CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015577	Campylobacter iguaniorum strain RM11343 chromosome, complete genome	4 crisprs	DEDDh,cas3,csa3	3	1	0	0

1. NZ_CP015577

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015577_1

• CRISPR_ID: NZ_CP015577_1
• CRISPR_location: 552511-553395
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 13 spacers

Consensus repeat of NZ_CP015577_1

Consensus_repeat	Method
GTATAAATTTATCCTTGTAGGATTTAAAAC	PILER-CR
GTATAAATTTATCCTTGTAGGATTTAAAAC	CRISPRCasFinder
GTATAAATTTATCCTTGTAGGATTTAAAAC	CRT

spacers of NZ_CP015577_1

>1.1|552541|39|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT
TGTTTGGGAGACGAGTATCGATGAGAGGGTATCAACTGG
>1.2|552610|36|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT
TTATCATTCCAATTTACCTTAACTACATAAGCATTA
>1.3|552676|36|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT
TTATCATTCCAATTTACCTTAACTACATAAGCATTA
>1.4|552742|38|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT
TTTAAGCTGAGCGATATAAATGCACTTAAAGATGAAAT
>1.5|552810|38|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT
TTTAAGCTGAGCGATATAAATGCACTTAAAGATGAAAT
>1.6|552878|34|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT
AGGCTAAATTCTATATTTTGCTTTTTCAGTCCTG
>1.7|552942|36|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT
CGCCGTTATAGTAAGTTTCTATTGTTCCGCCATATT
>1.8|553008|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT
AGTAATAACGCTCAAATGATAGGTATTACAACTGG
>1.9|553073|36|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT
CTTGTTATGGATTACTAAACAATCCCTCATTAAGCA
>1.10|553139|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT
GCATTTCTTACTTTTCTAGCTATAATCTCTATAAT
>1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT
TTCCTTTATTTTTTACACTCGTTAAATTCTTCTAA
>1.12|553269|33|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT
AAAATCTTGCTGTAATTTTTCTTGAAAATCCAC
>1.13|553332|34|NZ_CP015577|CRISPRCasFinder,CRT
AAATTTAATGCTTGGCTAATTTCGTATTGAGTAA

CRISPR arrays and Neighbor proteins around NZ_CP015577_1

CRISPR arrays

The CRISPR arrays of NZ_CP015577_1

>merge|NZ_CP015577|1|552511-553395|PILER-CR,CRISPRCasFinder,CRT
GTATAAATTTATCCTTGTAGGATTTAAAACTGTTTGGGAGACGAGTATCGATGAGAGGGTATCAACTGGGTATAAATTTATCCTTGTAGGATTTAAAACTTATCATTCCAATTTACCTTAACTACATAAGCATTAGTATAAATTTATCCTTGTAGGATTTAAAACTTATCATTCCAATTTACCTTAACTACATAAGCATTAGTATAAATTTATCCTTGTAGGATTTAAAACTTTAAGCTGAGCGATATAAATGCACTTAAAGATGAAATGTATAAATTTATCCTTGTAGGATTTAAAACTTTAAGCTGAGCGATATAAATGCACTTAAAGATGAAATGTATAAATTTATCCTTGTAGGATTTAAAACAGGCTAAATTCTATATTTTGCTTTTTCAGTCCTGTAATAAATTTATCCTTGTAGGATTTAAAACCGCCGTTATAGTAAGTTTCTATTGTTCCGCCATATTGTATAAATTTATCCTTGTAGGATTTAAAACAGTAATAACGCTCAAATGATAGGTATTACAACTGGGTATAAATTTATCCTTGTAGGATTTAAAACCTTGTTATGGATTACTAAACAATCCCTCATTAAGCAGTATAAATTTATCCTTGTAGGATTTAAAACGCATTTCTTACTTTTCTAGCTATAATCTCTATAATGTATAAATTTATCCTTGTAGGATTTAAAACTTCCTTTATTTTTTACACTCGTTAAATTCTTCTAAGTATAAATTTATCCTTGTAGGATTTAAAACAAAATCTTGCTGTAATTTTTCTTGAAAATCCACGTATAAATTTATCCTTGTAGGATTTAAAACAAATTTAATGCTTGGCTAATTTCGTATTGAGTAAGTATAAATTTATCCTTGTAGTTTTTAAGAT

>NZ_CP015577|1|1|552511-553331|PILER-CR
GTATAAATTTATCCTTGTAGGATTTAAAAC	TGTTTGGGAGACGAGTATCGATGAGAGGGTATCAACTGG
GTATAAATTTATCCTTGTAGGATTTAAAAC	TTATCATTCCAATTTACCTTAACTACATAAGCATTA
GTATAAATTTATCCTTGTAGGATTTAAAAC	TTATCATTCCAATTTACCTTAACTACATAAGCATTA
GTATAAATTTATCCTTGTAGGATTTAAAAC	TTTAAGCTGAGCGATATAAATGCACTTAAAGATGAAAT
GTATAAATTTATCCTTGTAGGATTTAAAAC	TTTAAGCTGAGCGATATAAATGCACTTAAAGATGAAAT
GTATAAATTTATCCTTGTAGGATTTAAAAC	AGGCTAAATTCTATATTTTGCTTTTTCAGTCCTG
TAATAAATTTATCCTTGTAGGATTTAAAAC	CGCCGTTATAGTAAGTTTCTATTGTTCCGCCATATT
GTATAAATTTATCCTTGTAGGATTTAAAAC	AGTAATAACGCTCAAATGATAGGTATTACAACTGG
GTATAAATTTATCCTTGTAGGATTTAAAAC	CTTGTTATGGATTACTAAACAATCCCTCATTAAGCA
GTATAAATTTATCCTTGTAGGATTTAAAAC	GCATTTCTTACTTTTCTAGCTATAATCTCTATAAT
GTATAAATTTATCCTTGTAGGATTTAAAAC	TTCCTTTATTTTTTACACTCGTTAAATTCTTCTAA
GTATAAATTTATCCTTGTAGGATTTAAAAC	AAAATCTTGCTGTAATTTTTCTTGAAAATCCAC
GTATAAATTTATCCTTGTAGGATTTAAAAC

>NZ_CP015577|1|1|552511-553395|CRISPRCasFinder
GTATAAATTTATCCTTGTAGGATTTAAAAC	TGTTTGGGAGACGAGTATCGATGAGAGGGTATCAACTGG
GTATAAATTTATCCTTGTAGGATTTAAAAC	TTATCATTCCAATTTACCTTAACTACATAAGCATTA
GTATAAATTTATCCTTGTAGGATTTAAAAC	TTATCATTCCAATTTACCTTAACTACATAAGCATTA
GTATAAATTTATCCTTGTAGGATTTAAAAC	TTTAAGCTGAGCGATATAAATGCACTTAAAGATGAAAT
GTATAAATTTATCCTTGTAGGATTTAAAAC	TTTAAGCTGAGCGATATAAATGCACTTAAAGATGAAAT
GTATAAATTTATCCTTGTAGGATTTAAAAC	AGGCTAAATTCTATATTTTGCTTTTTCAGTCCTG
TAATAAATTTATCCTTGTAGGATTTAAAAC	CGCCGTTATAGTAAGTTTCTATTGTTCCGCCATATT
GTATAAATTTATCCTTGTAGGATTTAAAAC	AGTAATAACGCTCAAATGATAGGTATTACAACTGG
GTATAAATTTATCCTTGTAGGATTTAAAAC	CTTGTTATGGATTACTAAACAATCCCTCATTAAGCA
GTATAAATTTATCCTTGTAGGATTTAAAAC	GCATTTCTTACTTTTCTAGCTATAATCTCTATAAT
GTATAAATTTATCCTTGTAGGATTTAAAAC	TTCCTTTATTTTTTACACTCGTTAAATTCTTCTAA
GTATAAATTTATCCTTGTAGGATTTAAAAC	AAAATCTTGCTGTAATTTTTCTTGAAAATCCAC
GTATAAATTTATCCTTGTAGGATTTAAAAC	AAATTTAATGCTTGGCTAATTTCGTATTGAGTAA
GTATAAATTTATCCTTGTAGTTTTTAAGAT

>NZ_CP015577|1|1|552511-553395|CRT
GTATAAATTTATCCTTGTAGGATTTAAAAC	TGTTTGGGAGACGAGTATCGATGAGAGGGTATCAACTGG
GTATAAATTTATCCTTGTAGGATTTAAAAC	TTATCATTCCAATTTACCTTAACTACATAAGCATTA
GTATAAATTTATCCTTGTAGGATTTAAAAC	TTATCATTCCAATTTACCTTAACTACATAAGCATTA
GTATAAATTTATCCTTGTAGGATTTAAAAC	TTTAAGCTGAGCGATATAAATGCACTTAAAGATGAAAT
GTATAAATTTATCCTTGTAGGATTTAAAAC	TTTAAGCTGAGCGATATAAATGCACTTAAAGATGAAAT
GTATAAATTTATCCTTGTAGGATTTAAAAC	AGGCTAAATTCTATATTTTGCTTTTTCAGTCCTG
TAATAAATTTATCCTTGTAGGATTTAAAAC	CGCCGTTATAGTAAGTTTCTATTGTTCCGCCATATT
GTATAAATTTATCCTTGTAGGATTTAAAAC	AGTAATAACGCTCAAATGATAGGTATTACAACTGG
GTATAAATTTATCCTTGTAGGATTTAAAAC	CTTGTTATGGATTACTAAACAATCCCTCATTAAGCA
GTATAAATTTATCCTTGTAGGATTTAAAAC	GCATTTCTTACTTTTCTAGCTATAATCTCTATAAT
GTATAAATTTATCCTTGTAGGATTTAAAAC	TTCCTTTATTTTTTACACTCGTTAAATTCTTCTAA
GTATAAATTTATCCTTGTAGGATTTAAAAC	AAAATCTTGCTGTAATTTTTCTTGAAAATCCAC
GTATAAATTTATCCTTGTAGGATTTAAAAC	AAATTTAATGCTTGGCTAATTTCGTATTGAGTAA
GTATAAATTTATCCTTGTAGTTTTTAAGAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015577.1|WP_063999473.1|541939_542701_-|glutamate-racemase	unknown	unknown	gnl|CDD|234851
NZ_CP015577.1|WP_145914709.1|537944_539060_-|DUF262-domain-containing-protein	unknown	unknown	gnl|CDD|377008
NZ_CP015577.1|WP_063999482.1|557667_558423_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015577.1|WP_082858162.1|540423_541698_+|selenium-metabolism-membrane-protein-YedE/FdhT	unknown	unknown	gnl|CDD|236845
NZ_CP015577.1|WP_064000335.1|551862_552267_+|helix-hairpin-helix-domain-containing-protein	unknown	unknown	gnl|CDD|378965
NZ_CP015577.1|WP_063999478.1|555133_555490_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015577.1|WP_158509965.1|557348_557516_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015577.1|WP_063999480.1|556288_556468_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015577.1|WP_082858161.1|536983_537547_+|hypothetical-protein	unknown	unknown	gnl|CDD|373322
NZ_CP015577.1|WP_063999474.1|542715_544518_-|menaquinone-biosynthesis-decarboxylase	unknown	unknown	gnl|CDD|163413
NZ_CP015577.1|WP_063999481.1|556480_557227_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015577.1|WP_063999477.1|553984_554335_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015577.1|WP_063999471.1|539074_540043_-|hypothetical-protein	unknown	unknown	gnl|CDD|372662
NZ_CP015577.1|WP_063999483.1|558419_559139_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015577.1|WP_063999476.1|553617_553974_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015577.1|WP_038453671.1|541697_541943_+|sulfurtransferase-like-selenium-metabolism-protein-YedF	unknown	unknown	gnl|CDD|236822
NZ_CP015577.1|WP_063999484.1|559141_559936_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015577.1|WP_063999469.1|535079_536897_+|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl|CDD|234729
NZ_CP015577.1|WP_063999479.1|555500_556292_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015577.1|WP_145914710.1|540167_540314_-|hypothetical-protein	unknown	unknown	gnl|CDD|237973

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP015577.1|WP_063999473.1|541939_542701_-|glutamate-racemase	gnl|CDD|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	3.79911e-78
NZ_CP015577.1|WP_082858161.1|536983_537547_+|hypothetical-protein	gnl|CDD|373322	pfam14827, dCache_3, Double sensory domain of two-component sensor kinase. Cache_3 is the periplasmic sensor domains of sensor histidine kinase of E. coli DcuS. This domain forms one of the components of the two-component signalling system that allows bacteria to adapt to changing environments. The ability of bacteria to monitor and adapt to their environment is crucial to their survival, and two-component signal transduction systems mediate most of these adaptive responses. One component is a histidine kinase sensor - this domain - most commonly part of a homodimeric transmembrane sensor protein, and the second component is a cytoplasmic response regulator. The two components interact in tandem through a phospho-transfer cascade.	1.5008e-09
NZ_CP015577.1|WP_063999474.1|542715_544518_-|menaquinone-biosynthesis-decarboxylase	gnl|CDD|163413	TIGR03701, mena_SCO4490, menaquinone biosynthesis decarboxylase, SCO4490 family. Members of this protein family are putative decarboxylases involved in a late stage of the alternative pathway for menaquinone, via futalosine, as in Streptomyces coelicolor and Helicobacter pylori. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	0
NZ_CP015577.1|WP_064000335.1|551862_552267_+|helix-hairpin-helix-domain-containing-protein	gnl|CDD|378965	pfam12836, HHH_3, Helix-hairpin-helix motif. The HhH domain is a short DNA-binding domain.	1.07134e-19
NZ_CP015577.1|WP_082858162.1|540423_541698_+|selenium-metabolism-membrane-protein-YedE/FdhT	gnl|CDD|236845	PRK11099, PRK11099, putative inner membrane protein; Provisional.	4.43659e-157
NZ_CP015577.1|WP_063999471.1|539074_540043_-|hypothetical-protein	gnl|CDD|372662	pfam13651, EcoRI_methylase, Adenine-specific methyltransferase EcoRI. This methylase recognizes the double-stranded sequence GAATTC, causes specific methylation on A-3 on both strands, and protects the DNA from cleavage by the EcoRI endonuclease.	3.37922e-132
NZ_CP015577.1|WP_063999469.1|535079_536897_+|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl|CDD|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_CP015577.1|WP_038453671.1|541697_541943_+|sulfurtransferase-like-selenium-metabolism-protein-YedF	gnl|CDD|236822	PRK11018, PRK11018, putative sulfurtransferase YedF.	2.87396e-43
NZ_CP015577.1|WP_145914709.1|537944_539060_-|DUF262-domain-containing-protein	gnl|CDD|377008	pfam03235, DUF262, Protein of unknown function DUF262.	3.92468e-19
NZ_CP015577.1|WP_145914710.1|540167_540314_-|hypothetical-protein	gnl|CDD|237973	PRK15488, PRK15488, thiosulfate reductase PhsA; Provisional.	8.50531e-14

Protein sequences

>NZ_CP015577.1|WP_064000335.1|551862_552267_+|helix-hairpin-helix-domain-containing-protein
MFKFVSSVALLSSLVYGAVNLNTASKEELMALPGIGESRAEAIIDYRNKNKFNSIEDIKNVKGIGDKRYETIKADLSINGDNDISNLKSKGNSSKKVKEKKDKINSDIKKDRTGKEKKDKVSKSKVSKDKGEGK
>NZ_CP015577.1|WP_063999474.1|542715_544518_-|menaquinone-biosynthesis-decarboxylase
MQKYIDILNKNGLLKIIDTPCDIDLEIAHLSYIEVKKDSSKALLFTHPTDKNGKKFDPVLTNTFGSFEALNLILGKDSNEIAKEIQGLLKPKKPTTIKEKLDFFSKLFSLKSALPKRLSSRGQCQEIAQNEPNLYDLPILKTWEEDGGAFITMGQVYTKDLNSNTQNLGMYRLQVHSKNELGMHWQIHKDAAHFFHEYKKAGVKMPVTVAIGGDPLYIWCGQAPLPKNIFELMLYGFIRKTPAKLVKSLTNDIFIPHDADYVIEGFVDTNRLKDEGKFGDHTGFYTPVEPFPVMEVTKITHKKNPIFHATVVGKPPLEDKYMGYATERIFMPLLQTTVPELIDYKMPENGVFHNLILAKFKECYPAQATQMMHAFWGVGQMSFVKHAIFVPETAPNLDDYANLTRYILNKFSPKSMLISSGVCDQLDHASPNSCFGGKLGIDASIDFEPETVNLLSDDELLAKFKSINKNLLEVKQHFTDTKNPICFVKFDKDKLVKSVFDELCKFKEHFKILIFVDSDARLNNLYMLVWRVTNNIDALRDIFINDEQICVDATRKHEWEGYTRGWPKETNCTRQVVEKLIKKGLLERDEQLFEKFEIFG
>NZ_CP015577.1|WP_063999473.1|541939_542701_-|glutamate-racemase
MKIAVFDSGIGGLSLLNEALKAFCGVDFIYFADNLNAPYGTKSKDEITKLTINAAQFLVEQNVDMIVIACNTATSAAICELRASFSLPIVGMEPAIKLGANSSKDILVVATPATIKGNKLLDLIHRVNLETKTRLLGMPKLVEFAQNMDFDSIEVKKYIKDELSKFDLDKTEFLVLGCTHFNYFKDSFRELLPAHVSIIDGINGTIKEMMRKLGNISKFGEKNKLRYFSSYEEMDTKLIEPYLKRLDEMSKIS
>NZ_CP015577.1|WP_038453671.1|541697_541943_+|sulfurtransferase-like-selenium-metabolism-protein-YedF
MANLENVEITYTLDIQGEACPMPAVATLEVLPKMKKGEVLEVLCDCPQAINSIPVDAKNRGFEVLAVEQDGPTLRFVIRKP
>NZ_CP015577.1|WP_082858162.1|540423_541698_+|selenium-metabolism-membrane-protein-YedE/FdhT
MTLLNASLAYNKFNLKVNSMNSVLNQFKQKYLVYFWDTAKAMVALAIIASIYFGFFGTGWQVTGEMTRWGGEFLELFGLDTSKYSYYQMTNLSGNPLTRYEGMVLIGMFLGATIAALWANKVKFRLPASGIRIAQAIIGGLLSGFGARLAFGCNLLDFFTGLPYFSLHTWEFAIFMVLGIWTATKVGKLRIFMPKVTLEKCGVHGKGIEHDKTRAKRHFRYGIAILVVTIAWLVYLFATTEPFALKNKASFVPLGLMFGLAFGFIISRGQVCFTSCFRDLFLFGRDNAAKGAFYGMIIATFIVFVLMLNGYTAFVRSFSVAVALGAFLFGFGIVFAGGCECGWTYRAAEGQMHFMIVGVANFAGTAVLALIYDEIPAWLKAGAKIQFLNEFGALPGLALNVGLLLLSIALIFAYKKRFFAKGGY
>NZ_CP015577.1|WP_145914710.1|540167_540314_-|hypothetical-protein
MFVKGVLCSTRCPIEAQVIDGKCNFIQGNPKFNANKTSVCAIFVLSQR
>NZ_CP015577.1|WP_063999471.1|539074_540043_-|hypothetical-protein
MGGNSNLQDSRNARADEFYTPLSLIENELKNYKKQFEGKTILCNCDDPRVSNFFRYFVMQFESLGLKKVIATCYKNNNPDLFSTEETEKAVYLEYDGSIKYSREEDFEKIPCKELKGNGDYKSSECIKFLDESDIVCTNPPFSKMKNFLPFLMEKNKKFLILGNLNHATWVETFPYFFENKVWCGYTDGHFWFQVPDSYEEKSTDYKMVDGIKYRRMGNICWFTNLEVAKRHEILETGKKFNPENYQKYDSYDAIDIGKNVDIPMDYDGVMGVPITFLTKHNPEQFKLIGELHTGKGNPYDFAFPKVNGKNKYVRLLIQRRK
>NZ_CP015577.1|WP_145914709.1|537944_539060_-|DUF262-domain-containing-protein
MSMEIKPIDLTIRELVNGFEDNSENGVKAYGGKLDIRPPYQREFIYKQEQKEKVIETVLKGYPLNTMYWAERKDGTYEIIDGQQRTMSICQFINNDFSYNFRTFAGMQADEKEKILNYKLFVYVCSGNDSEKLKWFETINIAGEELTKQELRNAVYSGKWVTSAKSYFSKTNCAAYNIGSKYLNGTMNRQAFLETAIRWAAKAKNDDDIKNYMAQHQTDTDAVELFNYFQNVITWIESKFKYRPLMKGLPWGPIYDKYKDAKLDKEELEEKISKLLEDSDIQKQAGIYEYVLDGDEHHLGIRAFDKNTVRTVYERQKGHCANPNCPKGKDHVFQIEEMEADHITPWAKGGHTVIENCQMLCKDCNRRKSDK
>NZ_CP015577.1|WP_082858161.1|536983_537547_+|hypothetical-protein
MSVFLLWLFAITKRANHKKYFDFNSELMASSLENERLNALAISILLSKSIKNCYVTQNHEICMNAAKEFIGIIGHIPKYKDVNIHMHNADVISLARSWDDTKFGDNLSGFRYMLNDIKNNMQSLSGIEVGRCGMFIRGISPIFFENKFMGSLEVMLNFSALDDVAKKSLYIKPKYIKCKFTAKFTEI
>NZ_CP015577.1|WP_063999469.1|535079_536897_+|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYIGSKEKKSVIIGGLKELEYRGYDSAGMAIMSGECCSDIHYFKAVGKLENLSNKMSDFSSEGFGVAIGHTRWATHGKPTEINAHPHLGEYSFVIHNGIIENYKELKDELESQGVKFISQTDTEVIVHLFERYNKTAKSPFEAYKQTIARLRGAYATLLITKAAYGEVFFAKNAAPLIVAKNGDEIYFSSSDASLIGLGKEAIYLEDGVIGHAKLGAIEIFDKNLKALQLSFTELPKDKGYAQKDGYRFFMEKEIYEQSQVISECLMGRVKDDNVNLEVSDDIFEGIDEVVLCACGTSYHAAITASYLFERIAKIRAKVEIASEFRYKEPLLKPNSLFIVISQSGETADTLEALKIAKEHGLKTMAICNVDNSSIVRLAGEVMLTRAGIEKGVASTKAFATQVICLWLLSLKLAKLRNVIDEKTMLNELKALRNIPSVVHFDPKLQERIYRLAKHYLHGHGFFFIGRDIFYPLALEGALKLKEISYLHAEGYPAGEMKHGPIALADDGLYTIALLPSTLLYEKTKSNVEELAARDANITAISPVEFELSDDFIQTNTYEHPMSEFFEMMIVLQLFALEISIRLGNDVDMPRNLAKSVTVE
>NZ_CP015577.1|WP_063999476.1|553617_553974_-|hypothetical-protein
MSKVLVRNKLGNKTFGFLLPADVDSASTFCANNLDGRYEIYQAKDPIDKGVEGGVNRVTVTGKNETGYKHTMTFYVKGSLNEDEIRTALLNKTFNNVKYAEVYIIGLSSVSVAATPTV
>NZ_CP015577.1|WP_063999477.1|553984_554335_-|hypothetical-protein
MLKQNINGVITTVQANGSEADIQALIGIMAGEITEYELKGQGGTEVAQLPNPVNKKVIILGKKATQTTGRLSTQISIPHVKPAKTFNEISADIRSKFTANYDVADKADYVSLKFDK
>NZ_CP015577.1|WP_063999478.1|555133_555490_-|hypothetical-protein
MPIYKITQKQGGKSITSTLEAKSLSSCKAFLEAVSTAKVTCIYKVEFEDLSDNIPVDDMQYYKQYKAFASDSHEYTKQVLVYNVKKTVNENEMANLIKTHLEVNGKTIDSVTCRLFMP
>NZ_CP015577.1|WP_063999479.1|555500_556292_-|hypothetical-protein
MIAPLLCCCLPDMSVFDYEFSKPVGLNAFYQYSSPEFYDTYYIYDIPIHKLEYGPATFTEDGDTIISFIPGIPYSRVIPIFENYHFNGFLTYTGDNVTPVLNYPSSSYYRYSTIFNLRFTISFSGNLELLFYEDYYDSNIKKTCVRTNTRIEPFSFGPFTSDLFNPFVDYSSLSYKHTYDRLKHKYDYSELTSFFQSFWDDVFNSTIVSLLTSSYSSASAEYTDIGYGSFPKFLGHSLGGEICTGVFFTSFTVNGTGRLVEFN
>NZ_CP015577.1|WP_063999480.1|556288_556468_-|hypothetical-protein
MALDESKCKEYVEKEIQLLEKIAEISMNNYNVNQAVYQVLTGESISYVKGYSFPIKMLK
>NZ_CP015577.1|WP_063999481.1|556480_557227_-|hypothetical-protein
MSNLKNISQMGVNEVFEDLAYNIAYGEVYNKLNSVIPLDDGYLKDALKSGASIMFSSALMLYMSKQEKFINDVTNKVQLALAAVFGNVGSYVRNKFGHLKGRKLKILSSIFGSVSSEKVEQAKMVIAYGDMIHQGQQVSTTSHQQNLVAFSSQNNSILQNSQKLDYAKAKLDSINKSMLLKLFTKRFTAQDVEMVKKITGSTSVDIDNLNKIADFMYVTDSSGNITGLTEQFMTMLNGLGYLNNKVAK
>NZ_CP015577.1|WP_158509965.1|557348_557516_-|hypothetical-protein
MFEKIKDFVFIVFGLFLFSFIAYNIYLLSDGFLASDVARQVNKELNITDDVYGGK
>NZ_CP015577.1|WP_063999482.1|557667_558423_-|hypothetical-protein
MTSVSSATNQVASKTGTFKGELEISTSRGRPVAFEITNAKDMRPNVTVEASKAPSVTVNPAKVEVSPTLNIDKPLSLDVSKPLNIAKLDELIAVQAQMRDNAVNSAQQVKKVAFESPLTLENFDKLVKAQESIKEYTDEKAKIEAEAHEFAKERVKREEEAHEILKEEADYKKTAVAIRDMDGTVIKEATPRDMALTYEASLARTYTDENTTTVNDLDFDLGIDAMGIFNGFRGGLSIQAEREAFSEFNSN
>NZ_CP015577.1|WP_063999483.1|558419_559139_-|hypothetical-protein
MPLPLAPALPALLAELNALLAASGAMYAAQEFYKRFQNGEISPVDYEYIISKIPASDLSTSDNDIAPKKGFISYGNESLSVNDWQYEAFNNLLEPRMQGSLFGALKDFNSGRATPAQVDMLKDYGLVRSVSGSTSGSGYDSSSSESDSNSYTQQMISELASTISKLQEKFTVEIDILKSEIIQLENSSLNSKDFYDEINSINSNIADLTASIHEANLSEGGLIGAITRSNLELNNILVL
>NZ_CP015577.1|WP_063999484.1|559141_559936_-|hypothetical-protein
MADSSQTPCIIVKRSIGSVYGFIVVPETFGLDVFYNVSTHDFVLSNGEKKIVEYFSSIFLKYLGREFEILFPFPFFKNGKEIFDFSLITYELINLNLFEDSSTKIKSSKSDLVEYLFDITDLKFTVNLYPTKDSTTCSSYSFSLEPLEELVTMLRSNDKDGSTKTDSTPTNSTLTDSTPTIQSDLIDFSGKFGNFEKNTLVTCTLYPNLYFKVKNVTILQTSFNLYTFSYCLQTMGKFANNEMIEDKTLQENLIFAPLNLISRI

Crispr_ID: NZ_CP015577_2

• CRISPR_ID: NZ_CP015577_2
• CRISPR_location: 601230-601716
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 7 spacers

Consensus repeat of NZ_CP015577_2

Consensus_repeat	Method
AGTGTAAATTTATCCTTGTAGGATTTGAAAC	CRT
GTGTAAATTTATCCTTGTAGGATTTGAAAC	PILER-CR
GTGTAAATTTATCCTTGTAGGATTT	CRISPRCasFinder

spacers of NZ_CP015577_2

>2.1|601261|33|NZ_CP015577|CRT
GATTTTGATACTCTTAAAAAAAGTCGTATTTTG
>2.2|601325|33|NZ_CP015577|CRT
AAGGTGGCAATACAGGTGAAAATCAAAAAATAG
>2.3|601389|35|NZ_CP015577|CRT
TAGCCATAGCACTTTTGATAGGGCTATAGATATTA
>2.4|601455|35|NZ_CP015577|CRT
TTGCTTATAAGCTTATCTTTTACAACCACACCTAT
>2.5|601521|34|NZ_CP015577|CRT
TTTTTGCTATTAATATCCCTGTCAAAAAGCTTTA
>2.6|601586|34|NZ_CP015577|CRT
ATGACTAATAATAGAAAAATAGCTAAGCTATTGC
>2.7|601651|35|NZ_CP015577|CRT
AATTTAACTCAAACAGAATACTTAACGATTAAAAA
>2.8|601261|34|NZ_CP015577|PILER-CR
GATTTTGATACTCTTAAAAAAAGTCGTATTTTGA
>2.9|601325|34|NZ_CP015577|PILER-CR
AAGGTGGCAATACAGGTGAAAATCAAAAAATAGA
>2.10|601389|36|NZ_CP015577|PILER-CR
TAGCCATAGCACTTTTGATAGGGCTATAGATATTAA
>2.11|601455|36|NZ_CP015577|PILER-CR
TTGCTTATAAGCTTATCTTTTACAACCACACCTATA
>2.12|601521|35|NZ_CP015577|PILER-CR
TTTTTGCTATTAATATCCCTGTCAAAAAGCTTTAA
>2.13|601586|35|NZ_CP015577|PILER-CR
ATGACTAATAATAGAAAAATAGCTAAGCTATTGCA
>2.14|601256|39|NZ_CP015577|CRISPRCasFinder
GAAACGATTTTGATACTCTTAAAAAAAGTCGTATTTTGA
>2.15|601320|39|NZ_CP015577|CRISPRCasFinder
GAAACAAGGTGGCAATACAGGTGAAAATCAAAAAATAGA
>2.16|601384|41|NZ_CP015577|CRISPRCasFinder
GAAACTAGCCATAGCACTTTTGATAGGGCTATAGATATTAA
>2.17|601450|41|NZ_CP015577|CRISPRCasFinder
GAAACTTGCTTATAAGCTTATCTTTTACAACCACACCTATA
>2.18|601516|40|NZ_CP015577|CRISPRCasFinder
GAAACTTTTTGCTATTAATATCCCTGTCAAAAAGCTTTAA
>2.19|601581|40|NZ_CP015577|CRISPRCasFinder
GAAACATGACTAATAATAGAAAAATAGCTAAGCTATTGCA
>2.20|601646|41|NZ_CP015577|CRISPRCasFinder
GAAACAATTTAACTCAAACAGAATACTTAACGATTAAAAAT

CRISPR arrays and Neighbor proteins around NZ_CP015577_2

CRISPR arrays

The CRISPR arrays of NZ_CP015577_2

>merge|NZ_CP015577|2|601230-601716|CRT,PILER-CR,CRISPRCasFinder
TGTGTAAATTTATCCTTGTAGGATTTGAAACGATTTTGATACTCTTAAAAAAAGTCGTATTTTGAGTGTAAATTTATCCTTGTAGGATTTGAAACAAGGTGGCAATACAGGTGAAAATCAAAAAATAGAGTGTAAATTTATCCTTGTAGGATTTGAAACTAGCCATAGCACTTTTGATAGGGCTATAGATATTAAGTGTAAATTTATCCTTGTAGGATTTGAAACTTGCTTATAAGCTTATCTTTTACAACCACACCTATAGTGTAAATTTATCCTTGTAGGATTTGAAACTTTTTGCTATTAATATCCCTGTCAAAAAGCTTTAAGTGTAAATTTATCCTTGTAGGATTTGAAACATGACTAATAATAGAAAAATAGCTAAGCTATTGCAGTGTAAATTTATCCTTGTAGGATTTGAAACAATTTAACTCAAACAGAATACTTAACGATTAAAAATGTGTAAATTTATCCTTGTAGGATTTAAGAT

>NZ_CP015577|2|2|601230-601716|CRT
TGTGTAAATTTATCCTTGTAGGATTTGAAAC	GATTTTGATACTCTTAAAAAAAGTCGTATTTTG
AGTGTAAATTTATCCTTGTAGGATTTGAAAC	AAGGTGGCAATACAGGTGAAAATCAAAAAATAG
AGTGTAAATTTATCCTTGTAGGATTTGAAAC	TAGCCATAGCACTTTTGATAGGGCTATAGATATTA
AGTGTAAATTTATCCTTGTAGGATTTGAAAC	TTGCTTATAAGCTTATCTTTTACAACCACACCTAT
AGTGTAAATTTATCCTTGTAGGATTTGAAAC	TTTTTGCTATTAATATCCCTGTCAAAAAGCTTTA
AGTGTAAATTTATCCTTGTAGGATTTGAAAC	ATGACTAATAATAGAAAAATAGCTAAGCTATTGC
AGTGTAAATTTATCCTTGTAGGATTTGAAAC	AATTTAACTCAAACAGAATACTTAACGATTAAAAA
TGTGTAAATTTATCCTTGTAGGATTTAAGAT

>NZ_CP015577|2|2|601231-601650|PILER-CR
GTGTAAATTTATCCTTGTAGGATTTGAAAC	GATTTTGATACTCTTAAAAAAAGTCGTATTTTGA
GTGTAAATTTATCCTTGTAGGATTTGAAAC	AAGGTGGCAATACAGGTGAAAATCAAAAAATAGA
GTGTAAATTTATCCTTGTAGGATTTGAAAC	TAGCCATAGCACTTTTGATAGGGCTATAGATATTAA
GTGTAAATTTATCCTTGTAGGATTTGAAAC	TTGCTTATAAGCTTATCTTTTACAACCACACCTATA
GTGTAAATTTATCCTTGTAGGATTTGAAAC	TTTTTGCTATTAATATCCCTGTCAAAAAGCTTTAA
GTGTAAATTTATCCTTGTAGGATTTGAAAC	ATGACTAATAATAGAAAAATAGCTAAGCTATTGCA
GTGTAAATTTATCCTTGTAGGATTTGAAAC

>NZ_CP015577|2|2|601231-601711|CRISPRCasFinder
GTGTAAATTTATCCTTGTAGGATTT	GAAACGATTTTGATACTCTTAAAAAAAGTCGTATTTTGA
GTGTAAATTTATCCTTGTAGGATTT	GAAACAAGGTGGCAATACAGGTGAAAATCAAAAAATAGA
GTGTAAATTTATCCTTGTAGGATTT	GAAACTAGCCATAGCACTTTTGATAGGGCTATAGATATTAA
GTGTAAATTTATCCTTGTAGGATTT	GAAACTTGCTTATAAGCTTATCTTTTACAACCACACCTATA
GTGTAAATTTATCCTTGTAGGATTT	GAAACTTTTTGCTATTAATATCCCTGTCAAAAAGCTTTAA
GTGTAAATTTATCCTTGTAGGATTT	GAAACATGACTAATAATAGAAAAATAGCTAAGCTATTGCA
GTGTAAATTTATCCTTGTAGGATTT	GAAACAATTTAACTCAAACAGAATACTTAACGATTAAAAAT
GTGTAAATTTATCCTTGTAGGATTT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015577.1|WP_145914687.1|608238_608565_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015577.1|WP_063999530.1|608566_608749_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015577.1|WP_145914686.1|591460_592783_-|MATE-family-efflux-transporter	unknown	unknown	gnl|CDD|240539
NZ_CP015577.1|WP_063999517.1|598157_599357_+|M48-family-metallopeptidase	unknown	unknown	gnl|CDD|320702
NZ_CP015577.1|WP_063999513.1|592845_593331_-|cation:dicarboxylase-symporter-family-transporter	unknown	unknown	gnl|CDD|366058
NZ_CP015577.1|WP_082858166.1|610326_610959_+|S24-family-peptidase	unknown	unknown	gnl|CDD|119397
NZ_CP015577.1|WP_063999520.1|600597_600945_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015577.1|WP_063999525.1|604526_604715_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP015577.1|WP_063999516.1|596726_598103_+|sodium-dependent-transporter	unknown	unknown	gnl|CDD|271367
NZ_CP015577.1|WP_063999519.1|600139_600601_+|DUF4149-domain-containing-protein	unknown	unknown	gnl|CDD|372664
NZ_CP015577.1|WP_063999531.1|608831_609539_+|LexA-family-transcriptional-regulator	unknown	unknown	gnl|CDD|119397
NZ_CP015577.1|WP_063999532.1|609657_609855_-|hypothetical-protein	unknown	unknown	gnl|CDD|274987
NZ_CP015577.1|WP_063999514.1|593476_594775_+|MFS-transporter	unknown	unknown	gnl|CDD|340927
NZ_CP015577.1|WP_063999523.1|602975_603764_-|hypothetical-protein	unknown	unknown	gnl|CDD|316042
NZ_CP015577.1|WP_063999528.1|606703_608185_-|hypothetical-protein	unknown	unknown	gnl|CDD|366234
NZ_CP015577.1|WP_063999512.1|590864_591485_-|M48-family-metallopeptidase	unknown	unknown	gnl|CDD|307807
NZ_CP015577.1|WP_063999515.1|594777_596706_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|223562
NZ_CP015577.1|WP_063999526.1|605104_605593_-|host-nuclease-inhibitor-protein-Gam	unknown	unknown	gnl|CDD|377819
NZ_CP015577.1|WP_063999518.1|599343_600138_+|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl|CDD|236467
NZ_CP015577.1|WP_158509968.1|604752_604902_-|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP015577.1|WP_145914686.1|591460_592783_-|MATE-family-efflux-transporter	gnl|CDD|240539	cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	2.29927e-153
NZ_CP015577.1|WP_063999517.1|598157_599357_+|M48-family-metallopeptidase	gnl|CDD|320702	cd07343, M48A_Zmpste24p_like, Peptidase M48 subfamily A, a type 1 CaaX endopeptidase. This family contains peptidase family M48 subfamily A which includes a number of well-characterized genes such as those found in humans (ZMPSTE24, also known as farnesylated protein-converting enzyme 1 or FACE-1 or Hs Ste24), Taenia solium metacestode (TsSte24p), Arabidopsis (AtSte24) and yeast (Ste24p). Ste24p contains the zinc metalloprotease motif (HEXXH), likely exposed on the cytoplasmic side. It is thought to be intimately associated with the endoplasmic reticulum (ER), regardless of whether its genes possess the conventional signal motif (KKXX) in the C-terminal. Proteins in this family proteolytically remove the C-terminal three residues of farnesylated proteins. Ste24p is involved in the post-translational processing of prelamin A to mature lamin A, a major component of the nuclear envelope. ZmpSte24 deficiency causes an accumulation of prelamin A leading to lipodystrophy and other disease phenotypes, while mutations in this gene or in that encoding its substrate, prelamin A, result in a series of human inherited diseases known as laminopathies, the most severe of which are Hutchinson Gilford progeria syndrome (HGPS) and restrictive dermopathy (RD) which arise due to unsuccessful maturation of prelamin A. Two forms of mandibuloacral dysplasia, a condition that causes a variety of abnormalities involving bone development, skin pigmentation, and fat distribution, are caused by mutations in two different genes; mutations in the LMNA gene, which normally provides instructions for making lamin A and lamin C, cause mandibuloacral dysplasia with A-type lipodystrophy (MAD-A), and mutations in the ZMPSTE24 gene cause mandibuloacral dysplasia with B-type lipodystrophy (MAD-B). Within cells, these genes are involved in maintaining the structure of the nucleus and may play a role in many cellular processes. Certain HIV protease inhibitors have been shown to inhibit the enzymatic activity of ZMPSTE24, but not enzymes involved in prelamin A processing.	8.92285e-144
NZ_CP015577.1|WP_063999513.1|592845_593331_-|cation:dicarboxylase-symporter-family-transporter	gnl|CDD|366058	pfam00375, SDF, Sodium:dicarboxylate symporter family.	2.57765e-17
NZ_CP015577.1|WP_082858166.1|610326_610959_+|S24-family-peptidase	gnl|CDD|119397	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the protein. In the presence of single-stranded DNA, the LexA, UmuD and MucA proteins interact with RecA, activating self cleavage, thus either derepressing transcription in the case of LexA or activating the lesion-bypass polymerase in the case of UmuD and MucA. The LexA proteins are serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. LexA sequence homologs are found in almost all of the bacterial genomes sequenced to date, covering a large number of phyla, suggesting both, an ancient origin and a widespread distribution of lexA and the SOS response.	7.64518e-17
NZ_CP015577.1|WP_063999532.1|609657_609855_-|hypothetical-protein	gnl|CDD|274987	TIGR04111, conserved_hypothetical_protein, phage-associated protein, BcepMu gp16 family. Members of this protein family occur in Burkholderia phage BcepMu, Pseudomonas phage B3, and Burkholderia phage KS10, and many bacterial putative prophage regions. The member from Burkholderia phage BcepMu is named gp16. Homology suggests DNA-binding activity. [Mobile and extrachromosomal element functions, Prophage functions].	2.27051e-05
NZ_CP015577.1|WP_063999516.1|596726_598103_+|sodium-dependent-transporter	gnl|CDD|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	3.56151e-155
NZ_CP015577.1|WP_063999519.1|600139_600601_+|DUF4149-domain-containing-protein	gnl|CDD|372664	pfam13664, DUF4149, Domain of unknown function (DUF4149).	2.1757e-06
NZ_CP015577.1|WP_063999531.1|608831_609539_+|LexA-family-transcriptional-regulator	gnl|CDD|119397	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the protein. In the presence of single-stranded DNA, the LexA, UmuD and MucA proteins interact with RecA, activating self cleavage, thus either derepressing transcription in the case of LexA or activating the lesion-bypass polymerase in the case of UmuD and MucA. The LexA proteins are serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. LexA sequence homologs are found in almost all of the bacterial genomes sequenced to date, covering a large number of phyla, suggesting both, an ancient origin and a widespread distribution of lexA and the SOS response.	1.09335e-15
NZ_CP015577.1|WP_063999514.1|593476_594775_+|MFS-transporter	gnl|CDD|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.059e-81
NZ_CP015577.1|WP_063999523.1|602975_603764_-|hypothetical-protein	gnl|CDD|316042	pfam13481, AAA_25, AAA domain. This AAA domain is found in a wide variety of presumed DNA repair proteins.	4.406e-07
NZ_CP015577.1|WP_063999528.1|606703_608185_-|hypothetical-protein	gnl|CDD|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.92768e-05
NZ_CP015577.1|WP_063999512.1|590864_591485_-|M48-family-metallopeptidase	gnl|CDD|307807	pfam01863, DUF45, Protein of unknown function DUF45. This protein has no known function. Members are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C-terminus being the most conserved region, containing three conserved histidines. This motif is similar to that found in Zinc proteases, suggesting that this family may also be proteases.	8.3964e-51
NZ_CP015577.1|WP_063999515.1|594777_596706_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl|CDD|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	1.08239e-175
NZ_CP015577.1|WP_063999526.1|605104_605593_-|host-nuclease-inhibitor-protein-Gam	gnl|CDD|377819	pfam07352, Phage_Mu_Gam, Bacteriophage Mu Gam like protein. This family consists of bacterial and phage Gam proteins. The gam gene of bacteriophage Mu encodes a protein which protects linear double stranded DNA from exonuclease degradation in vitro and in vivo.	3.19203e-34
NZ_CP015577.1|WP_063999518.1|599343_600138_+|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl|CDD|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	8.54711e-90

Protein sequences

>NZ_CP015577.1|WP_063999520.1|600597_600945_-|hypothetical-protein
MQVDTNLSTIISQSSPTGNLSISKTNTKENAMQGASGGVGKANSSQSSAEELQKRLDKLKEQLAKIEAQISKMQSNDNPYAKEMTNSLNAERASIMAQIQTILAQMLKAAKQQSA
>NZ_CP015577.1|WP_063999519.1|600139_600601_+|DUF4149-domain-containing-protein
MRKIYIFLLAMIVGMEISIGAFLAPVVFFPASIIGEGVLTHFQSGQLMTQVFLKFNNVLLVVSVVAIIFEGLNLRNKDESFTKKISSFMLALIALILALAFIFYFSAYVVEAQNLGAEATKSVEFAKMHKASELVMKIMMIAQALLFYIKAKA
>NZ_CP015577.1|WP_063999518.1|599343_600138_+|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MKISEALKSAKTELDSSNLAWRFLSFYLKQPKEWVFLNSNLELENENEFFCLINRYKNGEPFEYITGVCEFLGREFSVGKGVLIPRFETEILVQKALNIAKNYYAPKICEIGIGSGVISISLALELEKAKFSATDISLEAIKFARKNIDKFGVEIEINHTSLLDGVNDKFDIIVSNPPYIADDYELDIWVKNEPKTALFGGANGDELLKQIINLAKTRTKYLICEIGYDQKASLSKELEDCGFEYEFYKDLAGFDRGFVAKIKE
>NZ_CP015577.1|WP_063999517.1|598157_599357_+|M48-family-metallopeptidase
MLQILIGIYFIYTIYKVFLSLLQIGFVKQNLNKPAVILAQDDYQKAGLLALANEKLSVISSIYQMILLIIWSAWGAGYLQSIIAPNGIIWQNTLLVVVFLVISALLNLPFDIYEKFIKDKKFGFSNLTPKLFILDTLKTLGLTVIFGGLVVYLILLCFAWLGEFWWIWAFWLSFGIILLVNLVYPTIIAPLFNKVSPLSDEELKEAINSLLQKCGFKSSGVFVVDASKRDKRLNAYFGGLGGTKRVVLFDTLIAKLSQSEIIAVLGHELGHFKHKDLIKNIAFMFVILFVIFGVFGNIPNSVYEALGLDSSGGSFFLVLFLYSPIISAIFEPLMSAFSRSHEFGADEFGASSGGAKNMISALKKLGEENRAFPISHPVYSFVYHSHPSLYERVKKLENL
>NZ_CP015577.1|WP_063999516.1|596726_598103_+|sodium-dependent-transporter
MDARQTWSSQLTYILAVAGATVGFGATWRFPYLVGQNGGGAYVLTFCIAMIVIGIPMILVENAIGRRLYINSVDAFGGMTNGKKINKAWKIVGWMGLCGAFGIMAYYMVIGGWVLNYIYNIIFGNLNLTSVVSADLTASFYDKSIINAPFAISIATLVFVIINFVILVRGAVAGIEKAAKYLMPILFLLMIGMVIRNLTLDGALEGIKFYLTPDFSKISAKLFIDVLGQVFFALSLGFGVMITLSSFVRKDENLVKTSVITGVLNTLIAVVAGFMIFPSLFTFGVAPDSGPSLVFKSLPIVFSHMFAGEFLAVAFFSLLMIAALTTSLPIYEVLITVLEEKFKIKRLKAIFITLGGIFILGNIPSLMATNLLSDVTVFGKNIFDAYDAISATIFFVLTSLLCAIFVGWVLGDEAKKEILFGSNGAHKIINIWFFYIKYIIPFLILVVFVSSFYDNFIK
>NZ_CP015577.1|WP_063999515.1|594777_596706_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MALIDLIEVSKKFGDKEILKDANFSVNEKERIAIIGKNGGGKSTLMKILCGAYEIDNGRVITQNSISVQMLAQSPKFDSKFSVREALNNELKEIFDAIKEYEDVLHAISGDENNKELLARQDELIKFIESKDGWNIENKIERVLESFVLKEYENRPIASLSGGEVRRVALGALILKKPDVLLLDEPTNHLDVYMVRFLEELLLNSNQTIVFISHDRYFIDRLATRSVEIEDGNLRSFDGGYANYLTKKEEILKSLAKTHETLIKQLKSEEEWLRRGVKARLKRNEGRKQRVFAMREEAKKNPGVIRRVKLELERASKSFNQGGINQNRKKMLFECKNLSKTLSGKELFKDFNARVLQGERIGIVGRNGSGKSTLLKILLGELEADSGIINRGEIKIGYFDQNRRSIDEEKSLIELFCPNGGDHIMVRGRNYHVYGYLKNFLFPKEFLDKPVSVLSGGEKNRLALALLFTKEYDCLILDEPTNDLDIATINILEEYLLSFEGAVLIVSHDRYFIDKITNKLWAYEHGKIEQIYMEYSEYLDYEEELEQLNAMEKEFSEDELVKEKQKTATVKLSYKQNQILQNYPALIEDLEKRIKELNHALSTPEIYQKVGLQTLFEELEEKKGELNNLENEYFEVLELSQN
>NZ_CP015577.1|WP_063999514.1|593476_594775_+|MFS-transporter
MARGFSRSDIKILGLSSLGGMLEFYDFIIFVFFASYISHLFFPATLDPFWSLLNTYGTFAAGYLARPLGGIIMAHFGDKNGRKNMFMLSILLMVIPTFALGLMPTFETIGYVAPVFLVLVRLLQGIAIGGELPGAWVFISEHALKNRFYYSVGVLTSAVVAGILLGSIVTMIVKNVYSDADIQGGMWRLPFIIGGIFGVISIYLRRYLSETPVFKQMQEMNDIEKMPIKTVIKYHKLDNLMSMLVSWVLTGCIVVMILLMPNFMPGAFEKSEIEVGRITTIYMQMVCIVLMCAGCFIYGKFSDKFGVSKATIGFSGIFIVAVFAYFYALYNGAGFNIVLTFYLLAGFFGCIGPCGAPFFMIALYPNKIRFSGISFSYNIAYAIAGGVTPPFAVAMVHKFDPMYLAYYMVLLGFVSIFCAIWFMKYRKDVNRG
>NZ_CP015577.1|WP_063999513.1|592845_593331_-|cation:dicarboxylase-symporter-family-transporter
MQKIKRTKLLLAILLGLVLGSVCGIVFAIFIPSHSPLYASTLEIAKPFGLVFINLLKMIVVLVIIFTLISGVANISPFVWLNGLSPWLFLRRAFEPFLVAFITRSSGATLPISMNIAERKMGINKGIYSFTLPLGATINMDAIYLRVCCPLTKGREVDIWL
>NZ_CP015577.1|WP_145914686.1|591460_592783_-|MATE-family-efflux-transporter
MNNLSLTRLATPIFFDMLLRTLTLIINTIMVAKVDVNLVGAMGAGNQIFNLFVTVFSFLSVGCSVVVAQSLGARNTNLASRAIHISLSFNAILGLVCTSAIYFHTHLALELLQIPSAVMQESYSYLHTLSIALFLEAVSIVIAAIVRVKNFAFHIMLISAFMNVLTIIGNAIALFGFFDLPNYSLAGVGVSVIFARVVGVILLAYVLVKAAKIHIHFGLFFKFSKDIIAKILKVGLPSAGENLLWIGQYMVAFSFVASMGEQSLSVQTIYFQISMFIFLAATAISIANEIIVGHLVGAMEFDKAYKKAFDSLKIGALITWSVLFIFYLSREEIMNTLNLTNELKAIMRPLFTLSLVLESGRAFNIIMVNSLRASGDAKFPFVMGVLFMWGVSLPLGYLLGIHLGYGIIGVWIGFCADEWARALANTLRWKSRKWQSKRLV
>NZ_CP015577.1|WP_063999512.1|590864_591485_-|M48-family-metallopeptidase
MAIKKTSVKLDGFNVKITYKAVKYLRLKVTKDGLVLVSAPFFTSKQSIVNLVEKNRAWIAGTLAKIQIPSDEIRFLGQAYKLKFDENINFVSVEQGKIIAPNQKELDKFMLQKAKEIFEKYIKFYSPKINKPINHVSIKKMTTRWGSCNSKKGYINLNLNLIQKDERFIEYVVLHELTHLIYPHHQNSFYEFIQSLMPDYKSIEKL
>NZ_CP015577.1|WP_063999523.1|602975_603764_-|hypothetical-protein
MIFDMLKNNELRHDSFKSTTEFLIDGFLPKQLITMIYADGGMGKSALAQAVSKKLASSNTNCFTIDLDNPMSVLESRNVSEFIDQIPNFHYISRASLDICVTELLETFNKESHGSSYKDCLFIFDSLVNFVDVHNEAKTMYVFEIFKNMREAGATILLLHHSNKDGKNYQGVNTIRNAIDCMYQLSKRPSSNDELNFLLEVKKERAGIKDRAYSVKLPNFELENMGETTARMSELEISFVTKAKKVLASTSIMQMQLLAELG
>NZ_CP015577.1|WP_063999525.1|604526_604715_-|hypothetical-protein
MCYMIEKKDKSLLNLKLILDDLDEMIEDLSEAISALDEQEIYENAKALVEYYCKTKKKLNLN
>NZ_CP015577.1|WP_158509968.1|604752_604902_-|hypothetical-protein
MTINNTLLGMLCFFFMLFGFITCVVIAFDMAKMFLHIVSDWISVFLSSR
>NZ_CP015577.1|WP_063999526.1|605104_605593_-|host-nuclease-inhibitor-protein-Gam
MQINSFSDVDVALKRLCEVSVGIEKINGEVTLECNRIKEARKSEVERLESEKSFLEQQITLFCEENKAEFAEKRSKEFTFGEIGYRISKSVSIPRVKAKLEALVSSIKAFGLAKECISYTETPNKEALAELKDEDLVKLGLKRVVKDNFRIVPKIESLQMGA
>NZ_CP015577.1|WP_063999528.1|606703_608185_-|hypothetical-protein
MWGQGVAKKYGICLKTLYVWAKLNKKEDVEIEDDELSIDFRAKFKSSSFEMKALEWAVGFMLHNPLSSKRFVYEKLEIYAKENNLNIGSYQSFARLTASSEIKAMLLRATAGDRGVRNEIASFVIRDLNCYESLELVCGDQIVFDFDATSPDGEVLNPNAYVWIDMESGAIIGVDVTFGKYNRLSVGRSLKSALRFGIPETIYTDNGKPELSNYIEQVRSQLSGIKFRDFDEFAPNMIHKKAKPGNSRAKPIENIFNHVQRRMSEIVFFERGGASYHKDKRGNTQEIIKKYMKENPLNYEEFINYFEQGIRWWNEHYNSSRKIYPMKSFLEKLEAKPKAIFDETTLDFIFSQRRAIKVKNSSVTLNIMGQKRTYSHPKLCKFNGKTMEVRINENDYERVNIIDINSHRAICEANIIDRIDPRDHEKVRAQIAKNEAITKAVRAAFGYYFDLYKRVNAMNAYTSVAYEAKFKNEKTRKINKKIAMSNEELLNAM
>NZ_CP015577.1|WP_145914687.1|608238_608565_-|hypothetical-protein
MWVNSRQAAEILGVNLRKLQRCVVKAQNNGQKILAIDTKYFSYSYTDGIGRGGKTLQIWIDDALFNDNPSQKESDDEKNSAAFCGEWIVDILWTAMMSVICFAKLAKK
>NZ_CP015577.1|WP_063999530.1|608566_608749_-|hypothetical-protein
MIDLIGNVKSGGVAEQIQIKTNKTLKRFCRENKLSYGSILNGYFSKKAKNTFKKVGIKVA
>NZ_CP015577.1|WP_063999531.1|608831_609539_+|LexA-family-transcriptional-regulator
MDLGKKIRIAREEQGLSQAELANMLNITSRTLQNYEYGTSVPDIKIVQEMAKIFKVKISYFLDDNFDVSIDVSPVVSNQISVVSPSNLKKSQLEQIKNDQIYIRQLSSSVGAGESVDIDGIEIYDTDILVPFSQMLFKVRPKNTDRVRCMKVDGYSMVPMLFPDSWVIADVTATFAGDGLYIINYCGNFMVKLLQKSPNGVLHIKSINKDYESYDIEPDDDVNVYIVGKVLRCVI
>NZ_CP015577.1|WP_063999532.1|609657_609855_-|hypothetical-protein
MSVREYFDRNCISIRAWAKKHELNERVAYMVINKEFIGSDKSYAKGKKVRMAKNVEQIALETLFG
>NZ_CP015577.1|WP_082858166.1|610326_610959_+|S24-family-peptidase
MEVEEQIKKLREYYGVDNDNQLSIALGLKDNSSIPQWRKNQRVPAKHLLKISNNTKKDKIIKKQSNTTSHDDNLDGYWIKKVNSKVGAGKSIDITGVELEVVKDKVFIPSSFFKTLKNPNNLRMMQVDGYSMIPDLLPDSYVIYEKGIEFIGDGFYIINFDGLLMVKTIQKKPNGDLLIKSSNPAYESFLLNQDSEMCCYIVGKVLRSII

Crispr_ID: NZ_CP015577_3

• CRISPR_ID: NZ_CP015577_3
• CRISPR_location: 1071605-1071707
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP015577_3

Consensus_repeat	Method
TTTTGCTCTGTTTGGTTTGTATCTTTTT	CRISPRCasFinder

spacers of NZ_CP015577_3

>3.1|1071633|47|NZ_CP015577|CRISPRCasFinder
TTGTTTCACTAGATTTTATCGTATCAAAAACTGAATATTCAGTTCTG

CRISPR arrays and Neighbor proteins around NZ_CP015577_3

CRISPR arrays

The CRISPR arrays of NZ_CP015577_3

>merge|NZ_CP015577|3|1071605-1071707|CRISPRCasFinder
TTTTGCTCTGTTTGGTTTGTATCTTTTTTTGTTTCACTAGATTTTATCGTATCAAAAACTGAATATTCAGTTCTGTTTTGCTCTGTTTGGTTTATATCTTTTT

>NZ_CP015577|3|3|1071605-1071707|CRISPRCasFinder
TTTTGCTCTGTTTGGTTTGTATCTTTTT	TTGTTTCACTAGATTTTATCGTATCAAAAACTGAATATTCAGTTCTG
TTTTGCTCTGTTTGGTTTATATCTTTTT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015577.1|WP_063999894.1|1064330_1065368_+|coproporphyrinogen-III-oxidase-family-protein	unknown	unknown	gnl|CDD|181428
NZ_CP015577.1|WP_063999900.1|1069755_1070133_-|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl|CDD|234639
NZ_CP015577.1|WP_063999898.1|1067668_1068883_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP015577.1|WP_063999907.1|1078225_1079323_-|molecular-chaperone-DnaJ	unknown	unknown	gnl|CDD|236757
NZ_CP015577.1|WP_063999901.1|1070132_1070894_-|DNA-processing-protein-DprA	unknown	unknown	gnl|CDD|376794
NZ_CP015577.1|WP_063999896.1|1065888_1066650_+|twin-arginine-translocase-subunit-TatC	unknown	unknown	gnl|CDD|376413
NZ_CP015577.1|WP_038454589.1|1077366_1077918_+|single-stranded-DNA-binding-protein	unknown	unknown	gnl|CDD|236275
NZ_CP015577.1|WP_063999899.1|1068889_1069759_-|RsmB/NOP-family-class-I-SAM-dependent-RNA-methyltransferase	unknown	unknown	gnl|CDD|223222
NZ_CP015577.1|WP_063999895.1|1065418_1065889_+|Sec-independent-protein-translocase-subunit-TatB	unknown	unknown	gnl|CDD|235219
NZ_CP015577.1|WP_063999903.1|1073156_1073969_+|HDOD-domain-containing-protein	unknown	unknown	gnl|CDD|370050
NZ_CP015577.1|WP_063999897.1|1066642_1067659_+|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl|CDD|234666
NZ_CP015577.1|WP_063999905.1|1075886_1076879_+|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl|CDD|236276
NZ_CP015577.1|WP_063999906.1|1076965_1077352_+|30S-ribosomal-protein-S6	unknown	unknown	gnl|CDD|179034
NZ_CP015577.1|WP_063999904.1|1073965_1075894_+|VacB/RNase-II-family-3'-5'-exoribonuclease	unknown	unknown	gnl|CDD|223631
NZ_CP015577.1|WP_063999893.1|1063717_1064188_-|RNA-pyrophosphohydrolase	unknown	unknown	gnl|CDD|234820
NZ_CP015577.1|WP_038454590.1|1077928_1078189_+|30S-ribosomal-protein-S18	unknown	unknown	gnl|CDD|178997
NZ_CP015577.1|WP_038454592.1|1079507_1080179_+|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|223816
NZ_CP015577.1|WP_063999908.1|1080175_1081414_+|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl|CDD|223715
NZ_CP015577.1|WP_038454584.1|1071990_1073013_-|ketol-acid-reductoisomerase	unknown	unknown	gnl|CDD|235491
NZ_CP015577.1|WP_063999892.1|1062506_1063718_-|aspartate-kinase	unknown	unknown	gnl|CDD|235843

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP015577.1|WP_063999894.1|1064330_1065368_+|coproporphyrinogen-III-oxidase-family-protein	gnl|CDD|181428	PRK08446, PRK08446, coproporphyrinogen III oxidase family protein.	0
NZ_CP015577.1|WP_063999900.1|1069755_1070133_-|Holliday-junction-resolvase-RuvX	gnl|CDD|234639	PRK00109, PRK00109, Holliday junction resolvase RuvX.	4.10265e-32
NZ_CP015577.1|WP_063999907.1|1078225_1079323_-|molecular-chaperone-DnaJ	gnl|CDD|236757	PRK10767, PRK10767, chaperone protein DnaJ; Provisional.	4.17796e-160
NZ_CP015577.1|WP_063999901.1|1070132_1070894_-|DNA-processing-protein-DprA	gnl|CDD|376794	pfam02481, DNA_processg_A, DNA recombination-mediator protein A. The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In H. pylori, dprA is required for natural chromosomal and plasmid transformation. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyze the homology-dependent formation of joint molecules. While the E.coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation.	2.80968e-69
NZ_CP015577.1|WP_063999896.1|1065888_1066650_+|twin-arginine-translocase-subunit-TatC	gnl|CDD|376413	pfam00902, TatC, Sec-independent protein translocase protein (TatC). The bacterial Tat system has a remarkable ability to transport folded proteins even enzyme complexes across the cytoplasmic membrane. It is structurally and mechanistically similar to the Delta pH-driven thylakoidal protein import pathway. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N- and C-termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N-terminus and the first cytoplasmic loop region of the Escherichia coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon.	1.89582e-81
NZ_CP015577.1|WP_038454589.1|1077366_1077918_+|single-stranded-DNA-binding-protein	gnl|CDD|236275	PRK08486, PRK08486, single-stranded DNA-binding protein; Provisional.	7.68527e-78
NZ_CP015577.1|WP_063999899.1|1068889_1069759_-|RsmB/NOP-family-class-I-SAM-dependent-RNA-methyltransferase	gnl|CDD|223222	COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis].	6.21227e-65
NZ_CP015577.1|WP_063999895.1|1065418_1065889_+|Sec-independent-protein-translocase-subunit-TatB	gnl|CDD|235219	PRK04098, PRK04098, Sec-independent protein translocase subunit TatB.	2.37335e-41
NZ_CP015577.1|WP_063999903.1|1073156_1073969_+|HDOD-domain-containing-protein	gnl|CDD|370050	pfam08668, HDOD, HDOD domain.	8.80201e-31
NZ_CP015577.1|WP_063999897.1|1066642_1067659_+|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl|CDD|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	3.4137e-173
NZ_CP015577.1|WP_063999905.1|1075886_1076879_+|DNA-polymerase-III-subunit-delta	gnl|CDD|236276	PRK08487, PRK08487, DNA polymerase III subunit delta; Validated.	1.63947e-112
NZ_CP015577.1|WP_063999906.1|1076965_1077352_+|30S-ribosomal-protein-S6	gnl|CDD|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	3.43228e-38
NZ_CP015577.1|WP_063999904.1|1073965_1075894_+|VacB/RNase-II-family-3'-5'-exoribonuclease	gnl|CDD|223631	COG0557, VacB, Exoribonuclease R [Transcription].	1.54843e-137
NZ_CP015577.1|WP_063999893.1|1063717_1064188_-|RNA-pyrophosphohydrolase	gnl|CDD|234820	PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed.	8.76949e-75
NZ_CP015577.1|WP_038454590.1|1077928_1078189_+|30S-ribosomal-protein-S18	gnl|CDD|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	2.32417e-35
NZ_CP015577.1|WP_038454592.1|1079507_1080179_+|response-regulator-transcription-factor	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	4.25761e-69
NZ_CP015577.1|WP_063999908.1|1080175_1081414_+|HAMP-domain-containing-histidine-kinase	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.56072e-21
NZ_CP015577.1|WP_038454584.1|1071990_1073013_-|ketol-acid-reductoisomerase	gnl|CDD|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
NZ_CP015577.1|WP_063999892.1|1062506_1063718_-|aspartate-kinase	gnl|CDD|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0

Protein sequences

>NZ_CP015577.1|WP_063999901.1|1070132_1070894_-|DNA-processing-protein-DprA
MDFITKLPSELDRLKKPVQKLYYKGNLELLNLPKVAIVGARKCTPYTKNLVISLASSLRKHGVCVLSGGAIGVDNYAHEGAFPLTIGIFGNGLDEIYPVQNAKMINQIYSNSLALSEYEPDFKAHSWSFLERNRIVVALSQAVVIAQADFKSGSMASARLALDMGIPLFVLPQRLEDSRGTNSLLAKNQANLIDDFDAFGAKFGSLYQEDDEILSFIKTNPSFDECYAKFGDKLYEYELESKIAIDGIYVRVV
>NZ_CP015577.1|WP_063999900.1|1069755_1070133_-|Holliday-junction-resolvase-RuvX
MIVGIDIGLKRIGVAVALSNTLVVPSEPILRKNRNQAASDTLKMLKEKGAKTLVVGLPKGGSCEEEMERRIKHFVGLIGFDGDIIYQDEAFSSSEASEIFSDSRDGRFDSVAAMIILKRYLKISL
>NZ_CP015577.1|WP_063999899.1|1068889_1069759_-|RsmB/NOP-family-class-I-SAM-dependent-RNA-methyltransferase
MSFRDDLATLVPKDKFDSVWNSFFEPKFVGFFINLLASEPKSVESELESLGIEFKQFNLPNFYICEPKFKEILSHSSLFNEGKIYIQNPSSYLSPLMLNPLSSDLVLDMCASPGGKSIVLANLMGGAKNLAVMEANKDRFFTLKMNLKKYGCNEAKTFNKDARSVSHTCANRFDKILLDVPCSSYSQFGINFKEKSYKEIKSIAKLQKQLLNSALTALKVGGSVVYSTCTFYEEENEEVIQNALNSKFKLKLEQINVGLKQAVSSEFGIRIIPDETMDAFFVSKIVKLA
>NZ_CP015577.1|WP_063999898.1|1067668_1068883_+|hypothetical-protein
MIIPLVIVTFIVNMLFASTAEDNKTDIAYTYIDKSINFQISSFFSSGFKGKEQIITDIMLCLFGLIAFIALMILLSKKIKAIRNKKTIVIETNKKPLYMAKINTDPTPSKLAPADITHRISFSFNVIYKKCAENNNTVIFDFDPSFHRHFLADHKSITYLIHFILEFCINLVKNSTIVVSFEPINLQKDIHTYNVSIKINQNIMEIENKIKDALLQRSNYLHYKKLVLASKIANNLGTHINYSNGYDEFEFDFDLNLIPQDQFVATKFIQTPDPTKAVIASDDMDSYNTLVKQLTFFGIKVEPINEWAIVKKHIITTIFNPNLVFIQAKILARLPQAELTELKEAKERKSLSIIVISNNTNYDKIINSLDFEDYKLKQPYTSDYLLAILNKTQKNAISKLWGGV
>NZ_CP015577.1|WP_063999897.1|1066642_1067659_+|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MNSIFDISSYDYELPKELIANAPTLPKEDARLLVYDRKNDKISHLKFKNLSEILPPCDIIFNDTKVVKARIFGKKDSGASIELLLNSPLNDNKFSCYIRGKVREQTRLYFGDLEAEVLELFEDGSRIVKFSQNQKELCVSELYEILEHIGHVPLPPYIKRADQKEDESWYQSIFAKNQGAVAAPTASLHFDEKILNELKQNHNISYITLHVGAGTFKGVEASDIREHKMHSEFYDIPNLTADLISSNKPILGVGTTVTRSVEYFARTKQKSGFCNLFLNPDNRPIRQNYLLTNFHLPKSTLIMLVASFIGLKKTMELYKIAVENRYKFYSYGDGMLII
>NZ_CP015577.1|WP_063999896.1|1065888_1066650_+|twin-arginine-translocase-subunit-TatC
MFEDLRPHLIELRKRLVISVIAVIVCFIICFNFWNPLLAYMTAPLKAVLPSGSNIIFTQVAEPFFTAMKVAFFAGLMISLPIIFWQFWLFVAPGLYDNEKKYVIPFVLSATVMFLAGAAFCYYFVVPVGFHFLITFGGELFQALPSIGNYVGFFTKLVVAFGISFELPVVTFFLAKLGMVDDKALKGFFRYAIVAIFIFAAIMTPPDILSQFMLAVPLIALYGLSILIAKMVNPAPKDDDEDDEEESQESKDE
>NZ_CP015577.1|WP_063999895.1|1065418_1065889_+|Sec-independent-protein-translocase-subunit-TatB
MFGMSFPEIIIVAVVAVIFLGPDKLPDAMVKIAKFFKVFKQTVNSAKSTFEQEVKIAELKEDAKKYKENFTEAAGAVRKKLTFEELDELKNTVASTKDGFNESLNSLKDELNIIKDPLNSLNSEVEFDHTPKQAQTIAQTTPATQPNANLETKKEA
>NZ_CP015577.1|WP_063999894.1|1064330_1065368_+|coproporphyrinogen-III-oxidase-family-protein
MQVYIHIPFCESKCPYCAFGSHSDKFKQTKSYFQALQKEIATSLQKVEKISTVFIGGGTPSSVGGEFYEEIFALLSSKLAKNAEISCEANPNSANQKWLENMRKFGVNRISFGVQSFDEKKLKMLGRIHSKQTAINALNLAKEVGFKNINLDIMYGTKLDTKKLLESELKIISNLKINHISAYSLMLEDNTPFKAKFKLKKDSPSLAKFLINSLESLGFKQYEISNFGKPCKHNLGYWSKKDYLGFGAYSVGTLGNQRFYSPSNLDEYIANPLQKRVENLSKNDRICEYIFLGLRSKVGVKLANLNNEQLEKVQILLKSKKIYQKNGRIFNTNFLLSDEISLFLT
>NZ_CP015577.1|WP_063999893.1|1063717_1064188_-|RNA-pyrophosphohydrolase
MEKEKNYRPNVAAVILSPSYPLECRIFIAQRHDIHGAWQFPQGGIDKGEVPKQALLRELEEEIGTNSVEILCEHPEWLSYDFPENIAKKMSPYDGQIQKYFLVRLKPKAKINLNTKHPEFNDYRFIKQEEVLDSVNHFKKAVYNKVLKYFKEEGFI
>NZ_CP015577.1|WP_063999892.1|1062506_1063718_-|aspartate-kinase
MLVVQKYGGTSVGTLERIEEVAKRVIETKKAGNDVVVVVSAMSGVTNKLIEYAEYFTKEAPCSKDMDMLLSAGERVTSALLSIALNEKGYPAISMSGRAAGIVTDDSHTKARIINIDSTNMRNELDSGKIVVVAGFQGVSKDGFVTTLGRGGSDLSAVAVAGALSADVCEIYTDVDGVYTTDPRIEPKAKKLDRISYDEMLELASMGAKVLQNRSVELAKKLNVNLVTKSSFNNNKGTLITGEANMENNMEQALISGIALDKNQARVTLRGVVDRPGVAASIFKKLAEKNINVDMIIQNTSHEDGTTSLGFTVLQNEMEAARSVVEGTAKSVEIDSDVVKVSVVGVGMKSHSGVASLAFSTLANEGINIQMISTSEIKISMIVAAKYGELAVRALHKAYELDI
>NZ_CP015577.1|WP_038454584.1|1071990_1073013_-|ketol-acid-reductoisomerase
MAITVYYDKDCDLSLIKSKKVAMIGFGSQGHAHAENLRDSGVEVVVGLNPKGKSWAKAEAKGFKVMSVGDATKYADVIMILTPDELQADIFKAEIEPNLSEGNAIAFGHGFNIHYGQITPPKGVDCIMIAPKAPGHTVRGEFVKGGGIPDLIAVAQDASGKAKDIALSYASAIGGGRTGIIETTFKDETETDLFGEQAVLCGGLCALINAGFETLTEAGYEPEMAYFECLHEMKLIVDLIYQGGMSDMRYSISNTAEYGDYVSGVRVVNESSKAAMKEILKEIQNGTFAKNFILERKAGYTKMNAERKISDASLLNQTGEKLRAMMPWINNGKLVNKDKN
>NZ_CP015577.1|WP_063999903.1|1073156_1073969_+|HDOD-domain-containing-protein
MNQAIYKSIKTLPPLDDTIIKIQQICSDPNGRMSDLVNIIQKDPMLTANILRSANSPLYGFSREITDVNRAVMLFGIATIRGFALSGAIKKTFSMDLKPYGITNEEFVQIASMQNALIFNWYNKVDSDLLKILAPASFMMEVGKIIIAKELIENDKTPFFQDKLKHINTPTDLSDLEVDMVGISNEDVAAKIFEQWNLETEMIDAIFYSNNPDDAPDYIKPCAIALKIVKNAINTFGKLTDENLQNTLTLLDTYGFEQAAFIEAVKKVKG
>NZ_CP015577.1|WP_063999904.1|1073965_1075894_+|VacB/RNase-II-family-3'-5'-exoribonuclease
MKEFLNSLLTGVDDKFIKVDEREILRVLETIKAVSKHKNKYYLNDGYICGKLDISSGGTGFLMPYDRRFKQDIIIENKNINGAHFGDIILAKLTNSKKARLHATVIAVLVMANETSVVYTKKFGMAIMGVNITNGLSIPLKASQKSLKTLPLGTVLKINNLDNDITEVLGTLDDPQVDEKISLAIYNKKDKFTKTCENEASSFGDSVDKSMYKERVDLTHLPFCTIDPIDAKDFDDAIYFDKENRVIYVAIADVSQYVAAYSALDKEAKFRGFSIYFPHKSVPMLPRSLSENICSLKPDCDRLAFVFKISLDSELNAVNEELFEAVIHSKKRFSYDEVDEILALKKQTDKEIQSWILPLFEITKKLKINRLKNGFDFRSKELRMTIDEGGHILATRFENETPSHALIEDCMLLANKAAAKRINKGVFRNHAPADLKKINLLLDDLALLGIEMVYESDLVSLIAKIQQKADEIGIREDVDKLIIKAQKRAQYSSTPNGHFGLGFELYTHFTSPIRRYSDLILHRLLKANLANNKKLFDYLLLDIENTCTKLNELEREADRVAWDFMDRKFARWAMQNIGQTFQCYISKTGNQTVAKLDGELKGARIFLENYNCPLLTKVIVKIKDVDLGSAKIIGKVIEKLDV
>NZ_CP015577.1|WP_063999905.1|1075886_1076879_+|DNA-polymerase-III-subunit-delta
MYKKELQNLLNSSAFPNFFLLFGNDSYQIEVFTKEVLAKFSDENLLSLYFDEYDFSVAKSHLSESSLFANTNLLHVKSDKKIPAKELKILIELCKKSKDNIFIFELHEGDTKLLFDTQKAFEQNFARFFAPSTPGEAVNLLSYHASKLGLSISGEALYQIYSLQNESLYLASSELNKIANLTKNVDNSMISKLVFSLNGVSFETFFNKIISVQNIKDDFFSYSNDSNFSEIMLVNSLYKAFLRLFKIQTYVKIYGKFDIKEAIGYTPPPNIANTLKNQALSMPIELYKDIFIKLNLIEYDLKTKKDLEKESFLLSCLLSIQNLISKNRKA
>NZ_CP015577.1|WP_063999906.1|1076965_1077352_+|30S-ribosomal-protein-S6
MKHYELLFILKPTLTEDEAKVKVDFIKEVITKNGGEIASVVEMGTRKLAYKIDKYERGTYVVIYFTAPTQLIAELVRNIRITEDVIRFLTVKYENKREIAAWDKLSKGLKLVPAKKELRAPEKPADAE
>NZ_CP015577.1|WP_038454589.1|1077366_1077918_+|single-stranded-DNA-binding-protein
MFNKVVLVGNLTRDIELRYAQSGSAIGNTAIAVTRKFSGANGEKREETCFIDITFFGRQAEIANQYLSKGSKVLVEGRLKLDQWQDQSGNARSKHSITVENMEMLGAQGGSQSQGTQNNYQNSSYQNGGYNNQYSNENSQQSYNRVEPSYAQKQQPKAMNEQPEEKIPEIDVDKYDNEETIPF
>NZ_CP015577.1|WP_038454590.1|1077928_1078189_+|30S-ribosomal-protein-S18
MAEKRKYSKKYCRYTEAKVEFIDYKDTTLLKYCLSERFKIMPRRLTGTSKKYQEMVEKAIKRARHVALIPYIVDRDSVVTNPFEGL
>NZ_CP015577.1|WP_063999907.1|1078225_1079323_-|molecular-chaperone-DnaJ
MEFDYYEILEISRDADGDTIKKAYRKLALKYHPDRNQGDKEAEEKFKKINEAYEVLSNEEKRGIYDRYGKDGLNSSGGFGGFEADFDLGDIFSSFFGGGFSGTKSKRSDKYNLDLEVGIRLEFYEAVFGCEKEIKYKYKTPCKTCNATGAKDGKKATCSHCGGRGKISQRQGFMSFVQACPYCSGTGEQIKEKCKDCSGNGYNEIEANITINIPEGVDDDMRIRVAGKGNIGTKYTGDLYVRISVKEDENFVRHGDDVYIEIPVFFTQAMLGESIKIPTLRGDTELKLGIGAKDKEQFVFENEGIKNTRTKKNGRLIAQISINTPKKLTDEQKELLEKLQNSFGIKSGESSDGEGIFDKIKSWFK
>NZ_CP015577.1|WP_038454592.1|1079507_1080179_+|response-regulator-transcription-factor
MINVLMIEDDPEFAQILSEYLLKFNIKVTNYEDPYLGLSAGIKNYDLLVLDLTLPGMDGLEVCKEIREKYDIPIIISSARSDVNDRVVGLQIGADDYLPKPYDPKEMHARIISLIRRYKKTNEIQEVATDTSFKVDEKRHEISYAGNILTLTPAEYEILEYLIKQHSFSVSREQLVYHCKSLKDKDSKSLDVIIGRLRTKIGDSSKSPKHIFSVRGIGYKLIG
>NZ_CP015577.1|WP_063999908.1|1080175_1081414_+|HAMP-domain-containing-histidine-kinase
MRYSLNTKITVIFAIGFTVICVLFFMFAKLQHDNMLDKIKENQYNSINWLLSLYKKSNMPENWEQYFKNFNLAYVKNPKMEEQILNDGDLMERVDTPIGMVETIFYDGNLFLRIKNQSVTIILENTLKGANDSLLIGFLITIALFVSLYISIFRSLVPLKKLRDDIRKFAAGNMDSVCHVNIAKGEDEIAEVAYEFNNAACKIKELIMSRQLFLRTIMHELKTPIGKGRIVSEMCEDETQKNRLIAIFERLNILINEFAKVEQLLSKSYALQYENYHFSLILDQTKDILLLDDFDDKISVDIQADPMLRVDFQLFSLALKNLIDNALKYSDNKKAIIVCDEEHICIKNSGKPLEKPIEHYKQAFIRDNSSKTAGMGLGLYIIEHICAMHKFGFTYKYIDGYHTFCIKFKKSK

Crispr_ID: NZ_CP015577_4

• CRISPR_ID: NZ_CP015577_4
• CRISPR_location: 1083029-1083110
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP015577_4

Consensus_repeat	Method
TGGCTCAGGTTTAGGTTGCTCTTTT	CRISPRCasFinder

spacers of NZ_CP015577_4

>4.1|1083054|32|NZ_CP015577|CRISPRCasFinder
TTTACCACTTTTGGAGTGACACTTTTTTGAGC

CRISPR arrays and Neighbor proteins around NZ_CP015577_4

CRISPR arrays

The CRISPR arrays of NZ_CP015577_4

>merge|NZ_CP015577|4|1083029-1083110|CRISPRCasFinder
TGGCTCAGGTTTAGGTTGCTCTTTTTTTACCACTTTTGGAGTGACACTTTTTTGAGCTGGCTCAGCTTTAGGTTGCTCTTTT

>NZ_CP015577|4|4|1083029-1083110|CRISPRCasFinder
TGGCTCAGGTTTAGGTTGCTCTTTT	TTTACCACTTTTGGAGTGACACTTTTTTGAGC
TGGCTCAGCTTTAGGTTGCTCTTTT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015577.1|WP_145914697.1|1081979_1082765_-|shikimate-dehydrogenase	unknown	unknown	gnl|CDD|234703
NZ_CP015577.1|WP_063999913.1|1086819_1087284_-|transcriptional-repressor	unknown	unknown	gnl|CDD|223806
NZ_CP015577.1|WP_063999907.1|1078225_1079323_-|molecular-chaperone-DnaJ	unknown	unknown	gnl|CDD|236757
NZ_CP015577.1|WP_038454595.1|1081413_1081983_+|recombination-protein-RecR	unknown	unknown	gnl|CDD|234616
NZ_CP015577.1|WP_063999919.1|1091891_1092503_+|ATP-phosphoribosyltransferase	unknown	unknown	gnl|CDD|234971
NZ_CP015577.1|WP_038454589.1|1077366_1077918_+|single-stranded-DNA-binding-protein	unknown	unknown	gnl|CDD|236275
NZ_CP015577.1|WP_063999912.1|1085307_1086807_-|lysine--tRNA-ligase	unknown	unknown	gnl|CDD|234778
NZ_CP015577.1|WP_063999905.1|1075886_1076879_+|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl|CDD|236276
NZ_CP015577.1|WP_063999910.1|1083510_1084053_-|DUF1882-domain-containing-protein	unknown	unknown	gnl|CDD|370215
NZ_CP015577.1|WP_063999917.1|1089957_1090959_+|PQQ-like-beta-propeller-repeat-protein	unknown	unknown	gnl|CDD|224437
NZ_CP015577.1|WP_063999906.1|1076965_1077352_+|30S-ribosomal-protein-S6	unknown	unknown	gnl|CDD|179034
NZ_CP015577.1|WP_063999904.1|1073965_1075894_+|VacB/RNase-II-family-3'-5'-exoribonuclease	unknown	unknown	gnl|CDD|223631
NZ_CP015577.1|WP_063999911.1|1084052_1085297_-|serine-hydroxymethyltransferase	unknown	unknown	gnl|CDD|237280
NZ_CP015577.1|WP_038454614.1|1091271_1091898_+|type-III-pantothenate-kinase	unknown	unknown	gnl|CDD|183981
NZ_CP015577.1|WP_038454590.1|1077928_1078189_+|30S-ribosomal-protein-S18	unknown	unknown	gnl|CDD|178997
NZ_CP015577.1|WP_038454592.1|1079507_1080179_+|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|223816
NZ_CP015577.1|WP_063999908.1|1080175_1081414_+|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl|CDD|223715
NZ_CP015577.1|WP_063999916.1|1089392_1089953_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP015577.1|WP_063999918.1|1090958_1091285_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP015577.1|WP_063999914.1|1087280_1087847_-|CvpA-family-protein	unknown	unknown	gnl|CDD|367140

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP015577.1|WP_145914697.1|1081979_1082765_-|shikimate-dehydrogenase	gnl|CDD|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	3.72421e-94
NZ_CP015577.1|WP_063999913.1|1086819_1087284_-|transcriptional-repressor	gnl|CDD|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	4.81119e-50
NZ_CP015577.1|WP_063999907.1|1078225_1079323_-|molecular-chaperone-DnaJ	gnl|CDD|236757	PRK10767, PRK10767, chaperone protein DnaJ; Provisional.	4.17796e-160
NZ_CP015577.1|WP_038454595.1|1081413_1081983_+|recombination-protein-RecR	gnl|CDD|234616	PRK00076, recR, recombination protein RecR; Reviewed.	6.14278e-79
NZ_CP015577.1|WP_063999919.1|1091891_1092503_+|ATP-phosphoribosyltransferase	gnl|CDD|234971	PRK01686, hisG, ATP phosphoribosyltransferase catalytic subunit; Reviewed.	8.29476e-103
NZ_CP015577.1|WP_038454589.1|1077366_1077918_+|single-stranded-DNA-binding-protein	gnl|CDD|236275	PRK08486, PRK08486, single-stranded DNA-binding protein; Provisional.	7.68527e-78
NZ_CP015577.1|WP_063999912.1|1085307_1086807_-|lysine--tRNA-ligase	gnl|CDD|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP015577.1|WP_063999905.1|1075886_1076879_+|DNA-polymerase-III-subunit-delta	gnl|CDD|236276	PRK08487, PRK08487, DNA polymerase III subunit delta; Validated.	1.63947e-112
NZ_CP015577.1|WP_063999910.1|1083510_1084053_-|DUF1882-domain-containing-protein	gnl|CDD|370215	pfam08966, DUF1882, Domain of unknown function (DUF1882). This domain is found in a set of hypothetical bacterial proteins.	7.01467e-37
NZ_CP015577.1|WP_063999917.1|1089957_1090959_+|PQQ-like-beta-propeller-repeat-protein	gnl|CDD|224437	COG1520, COG1520, FOG: WD40-like repeat [Function unknown].	0.00831184
NZ_CP015577.1|WP_063999906.1|1076965_1077352_+|30S-ribosomal-protein-S6	gnl|CDD|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	3.43228e-38
NZ_CP015577.1|WP_063999904.1|1073965_1075894_+|VacB/RNase-II-family-3'-5'-exoribonuclease	gnl|CDD|223631	COG0557, VacB, Exoribonuclease R [Transcription].	1.54843e-137
NZ_CP015577.1|WP_063999911.1|1084052_1085297_-|serine-hydroxymethyltransferase	gnl|CDD|237280	PRK13034, PRK13034, serine hydroxymethyltransferase; Reviewed.	0
NZ_CP015577.1|WP_038454614.1|1091271_1091898_+|type-III-pantothenate-kinase	gnl|CDD|183981	PRK13333, PRK13333, type III pantothenate kinase.	1.5033e-113
NZ_CP015577.1|WP_038454590.1|1077928_1078189_+|30S-ribosomal-protein-S18	gnl|CDD|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	2.32417e-35
NZ_CP015577.1|WP_038454592.1|1079507_1080179_+|response-regulator-transcription-factor	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	4.25761e-69
NZ_CP015577.1|WP_063999908.1|1080175_1081414_+|HAMP-domain-containing-histidine-kinase	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.56072e-21
NZ_CP015577.1|WP_063999914.1|1087280_1087847_-|CvpA-family-protein	gnl|CDD|367140	pfam02674, Colicin_V, Colicin V production protein. Colicin V production protein is required in E. Coli for colicin V production from plasmid pColV-K30. This protein is coded for in the purF operon.	2.42789e-23

Protein sequences

>NZ_CP015577.1|WP_145914697.1|1081979_1082765_-|shikimate-dehydrogenase
MNCYAVFGNPIAHSISPRLHNLAICGLGLDDFYGRVCLQDSSRLTNIFNKLSLKGANITIPFKEVAFAKCDELDQNAKKIGSVNTIVKKENKLYGFNTDAPGFMMAISDFGKVQNALVIGAGGTSKAISYILQSNGIDVDVVNRSQNRADEFKDYNFFSFDEYEPKSYDLVVNTTPAGLINNELPMQESILNSVFSNSKFAFDVIYGRQTPFLNLAKQKNLQVKDGADMLLFQAVLAFNLFYDNSFDLDVIKGYMKEAFAL
>NZ_CP015577.1|WP_038454595.1|1081413_1081983_+|recombination-protein-RecR
MQTTKIEKFDALVSCFEKIPGVGKKSALKYAYSVSLGDSFLGLNLAHSIEDAIRFLKHCSRCGGISENEICDICSDNARDKNTLCIVESPKDILTIEQSNSFNGVYFVFNNADRLEILQKNIIDNDIKEIIFALTPSINSDGLMLYIEDRLKNLDLNFTKIAQGIPTGVSLENIDMLSLTKAIKDRRTI
>NZ_CP015577.1|WP_063999908.1|1080175_1081414_+|HAMP-domain-containing-histidine-kinase
MRYSLNTKITVIFAIGFTVICVLFFMFAKLQHDNMLDKIKENQYNSINWLLSLYKKSNMPENWEQYFKNFNLAYVKNPKMEEQILNDGDLMERVDTPIGMVETIFYDGNLFLRIKNQSVTIILENTLKGANDSLLIGFLITIALFVSLYISIFRSLVPLKKLRDDIRKFAAGNMDSVCHVNIAKGEDEIAEVAYEFNNAACKIKELIMSRQLFLRTIMHELKTPIGKGRIVSEMCEDETQKNRLIAIFERLNILINEFAKVEQLLSKSYALQYENYHFSLILDQTKDILLLDDFDDKISVDIQADPMLRVDFQLFSLALKNLIDNALKYSDNKKAIIVCDEEHICIKNSGKPLEKPIEHYKQAFIRDNSSKTAGMGLGLYIIEHICAMHKFGFTYKYIDGYHTFCIKFKKSK
>NZ_CP015577.1|WP_038454592.1|1079507_1080179_+|response-regulator-transcription-factor
MINVLMIEDDPEFAQILSEYLLKFNIKVTNYEDPYLGLSAGIKNYDLLVLDLTLPGMDGLEVCKEIREKYDIPIIISSARSDVNDRVVGLQIGADDYLPKPYDPKEMHARIISLIRRYKKTNEIQEVATDTSFKVDEKRHEISYAGNILTLTPAEYEILEYLIKQHSFSVSREQLVYHCKSLKDKDSKSLDVIIGRLRTKIGDSSKSPKHIFSVRGIGYKLIG
>NZ_CP015577.1|WP_063999907.1|1078225_1079323_-|molecular-chaperone-DnaJ
MEFDYYEILEISRDADGDTIKKAYRKLALKYHPDRNQGDKEAEEKFKKINEAYEVLSNEEKRGIYDRYGKDGLNSSGGFGGFEADFDLGDIFSSFFGGGFSGTKSKRSDKYNLDLEVGIRLEFYEAVFGCEKEIKYKYKTPCKTCNATGAKDGKKATCSHCGGRGKISQRQGFMSFVQACPYCSGTGEQIKEKCKDCSGNGYNEIEANITINIPEGVDDDMRIRVAGKGNIGTKYTGDLYVRISVKEDENFVRHGDDVYIEIPVFFTQAMLGESIKIPTLRGDTELKLGIGAKDKEQFVFENEGIKNTRTKKNGRLIAQISINTPKKLTDEQKELLEKLQNSFGIKSGESSDGEGIFDKIKSWFK
>NZ_CP015577.1|WP_038454590.1|1077928_1078189_+|30S-ribosomal-protein-S18
MAEKRKYSKKYCRYTEAKVEFIDYKDTTLLKYCLSERFKIMPRRLTGTSKKYQEMVEKAIKRARHVALIPYIVDRDSVVTNPFEGL
>NZ_CP015577.1|WP_038454589.1|1077366_1077918_+|single-stranded-DNA-binding-protein
MFNKVVLVGNLTRDIELRYAQSGSAIGNTAIAVTRKFSGANGEKREETCFIDITFFGRQAEIANQYLSKGSKVLVEGRLKLDQWQDQSGNARSKHSITVENMEMLGAQGGSQSQGTQNNYQNSSYQNGGYNNQYSNENSQQSYNRVEPSYAQKQQPKAMNEQPEEKIPEIDVDKYDNEETIPF
>NZ_CP015577.1|WP_063999906.1|1076965_1077352_+|30S-ribosomal-protein-S6
MKHYELLFILKPTLTEDEAKVKVDFIKEVITKNGGEIASVVEMGTRKLAYKIDKYERGTYVVIYFTAPTQLIAELVRNIRITEDVIRFLTVKYENKREIAAWDKLSKGLKLVPAKKELRAPEKPADAE
>NZ_CP015577.1|WP_063999905.1|1075886_1076879_+|DNA-polymerase-III-subunit-delta
MYKKELQNLLNSSAFPNFFLLFGNDSYQIEVFTKEVLAKFSDENLLSLYFDEYDFSVAKSHLSESSLFANTNLLHVKSDKKIPAKELKILIELCKKSKDNIFIFELHEGDTKLLFDTQKAFEQNFARFFAPSTPGEAVNLLSYHASKLGLSISGEALYQIYSLQNESLYLASSELNKIANLTKNVDNSMISKLVFSLNGVSFETFFNKIISVQNIKDDFFSYSNDSNFSEIMLVNSLYKAFLRLFKIQTYVKIYGKFDIKEAIGYTPPPNIANTLKNQALSMPIELYKDIFIKLNLIEYDLKTKKDLEKESFLLSCLLSIQNLISKNRKA
>NZ_CP015577.1|WP_063999904.1|1073965_1075894_+|VacB/RNase-II-family-3'-5'-exoribonuclease
MKEFLNSLLTGVDDKFIKVDEREILRVLETIKAVSKHKNKYYLNDGYICGKLDISSGGTGFLMPYDRRFKQDIIIENKNINGAHFGDIILAKLTNSKKARLHATVIAVLVMANETSVVYTKKFGMAIMGVNITNGLSIPLKASQKSLKTLPLGTVLKINNLDNDITEVLGTLDDPQVDEKISLAIYNKKDKFTKTCENEASSFGDSVDKSMYKERVDLTHLPFCTIDPIDAKDFDDAIYFDKENRVIYVAIADVSQYVAAYSALDKEAKFRGFSIYFPHKSVPMLPRSLSENICSLKPDCDRLAFVFKISLDSELNAVNEELFEAVIHSKKRFSYDEVDEILALKKQTDKEIQSWILPLFEITKKLKINRLKNGFDFRSKELRMTIDEGGHILATRFENETPSHALIEDCMLLANKAAAKRINKGVFRNHAPADLKKINLLLDDLALLGIEMVYESDLVSLIAKIQQKADEIGIREDVDKLIIKAQKRAQYSSTPNGHFGLGFELYTHFTSPIRRYSDLILHRLLKANLANNKKLFDYLLLDIENTCTKLNELEREADRVAWDFMDRKFARWAMQNIGQTFQCYISKTGNQTVAKLDGELKGARIFLENYNCPLLTKVIVKIKDVDLGSAKIIGKVIEKLDV
>NZ_CP015577.1|WP_063999910.1|1083510_1084053_-|DUF1882-domain-containing-protein
MQSTDLTLIKMITSHYFIKRDTIVNKIEYKGRYFFDKFERVDEPLNYSVQKEHGEGKIIVAHSLINKDDKVENIVFDYNGRTPERFWHRAQLLLREEGFINFTAYQSKTPGHLHLYVHKGHTTLNEGYQIANKLSIMLAQRLPQEWRMFPSLEMPREFNILALPYELYQKERGASWSKHM
>NZ_CP015577.1|WP_063999911.1|1084052_1085297_-|serine-hydroxymethyltransferase
MSLENFDKDIYSLVNKELQRQCDHLEMIASENFTYPDVMEVMGSVLTNKYAEGYPGKRYYGGCEFVDEIEQIAIDRCKKLFGCEFANVQPNSGSQANQGVYGAFLKPGDKILGMDLSHGGHLTHGSKVSSSGKNYESFFYGVELDGRINYDKVEEIANITKPKMIVCGASAYAREIDFKRFREIADSVGAYLFADVAHIAGLVVAGEHNSPFPHCHVVSSTTHKTLRGPRGGIIMTNDEEFAKKINSSIFPGIQGGPLMHVIAGKAVGFKHNLSDEWKVYAKQVKANAKKLGEVLMARGYNLVSGGTDNHLVLVSFLNKEFSGKDADIALGNAGITVNKNTVPGETRSPFITSGIRVGSPALTARGMKEGEFELIASRIADVLDDINNTDLQAKIKAELKDLAHQFIIYDKAMF
>NZ_CP015577.1|WP_063999912.1|1085307_1086807_-|lysine--tRNA-ligase
MIFENEQEVTRLAKADELRSMGVNPYPHFLKKDMSISEFKNKFAYIKDIESDEKKADEEVTISGRLKLKRVAGKSTFANMEDENDNIQIYYSLGSIGEEDYTKFKKNLEVGDVILVTGYAFITKTGEFSIHASKIVLASKAISPLPEKFHGLTDVEIRYRQRYLDMIMDSDVRSDFAKRSLIVSTIRRFFEDRGFLEVETPMMHPIAGGANAKPFITHHNALDVDRYLKIAPELYLKRLVVGGMEAVFEMNRCFRNEGMDLTHNPEFTSIEFYWAWHDYFEVMDLTEELFATLLDKLNLPKIIEFDGKMIDFSKPFARVNYIDAIVEIGGISRDIATNKEKILAKLKEDKFEANDKLDLGHLQAELFDNYVEDKLINPTFIVDFPISISPLSRRSDTDSNVAERFELFIAGRELANAFNELNDPIDQYGRFKAQIDAKNAGDDEAHEMDEDYCQALGYAMPPTAGWGLGVDRLVMLLLNKKSIRDVILFPAMKPLKNEN
>NZ_CP015577.1|WP_063999913.1|1086819_1087284_-|transcriptional-repressor
MNGIDNIEYDTLLEKFKKVLRDNGLKYTKQREILLKTLYNNSDHFTPEQLYLYIKESHPDLNLGIATVYRTLNLLEESGMVTSISFGTQGKKFELATKPHHDHMICRMCGNIIEFEDPTIEKRQSIIAKDHGFKLTGHMMQLYGICQSCNKKKI
>NZ_CP015577.1|WP_063999914.1|1087280_1087847_-|CvpA-family-protein
MDLITWFDIIVIALVVILGIKGIINGLVKEVFGLIGLIGGVIIASRNANLVGQLISDNIYKLSESSSFFFGFLTTLVIFWLLCLLAGNLFSKMLSMSGLGFIDKILGFFVGSAKIFLVFSIFAAIVSNISILSQKVEPYFENSKVYPVLLASGKFIMNVDLNKTKQEVEQRLDIPTDNNETNSTKDMQ
>NZ_CP015577.1|WP_063999916.1|1089392_1089953_+|hypothetical-protein
MAIKEDINYIKNEISSQEQFLENAIRSERFLKKNKKIIIAIVVIALFTIFVYVIKTIAYEKNLETTNQAYKALLQNPNDSAAQSILKEKSPSLFALYAIKNANDTNSTALIDEALNMQIDPLLKEVINSAKNQNTDGLMSSYAALISGYELLKQNKIEEAKIEFSKIPQNSPLEGISKNLQHYQGK
>NZ_CP015577.1|WP_063999917.1|1089957_1090959_+|PQQ-like-beta-propeller-repeat-protein
MKYILAICIAFGLLIFSGCSTKRKYFEPQNIDKEMSYSQNLPSSIKYTARDGATLEDGQIITKTGLKNTVKLEENDRFIGEFDGKFIVSNLDGTLKILDLQNTVYERKFPQAIVAASLSGSKLAALSSRNTIYLVDIYRDSVDLEYVVGDTYAQDSRTAAPIFLSSLIVYPTLDGKIMIVDKTSGNIIRDAVVSSEPFFNNIIYLDVFEDKMFAATATKVMMISPSLTKEYSGQIKDVILYKNRIYVLLKDGFIEAMDLNLNSIAKTEFKFAIFSNIIPKGDYLYIIEKTGYLLKTNLDLTSQEVIELNGEIEDKSFASKNTFYYDDKILKLD
>NZ_CP015577.1|WP_063999918.1|1090958_1091285_+|hypothetical-protein
MDNQISEIFSLNKILLRNLKTLDFSEFSKKRNYQLFLGIDTNSFYTLVFLRTAKSKVFNKEIGDLATVCKEIENKFDTLIKRRILIYNSQICQKVISANKDWKFYAFM
>NZ_CP015577.1|WP_038454614.1|1091271_1091898_+|type-III-pantothenate-kinase
MLLCDIGNTTATFYKDRKIWSLDIDKFRLFTPDEKVYYISVNDNLEDILSNDIFVNLEPYIKFSTTYLGLGIDRAAVCYSIKTGFIVDAGSAITMDLMSNNIHLGGFILPGITTTLNSLKKISNRLDKPLNSQIDLDCIPQKTADAISYGIIKPIILLVEELSNDKPIYFTGGDGEFLSRFFKNAIYDRALIFRGMLKAIDENKEIIC
>NZ_CP015577.1|WP_063999919.1|1091891_1092503_+|ATP-phosphoribosyltransferase
MLKVALPKGRIAEDTLEIFTKIFGNEFKFEDRKLTMTQGNFEFLMVRNQDIPTYVTEGAADIGVVGLDVLEEHNADVLRLLDLKLGKCKVCIGIKNEDKLDYSKPEIKIATKMPNITRNYFATKATAVKIIKLYGSIELAPIVGLSDAIVDIVETGTTMKQNGLKVAEAIMDSSAHLIANKNSFIVKKEEILSLYHKINDLIN

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP015577_1	1.12|553269|33|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT	553269-553301	33	NZ_CP015577.1	487643-487675	0	1.0
NZ_CP015577_2	2.1|601261|33|NZ_CP015577|CRT	601261-601293	33	NZ_CP015577.1	560355-560387	1	0.97
NZ_CP015577_2	2.8|601261|34|NZ_CP015577|PILER-CR	601261-601294	34	NZ_CP015577.1	560354-560387	1	0.971

1. spacer 1.12|553269|33|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT matches to position: 487643-487675, mismatch: 0, identity: 1.0

aaaatcttgctgtaatttttcttgaaaatccac	CRISPR spacer
aaaatcttgctgtaatttttcttgaaaatccac	Protospacer
*********************************

2. spacer 2.1|601261|33|NZ_CP015577|CRT matches to position: 560355-560387, mismatch: 1, identity: 0.97

gattttgatactcttaaaaaaagtcgtattttg	CRISPR spacer
gattttgatacgcttaaaaaaagtcgtattttg	Protospacer
*********** *********************

3. spacer 2.8|601261|34|NZ_CP015577|PILER-CR matches to position: 560354-560387, mismatch: 1, identity: 0.971

gattttgatactcttaaaaaaagtcgtattttga	CRISPR spacer
gattttgatacgcttaaaaaaagtcgtattttga	Protospacer
*********** **********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP015577_1	1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT	553204-553238	35	NC_011783	Borreliella burgdorferi ZS7 plasmid ZS7_lp25, complete sequence	17322-17356	9	0.743
NZ_CP015577_1	1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT	553204-553238	35	NC_011783	Borreliella burgdorferi ZS7 plasmid ZS7_lp25, complete sequence	11523-11557	9	0.743
NZ_CP015577_1	1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT	553204-553238	35	NC_017420	Borreliella burgdorferi N40 plasmid N40_lp25, complete sequence	17088-17122	9	0.743
NZ_CP015577_1	1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT	553204-553238	35	NC_017420	Borreliella burgdorferi N40 plasmid N40_lp25, complete sequence	11301-11335	9	0.743
NZ_CP015577_1	1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT	553204-553238	35	NC_001850	Borreliella burgdorferi B31 plasmid lp25, complete sequence	17286-17320	9	0.743
NZ_CP015577_1	1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT	553204-553238	35	NC_001850	Borreliella burgdorferi B31 plasmid lp25, complete sequence	11499-11533	9	0.743
NZ_CP015577_1	1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT	553204-553238	35	NZ_CP017212	Borreliella burgdorferi strain B331 plasmid B331_lp25, complete sequence	17086-17120	9	0.743
NZ_CP015577_1	1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT	553204-553238	35	NZ_CP017212	Borreliella burgdorferi strain B331 plasmid B331_lp25, complete sequence	11300-11334	9	0.743
NZ_CP015577_1	1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT	553204-553238	35	NC_015922	Borreliella bissettii DN127 plasmid lp25, complete sequence	11775-11809	9	0.743
NZ_CP015577_1	1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT	553204-553238	35	NC_017409	Borreliella burgdorferi JD1 plasmid JD1 lp25, complete sequence	9664-9698	9	0.743
NZ_CP015577_1	1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT	553204-553238	35	NZ_CP015804	Borrelia mayonii strain MN14-1539 plasmid lp25	11267-11301	9	0.743
NZ_CP015577_1	1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT	553204-553238	35	NZ_CP015789	Borrelia mayonii strain MN14-1420 plasmid lp25, complete sequence	11267-11301	9	0.743
NZ_CP015577_1	1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT	553204-553238	35	NZ_CP031401	Borreliella burgdorferi strain MM1 plasmid plsm_lp25, complete sequence	11003-11037	9	0.743
NZ_CP015577_1	1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT	553204-553238	35	MN693032	Marine virus AFVG_117M42, complete genome	1951-1985	10	0.714
NZ_CP015577_1	1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT	553204-553238	35	MN693032	Marine virus AFVG_117M42, complete genome	62208-62242	10	0.714

1. spacer 1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT matches to NC_011783 (Borreliella burgdorferi ZS7 plasmid ZS7_lp25, complete sequence) position: , mismatch: 9, identity: 0.743

ttcctttattttttacactcgttaaattcttctaa	CRISPR spacer
taattatattttttacactccttatattctttcat	Protospacer
*  .* ************** *** ******..* 

2. spacer 1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT matches to NC_011783 (Borreliella burgdorferi ZS7 plasmid ZS7_lp25, complete sequence) position: , mismatch: 9, identity: 0.743

ttcctttattttttacactcgttaaattcttctaa	CRISPR spacer
taattatattttttacactccttatattctttcat	Protospacer
*  .* ************** *** ******..* 

3. spacer 1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT matches to NC_017420 (Borreliella burgdorferi N40 plasmid N40_lp25, complete sequence) position: , mismatch: 9, identity: 0.743

ttcctttattttttacactcgttaaattcttctaa	CRISPR spacer
taattatattttttacactccttatattctttcat	Protospacer
*  .* ************** *** ******..* 

4. spacer 1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT matches to NC_017420 (Borreliella burgdorferi N40 plasmid N40_lp25, complete sequence) position: , mismatch: 9, identity: 0.743

ttcctttattttttacactcgttaaattcttctaa	CRISPR spacer
taattatattttttacactccttatattctttcat	Protospacer
*  .* ************** *** ******..* 

5. spacer 1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT matches to NC_001850 (Borreliella burgdorferi B31 plasmid lp25, complete sequence) position: , mismatch: 9, identity: 0.743

ttcctttattttttacactcgttaaattcttctaa	CRISPR spacer
taattatattttttacactccttatattctttcat	Protospacer
*  .* ************** *** ******..* 

6. spacer 1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT matches to NC_001850 (Borreliella burgdorferi B31 plasmid lp25, complete sequence) position: , mismatch: 9, identity: 0.743

ttcctttattttttacactcgttaaattcttctaa	CRISPR spacer
taattatattttttacactccttatattctttcat	Protospacer
*  .* ************** *** ******..* 

7. spacer 1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017212 (Borreliella burgdorferi strain B331 plasmid B331_lp25, complete sequence) position: , mismatch: 9, identity: 0.743

ttcctttattttttacactcgttaaattcttctaa	CRISPR spacer
taattatattttttacactccttatattctttcat	Protospacer
*  .* ************** *** ******..* 

8. spacer 1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017212 (Borreliella burgdorferi strain B331 plasmid B331_lp25, complete sequence) position: , mismatch: 9, identity: 0.743

ttcctttattttttacactcgttaaattcttctaa	CRISPR spacer
taattatattttttacactccttatattctttcat	Protospacer
*  .* ************** *** ******..* 

9. spacer 1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT matches to NC_015922 (Borreliella bissettii DN127 plasmid lp25, complete sequence) position: , mismatch: 9, identity: 0.743

ttcctttattttttacactcgttaaattcttctaa	CRISPR spacer
taattatattttttacactccttatattctttcat	Protospacer
*  .* ************** *** ******..* 

10. spacer 1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT matches to NC_017409 (Borreliella burgdorferi JD1 plasmid JD1 lp25, complete sequence) position: , mismatch: 9, identity: 0.743

ttcctttattttttacactcgttaaattcttctaa	CRISPR spacer
taattatattttttacactccttatattctttcat	Protospacer
*  .* ************** *** ******..* 

11. spacer 1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015804 (Borrelia mayonii strain MN14-1539 plasmid lp25) position: , mismatch: 9, identity: 0.743

ttcctttattttttacactcgttaaattcttctaa	CRISPR spacer
taattatattttttacactccttatattctttcat	Protospacer
*  .* ************** *** ******..* 

12. spacer 1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015789 (Borrelia mayonii strain MN14-1420 plasmid lp25, complete sequence) position: , mismatch: 9, identity: 0.743

ttcctttattttttacactcgttaaattcttctaa	CRISPR spacer
taattatattttttacactccttatattctttcat	Protospacer
*  .* ************** *** ******..* 

13. spacer 1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031401 (Borreliella burgdorferi strain MM1 plasmid plsm_lp25, complete sequence) position: , mismatch: 9, identity: 0.743

ttcctttattttttacactcgttaaattcttctaa	CRISPR spacer
taattatattttttacactccttatattctttcat	Protospacer
*  .* ************** *** ******..* 

14. spacer 1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT matches to MN693032 (Marine virus AFVG_117M42, complete genome) position: , mismatch: 10, identity: 0.714

ttcctttattttttacactcgttaaattcttctaa	CRISPR spacer
aaagtagatttttgaccctcgttaaattcttctct	Protospacer
    *  ****** ** ****************  

15. spacer 1.11|553204|35|NZ_CP015577|PILER-CR,CRISPRCasFinder,CRT matches to MN693032 (Marine virus AFVG_117M42, complete genome) position: , mismatch: 10, identity: 0.714

ttcctttattttttacactcgttaaattcttctaa	CRISPR spacer
aaagtagatttttgaccctcgttaaattcttctct	Protospacer
    *  ****** ** ****************