGAGCGCGCGGTCGCAAGGGCGGACGAAAATTCGCGCTCACCAAAGCTCAGGTGCGTCTCGCGCAAGCCGCCATGGCCCAGCGCGATACTTCAGTTTCCGATCTCTGCAAGGAACTCGGCATCGAGCGCGTCACTCTCTACCGATATGTCGGTCCCAAAGGCGAGCTCAGAGACCATGGAAAGCATGTTCTCGGACTTACGTAGCAACTCGTTTCTTTTCGCAGGTTGAGCCACCTCCGCGCTTCATCAGAAAACTGAAGGAACCTCCATTGAATCGAACTAATATTTTTTTTGGTGAATCGCATTCTGACTGGTTGCCTGTCAGAGGCGGAGAATCTGGTGATTTTGTTTTTCGACGTGGTGACGGGCATGCCTTCGCGAAAATCGCACCTGCTTCCCGCCGCGGTGAGCTCGCTGGAGAGCGTGACCGCCTCATTTGGCTCAAAGGTCGAGGTGTGGCTTGCCCCGAGGTGATCAACTGGCAGGAGGAACAGGAGGGTGCATGCTTGGTGATAACGGCAATTCCGGGAGTACCGGCGGCTGATCTGTCTGGAGCGGATTTGCTCAAAGCGTGGCCGTCAATGGGGCAGCAACTTGGCGCTGTTCACAGCCTATCGGTTGATCAATGTCCGTTTGAGCGCAGGCTGTCGCGAATGTTCGGACGCGCCGTTGATGTGGTGTCCCGCAATGCCGTCAATCCCGACTTCTTACCGGACGAGGACAAGAGTACGCCGCAGCTCGATCTTTTGGCTCGTGTCGAACGAGAGCTACCGGTGCGGCTCGACCAAGAGCGCACCGATATGGTTGTTTGCCATGGTGATCCCTGCATGCCGAACTTCATGGTGGACCCTAAAACTCTTCAATGCACGGGTCTGATCGACCTTGGGCGGCTCGGAACAGCAGATCGCTATGCCGATTTGGCACTCATGATTGCTAACGCCGAAGAGAACTGGGCAGCGCCAGATGAAGCAGAGCGCGCCTTCGCTGTCCTATTCAATGTATTGGGGATCGAAGCCCCCGACCGCGAACGCCTTGCCTTCTATCTGCGATTGGACCCTCTGACTTGGGGTTGATGTTCATGCCGCCTGTTTTTCCTGCTCATTGGCACGTTTCGCAACCTGTTCTCATTGCGGACACCTTTTCCAGCCTCGTTTGGAAAGTTTCATTGCCAGACGGGACTCCTGCAATCGTCAAGGGATTGAAACCTATAGAAGACATTGCTGATGAACTGCGCGGGGCCGACTATCTGGTATGGCGCAATGGGAGGGGAGCAGTCCGGTTGCTCGGTCGTGAGAACAATCTGATGTTGCTCGAATATGCCGGGGAGCGAATGCTCTCTCACATCGTTGCCGAGCACGGCGACTACCAGGCGACCGAAATTGCAGCGGAACTAATGGCGAAGCTGTATGCCGCATCTGAGGAACCCCTGCCTTCTGCCCTTCTCCCGATCCGGGATCGCTTTGCAGCTTTGTTTCAGCGGGCGCGCGATGATCAAAACGCAGGTTGTCAAACTGACTACGTCCACGCGGCGATTATAGCCGATCAAATGATGAGCAATGCCTCGGAACTGCGTGGGCTACATGGCGATCTGCATCATGAAAACATCATGTTCTCCAGTCGCGGCTGGCTGGTGATAGATCCCGTCGGTCTGGTCGGTGAAGTGGGCTTTGGCGCCGCCAATATGTTCTACGATCCGGCTGACAGAGACGACCTTTGTCTCGATCCTAGACGCATTGCACAGATGGCGGACGCATTCTCTCGTGCGCTGGACGTCGATCCGCGTCGCCTGCTCGACCAGGCGTACGCTTATGGGTGCCTTTCCGCAGCTTGGAACGCGGATGGAGAAGAGGAGCAACGCGATCTAGCTATCGCGGCCGCGATCAAGCAGGTGCGACAGACGTCATACTAGATATCAAGCGACTTCTCCTATCCCCTGGGAACACATCAATCTTACCGGAGAATATCGTTGGCCAAAGCCTTAGCGTAGGATTTCGCCCTCTCCCGCAAACGACCCCTGAATGTTCACTTCCACATGCTGTTTCTCGACGGTGTGTATGTCGAGCAATCCCACGGCTCAGCGCGTTTCCGCTGGGTCAAGGCGCCGACCAGCCCAGAGCTCACCCAGCTGACGCACACCATCGCCCACCGGGTGGGTCGCTATCTGGAACGGCAAGGCCTGCTGGAACGGGATGTCGAAAACAGCTATCTGGCCTCGGATGCGGTGGATGACGACCCGATGACACCCCTGCTGGGGCACTCGATCACTTACCGTATCGCTGTCGGTTCACAGGCGGGGCGAAAGGTGTTCACTTTGCAAACTCTGCCGACCAGTGGTGATCCGTTCGGTGACGGGATTGGCAAGGTAGCCGGGTCCAGCCTGCACGCCGGCGTGGCGGCCAGGGCCGATGAACGCAAGAAGCTCGAACGGCTGTGCCGGTACATCAGCCGCCCGGCGGTATCCGAGAAGCGGCTGTCGTTAACACGAGGCGGCAACGTGCGCTACCAGCTCAAGACGCCGTACCGGGACGGCACCACGCACGTCATTTTCGAACCATTGGATTTCATTGCAAGGCTGGCCGCCCTGGTACCGAAGCCCAGAGTCAACCTAACCCGCTTCCACGGGGTGTTCGCACCCAACAGTCGGCACCGGGCGTTGGTCACGCCGGCAAAACGGGGCAGGGGCAACAAGGTCAGGGTGGCTGATGAACCGGCAACACCAGCACAACGGCGAGCGTCGATGACATGGGCGCAACGGCTCAAGCGTGTTTTCAATATCGACATCGAGACCTGCAGCGGCTGCGGCGGCGCCATGAAAGTCATCGCCTGCATTGAAGACCCTATAGTGATCAAGCAGATCCTTGATCACCTGAAGCACAAAGCCGAAACCAGCGGGACCAGGGCGTTACCCGAAAGCCGGGCGCCACCGGCTGAGCTGCTCCTGGGTCTGTTTGACTGACGAGCCTGAAGGCCAACGATACCAATCAAAATGCTGCGTTCACAGCGCCGCGGCAGGGATCCGCCGTGCTGGTTGTCGGAAAAGGAGCCGCTAGTGGGAAAGAGGAGGGTAAATTTTCAGCGTTGCTGGCTCCCCGTCAGCCGGATTGGGTTGCATCGCAGGGGTGTCGAAAGAGTCAACTGCGGTCCAAAGCTGTTGGACTTGGGTGAAAAGGGCGTTTATTCTTCCTATACGTCCGTATCAGTTTGCTGTTTTGAAATACAACGGCGGCGGTGACTATTACGCCAATCCTACCTCTGTACCGAATTTAGTGAAATTCTGCAATGAGCAGCTGAACATGAATATTTCTCCGGATGTTCCGTATGTGGACGTCGGAAGTCCGGATCTGTTCCTGTACCCGTTTGTTCACATGACGGGACACGGAAATGTGGTCTTTTCCGCTCAGGAAGCGGAGAACCTGAGAACTTATCTGATGGGTGGTGGTTTCCTTCACATTGACGATAATTACGGGATGGATCAGTTTATTCGGGTGGAAATTAAAAAGCTGTTTCCCAATCACGAATTGGTAGAACTGCCTTATAACCATGCGATCTTCAATCAGAAGTACAAATTCAACGGGTTGCCTAAAATTCACGAGCATGATAATAAGCGGGCACAGGCATTTGCGATTATCGAAAACGGAAAAGTAGTTTTACTATATACCTATGAAACCGACCTGGGAGACGGGTGGGAAGATCAGGCAGTACATAATAATTCACAGGAAAAACGCAGGCAGGCACTACAAATGGGAGCAAATATCGTAATGTATGCGTTTACAGAATAAAGCAAAGTTGCTCATTCAAAAAAACAGGCTTTATACACCGGATACAACAGAAAATTAATCTATCGCTGAATCGTTTTTTGTGTACTTCACTATTTTAAATCCGGCTTCGTGTTTTTCATCGGCAGGGTGTTGACAGACTTCTTCTTTCTTCCATTCCGATTCATTCAGTTGTGGGAAAAACGTATCAGCATCATAGCTCTTATCAACATGAGTAATGTACATTTCACTGACAACATTCAGTGCCTGTTTATAAATTTCTCCGCCACCGATAATAAATACGGTACGATCGGTTTCATTTTTATAATGCTCCAGGCATTCTTCCAAGGAATGGAAAAGCAGGCAACCGGGAGCGGCATATGATGTATTTCGTGTAAGCACGGCATTTTCCCGGTTGGGAAGCGGACGAAACCGTTCGGGAATGGATTCGTAATTTTTACGCCCCAGCACAACAATGTTTCCGGTGGTCGTTTCTCTGAAAAAGCGCATATCTGCCGGGAGGTGCCACATCAGATCATTGTTTTTTCCAATGCCCCCTTCCCTGTCCATTGCTACGATTAACGAAATTTTCATTTTACTTCTGTTATTCCAAACCGGTTAACGTGAACAATCTTTGTTTCGGTTTTATTGAGAACAATGGCATCAATTACCTTCTTATTTCCTTCCGCAGCCACCAGCGAATCCGAATAACCGATCAGGTAATGGATCTTCCCGTTCAGATCATTCACTTTGTAAACAATTGCCATGTGCGGAAGTTCCTCCTTCAGGTGTTTTAACTCAGCCTCTTTTACCTTTACGGCATAATATCCTTTCATGATCCGCTCAACTGCAGCGTCTCTGTCCATGCGGTACTCTCTGATGTTTTTCCCGTGTTTTTCCATCAGCTGGCGACTGTCTGCAAAAAACAAATCTCTGGCAGCCCGATCTGCACTGCTGAAAAACGTGCTGTCCAGTTCGTCGTATCCATAGTCGGGAAGTACATAGTAATGCTTGAAAGGTCCTTCTACTGCCGTATGTACATAAGCGAGTATGTAGTCGGCATCTTTTAAAACAACCTTACCCGCTTTTCGTTCAATGGTGCTACGCAGGATCATTCCTCCGTTTTTATAGCGATCCGTACTCAAGCCAGCCGCTTGTGCGTTGGCCTCAATGGCGGCCCGCTCTTCCGGCAGGCAATACACCTTGATCGGCGTGCTGCTTTTTCTCGTTACCTTCTGCTCTGTCGCCTCCATCTTTGGCGTCCTCCTGGTTCTCTTATTCCGGCGTCCGCCGATGGCCCCGCAGGGCAGGATTCCCGTTGAGCGCCGCAGGTGCGAATAAGGGGAAGTGAAGAGGAACACCATGCTTGCATGGTGGGCCTACTTCACACATCCTGCCCGCTTCACCACCACTTTAACATCACTACCATTTACCGGCTATAACCCGTTTTATCGACAAACACAAGCCGATTCCACGCATAAGGCGTGCAATCTGGCTTTAGTCGCCTTACAATCGCTTTAATAGCGATAGAATCGGCATTAAATCGCGGATAAATCGACATATAAAAGGCGGTAGAATCGGCATGACTAAACGGCTTACAGAGCGCATTGCAGCGCAAATGCAGACCCAAAAGCCCACCCGTTCAGGACAGAATCGGGCGGCTTTCCTGGCCCAGCGCGACGACATAAAAGAGGCTTTGACCGATGGCTGGCCGGTAAAAGCCATCTGGAAAACGCTGCACGATGAAGGGAAAATCAGCTTCGGATATGATGCTTTTATCAGCTATGTGAACAGTCTGATTCGGTCGCCAGGCGAGCCTGAAAAGGCCACCGCAAGACCGCCGGCATCCTCCCAACCGGCCCCCAAGAAAGCCACCCCAGCGACACCCAAACCAGTACCATCAGCCAGCCATAAGCCGGGGGAGATTCCCAGCTTCAACTTCAACCCCAGCCCGAACAAAGCGGACTTGATTTGACGCCCCAAGGGGCGGATTGGACGCCAAGAGGGAAGGCATAGCCCGCCCCTCAAGTGTCAATGAACCCCTGGAAATCGACCCCGAAAACAGCCCCCTTCATAGAGGCGGCCTATTAACATTTGAGTGGGAGTGACGGGCACTGGCTGGCAATGTCTAGCAACGGCAGGCATTTCGGCTGAGGGTAAAAGAACTTTCCGCTAAGCGATAGACTGTATGTAAACACAGTATTGCAAGGACGCGGAACATGCCTCATGTGGCGGCCAGGACGGCCAGCCGGGATCGGGATACTGGTCGTTACCAGAGCCACCGACCCGAGCAAACCCTTCTCTATCAGATCGTTGACGAGTATTACCCGGCATTCGCTGCGCTTATGGCAGAGCAGGGAAAGGAATTGCCGGGCTATGTGCAACGGGAATTTGAAGAATTTCTCCAATGCGGGCGGCTGGAGCATGGCTTTCTACGGGTTCGCTGCGAGTCTTGCCACGCCGAGCACCTGGTCGCTTTCAGCTGTAAGCGTCGCGGTTTCTGCCCGAGCTGTGGGGCGCGGCGGATGGCCGAAAGTGCCGCCTTGCTGGTTGATGAAGTACTGCCTGAACAACCCATGCGTCAGTGGGTGTTGAGCTTCCCGTTTCAGCTGCGTTTCCTGTTTGCCAGCCGGCCCGAGATCATGGGGTGGGTGCTGGGCATCGTTTACCGCGTCATTGCCACGCACCTGGTCAAGAAAGCGGGCCATACCCACCAAGTGGCCAAGACGGGCGCGGTCACCCTGATCCAGCGTTTTGGATCGGCGCTCAATCTGAATGTTCACTTCCACATGCTGTTTCTCGACGGTGTGTATGTCGAGCAATCCCACGGCTCAGCGCGTTTCCGCTGGGTCAAGGCGCCGACCAGCCCAGAGCTCACCCAGCTGACGCACACCATCGCCCACCGGGTGGGTCGCTATCTGGAACGGCAAGGCCTGCTGGAACGGGATGTCGAAAACAGCTATCTGGCCTCGGATGCGGTGGATGACGACCCGATGACACCCCTGCTGGGGCACTCGATCACTTACCGTATCGCTGTCGGTTCACAGGCGGGGCGAAAGGTGTTCACTTTGCAAACTCTGCCGACCAGTGGTGATCCGTTCGGTGACGGGATTGGCAAGGTAGCCGGGTCCAGCCTGCACGCCGGCGTGGCGGCCAGGGCCGATGAACGCAAGAAGCTCGAACGGCTGTGCCGGTACATCAGCCGCCCGGCGGTATCCGAGAAGCGGCTGTCGTTAACACGAGGCGGCAACGTGCGCTACCAGCTCAAGACGCCGTACCGGGACGGCACCACGCACGTCATTTTCGAACCATTGGATTTCATTGCAAGGCTGGCCGCCCTGGTACCGAAGCCCAGAGTCAACCTAACCCGCTTCCACGGGGTGTTCGCACCCAACAGTCGGCACCGGGCGTTGGTCACGCCGGCAAAACGGGGCAGGGGCAACAAGGTCAGGGTGGCTGATGAACCGGCAACACCAGCACAACGGCGAGCGTCGATGACATGGGCGCAACGGCTCAAGCGTGTTTTCAATATCGACATCGAGACCTGCAGCGGCTGCGGCGGCGCCATGAAAGTCATCGCCTGCATTGAAGACCCTATAGTGATCAAGCAGATCCTTGATCACCTGAAGCACAAAGCCGAAACCAGCGGGACCAGGGCGTTACCCGAAAGCCGGGCGCCACCGGCTGAGCTGCTCCTGGGTCTGTTTGACTGACGAGCCTGAAGGCCAACGATACCAATCAAAATGCTGCGTTCACAGCGCCGCGGCAGGGATCCGCCGTGCTGGTTGTCGGAAAAGGAGCCGCTAGTGGGAAAGAGGAGGGTAAATTTTCAGCGTTGCTGGCTCCCCGTCAGCCGGATTGGGTTGCATCGCAGGGGTGTCGAAAGAGTCAACTGCGGTCCAAAGCTGTTGGACTTGGGTGAAAAGGGCGTTTATTCTTCCTATACGTTGTCGGCAGCGGGCCAAAAAGGAATACGTCCATGCCCATCGAGGTGAAACCGGCTGTGAGCGCGGGTTCAAGCATATAGCCCGACAGGCGCGTATCCTTGCCGATCACGACACGATGGCGGTGGTCACCGCGACGAAAGACACGGCCAGCCGCCATGCCGACGCGCAAGGCGGTTTCCGCCGTCATCGCGCCTTCGTTGGCTTTGCCACGAATACCGTCTGTGCCGAAATATTTGCGCACCATAAGGTCGATTATCCTGTCGTCGGGTCGCCCTCAAAGGGGACATGCCTGCTGAACCGCGAATATAGAGAAATATCCCGAATGTGCAGTTAACGAATTCTTGCGGTTTCTTTCAGCGCCGCCAATACCGCCAGCCCGTCGCGCAAGGGGCGCGGCTCGTGTGTGCGGATGAAGTCAGCTCCACCTGCGGCGGCGGCAAGCTCTGCAGCGAGTGTCGCGGCCCCGACATCCCCCGGACCACGGCCTGTGAGCGCGCGCAGAAAGGATTTGCGCGAAACAGACAGAAGCACCGGCAAATCGAAGCGCAGCCGCAATTCATCGAACCGCGCCAGCACCGAGAGCGAGGTTTCGGGAGCAGCCCCCAGAAAAAACCCCATGCCGGGATCAAGGACAAGGCGGTTGCGTTTGATACCGGCACCCGTCAGCGCCGCGATGCGCGCGTCAAAGAACGCCGCAATGTGATCCATGATGTCGCCAGCGGGTGCCTCGCGCCGATCTGCCTGCCCGTCTTGCACCGAATGCATAACGACGAGTTTGGCAGATGATTTCGCCAATTGCGGATAGAACGCAGCGTCTGGAAAACCGCGAATATCATTGAGATAGGCCACACCACGCGACAAGGCATAGGCTTGCGTCGCGGGTTGATAACTGTCGAGCGAGACGGGAATGCCATCTGCCTTGAGCGCGTCCAGCACCGGCGCGATACGCGCGATTTCTGTGTCGGACGAAACAGGCGCGGCGTCGGGATTGCTGGATGCCGGACCGAGGTCGATCACATCTGCCCCCTCGGCCATCAGCTTACGCGCCTGCGCAATGGCTGCGTCTGGCGCCAGATACCGGCCTCCATCGGAGAAACTGTCCGAGGTTATGTTGACGATGCCGAAAATGATGAGCGATTTATTCATGGGGGCTTCTATAATAATAATAATCGGTGCTGTTGCAAAGTTGGGGCAGTAGGAAGACCGGCGTGGAATAATCAGGGCCATGGGCATCTTCTCCGGTCGTCATTTCCCTCGTGAAATCATCCTGTGGGCGGTGCGGTGGTACTGCCGATACGGTGTGAGCTACCGCGACCTCGAAGAGATGATGACCGAGCGTGGCGTGCCGGTCGATCACACCACGATCTACCGCTGGGTCCAGAAATATGCTCCTGAGCTGGATAAGAAGACCCGGTGGTATCGGCAAGTTCCTGACTGGCAGGCCAGGTCCTGGCGGGTGGACGAGACCTATATCCGGGTCGGCGGGACGTGGTGCTACCTCTATCGGGCGATCACCGCTGGTGGAAACACCCTGGATTTTTATCTCTCGCCGAAGCGGAATGTGGCTGCAGCCAAGCGTTTCCTGGCCAAGACCCTGCGGTCGAACACAACAGCCGGCTTTCCCCGGGTGATCAACACCGACAAGGCACCCTCACTCGCCAGGGCAATCTCTGAGCTGAAGGCGGAAGGCGTCTGCCCATCGACGGTAGAGCATCGTCGGGTGAAATACCTCAACAACGTCATCGAAGGCGATCATGGCCGGTTGAAACGGATCCTGGGGCCAAAAGGGGCCTTTAAGAACAGGGCGTCTGCCTATCGGACGTTGAAAGGGATGGAAGCGATGCACTCGTTACGAAAAGGCCAGGGGACGATGTTTGCCTACGGGCAGTCGAACCCGGACGCGGTGATCGTCAGTCGGGTGTTCGAGGCTGCCTGA

Protein sequences of DBSCAN-SWA_1

>NZ_CP015623|119427:136216|134221_134524_-|WP_000251875.1|DBSCAN-SWA
MVRKYFGTDGIRGKANEGAMTAETALRVGMAAGRVFRRGDHRHRVVIGKDTRLSGYMLEPALTAGFTSMGMDVFLFGPLPTTYRKNKRPFHPSPTALDRS
>NZ_CP015623|119427:136216|126847_127651_+|WP_001082319.1|DBSCAN-SWA
MNRTNIFFGESHSDWLPVRGGESGDFVFRRGDGHAFAKIAPASRRGELAGERDRLIWLKGRGVACPEVINWQEEQEGACLVITAIPGVPAADLSGADLLKAWPSMGQQLGAVHSLSVDQCPFERRLSRMFGRAVDVVSRNAVNPDFLPDEDKSTPQLDLLARVERELPVRLDQERTDMVVCHGDPCMPNFMVDPKTLQCTGLIDLGRLGTADRYADLALMIANAEENWAAPDEAERAFAVLFNVLGIEAPDRERLAFYLRLDPLTWG
>NZ_CP015623|119427:136216|122745_123450_+|WP_001067855.1|transposase|DBSCAN-SWA
MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
>NZ_CP015623|119427:136216|126242_126782_+|WP_094078587.1|DBSCAN-SWA
MAVDKRDNIYDDLASGGRDDRPGLTACLKSLRDGDVLVVWKLDRLGRSLAHLVNTVKELSDRKIGLRVLTGKGAQIDTTTASGRMVFGIFATLAEFERDLIRERTMAGLASARARGRKGGRKFALTKAQVRLAQAAMAQRDTSVSDLCKELGIERVTLYRYVGPKGELRDHGKHVLGLT
>NZ_CP015623|119427:136216|132552_134046_+|WP_001120888.1|transposase|DBSCAN-SWA
MPHVAARTASRDRDTGRYQSHRPEQTLLYQIVDEYYPAFAALMAEQGKELPGYVQREFEEFLQCGRLEHGFLRVRCESCHAEHLVAFSCKRRGFCPSCGARRMAESAALLVDEVLPEQPMRQWVLSFPFQLRFLFASRPEIMGWVLGIVYRVIATHLVKKAGHTHQVAKTGAVTLIQRFGSALNLNVHFHMLFLDGVYVEQSHGSARFRWVKAPTSPELTQLTHTIAHRVGRYLERQGLLERDVENSYLASDAVDDDPMTPLLGHSITYRIAVGSQAGRKVFTLQTLPTSGDPFGDGIGKVAGSSLHAGVAARADERKKLERLCRYISRPAVSEKRLSLTRGGNVRYQLKTPYRDGTTHVIFEPLDFIARLAALVPKPRVNLTRFHGVFAPNSRHRALVTPAKRGRGNKVRVADEPATPAQRRASMTWAQRLKRVFNIDIETCSGCGGAMKVIACIEDPIVIKQILDHLKHKAETSGTRALPESRAPPAELLLGLFD
>NZ_CP015623|119427:136216|121855_122632_-|WP_001199192.1|DBSCAN-SWA
MQYEWRKAELIGQLLNLGVTPGGVLLVHSSFRSVRPLEDGPLGLIEALRAALGPGGTLVMPSWSGLDDEPFDPATSPVTPDLGVVSDTFWRLPNVKRSAHPFAFAAAGPQAEQIISDPLPLPPHSPASPVARVHELDGQVLLLGVGHDANTTLHLAELMAKVPYGVPRHCTILQDGKLVRVDYLENDHCCERFALADRWLKEKSLQKEGPVGHAFARLIRSRDIVATALGQLGRDPLIFLHPPEAGCEECDAARQSIG
>NZ_CP015623|119427:136216|120601_121627_-|WP_000742814.1|DBSCAN-SWA
MKKPELTATSVEKFLIEKFDSVSDLMQLSEGEESRAFSFDVGGRGYVLRVNSCADGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRAQGVTLQDLPETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQTVMDDTVSASVAQALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMFGDSQYEVANIFFWRPWLACMEQQTRYFERRHPELAGSPRLRAYMLRIGLDQLYQSLVDGNFDDAAWAQGRCDAIVRSGAGTVGRTQIARRSAAVWTDGCVEVLADSGNRRPSTRPRAKE
>NZ_CP015623|119427:136216|135505_136216_+|WP_066570492.1|transposase|DBSCAN-SWA
MGIFSGRHFPREIILWAVRWYCRYGVSYRDLEEMMTERGVPVDHTTIYRWVQKYAPELDKKTRWYRQVPDWQARSWRVDETYIRVGGTWCYLYRAITAGGNTLDFYLSPKRNVAAAKRFLAKTLRSNTTAGFPRVINTDKAPSLARAISELKAEGVCPSTVEHRRVKYLNNVIEGDHGRLKRILGPKGAFKNRASAYRTLKGMEAMHSLRKGQGTMFAYGQSNPDAVIVSRVFEAA
>NZ_CP015623|119427:136216|129739_130357_+|WP_066570478.1|DBSCAN-SWA
MKRAFILPIRPYQFAVLKYNGGGDYYANPTSVPNLVKFCNEQLNMNISPDVPYVDVGSPDLFLYPFVHMTGHGNVVFSAQEAENLRTYLMGGGFLHIDDNYGMDQFIRVEIKKLFPNHELVELPYNHAIFNQKYKFNGLPKIHEHDNKRAQAFAIIENGKVVLLYTYETDLGDGWEDQAVHNNSQEKRRQALQMGANIVMYAFTE
>NZ_CP015623|119427:136216|128610_129534_+|WP_000898043.1|transposase|DBSCAN-SWA
MLFLDGVYVEQSHGSARFRWVKAPTSPELTQLTHTIAHRVGRYLERQGLLERDVENSYLASDAVDDDPMTPLLGHSITYRIAVGSQAGRKVFTLQTLPTSGDPFGDGIGKVAGSSLHAGVAARADERKKLERLCRYISRPAVSEKRLSLTRGGNVRYQLKTPYRDGTTHVIFEPLDFIARLAALVPKPRVNLTRFHGVFAPNSRHRALVTPAKRGRGNKVRVADEPATPAQRRASMTWAQRLKRVFNIDIETCSGCGGAMKVIACIEDPIVIKQILDHLKHKAETSGTRALPESRAPPAELLLGLFD
>NZ_CP015623|119427:136216|119427_120180_+|WP_000602738.1|transposase|DBSCAN-SWA
MILNTIAEKLKRQSKDDFKGRHFEAWLIVQAVAWYLRYPLSYRDLEEMFRERGFEVDHSTINRWVLAYAPVIEKRLRQFRRPHCGSVRIDETYVKIRGKWRYLYRAIDKHGNPVDFLLTAKRDLDAAKRFFRKMLKDEPLLSPNRIGTDGANTFPSTIKTSVDDGLLHPDPVHYVTKHLQQGIESDHFRVKKNMPKIGGFQSFNTARRTIAGFEAMLWLRKGFGFSGGWTVNDQNDLLARLFGLQKVNKA
>NZ_CP015623|119427:136216|134076_134328_+|WP_001445143.1|DBSCAN-SWA
MLRSQRRGRDPPCWLSEKEPLVGKRRVNFQRCWLPVSRIGLHRRGVERVNCGPKLLDLGEKGVYSSYTLSAAGQKGIRPCPSR
>NZ_CP015623|119427:136216|134610_135426_-|WP_001043260.1|DBSCAN-SWA
MNKSLIIFGIVNITSDSFSDGGRYLAPDAAIAQARKLMAEGADVIDLGPASSNPDAAPVSSDTEIARIAPVLDALKADGIPVSLDSYQPATQAYALSRGVAYLNDIRGFPDAAFYPQLAKSSAKLVVMHSVQDGQADRREAPAGDIMDHIAAFFDARIAALTGAGIKRNRLVLDPGMGFFLGAAPETSLSVLARFDELRLRFDLPVLLSVSRKSFLRALTGRGPGDVGAATLAAELAAAAGGADFIRTHEPRPLRDGLAVLAALKETARIR
>NZ_CP015623|119427:136216|123489_123891_+|WP_001183556.1|DBSCAN-SWA
MQQCHFKRYAKPRKPQDLLNHNCINVRYSDTSGLYAWEFEKDAQKFSLKVKGQYIANSTIHQLDAALDGLGIAYIPEYVADGYIKSGKLIAVLTEWCPYFDGYHIYYPHRRQDSPAFMAFLQVLRDRYNNGIR
>NZ_CP015623|119427:136216|124027_124843_-|WP_000018323.1|DBSCAN-SWA
MSHIQRETSCSRPRLNSNLDADLYGYRWARDNVGQSGATIYRLYGKPDAPELFLKHGKGSVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTAFQVLEEYPDSGENIVDALAAFLRRLHSIPVCNCPFNSDRAFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF
>NZ_CP015623|119427:136216|130411_130927_-|WP_066570481.1|DBSCAN-SWA
MKISLIVAMDREGGIGKNNDLMWHLPADMRFFRETTTGNIVVLGRKNYESIPERFRPLPNRENAVLTRNTSYAAPGCLLFHSLEECLEHYKNETDRTVFIIGGGEIYKQALNVVSEMYITHVDKSYDADTFFPQLNESEWKKEEVCQHPADEKHEAGFKIVKYTKNDSAID
>NZ_CP015623|119427:136216|124972_125677_+|WP_001067855.1|transposase|DBSCAN-SWA
MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
>NZ_CP015623|119427:136216|127650_128487_+|WP_000480968.1|DBSCAN-SWA
MFMPPVFPAHWHVSQPVLIADTFSSLVWKVSLPDGTPAIVKGLKPIEDIADELRGADYLVWRNGRGAVRLLGRENNLMLLEYAGERMLSHIVAEHGDYQATEIAAELMAKLYAASEEPLPSALLPIRDRFAALFQRARDDQNAGCQTDYVHAAIIADQMMSNASELRGLHGDLHHENIMFSSRGWLVIDPVGLVGEVGFGAANMFYDPADRDDLCLDPRRIAQMADAFSRALDVDPRRLLDQAYAYGCLSAAWNADGEEEQRDLAIAAAIKQVRQTSY
>NZ_CP015623|119427:136216|129564_129810_+|WP_074025659.1|DBSCAN-SWA
MLRSQRRGRDPPCWLSEKEPLVGKRRVNFQRCWLPVSRIGLHRRGVERVNCGPKLLDLGEKGVYSSYTSVSVCCFEIQRRR
>NZ_CP015623|119427:136216|131915_132308_+|WP_052928019.1|DBSCAN-SWA
MTKRLTERIAAQMQTQKPTRSGQNRAAFLAQRDDIKEALTDGWPVKAIWKTLHDEGKISFGYDAFISYVNSLIRSPGEPEKATARPPASSQPAPKKATPATPKPVPSASHKPGEIPSFNFNPSPNKADLI

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000602738.1|119427_120180_+|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	2.4e-41	44.7
WP_000742814.1|120601_121627_-	aminoglycoside O-phosphotransferase APH(4)-Ia	NA	NA	NA	NA
WP_001199192.1|121855_122632_-	aminoglycoside N-acetyltransferase AAC(3)-IVa	NA	NA	NA	NA
WP_001067855.1|122745_123450_+|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001183556.1|123489_123891_+	hypothetical protein	NA	NA	NA	NA
WP_000018323.1|124027_124843_-	APH(3')-I family aminoglycoside O-phosphotransferase	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	1.3e-160	98.2
WP_001067855.1|124972_125677_+|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_094078587.1|126242_126782_+	recombinase family protein	E5FFF9	Burkholderia_phage	6.9e-30	46.7
WP_001082319.1|126847_127651_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
WP_000480968.1|127650_128487_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_000898043.1|128610_129534_+|transposase	IS91-like element ISVsa3 family transposase	NA	NA	NA	NA
WP_074025659.1|129564_129810_+	hypothetical protein	NA	NA	NA	NA
WP_066570478.1|129739_130357_+	DUF4159 domain-containing protein	NA	NA	NA	NA
WP_066570481.1|130411_130927_-	dihydrofolate reductase	U5J9P6	Bacillus_phage	2.8e-33	45.9
WP_052928019.1|131915_132308_+	hypothetical protein	NA	NA	NA	NA
WP_001120888.1|132552_134046_+|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001445143.1|134076_134328_+	hypothetical protein	NA	NA	NA	NA
WP_000251875.1|134221_134524_-	phosphoglucosamine mutase	NA	NA	NA	NA
WP_001043260.1|134610_135426_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_066570492.1|135505_136216_+|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	4.4e-77	58.5

3. NZ_CP015624

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015624_1

• CRISPR_ID: NZ_CP015624_1
• CRISPR_location: 17583-17660
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP015624_1

Consensus_repeat	Method
TCTAGGTATCAGACATCTAGGTAT	CRISPRCasFinder

spacers of NZ_CP015624_1

>1.1|17607|30|NZ_CP015624|CRISPRCasFinder
CAGACGTCTAGGTATTAAGACTTCTTTCCG

CRISPR arrays and Neighbor proteins around NZ_CP015624_1

CRISPR arrays

The CRISPR arrays of NZ_CP015624_1

>merge|NZ_CP015624|1|17583-17660|CRISPRCasFinder
TCTAGGTATCAGACATCTAGGTATCAGACGTCTAGGTATTAAGACTTCTTTCCGTCTAGGTATCAGACGTCTAGGTAT

>NZ_CP015624|1|1|17583-17660|CRISPRCasFinder
TCTAGGTATCAGACATCTAGGTAT	CAGACGTCTAGGTATTAAGACTTCTTTCCG
TCTAGGTATCAGACGTCTAGGTAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015624.1|WP_001082319.1|10172_10976_+|aminoglycoside-O-phosphotransferase-APH(3'')-Ib	unknown	unknown	gnl|CDD|270699
NZ_CP015624.1|WP_066570511.1|12010_14569_+|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl|CDD|214947
NZ_CP015624.1|WP_011091138.1|23122_23368_+|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|238045
NZ_CP015624.1|WP_066570507.1|3649_5278_+|restriction-endonuclease	unknown	unknown	gnl|CDD|369456
NZ_CP015624.1|WP_066570543.1|3005_3653_+|N-6-DNA-methylase	unknown	unknown	gnl|CDD|280533
NZ_CP015624.1|WP_010991835.1|23753_25157_-|IS1380-like-element-IS1677-family-transposase	unknown	unknown	gnl|CDD|379340
NZ_CP015624.1|WP_000480968.1|10975_11812_+|aminoglycoside-O-phosphotransferase-APH(6)-Id	unknown	unknown	gnl|CDD|309685
NZ_CP015624.1|WP_066570535.1|22746_23022_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015624.1|WP_010991831.1|1748_2780_-|recombinase-family-protein	unknown	unknown	gnl|CDD|239737
NZ_CP015624.1|WP_000904906.1|8257_8872_+|recombinase-family-protein	unknown	unknown	gnl|CDD|239737
NZ_CP015624.1|WP_010889961.1|17880_18459_-|ParA-family-protein	unknown	unknown	gnl|CDD|349760
NZ_CP015624.1|WP_010889960.1|15813_17262_-|replicase-RepA	unknown	unknown	gnl|CDD|376986
NZ_CP015624.1|WP_001138082.1|5246_8132_-|Tn3-family-transposase	unknown	unknown	gnl|CDD|376561
NZ_CP015624.1|WP_085959879.1|8936_10066_+|IS3-like-element-IS1133-family-transposase	unknown	unknown	gnl|CDD|222853
NZ_CP015624.1|WP_066570514.1|18704_22199_-|relaxase-domain-containing-protein	unknown	unknown	gnl|CDD|378042

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP015624.1|WP_001082319.1|10172_10976_+|aminoglycoside-O-phosphotransferase-APH(3'')-Ib	gnl|CDD|270699	cd05150, APH, Aminoglycoside 3'-phosphotransferase. APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibiotics. The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	7.00405e-89
NZ_CP015624.1|WP_066570511.1|12010_14569_+|DEAD/DEAH-box-helicase-family-protein	gnl|CDD|214947	smart00974, T5orf172, This entry represents the putative helicase A859L.	2.06446e-05
NZ_CP015624.1|WP_011091138.1|23122_23368_+|helix-turn-helix-transcriptional-regulator	gnl|CDD|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	5.14841e-14
NZ_CP015624.1|WP_066570507.1|3649_5278_+|restriction-endonuclease	gnl|CDD|369456	pfam07669, Eco57I, Eco57I restriction-modification methylase. homologs of the Escherichia coli Eco57I restriction-modification methylase are found in several phylogenetically diverse bacteria. The structure of TaqI has been solved.	2.36665e-46
NZ_CP015624.1|WP_066570543.1|3005_3653_+|N-6-DNA-methylase	gnl|CDD|280533	pfam02384, N6_Mtase, N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.	5.48068e-05
NZ_CP015624.1|WP_010991835.1|23753_25157_-|IS1380-like-element-IS1677-family-transposase	gnl|CDD|379340	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	9.11894e-19
NZ_CP015624.1|WP_000480968.1|10975_11812_+|aminoglycoside-O-phosphotransferase-APH(6)-Id	gnl|CDD|309685	pfam04655, APH_6_hur, Aminoglycoside/hydroxyurea antibiotic resistance kinase. The aminoglycoside phosphotransferases achieve inactivation of their antibiotic substrates by phosphorylation utilising ATP. Likewise hydroxyurea is inactivated by phosphorylation of the hydroxy group in the hydroxylamine moiety.	6.73238e-118
NZ_CP015624.1|WP_010991831.1|1748_2780_-|recombinase-family-protein	gnl|CDD|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	6.7635e-45
NZ_CP015624.1|WP_000904906.1|8257_8872_+|recombinase-family-protein	gnl|CDD|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	2.16971e-53
NZ_CP015624.1|WP_010889961.1|17880_18459_-|ParA-family-protein	gnl|CDD|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	2.71244e-34
NZ_CP015624.1|WP_010889960.1|15813_17262_-|replicase-RepA	gnl|CDD|376986	pfam03090, Replicase, Replicase family. This is a family of bacterial plasmid DNA replication initiator proteins. pfam01051 is a similar family. These RepA proteins exist as monomers and dimers in equilibrium: monomers bind directly to repeated DNA sequences and thus activate replication; dimers repress repA transcription by binding an inversely repeated DNA operator. Dimer dissociation can occur spontaneously or be mediated by Hsp70 chaperones.	8.2976e-39
NZ_CP015624.1|WP_001138082.1|5246_8132_-|Tn3-family-transposase	gnl|CDD|376561	pfam01526, DDE_Tnp_Tn3, Tn3 transposase DDE domain. This family includes transposases of Tn3, Tn21, Tn1721, Tn2501, Tn3926 transposons from E-coli. The specific binding of the Tn3 transposase to DNA has been demonstrated. Sequence analysis has suggested that the invariant triad of Asp689, Asp765, Glu895 (numbering as in Tn3) may correspond to the D-D-35-E motif previously implicated in the catalysis of numerous transposases.	3.11811e-174
NZ_CP015624.1|WP_085959879.1|8936_10066_+|IS3-like-element-IS1133-family-transposase	gnl|CDD|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	9.14029e-71
NZ_CP015624.1|WP_066570514.1|18704_22199_-|relaxase-domain-containing-protein	gnl|CDD|378042	pfam08751, TrwC, TrwC relaxase. Relaxases are DNA strand transferases which function during the conjugative cell to cell DNA transfer. TrwC binds to the origin of transfer (oriT) and melts the double helix.	4.29979e-66

Protein sequences

>NZ_CP015624.1|WP_010889960.1|15813_17262_-|replicase-RepA
MSLPNDYAAGTTRHAEVPSFTGDLDDTPAGYTDRDALLSHLGRQVLHGSRGRDFASAYITTKDGTRAPRMYRVDSDALEKCEYVQLTNKQYASVLVVDIDLPGTAGGHPVNLNDEVKEKFSQLISRHLGPAWVGINPVNGKCQALWLIDPIYADVGGQSPHMALLAAATHTLGQWLGHDSHFAHRFSRSPFYTGDSPTAYRWYRQNHAVRRVGDLLKDLRTMTGQEQYSKPRQQFSSGRELINAVKSRREEAQRFKALSEGVEAELAGELDQYDPELTQGVRVLWIRAGRAARDETAFRHALKTGYRLRQSGQRLTDAAIIDAYERAYGVAQEVGADGRKAELPPMRDRQTMARRVRGYVTTSKSEVHGGSSVSGQVTSSERKALATMGRRGGKKAAERWKDPNSDYATELRTKLQGANERRALTGRVTARQIANFFDDTFIQTGEYPSIPQAMNELGVSRPTISRALKTAGIQLPRGRKKK
>NZ_CP015624.1|WP_066570511.1|12010_14569_+|DEAD/DEAH-box-helicase-family-protein
MSKEIDELLPAKPSARLRIYAWTPNDPPVDYVGLIKIGQTTKSDVNERIRESQGQMQQTYTLHIDEPAERDDGTLFRDSDVRQRLIAKGFENPIFGSAREWMRCTPDDVRTAITELHTGTKLTGTHHETFTMRPEQAQAVEKTRQYYESIWAEDPQTVPRFLWNAKMRFGKTFASYQLAKRMNASRILVVTFKPAVEDAWQTDLESHSDFEGWQYISSSTGGDPDAADRSRPLVYFGSFQDLLGRNKKTGMIKPKNEWVHTTNWDLVIFDEYHFGAWRESAKELFEGEDEKVAKKEIAAEYHEDLAAFEEELDELGNSENDFLPITTRSYLYLSGTPFKALSTGEFIEEQIFNWTYTDEQRAKADYATTHPGKWNPYGALPEMRLFTYQMPDELIAVANQGEFDEFDLNAFFEATGTGKDATFKRKTDVQKWLDIIRGAYMPTQVDAMRMGTRPPFPYSDSRLLPYLQHSFWFLPTVASCEAMANLLAERQNIFWHDYQVLSVAGSHAGIGLEALPPVRAAIREGHDTKSITLSCGKLTTGVTVKQWSSILMLRNLNSPETYFQAAFRVQSPWSIKNPNGDNPNEEEVIKPACFVFDFAPTRALRQISDYGVGLSPEAQNPEHAVEELVKFLPVLAYDGSNMTQVNAGGILDIAMAGTSATLLARKWESAILVNVDNDTLRRIMGSQEAMDAVMNIEGFRALGSAVFETVINKSESVKATKKEKGESLTVKEKKELSTEEKEYKSKRKQIQEKLIKFATRIPAFMYLTDFREHTLQDVITKLEPDLFKAVTGLSVADFHLLVELGVFNATHMNQAVFAFRRYEDSSLSYTGIASHKGLRHYGLYDTVIAVEE
>NZ_CP015624.1|WP_000480968.1|10975_11812_+|aminoglycoside-O-phosphotransferase-APH(6)-Id
MFMPPVFPAHWHVSQPVLIADTFSSLVWKVSLPDGTPAIVKGLKPIEDIADELRGADYLVWRNGRGAVRLLGRENNLMLLEYAGERMLSHIVAEHGDYQATEIAAELMAKLYAASEEPLPSALLPIRDRFAALFQRARDDQNAGCQTDYVHAAIIADQMMSNASELRGLHGDLHHENIMFSSRGWLVIDPVGLVGEVGFGAANMFYDPADRDDLCLDPRRIAQMADAFSRALDVDPRRLLDQAYAYGCLSAAWNADGEEEQRDLAIAAAIKQVRQTSY
>NZ_CP015624.1|WP_001082319.1|10172_10976_+|aminoglycoside-O-phosphotransferase-APH(3'')-Ib
MNRTNIFFGESHSDWLPVRGGESGDFVFRRGDGHAFAKIAPASRRGELAGERDRLIWLKGRGVACPEVINWQEEQEGACLVITAIPGVPAADLSGADLLKAWPSMGQQLGAVHSLSVDQCPFERRLSRMFGRAVDVVSRNAVNPDFLPDEDKSTPQLDLLARVERELPVRLDQERTDMVVCHGDPCMPNFMVDPKTLQCTGLIDLGRLGTADRYADLALMIANAEENWAAPDEAERAFAVLFNVLGIEAPDRERLAFYLRLDPLTWG
>NZ_CP015624.1|WP_085959879.1|8936_10066_+|IS3-like-element-IS1133-family-transposase
MSLKHSDEFKRDAVRIALTSGLTRRQVASDLSIGLSTLGKWIASISDETKIPTQDTDLLRENERLRKENRILREEREILKKAGNIFRSTKAVRFQFITDYRGSLSRSRICRLMGVTDRGLRAWKRRPPSLRQRRDLILLAHIREQHRLCLGSYGRPRMTEELKALGLQVGQRRVGRLMRQNNITVVRTRKFKRTTDSHHTFNIAPNLLKQDFSASAPNQKWAGDITYVWTREGWVYLAVILDLYSRRVIGWATGDRLKQDLALRALNMALALRKPPPGCIQHTDRGSQYCAHEYQKLLLKHQLLPSMSGKGNCFDNSAVESFFKSLKAELIWRRHWQTRRDIEIAIFEYINGFYNPRRRHSTLGWKSPVAFEKKAA
>NZ_CP015624.1|WP_000904906.1|8257_8872_+|recombinase-family-protein
MLIGYARVSKADGSQSLDLQHDALRAAGVERDNIYDDLASGGRDDRPGLTACLKSLRDGDVLVVWKLDRLGRSLAHLVNTVKELSDRKIGLRVLTGKGAQIDTTTASGRMVFGIFATLAEFERDLIRERTMAGLASARARGRKGGRKFALTKAQVRLAQAAMAQRDTSVSDLCKELGIERVTLYRYVGPKGELRDHGKHVLGLT
>NZ_CP015624.1|WP_001138082.1|5246_8132_-|Tn3-family-transposase
MPRRVTLTDRQKDALLRLPTSQTDLLKHYTLSDEDLGHIRLRRRAHNRFGFALQLCVLRYPGRVLAPGELIPAEVIEFIGAQLGLGADDLVDYAAREETRHEHLAELRGLYGFRTFSGRGASELKEWLFREAEMAVSNEDIARRFVAECRRTRTVLPATSTIERLCAAALVDAERRIETRIASRLPMSIREQLLALLEETADDRVTRFVWLRQFEPGSNSSSANRLLDRLEYLQRIDLPEDLLAGVPAHRVTRLRRQGERYYADGMRDLPEDRRLAILAVCVSEWQAMLADAVVETHDRIVGRLYRASERICHAKVADEAGVVRDTLKSFAEIGGALVDAQDDGQPLGDVIASGSGWDGLKTLVAMATRLTATMADDPLNHVLDGYHRFRRYAPRMLRLLDLRAAPVALPLLEAVTALRTGLNDAAMTSFLRPSSKWHRHLRAQRAGDARLWEIAVLFHLRDAFRSGDVWLTRSRRYGDLKHALVPAQSIAEGGRLAVPLRPEEWLADRQARLDMRLRELGRAARAGTIPGGSIENGVLHIEKLEAAAPTGAEDLVLDLYKQIPPTRITDLLLEVDAATGFTEAFTHLRTGAPCADRIGLMNVILAEGINLGLRKMADATNTHTFWELIRIGRWHVEGEAYDRALAMVVEAQAALPMARFWGMGTSASSDGQFFVATEQGEAMNLVNAKYGNTPGLKAYSHVSDQYAPFATQVIPATASEAPYILDGLLMNDAGRHIREQFTDTGGFTDHVFAACAILGYRFAPRIRDLPSKRLYAFNPSAAPAHLRALIGGKVNQAMIERNWPDILRIAATIAAGTVAPSQILRKLASYPRQNELATALREVGRVERTLFMIDWILDAELQRRAQIGLNKGEAHHALKRAISFHRRGEIRDRSAEGQHYRIAGMNLLAAIIIFWNTMKLGEVVANQKRDGKLLSPDLLAHVSPLGWEHINLTGEYRWPKP
>NZ_CP015624.1|WP_066570507.1|3649_5278_+|restriction-endonuclease
MSQASFTLRGHNPDVLTCIANLSNDEVFTPPEMANAMLDLLAAAWADTHEGADIWANPNVSFLDPFTKSGVFLREITRRLTDGLALAIPDLTERVDHILTRQVYGIGITQLTALLARRSVYCSKYANGPHSIAQSFTTEDGNIWFERTEHTWAGGTREIHSNPRTGAKTVVYTRRKCRYCSANEDDYGRGDELETHAYAFIHTDDIKTRITELFGENMHFDVIIGNPPYQLSDGGHGSSAAPIYQMFVEKALSLDPRFAVFVTPSRWFAGGKGLDEYRKKMLSDHRMRNIVDYPKLYEAFPGVKIRGGVSYFLWDRDYNGPCTMQTMWDGEPVGEPVARYLDAYDVLVRRNEAVPILEKVRSKQEATLDGRVSSRKPFGLPTNFKGKTSPARIVDPVKLFANQRIDWIDRSELLANDAWVDDWKVLMTRVQGTSAAVETKFLSKPILAGPGTACTETYLVAGRFATEQEANRYAMYLRTRFVRFLVSLRKSTQDAPRHVYTFVPDVPLDRDWTDALLYERYGGRLREGAESYAKALASDILR
>NZ_CP015624.1|WP_066570543.1|3005_3653_+|N-6-DNA-methylase
MHEMERLVKSKQRVADHGEVFTPSWMVEDMLNLLQNESQRIDSRVLEPACGSGNFLVPVLARKFSTVQDRHGKSDFEKRNFALFALMCTYGIELLADNTQECRSNLAELFNTFLDIDENDEWAKAARVVLAANIIQGDGLTMTEPNGLPITFAEWGYLGKGKFQRRDFQYNNLTARTTWEAEGSLFQDLAHDLFAPSRTYPTMTAQEIAKQVLSK
>NZ_CP015624.1|WP_010991831.1|1748_2780_-|recombinase-family-protein
MTRYGTLLGLHGKPKDRVIIVRRGSKTTRVKFPHKDRPGFNLEEVKVDASTVLDDGGELWEKYQRMPNTATWRSFGGEPQGHLHVQRVYKNVIKASIYEGNGQWSRIDDFHPEQVLFDAGEAWPKSKTDQLLNDTDVVPASEETTTPTPKTTDLGQRVGYVRVSSADQNLARQREAIGAVDREFVDELSARARAQRPGLEECIAYLRNHDELVVASIDRLARSLVDLRTIIDQITAKGASVRFIKEGLVFSATDQDPRATLMLGILGSFAEFERSIIRERQAEGIALAKKAGKYSGRKKALSPAQVKQARDRIDAGESKTAVAQDLGVGRATLYRYLMSDNKR
>NZ_CP015624.1|WP_010889961.1|17880_18459_-|ParA-family-protein
MIIGIINSKGGVGKTTTTINLATVFANQGKDVAVLDLDPQGSASDWADRAADAGTPLPFLVEATNIKRLPRVAGIHEFTIIDTPPGDPAIMDATIAVSDFVIVPVQSSPIELVRVGETLPSLTNTPHGVLITSARFGTRQLEETVEGLEEQGISTFDTKIPIREGIRSAFGTVPTKFEGYDFLAQEIMEAMS
>NZ_CP015624.1|WP_066570514.1|18704_22199_-|relaxase-domain-containing-protein
MLTIAKMHGDSVAYYESTVATFDDRISSPDDYYSEDGTQPATAWIQARTEAQATTVATALGVKNGVQVDGADVGQWFNHALAPSGHKLGRAPKSSGVPGFDLTFCAPKSVSLIWGLTNDMDVRSTVDLAHHRAVTTALSYLSEHAGYTRRADDHDRSMMIIDRVEALSGVRYEHRTSRAGDPHLHAHVLLANKQLCRDGKWRTLDGVGLYHEARAAGTIYQAVLREELSRTLGVEWADTVHGCAEIIGLDDRGLIEDFSTRAREIDQWAADNGVGSDAAFERMGQKKTRQVKDLDTPLSELEQNWKARVAETSAPKFVEALSPHSHSPQPVALPTVDEVLEAVTRERSTFTRADVVEAATELLPVGAVTAKEIYDTVERLADQVCGGHVAWTVTPDKDRQVDRSAREGSQRFTSEAVVEEVNRGIDLATTVTGRGVSSSMITPVEGQLSADQAEAMRAVVSSRYLASVVIAPAGAGKTSSLKAARTAWEQAGKQVIGLAPTGKAADVMVGEDVAHSSSTLARVLRGVEDQEVEQAVATLGWTTDHVIVVDEAGMVSTPEMVRILELAQAADARVVLVGDPYQYGAVKARGGLLATLAHEMPDAVELREVFRQHDEKERVASKRLRTGVLPDVERAADFYAGAGRLHAGSVTAMLDDALAGWREDVAAGKDSLLVASTHDYVDALNRAAQQTMIAAGVVDAAEAIAVSSGQYAHVGDTILTRRNDYELTTSSGDVVRNGQRWQVETIDGDGFVLARRLDDTAATVRLHPAYLAEHVQLGYASTGHAAQGATVDVARVVAGVGQIDRAGVYVPLTRGREANYLYMAESMPGDSETGHGVVTATQRRESAQYARDLLVQAATRSHSDHSPHEVHRQARLDWGLSRLSSNVPTSESPFRGTRMAQVADQRAAQRLERVQEFYATTNATVHAKQAAKEAAQQRRSRKCTDTSASTSGVDQPFSADYLSMSPEELSEVMQKQIHESAQRKKTPHEEERARLTAKIEHFEQEVSDLRAQVSELELARRDAERELSQANVRMNDLDNRIYAKEVEREQRGFLAKAFKPREGLEQIEQLMIERDQQQIYRDQCEHKVADVKADLDQARTAYQAAQDKHVDAVQELSSVNLNPLLLHDGELNLAESHHDDTAADDYDHTSGWEHSSRNDNGMDL
>NZ_CP015624.1|WP_066570535.1|22746_23022_-|hypothetical-protein
MSPLDPTTNNRYIPRTPGPASDVAQSPSQEATHPTITPGQIAEWEPPAVVKLTTQITVEHRKLLHRLERQTGTSLWKLIGHAIEEMYGSKH
>NZ_CP015624.1|WP_011091138.1|23122_23368_+|helix-turn-helix-transcriptional-regulator
MTPDKKILIQLGGRIRDVRKGLGISQEELAHLSGMHRTYVSSVERGERNISVLNLLSLAGVLGVDAGDLVTGLTRAPRIKP
>NZ_CP015624.1|WP_010991835.1|23753_25157_-|IS1380-like-element-IS1677-family-transposase
MQLLHNPTAMSASFDDPNLISLAGLVPTMHLADAASLSTLAQDRLSITGDKGANAGAKIASLVAGMVAGADSIDDMDVLRHGGMRRLFDRIYAPSTLGSFLRAFTFGHVRQLDAVASRFLVNLARQAPHLVPPPPAGSGGNGYVFVDVDDTIIEVHGHTKQGAGFGYSGIRGLNALLATVTTAQSAPIIVGQRLRKGSCGSPRGAHRLIADAMTTTRRLPGMEDKKILVRADSAYYGHPSVSVALRSGADVSVTVRMTPNVKKAIVAIPEDAWQTIQYTDAIFDEASQSWISLAQVAEVPFTAFTSRKKADHVPGRLVVRRIPELNKKDVYQPGLFDLHRFHAVFTTADPGVLDTVAADKTHRQHAIIEQVNADLKASALAHLPSGTFTANSAWLVCAVMAFNLTRATGVIAAGGMAKATTATIRRTLMAVPARVARRSRRLVLHLPEGWTWQPQWQKLFDHGHSPP

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP015624_1	1.1|17607|30|NZ_CP015624|CRISPRCasFinder	17607-17636	30	NZ_CP015624.1	17646-17675	0	1.0

1. spacer 1.1|17607|30|NZ_CP015624|CRISPRCasFinder matches to position: 17646-17675, mismatch: 0, identity: 1.0

cagacgtctaggtattaagacttctttccg	CRISPR spacer
cagacgtctaggtattaagacttctttccg	Protospacer
******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP015624_1	1.1|17607|30|NZ_CP015624|CRISPRCasFinder	17607-17636	30	NC_001415	Corynebacterium glutamicum strain 22243 R-plasmid pAG1, complete sequence	7833-7862	0	1.0
NZ_CP015624_1	1.1|17607|30|NZ_CP015624|CRISPRCasFinder	17607-17636	30	NZ_CP015624	Corynebacterium crudilactis strain JZ16 plasmid pCRULAC2, complete sequence	17607-17636	0	1.0
NZ_CP015624_1	1.1|17607|30|NZ_CP015624|CRISPRCasFinder	17607-17636	30	NZ_CP015624	Corynebacterium crudilactis strain JZ16 plasmid pCRULAC2, complete sequence	17646-17675	0	1.0
NZ_CP015624_1	1.1|17607|30|NZ_CP015624|CRISPRCasFinder	17607-17636	30	NZ_CP009221	Corynebacterium deserti GIMN1.010 plasmid pCdes1, complete sequence	20968-20997	1	0.967
NZ_CP015624_1	1.1|17607|30|NZ_CP015624|CRISPRCasFinder	17607-17636	30	NC_004945	Corynebacterium glutamicum strain ATCC31830 R-plasmid pCG4, complete sequence	9062-9091	1	0.967

1. spacer 1.1|17607|30|NZ_CP015624|CRISPRCasFinder matches to NC_001415 (Corynebacterium glutamicum strain 22243 R-plasmid pAG1, complete sequence) position: , mismatch: 0, identity: 1.0

cagacgtctaggtattaagacttctttccg	CRISPR spacer
cagacgtctaggtattaagacttctttccg	Protospacer
******************************

2. spacer 1.1|17607|30|NZ_CP015624|CRISPRCasFinder matches to NZ_CP015624 (Corynebacterium crudilactis strain JZ16 plasmid pCRULAC2, complete sequence) position: , mismatch: 0, identity: 1.0

cagacgtctaggtattaagacttctttccg	CRISPR spacer
cagacgtctaggtattaagacttctttccg	Protospacer
******************************

3. spacer 1.1|17607|30|NZ_CP015624|CRISPRCasFinder matches to NZ_CP015624 (Corynebacterium crudilactis strain JZ16 plasmid pCRULAC2, complete sequence) position: , mismatch: 0, identity: 1.0

cagacgtctaggtattaagacttctttccg	CRISPR spacer
cagacgtctaggtattaagacttctttccg	Protospacer
******************************

4. spacer 1.1|17607|30|NZ_CP015624|CRISPRCasFinder matches to NZ_CP009221 (Corynebacterium deserti GIMN1.010 plasmid pCdes1, complete sequence) position: , mismatch: 1, identity: 0.967

cagacgtctaggtattaagacttctttccg	CRISPR spacer
cagacgtctaggtattaagacttctttcca	Protospacer
*****************************.

5. spacer 1.1|17607|30|NZ_CP015624|CRISPRCasFinder matches to NC_004945 (Corynebacterium glutamicum strain ATCC31830 R-plasmid pCG4, complete sequence) position: , mismatch: 1, identity: 0.967

cagacgtctaggtattaagacttctttccg	CRISPR spacer
cagacgtctaggtattaagacttctttcca	Protospacer
*****************************.