CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011387	Deinococcus puniceus strain DY1, complete genome	2 crisprs	DEDDh,csa3,cas3	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011387_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011387_1

111835-111929

Orphan

Consensus_repeat	Method
TGTTTCACCGTCAAGTTTCCCGTGAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011387_1

>merge|NZ_CP011387|1|111835-111929|CRISPRCasFinder
TGTTTCACCGTCAAGTTTCCCGTGAAACGTGACTCAGGTCAAGCACCATCTATTCGCCATCCAAGTTTGTTTCACCGTCAAGTTTCCCGTGAAAC

>NZ_CP011387|1|1|111835-111929|CRISPRCasFinder
TGTTTCACCGTCAAGTTTCCCGTGAAAC	GTGACTCAGGTCAAGCACCATCTATTCGCCATCCAAGTT
TGTTTCACCGTCAAGTTTCCCGTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011387.1\|WP_064013542.1\|115965_117120_+\|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha	unknown	unknown	gnl\|CDD\|223997
NZ_CP011387.1\|WP_064013541.1\|113835_115437_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|223594
NZ_CP011387.1\|WP_064013535.1\|106412_107405_+\|YpdA-family-putative-bacillithiol-disulfide-reductase	unknown	unknown	gnl\|CDD\|188533
NZ_CP011387.1\|WP_157451029.1\|121192_123208_-\|transketolase	unknown	unknown	gnl\|CDD\|223100
NZ_CP011387.1\|WP_064013546.1\|120130_121045_-\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|187613
NZ_CP011387.1\|WP_064013540.1\|111933_113739_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl\|CDD\|235362
NZ_CP011387.1\|WP_082869584.1\|101536_102391_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|223810
NZ_CP011387.1\|WP_064015749.1\|100617_101439_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|211337
NZ_CP011387.1\|WP_064013538.1\|110699_111437_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|234637
NZ_CP011387.1\|WP_157451030.1\|124254_125360_-\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NZ_CP011387.1\|WP_082869585.1\|118150_118396_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011387.1\|WP_082869790.1\|107775_108945_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225341
NZ_CP011387.1\|WP_064013537.1\|109867_110617_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP011387.1\|WP_064013547.1\|123297_124203_-\|pyridoxal-kinase	unknown	unknown	gnl\|CDD\|235592
NZ_CP011387.1\|WP_157451028.1\|102463_104248_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011387.1\|WP_064013545.1\|118470_120015_+\|2-oxo-acid-dehydrogenase-subunit-E2	unknown	unknown	gnl\|CDD\|237001
NZ_CP011387.1\|WP_064013543.1\|117116_118130_+\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
NZ_CP011387.1\|WP_064013536.1\|109026_109884_-\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NZ_CP011387.1\|WP_064013534.1\|104698_106108_-\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NZ_CP011387.1\|WP_064015751.1\|104398_104659_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP011387.1\|WP_157451030.1\|124254_125360_-\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.27851e-25
NZ_CP011387.1\|WP_064013541.1\|113835_115437_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|223594	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones].	1.8085e-85
NZ_CP011387.1\|WP_064013534.1\|104698_106108_-\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NZ_CP011387.1\|WP_157451029.1\|121192_123208_-\|transketolase	gnl\|CDD\|223100	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism].	0
NZ_CP011387.1\|WP_064013546.1\|120130_121045_-\|glucose-1-dehydrogenase	gnl\|CDD\|187613	cd05355, SDR_c1, classical (c) SDR, subgroup 1. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.09615e-171
NZ_CP011387.1\|WP_064013540.1\|111933_113739_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NZ_CP011387.1\|WP_064013538.1\|110699_111437_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	1.10824e-68
NZ_CP011387.1\|WP_064015749.1\|100617_101439_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|211337	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA. This group consists of eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA, Pseudomonas aeruginosa truA and human pseudouridine synthase-like 1 (PUSL1). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruA makes psi38/39 and/or 40 in tRNA. psi38 and psi39 in tRNAs are highly phylogenetically conserved. P. aeruginosa truA is required for induction of type III secretory genes and may act through modifying tRNAs critical for the expression of type III genes or their regulators.	2.15127e-101
NZ_CP011387.1\|WP_082869584.1\|101536_102391_+\|M23-family-metallopeptidase	gnl\|CDD\|223810	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane].	6.81826e-43
NZ_CP011387.1\|WP_082869790.1\|107775_108945_+\|hypothetical-protein	gnl\|CDD\|225341	COG2720, COG2720, Uncharacterized vancomycin resistance protein [Defense mechanisms].	8.22372e-101
NZ_CP011387.1\|WP_064013537.1\|109867_110617_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.64879e-82
NZ_CP011387.1\|WP_064013547.1\|123297_124203_-\|pyridoxal-kinase	gnl\|CDD\|235592	PRK05756, PRK05756, pyridoxal kinase PdxY.	2.19539e-158
NZ_CP011387.1\|WP_064013545.1\|118470_120015_+\|2-oxo-acid-dehydrogenase-subunit-E2	gnl\|CDD\|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	2.53031e-155
NZ_CP011387.1\|WP_064013543.1\|117116_118130_+\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	0
NZ_CP011387.1\|WP_064013536.1\|109026_109884_-\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	1.49203e-74
NZ_CP011387.1\|WP_064013542.1\|115965_117120_+\|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha	gnl\|CDD\|223997	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion].	1.16595e-146
NZ_CP011387.1\|WP_064013535.1\|106412_107405_+\|YpdA-family-putative-bacillithiol-disulfide-reductase	gnl\|CDD\|188533	TIGR04018, thioredoxin_reductase, putative bacillithiol system oxidoreductase, YpdA family. Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete. [Unknown function, Enzymes of unknown specificity].	1.55997e-167

>NZ_CP011387.1|WP_064013538.1|110699_111437_-|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MTPEGQDLLLRGGDALGIDLTPHLPAFAELLRLLLEGSARTNLTALKEEPDIILKHFVDSLTCLQGGYLHGVQRVIDLGTGAGFPALPLAIVQPELQLVPVDSTRKKIEFVRATAAALGLTNVNPLVGRAEELGQDPEHRQHYDRVVVRAVAALPILAELALPLLKENGLLVAQKGPISSEELNAGRRASGEVGGKVQVVDPFTLPILGDARTLIVIEKLKPTPAKYPRKPGVPNHQPLFWNGNT
>NZ_CP011387.1|WP_064013537.1|109867_110617_-|ParA-family-protein
MKTIGVVNQKGGVGKTTTAINLAAYLAAGGRRVLLLDMDPQGNATSGLGLRGATEGLYEALGEPGRVAEWTCTTDQAGLDVLPATPDLAGAGVELAEDPDALTRLLASVKGYDLVLIDAPPSLGPLTVNVLAAADALLIPLQAEYYALEGLAGMMETVERIQGGLNPRLKVLGVALTMFDGRTNLAQEVETMVRQHFGELVFWSVIPRNVKLSEAPSFAKPINAFAPLSSGAAAYKRLAEEVMQRVEKI
>NZ_CP011387.1|WP_064013536.1|109026_109884_-|ParB/RepB/Spo0J-family-partition-protein
MSKKSSLGRGLDALLGKPVAESGSVTGIQTLRLDRIVQAAYQPRQVFAAEGLAELAQSIREKGVLQPLLVRPRGDAFEIVAGERRWRASQLAGLTELPVIIRDLGDREALEIAIVENLQREDLGPLEEARAYQALLDHGLNQEGVAQAVGKGRSTVSNALRLLTLGDAALRALDNGEITASHARAVLAQPAKDRDWALEQIVSRGLNVRDAEALKREVKAEKPAAHTPIPVNPPRTYRQLELDLSRRTGTRVRITGEDKGRVELNYGSREELDRILELLGFTAEE
>NZ_CP011387.1|WP_082869790.1|107775_108945_+|hypothetical-protein
MPTPPTEPAPQPAPTPPAPSVKVTPPRTAPLLITVRAEWPALVDGKKTTLPFTRTLTISSARVNELRARGGSISASLEADLKKFVAELPSKPENARFEQLWDGWSIVQRNGLIINMDKTRASIEAVLKNPKGVQASVIVSGQVAPERTLNFFASRGITQHLGTGETSYYGSSPARVTNIHVAASRFKDRLFEGKSFSFNQAVGPISTQTGFVTGLVIAGERTVDGVGGGVCQVSTTVFRTLYGAGLTATQRQNHSYQVRYYDPSGLDAAVYQPTLDLKFANDTGGALWFQTDWNDEEARLSIAVFGKARDYTVEVGTPRTLNTRASPADRLISDASLPAGQRKQVEWAAPGATIEVTRKFVRNGQAFKQDILRSVYRPWPNIFLVGTRR
>NZ_CP011387.1|WP_064013535.1|106412_107405_+|YpdA-family-putative-bacillithiol-disulfide-reductase
MIDVAIVGAGPVGLAAAIACKRAGLSYVVLEKGCVVNAIFEYPTYMTFFTTAPELEIGNHPMVTGHDKPDRRDALMYYRLVTQREELNVEQYTTVTEIHAAPAGFTLEIEARDGTPGVVEARRVIVATGYYDNPLHLGIPGEDGDNVSHYYTEAHPFMGLNVTVIGAGNSAADAALDLWRGGAKVTMVVRAPELKSTIKYWVRPDLENRIKEGSIAAHFNSRVTEILPDMARIERADGSTFDLPTHFTFALTGYRPDLSFLDGLNLAQQPDECLVLSESYESSVPGLFVVGSAGFAGKTNQVFIENGRHHAIAAVAEIGRQLEHSALIGR
>NZ_CP011387.1|WP_064013534.1|104698_106108_-|class-II-fumarate-hydratase
MTDTRQPATRTESDTMGKLEVASDRYWGAQTERSIHNFPIGRDTFVWGRPVIQALGILKKGAAQANADLGELPQDVADLIVRAADEVIAGTLDSHFPLVVFQTGSGTQSNMNANEVISNRAIELAGGVLGSKAPVHPNDHVNRGQSSNDTFPTAMHIAVVLELNHRLYGSVGKLRDTLHAKAEQHAGLVKVGRTHLQDATPITLGQEIGGWVAQLDYALAEVKHAEAGLYDLAIGGTAVGTGLNAHPKFGDLAAQKYEAETGFPFRSAENKFAALSAHDALVQTSAALRTLAGALMKMANDVRWLASGPRNGIGEIVIPENEPGSSIMPGKVNPTQSEALTMVATRVFGNDATVAFAGSQGNFQLNVFKPVMVHAVLESIRLISDASLAFNDNCAVGIEPNLAKIEENLSINLMQVTALNKHIGYDKAAAIAKKAHKEGSSLREAALALGYVTDEEFTAWVIPLEMTHN
>NZ_CP011387.1|WP_064015751.1|104398_104659_+|hypothetical-protein
MEARDNGDGLTSAALSAHLNLLQTQPGFVGAELLVSPAQPGLLLIASRWACPAPQLALPAGAKSWVFEVQESRGAVSGEWEGRGGR
>NZ_CP011387.1|WP_157451028.1|102463_104248_-|hypothetical-protein
MSLSPSPTEFDDVPVSPAVIQWASDWRVQALRLLGTGRIQQALWPMARANAGGDPWARATLGHMYALLGLGDSAERHEAAALSHLTQQSLGGDASAEAALACARAWAALREAATRPQQNNWQRAFQCVQDASTSPSPLAPHLWLALARGLREAGEAAQAARALQAALTAPGNTAQSDTAPGDTAQGDTDAALPAEVWAEVWTAEWALTALLTSESGSVTSEAGSADRPAQQHRQTPTPDAPGPDARALKALAALHRHATVGTLSELAEALEAVERVDLRRSCAFALAERLSVLGAHRAALAAMHAYPLFPRATGPRDWACRGILLRRQHHDPPALRDLDAALSDPDSLPPPLRVRVGLHRADLLYRQNRVPEALSGLREALPALLELTAPWQLAPDLAELTTLMQLAALEPDLSGWAELAYGAANRRGSAPAEASAGWTLDTLGQATLRRSGQPVPLRWPETSLLIAYLTLQGEVTRTQAELDLFPDLPPKLALALFRQALAELRTHFGPDAVRVGGPRRSPTYTLLVPVALDVQRPSAVAAAPGLFLPHLPHTGWVAERRTLHRLTDQHFVEQQTTKQAKQSLFKRRMDTDYI
>NZ_CP011387.1|WP_082869584.1|101536_102391_+|M23-family-metallopeptidase
MSLLNQVSRALCLPIVAALMLGSASSAATYRIKPGDTLSGIAVRAGVTVAQLRAANPALRDANSVQAGRVLTLPGRVLPATRYRVKAGENLTVIAQRVGLTLTQLVRANPKYAGGKPVWVGAIIQIPARTVAARTGTAATVRPAAIRVNPVSPASSGAWLWPVAGYRTVSSDYGSRVLDGVREMHYGIDIVAPTGTLVRAARSGRVLESRPDFDRGWGWTVVLEHPDGWITRYAHLSANLARQGEVVTRGQPIGRVGNTGRSTGPHLHFGTYLRWSPRDPLSLY
>NZ_CP011387.1|WP_064015749.1|100617_101439_-|tRNA-pseudouridine(38-40)-synthase-TruA
MPDAPLFAPPAGFIRLRLTVAYHGAEFAGWQSQPQTRTVQDTLHEAFARLGAGESARPVAAGRTDAGVHADAMPVHIDVPDSFRLAPQRLARALNAHLPSDLAVLDAAPAPANFHARFRCTGRAYIYRLWTAPQRHPMWADRALHVSAPLNAEAMNAAAAALIGTHDFAAFATREDRHTVRELRELEVRRTSELWEIHVQGESFLRHMVRGLVGTLLLAGQGQLSPAQTADILSGGERARAGANVPAHGLTFSGAEYGKVVYRSQSTSLFSSF
>NZ_CP011387.1|WP_064013540.1|111933_113739_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MSGVQTGWNVIVIGGGHAGLEAAWAAAKYARVALLVGNPSTIGRMPCNPAVGGPGKSQLVFEVQALGGLMGQLADATAIHTRVLNASKGPAVQSLRVQNERDAYAEHAQDVILGHAGIDVVRGEAADLESDGRGGWWVITTDGRRLAARSVVIAAGTFMRAVTWYGRQSRPEGRQGEPPSRFLSEPLARAGHVLKRYKTGTPPRVRADAVRFEDLLEIPADPHPRGFTGTPGPRAMRSPTWQTYTTPETHRLIQENLHESPMYAGDIEGLGPRYCPSIEDKVVRFAHHDRHLLFVEPDGIETSEVYLQGFSSSLPPHLQDRLVRTLPGFEQAVIQRYAYAVEYDVVDSTELTLNLESRQLPGVFTAGQINGTSGYEEAAAQGLVAGTAAARRAQGLPEQFIGRETGYMGVMLDDLVFKGSDEPYRMMTSRVEHRLLMRQDNADERLTPLGHELGLVNDAERARVAAKYGRVADAVAELGRQRVQGHTGDAWLRRPEFTLPDVEALGFTLPVLDASEREALEIRVKYAGYIARAETQLKSEGRARELSLADVDFAGIAALSNEAREKLGRVRPLTVEQAARVPGVRHADISALLVHLKRQSA
>NZ_CP011387.1|WP_064013541.1|113835_115437_+|aminotransferase-class-V-fold-PLP-dependent-enzyme
MDFATLRADLIGTDTLIRTPFGPRRVTYADYVASGRALRSIEERVQTLALPLYANTHTEDSATGAQTTHLAHQAAEYVKGQLGGDATCKLVYCGSGSTAAVRRLQDILGLSVPEAHRAAILNTMPAHERPVVFVGPYEHHSNEVSWRETLAEVVEVPLCERGNLDLDALVTLLKAPEFVRRPKIGSFSAASNVTGLLTDTRTVARILHANGAFACFDFAASGPYVQIDMKPGKADGYDAVFLSPHKFVGGPGTPGLLCFQEHLYRLTVPSTAGGGTVRYVSRTKHAYIDDIEAREDAGTPAILGKIRTALAFKVKEELGVKALTSREHELFARSMARLTPNKRVHLLGNPDSPRLAFLSFLIRTESGAFLHPRFVVRLLNDLFGIQARGGCACAGPYGHVLLGIDEERSERYLNCVLGEMDGLKPGWTRLNLAPWATDAEVDFLLDAIEFVAAYGERFLPLYHFDWGSGAWTHDADTAPLDLFGEARPERSGGDVPYAEYLAEAAARVAALAPDLEQRTIPAHIPADLVFFAY
>NZ_CP011387.1|WP_064013542.1|115965_117120_+|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha
MMTASPSSPTTLPLASPIEPFSPEPLRWVAEDGRPVRDLPARYTPELLRELHREMVRAREFDRKLVTLLRQGRTTFYAQSSGMEATQVGLARSIRVGHDWVWPYYRDHTLGLAMGVPMIDLISQCLGTNSDLCKGRQMPHHFGSASKNFVSISSSIASQVPPAAGNAMAQKYLGTDEITLCTFGDGATSEGDWHAGLNMAGAAKAPALFVCENNQWAISTNLAAQTASPNIHIKAKAYGMPGFYVDGNDIVAVMEVCGYAAEWVRAGNGPALVECLTYRVGSHSNADADAEKNYRTRDEVNSWLARDPIARVEGLLAHLGHPVDAEERADLISAVHRAVDADVLKAEATGQPDWRIMFEDVYADTPPHLREQAAFVRAEMEGQK
>NZ_CP011387.1|WP_064013543.1|117116_118130_+|alpha-ketoacid-dehydrogenase-subunit-beta
MTATQERPTGAGETRILTLIQAVTEAMREELARDERVVVFGEDVGARGGVFLATAGLQAEFGPRRVFDTPLSEASVVGAAVGMAVRGLRPIAEIQFADYMGPGFDQIISQAAKIRYRSGGQFTAPMIIRTPSGGGVKGGHHHSQSPESYFTHTPGLKVVMPSTPYDAKGLLKAAIRGEDPVIYFEPKRLYRAAKGEVPSHDYTVKIGEGAIRREGTDLTLVGYGGVMPDAERAAAALAAEGVSVEVIDLRSLVPWDRELVLSSVQKTGRAVLVSEAPRISNFMGEVAYVIQEQAFDSLLAPVGQVAGFDTPYPYVQDKVYLPGPNRITAACVKALNY
>NZ_CP011387.1|WP_082869585.1|118150_118396_+|hypothetical-protein
MLGAMNPNFLRPFLGTIGLLIGFGLYSQAGRLPEPWQSLCIGAMFVLLGVAAWVYAAGERWIQVLGVILMGYGLLRAFLLR
>NZ_CP011387.1|WP_064013545.1|118470_120015_+|2-oxo-acid-dehydrogenase-subunit-E2
MKEVLLPELAESVVEGEILKWLVQEGDMIALEQPLCEVMTDKVTVELPSPVAGRLAKRLAQEGDVVAVHAAIALIDESGAESAAGGAGESVAPIQAIQDSVQNPATTAEHLPPQAQEERSIVEAGHIPAKADDDTSLFKAFASDETVKVQGLGNAGRTAVLTAPAPAQPAVQTREDGRVLAVPAARQLARELGVDVAQVQGSGPNGRVRVQDVTAHVERVKAPAAQSPVAQAPAAQAQPAQSAAPAPAPQPQAPAKPAPTNTGGMPVAPVQYRTPKGYEHLEDRVPLRGMRRAISNQMQASHLYTVRTLTVDEVNLTKLVTFRDRVKEEAKEAGVRLSYMPFFFKAVAVALRKYPSLNTSFDEATGEIVQKRYYHMGMAVATDAGLTVPVLRDVNHKSVFDLAREVIDLAGRAQNGKLSADELTGSSFSITNIGSIGALFSFPIINVPDAAILGVHSIVKRPIVNEHDEIVVAHMMYLSLSFDHRLVDGAEAARFCKEVIRLLENPDRLMLEGM
>NZ_CP011387.1|WP_064013546.1|120130_121045_-|glucose-1-dehydrogenase
MTSDQHELNQQGQPETAAIQDMPEQVPAETQDEQPGSEAEMSVAPVVVRDNYRGSGKLEGKVALITGGDSGIGRAVAVHFAREGADVAVLYLDEHEDAKATAEMIESEGRRCLTIAGDVGDPQIAKDAVQQTVDKFGRLDIVVNNAAEQHPQDSITDITPEQLQATFRTNVFGMFYVTQAALPHLKEGASIINTTSVTAYKGSPQLLDYSSTKGAQVAFTRSLSQALAEQGIRVNAVAPGPIWTPLIPATFDAERVGEHGADVPLKRPGQPAEVAPAYVYLASEDSSYVTGQVMHVNGGEVVNG
>NZ_CP011387.1|WP_157451029.1|121192_123208_-|transketolase
MSTSPEQSGTEQATGQTSGAAQLSINTIRTLSIDGVQQANSGHPGAPLGAAPMGYVVWQDFLRHNPANPEWAGRDRFVLSAGHASMLIYSLLHLTGYDMPLEDIKNFRQWGSKTPGHPEFFHTKGLDATTGPLGQGAAMTVGMAMAQAHLAARYNREGFPVFDNFVYSILGDGDLQEGVNHESAALAGHLKLGRLIWLHDDNQVQLDTATDKAESENTSERYRAYGWQVLRVQDGNNLDEIRAAIEQAKANKDQPTLIHVRTVIGFGSPRAGTSKAHGEPLGAEGVASTKAALGWDYPPFTVPDEVKAHMDATARGAEQEGQWNEMMAGYHAAHPELALELDAMLARELPANLADALPSYEVGGKASGTRVTSGEVINALAKVVPGLMGGSADLSGSTKTTITDGGTLDSSNYAGRNVYFGVREFGMAAAANGLSLFGGLRPLVGTFLVFADYLKPAFRLSALQMQPVTYVLTHDSIGLGEDGPTHQPIEQLAMLRSVPGAHVIRPADANETAAAWLMALEYGKGPTALILSRQDLPILPRNHAGVKKGAYVLRDADNAQVILVASGSEVALALSSADALAAEGIGARVVSMPCMEVFRAQDRSYRDSVLTPGVKRVAIEAATKQPWYEWVGLDGAVIGMDTFGASAPAPILFEKFGFSVPNVVKTVKGLL
>NZ_CP011387.1|WP_064013547.1|123297_124203_-|pyridoxal-kinase
MTAPAPASVTLPLNILSIQSWVSYGHVGNAAAVFPLQCLGFEVWAVNTVQFSNHTGYGAWTGAVFPPELVAELLDGIEARGALPGCHAVLSGYMGSEGTVAAVVGAVQRVRAANPAALYCCDPVMGDVGRGVFVRPELPELIAGQAIPAADIVTPNQFELELLTGQTVNTLQDALSAAHALRGRLNPNGPQIVLVTSLTRSDAPQDTIETLAVTDEGAWLCRTPLLPLDPPRNGTGDAIAALFLGQFVRTGNVATALSLSMSALYVLLERTHQAGTREIQLVAARDEYAAPGRVFGAEQVD
>NZ_CP011387.1|WP_157451030.1|124254_125360_-|IS630-family-transposase
MGRQKQWVVKLSDDERQQLTDMTRKGVHSARVMTRARLLLLSEQGLLDQEVAQRQGVNAATVASIRKKYAEGGLQAALYEKERPKQPPKLDPQQTAILIAEVCSTPEGREKWTMQLLADRLVTLGVVDSISDETVRRTPEKNALKPWQVQSWCVAQVGADFVWRMEAVLDTYAQPYDASRPVICFDEKSYQLLDHVREPLPPVPGIPARVDHEYKRCGTVNFFVAFEPLTGQRTVTVTERRGNAEFAAQLQSLEVHYPEAEKITLVLDQLSTHSPAALYQHLPAEEARQLTRRFEWVHTPKHASWLNMAELEWSALQRQCLGQRLASKEAVEREIHAWETDRNARAVRVNWQFSTPAAREKLGRHYPA

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP011387_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011387_2

2697572-2697651

Orphan

Consensus_repeat	Method
CTACCGTCTTGGGTCGGTGCTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011387_2

>merge|NZ_CP011387|2|2697572-2697651|CRISPRCasFinder
CTACCGTCTTGGGTCGGTGCTTTGTCGGGCGCAGTCGAGCTAATCCAACTGCCCCTGCTGCCGTCTTGGGTCGGTGCTTT

>NZ_CP011387|2|2|2697572-2697651|CRISPRCasFinder
CTACCGTCTTGGGTCGGTGCTTT	GTCGGGCGCAGTCGAGCTAATCCAACTGCCCCTG
CTGCCGTCTTGGGTCGGTGCTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011387.1\|WP_157451248.1\|2703820_2705737_-\|menaquinone-biosynthesis-decarboxylase	unknown	unknown	gnl\|CDD\|163413
NZ_CP011387.1\|WP_064015526.1\|2695259_2695571_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011387.1\|WP_064015537.1\|2711718_2712333_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP011387.1\|WP_064015536.1\|2710924_2711614_-\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|319859
NZ_CP011387.1\|WP_064015524.1\|2693725_2694214_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|224168
NZ_CP011387.1\|WP_082869766.1\|2696106_2696523_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011387.1\|WP_157451165.1\|2697316_2697463_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011387.1\|WP_157451167.1\|2700623_2700950_-\|transposase	unknown	unknown	gnl\|CDD\|225511
NZ_CP011387.1\|WP_157451164.1\|2695621_2696002_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011387.1\|WP_019010671.1\|2692818_2693094_-\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP011387.1\|WP_082869767.1\|2696624_2696747_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP011387.1\|WP_064015529.1\|2699643_2700672_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376564
NZ_CP011387.1\|WP_064015525.1\|2694430_2695189_-\|AIM24-family-protein	unknown	unknown	gnl\|CDD\|224924
NZ_CP011387.1\|WP_082869769.1\|2705912_2707523_+\|DUF4173-domain-containing-protein	unknown	unknown	gnl\|CDD\|379362
NZ_CP011387.1\|WP_064015523.1\|2691377_2692760_+\|DUF2252-domain-containing-protein	unknown	unknown	gnl\|CDD\|313268
NZ_CP011387.1\|WP_082869770.1\|2707535_2708447_-\|DUF1266-domain-containing-protein	unknown	unknown	gnl\|CDD\|377728
NZ_CP011387.1\|WP_064015522.1\|2690818_2691280_+\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|377602
NZ_CP011387.1\|WP_064015535.1\|2709924_2710602_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|226674
NZ_CP011387.1\|WP_082869768.1\|2698533_2699379_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP011387.1\|WP_064015534.1\|2708470_2709691_+\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|223085

Protein	Function_ID	Function_description	E-value
NZ_CP011387.1\|WP_064015536.1\|2710924_2711614_-\|HAD-IA-family-hydrolase	gnl\|CDD\|319859	cd16423, HAD_BPGM-like, uncharacterized subfamily of beta-phosphoglucomutase-like family, similar to uncharacterized Bacillus subtilis YhcW. This subfamily includes the uncharacterized Bacillus subtilis YhcW. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	9.40838e-63
NZ_CP011387.1\|WP_064015524.1\|2693725_2694214_+\|N-acetyltransferase	gnl\|CDD\|224168	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane].	3.35003e-34
NZ_CP011387.1\|WP_064015537.1\|2711718_2712333_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	5.04306e-50
NZ_CP011387.1\|WP_064015529.1\|2699643_2700672_+\|IS110-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	1.18494e-28
NZ_CP011387.1\|WP_157451248.1\|2703820_2705737_-\|menaquinone-biosynthesis-decarboxylase	gnl\|CDD\|163413	TIGR03701, mena_SCO4490, menaquinone biosynthesis decarboxylase, SCO4490 family. Members of this protein family are putative decarboxylases involved in a late stage of the alternative pathway for menaquinone, via futalosine, as in Streptomyces coelicolor and Helicobacter pylori. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	0
NZ_CP011387.1\|WP_157451167.1\|2700623_2700950_-\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.522e-08
NZ_CP011387.1\|WP_019010671.1\|2692818_2693094_-\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	6.54759e-35
NZ_CP011387.1\|WP_082869767.1\|2696624_2696747_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	7.16609e-06
NZ_CP011387.1\|WP_064015525.1\|2694430_2695189_-\|AIM24-family-protein	gnl\|CDD\|224924	COG2013, COG2013, Uncharacterized conserved protein [Function unknown].	2.8658e-41
NZ_CP011387.1\|WP_082869769.1\|2705912_2707523_+\|DUF4173-domain-containing-protein	gnl\|CDD\|379362	pfam13777, DUF4173, Domain of unknown function (DUF4173). This domain of unknown function contains multiple predicted transmembrane domains.	4.69794e-36
NZ_CP011387.1\|WP_064015523.1\|2691377_2692760_+\|DUF2252-domain-containing-protein	gnl\|CDD\|313268	pfam10009, DUF2252, Uncharacterized protein conserved in bacteria (DUF2252). This domain, found in various hypothetical bacterial proteins, has no known function.	3.84284e-156
NZ_CP011387.1\|WP_082869770.1\|2707535_2708447_-\|DUF1266-domain-containing-protein	gnl\|CDD\|377728	pfam06889, DUF1266, Protein of unknown function (DUF1266). This family consists of several hypothetical bacterial proteins of around 235 residues in length. Members of this family seem to be found exclusively in the Enterobacteria Salmonella typhimurium and Escherichia coli. The function of this family is unknown.	3.45199e-29
NZ_CP011387.1\|WP_064015522.1\|2690818_2691280_+\|gamma-glutamylcyclotransferase	gnl\|CDD\|377602	pfam06094, GGACT, Gamma-glutamyl cyclotransferase, AIG2-like. GGACT, gamma-glutamylamine cyclotransferase, is a ubiquitous enzyme found in bacteria, plants, and metazoans from Dictyostelium through to humans. It converts gamma-glutamylamines to free amines and 5-oxoproline.	2.28481e-26
NZ_CP011387.1\|WP_064015535.1\|2709924_2710602_+\|SDR-family-oxidoreductase	gnl\|CDD\|226674	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only].	1.34034e-53
NZ_CP011387.1\|WP_082869768.1\|2698533_2699379_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	6.78412e-56
NZ_CP011387.1\|WP_064015534.1\|2708470_2709691_+\|aminopeptidase-P-family-protein	gnl\|CDD\|223085	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism].	1.19304e-33

>NZ_CP011387.1|WP_157451165.1|2697316_2697463_-|hypothetical-protein
MKPKIKAVLFLLTAALTIAGGSMSANLTANTAPDKAPTQDGSRGTWAS
>NZ_CP011387.1|WP_082869767.1|2696624_2696747_+|helix-turn-helix-domain-containing-protein
MPLQSVYDLIRSGELRSICVGRRILIPLTAIEDFLNDGAK
>NZ_CP011387.1|WP_082869766.1|2696106_2696523_-|hypothetical-protein
MRIGIMPWEETLQELTRCLPERVRLSSSRDAPAVEVRYSDYPFNDGWITVGLITDTFHPLTSSGLLFFEAALREACEERGWPWQVGGRRLQLAHARVTCAAPPRPVTYGADAATPVEALALALLQAVVTSGADIDRTE
>NZ_CP011387.1|WP_157451164.1|2695621_2696002_-|hypothetical-protein
MEQWTMARFQDVVNARMDQQVDQVGTQDELRSFLQSMTSGIEAEVEQLRGSATVIQQPIWQDGRLLSSLQLQFEGSTRLPAETVYLSLGKNADTSYTLFVNRSADNVHTAQEGIEAFFEALIPKPN
>NZ_CP011387.1|WP_064015526.1|2695259_2695571_-|hypothetical-protein
MNKRVLIRFVPPAPIKIAVSKGVSRTRDWNTEKLVGFLQEGLEIWAADAYPELELNVVDSRQAEIRFEGWKPDKELAAEMREAIGQQMGVVLEGIEPDEYLSE
>NZ_CP011387.1|WP_064015525.1|2694430_2695189_-|AIM24-family-protein
MQLVQEHVGSGLTLRVHALTRVTRFSRTPDGELGETREMDGRFTVEAELNGSGVLLEPGAFQYSVGQIEANVQQQQQGGFLRRAMATAGSGESAFATRFTGQGKVWTEPSRKHFVIAEMSGDPSDAMLLDDRAFYLAQDTMQLGTHTHSSISGILSGNGLRQPKLSGRGVFAVESPVPVSEIEVIELEGRQTLTVDGDLALMYSASLNVELRPLVRGMRNAMRTGEGFVYVFSGKGTVYLTPTHRTISGASL
>NZ_CP011387.1|WP_064015524.1|2693725_2694214_+|N-acetyltransferase
MPARAATLADAPAIARIYNEGIADRIATFETRERTADDLRERLSSPQAAQHPAVVIVEAGEVLAFAWSAPYSAREVYAGIGDHGVYVARAARGQGHGAAALRALMEAAKAAGLHKLTSRILTENTPSRRLHVHCGFREVGIHQRHAQLDGLWRDVVTVEVLL
>NZ_CP011387.1|WP_019010671.1|2692818_2693094_-|30S-ribosomal-protein-S15
MIDKKQTIQDNAKSDKDTGSTTVQIALLSARISNLSAHLTANKKDKHGQRGLQLMNGQRRRLLKYLERTNYDEYITLTDKLGIRRGQRIVR
>NZ_CP011387.1|WP_064015523.1|2691377_2692760_+|DUF2252-domain-containing-protein
MAHIQAQPLSAHALPSRAERREKGRAHRAEVPRESHATFTPAADRVNVLDVLQAGAKGCIPGLIPLRYGRMVASPFAFFRGTAGIMAADLAHTPTTGERVQASGDAHCANFGAFATGERNLVFDLNDFDETLRAPWEWDIKRLAASVVLAARGAGHSEPDACFAAQSAARAYRLHLRDYACMTHLDVWYDRIDATEALEDMAADAREQGQEMFRKAQGRTQLHTLSKLAHKEGKQWMLRDDPPLLTHTDDPEAASWLDEVRSGYFDSVPADRRALLSRYHLTDWALKVTGVGSCGRRVLVLLLAADGDDVIFLQVKEARPSVLEPFAGKTVARNSAHRIVRGQQLMQAASDPFLGWATRGEHCFYVRQLRDMKGRFDLEEVTPRSLEEIAELCGWALARAHARTGDAATIGTYLGKKEKFDGAIARFATLYADQAERDHAVLEQAVKSGAIEIETDPDDE
>NZ_CP011387.1|WP_064015522.1|2690818_2691280_+|gamma-glutamylcyclotransferase
MTVPTPELLTTVFVYGTLMPGERNAGVAARGGTFKAQPATLRGYRLLHLTPEAYPAVIPGGPETFVLGHALTYAPADWHAALPFLDALEGTEETPPLYTRERVELEVQGGQPLPAWVYLYARSDRLEQPGADAIASGDWREAPDRMRPRPSDR
>NZ_CP011387.1|WP_082869768.1|2698533_2699379_-|IS3-family-transposase
MIMDARSAHPTVSVRRLCELHAVSRSWYLGQQTRTPVDPDLGLAKEIEAIALKWSGYGYRRVTHELARRGHPTNHKRVLRVMRAGGLLCRPKRRFQATTDSTHSERRFPNLLPTVVPTQPNQVWQVDLTYVRVKSGFVYLACVLDSFTREIVGWAMSRCIDAALALTALGNALRARRPAPGLLHHSDQGSQYASRVYVDRLREAGLIPSMSRKGTPYDNARMESFYKTLKTEEVDLQDYLDFDDAQRHINHFIGQLYNEERLHSSLGYVPPTEFATRYHSA
>NZ_CP011387.1|WP_064015529.1|2699643_2700672_+|IS110-family-transposase
MLVLGIDVGKRELFVQLQDATGRSLGQRGPVANTPAGLQQVSDWVRKWTELAELHVVMEATNVYWERCAHYFQSLCCVVSVVNPAQIKYFARSVLRRGKTDAMDAELIARYGVVMHPGRWTPPSTALSDLKQLTREREAVLVRRTQEQNHLQALQDAHRASETVVKLTQQRLDLIVGQVVEIEAAMRALIEADELLSQQLKLLLSVPGFAFVAAATILAETVGFAHLDTGREMSAAAGMAPSPRQSGSKRGQGRISKTGNARLRRIAYLSALGASRSHSRMRTYYRHLRDTGKPAKVALVALGRKLLITGLAVVKSGQPYRDDFGRSQDGAGPTPTTAQPKT
>NZ_CP011387.1|WP_157451167.1|2700623_2700950_-|transposase
MPGRNHSREFKLEVVSQINTGQQTTAQLSRTHSLAPGLIYRWRKEVEARGEAAFTDGATTDRSDELRIAELERYCGQLALENTILDRVSRLDCQVFGWAVVGVGPAPS
>NZ_CP011387.1|WP_157451248.1|2703820_2705737_-|menaquinone-biosynthesis-decarboxylase
MPSLFAFSGTVAPAPCLYTRVMAFPDLRTFMRLLEDRGELVRVPFPVDRELEITEIADRLVKAGGPAVLFENVKGSPFPLVIGLMGTRERTALSLGVSDLDDLAAKVRALIDLKGSGGIGGMLGNVTKLKDAANLPPKRVKTGPVQEVVWRGDEVDLSKLPVLKCWPQDGGPFVTLPLVITKDPETGERNMGMYRMQVMSRNTTGMHWQRHKTGTRHLEKARKLGQRLEVAVALGGDPALIYAATAPLPPIPGLDEFALAGYLRGQRYPVTKGITVDLDVPANAEFILEGYIDPQEDWVMEGPFGDHTGFYTLPDLYPLFHVTAITMRRDPVYPATIVGRPPMEDAYLIEASERLFLPAAQLILPEIVDYHMPPAGVAHNLVVVGIDKKYPGHAYRVANGLFGLGQMMFAKVMVIVDKDVPVNNFEAVWREVAARAVPGRDTLTTRGPSDVLDHSSRGWGYGGKLILDATTKLPEEVGSALSSRDHQGTDGTEAVTFVPHASADLPAFEGVKAQRQTGDGYWLVAFHKTRPGQARELAEAFAAHPASAGVRHLLICDELTDVHDIQDVWWTILNNIDAERDVWTLSTPTGALLAWDGARKIPEEGFVREWPPKIEMEQGVKNRVDARWHVYGLPDSLR
>NZ_CP011387.1|WP_082869769.1|2705912_2707523_+|DUF4173-domain-containing-protein
MTQPEPVPHLPSVSTSAPAEAHPLTPAPTWDATPRPRPERAAWPAVAAAVAGVAAHFLTVNTFGQSGLNVAVWVALWGGLLLWSARQRGEKPSREGLTLLGVALAFALTFALWDAPGEFQFLNGLALLLALVLGAAVWRHAGLATTATGRMTGMVFTGGLRLIYGPFALLERFPWGRLRGAKSGRATPWLTGLLLTLPVLLVFGGLLAGADSGFADLISGLWRWNPEDLIQSSFSVLLWVAFACGLAYPALMALSPTLLGTATDTPEERGGRLGLIETGMPLLALGALFLVFLFTQLPYFLSGVTLPDGFTFAEYVRRGFSELLWVAFLTLGLLLAAYGLTRPEVRAQTTYRLLNLAVLLPLALVLVSAANRWRLYTLAYGLSEIRVLGAALLVWLVLALAWLGVCLWRGTLRRFAYPALLAGFGTLLIATLINPGALIARVNVGRELAAVTNVTRSTPQQADVWKLISLGADAVPTVVANLDKLSRICPNTERECNNSRAYVVQRLKVEYGAARDLRVWNLSQERARRAVLGLRE
>NZ_CP011387.1|WP_082869770.1|2707535_2708447_-|DUF1266-domain-containing-protein
MEPDSGGWGTLGLMDVVRLLVPIAVVLVVMLLIWAGRAMLEGAREGIAEAKEEEAAAKAVQAAEQQAKTEARLERFEAASAALSPADRFALNLRAPFTEIWLEIFPHEDDARELEYFYRLTPPAGQEHELRKALEDGWDITDHGSALHTLAWLIDSGHRLPYLQVRQALAEGEDLKGRAREAGVVSKWEAQAGEAGGAAFDLARAVDVAAMAHALGYLSEAECWRILRQCRIISQDLFGSWEVYGQSFLAGAEFWKSGGLMDGTRNKRYAGSIRWLMEDAQSPWRRDPWPVSVERQERLKGMN
>NZ_CP011387.1|WP_064015534.1|2708470_2709691_+|aminopeptidase-P-family-protein
MTNPIDQMRAALASTDLDGWLIYDFQGLNPHAAKVLGLPKEAFLTRRFFVWVPREGQAVLLHNHIEGGTWATLSAGWGVERRAFGSHDQLDTALRDVVAGKRVAMEYSPLGSVPYVSRVDAGTVERVRAAGAEIVSSADLLQAFLIWSAEDLAAHERAVAVLMQAKDDAYRLIHERLKAGQTVTELDAQAVIGQAIEAAGMVSGHPVNVSFGVNAADSHYEPNPEQHATLSWGQCVLIDLWAQEPGRPFADVTWVGYAGQPSETYLDAWQAVAAARDAGIAQLLAGGDLSGWQIDRTVRDTMGAPWSEFFFHRTGHDLGVQIHGSGANLDDYETHDIRRLTPGLCVTVEPGTYPAAQGFGIRTEVDVYLDPAGARVTTDTQRQPFVLGMGDWEAVRAAAYGEEAVG
>NZ_CP011387.1|WP_064015535.1|2709924_2710602_+|SDR-family-oxidoreductase
MANLGSSTVMLTGAGGALATAIAQELEDAGAQIVLVGRGEALAKAADRFPATEVIDVDLTDPASVDLLRKVKVDTLVHTAGAFAMQDAQKATTADLNAMFGANMLTLFHAVQGVLPSMLKQKDGLIMGVSAGQAARLSGPRAALYTASKAAVSAYILSLHDELKAKGVRGCVLYPMGAVDTPANRDAGMSWDSLIDPRGLAKSVAHALTRPDRAHVTELKVYPDV
>NZ_CP011387.1|WP_064015536.1|2710924_2711614_-|HAD-IA-family-hydrolase
MTAPESVLTALPHGIRAIIFDFDGTILDTESREFWHWQELYRTHGRELALSDWQRGIGTWDAFDPWAGLPDAVRADREQVHAALHGRILADIQEQDVRPGVRAVLEAVRPAGLRLALATSSDRAWVTRWLEHHGMLHLFEVLATRDDVARVKPDPELYLLAAHRLGLKPEECIAVEDSLNGATAAVAAGTRVLVVPNEVTHTQPFPATWPRIGGYEGGLAEVVRVALGG
>NZ_CP011387.1|WP_064015537.1|2711718_2712333_+|DedA-family-protein
MAEWVQNVMDTLGYAGILLLMIVENLFPPLPSEVILPSAGFAASRGSLNVVIVVIVATIGSVVGTLPLYYIGRAFGEEKLVAWADKHGKWLTLRGKDIRRADDWFDKHGPKAVLFGRMIPGIRSLLSLPAGISEMPIFTFLIYSTIGSALWASSLVAAGYILGENFDQVEHYISPVSRVILVLLVIGAAVWFVRRKQAQKAETT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

319904 : 382547

Streptomyces_phage(20.0%)

transposase,integrase

attL 316365:316410|attR 353504:353549

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
316365:316410	attL	NA	NA	NA	NA
WP_157451039.1\|319904_320366_-\|transposase	transposase	NA	NA	NA	NA
WP_064013709.1\|320408_321236_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_064013710.1\|321351_321990_-	hypothetical protein	NA	NA	NA	NA
WP_082869598.1\|322434_322713_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_064015778.1\|323709_324120_+\|transposase	DDE transposase family protein	NA	NA	NA	NA
WP_082869599.1\|324116_324515_+\|transposase	transposase	NA	NA	NA	NA
WP_064013714.1\|324566_325253_-	hypothetical protein	NA	NA	NA	NA
WP_064015779.1\|325541_328778_+	type I restriction-modification system endonuclease	A0A2D1GP10	Streptomyces_phage	2.1e-12	28.1
WP_157451040.1\|328829_330173_-	hypothetical protein	NA	NA	NA	NA
WP_157451041.1\|330275_330416_+	hypothetical protein	NA	NA	NA	NA
WP_157451042.1\|330467_331223_+	hypothetical protein	NA	NA	NA	NA
WP_064013718.1\|331264_332740_+	type I restriction-modification system subunit M	NA	NA	NA	NA
WP_157451043.1\|332904_334467_+	hypothetical protein	NA	NA	NA	NA
WP_064013720.1\|334476_334890_+	hypothetical protein	NA	NA	NA	NA
WP_064013721.1\|334920_335691_+	hypothetical protein	NA	NA	NA	NA
WP_064013722.1\|336133_336706_-	hypothetical protein	NA	NA	NA	NA
WP_064013723.1\|336919_337144_+	hypothetical protein	NA	NA	NA	NA
WP_064013724.1\|337274_340580_+	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_064013725.1\|340582_341041_+	hypothetical protein	NA	NA	NA	NA
WP_157451044.1\|341322_341547_+	hypothetical protein	NA	NA	NA	NA
WP_064013727.1\|341711_342257_+	hypothetical protein	NA	NA	NA	NA
WP_082869601.1\|342356_342659_-	hypothetical protein	NA	NA	NA	NA
WP_082869602.1\|343078_344266_-\|integrase	site-specific integrase	A0A2H4JCB7	uncultured_Caudovirales_phage	3.7e-36	29.9
WP_064013729.1\|344358_344718_-	hypothetical protein	NA	NA	NA	NA
WP_157451045.1\|344865_345633_+	hypothetical protein	NA	NA	NA	NA
WP_064013731.1\|345610_346369_-	hypothetical protein	NA	NA	NA	NA
WP_082869603.1\|347013_347970_-	DUF4435 domain-containing protein	NA	NA	NA	NA
WP_082869604.1\|347966_349118_-	ATP-binding protein	NA	NA	NA	NA
WP_064013732.1\|349748_352085_-	hypothetical protein	A0A2I7S7M1	Vibrio_phage	2.1e-11	27.6
WP_157451046.1\|352202_352406_-	hypothetical protein	NA	NA	NA	NA
WP_064013733.1\|352509_353364_+	hypothetical protein	NA	NA	NA	NA
WP_064013734.1\|353588_354320_-	HD domain-containing protein	NA	NA	NA	NA
353504:353549	attR	NA	NA	NA	NA
WP_082869605.1\|354376_354979_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
WP_064013736.1\|355017_355608_+	DinB family protein	NA	NA	NA	NA
WP_064013737.1\|355715_356795_+	PilT/PilU family type 4a pilus ATPase	NA	NA	NA	NA
WP_157451047.1\|356831_356993_+	hypothetical protein	NA	NA	NA	NA
WP_157451048.1\|356995_357493_-	hypothetical protein	NA	NA	NA	NA
WP_064013739.1\|357489_361500_-	DNA polymerase III subunit alpha	A0A0K1Y8J9	Streptomyces_phage	8.0e-208	36.1
WP_082869606.1\|361727_361919_+	hypothetical protein	NA	NA	NA	NA
WP_064013740.1\|361939_362671_-	bifunctional dihydropteridine reductase/dihydrofolate reductase TmpR	NA	NA	NA	NA
WP_064013741.1\|362667_363078_-	NUDIX domain-containing protein	Q6IWU4	Burkholderia_phage	3.4e-05	28.6
WP_064015780.1\|363181_364687_-	ABC transporter permease subunit	G3M9Y6	Bacillus_virus	3.8e-25	34.0
WP_157451187.1\|364689_365550_-	EamA family transporter	NA	NA	NA	NA
WP_064013743.1\|365845_366163_+	hypothetical protein	NA	NA	NA	NA
WP_064013744.1\|366350_367205_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	2.6e-15	37.2
WP_064013745.1\|367373_368615_-	MFS transporter	NA	NA	NA	NA
WP_064015781.1\|368611_369334_-	endonuclease III	NA	NA	NA	NA
WP_064013746.1\|369560_370772_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_157451049.1\|370810_371371_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.1e-19	41.8
WP_064013747.1\|371447_372584_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_064013748.1\|372669_373833_+	vancomycin resistance protein	NA	NA	NA	NA
WP_064013749.1\|373910_375158_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_064013750.1\|375498_376416_+	class II fructose-1,6-bisphosphate aldolase	NA	NA	NA	NA
WP_064013751.1\|376498_377275_+	hypothetical protein	NA	NA	NA	NA
WP_064013752.1\|377400_379926_+	S8 family serine peptidase	U5J9E4	Bacillus_phage	9.7e-26	31.9
WP_064013753.1\|380262_380685_+	CBS domain-containing protein	A0A2I6B2H4	Macacine_betaherpesvirus	1.3e-15	39.7
WP_064013754.1\|380744_381380_-	LysE family translocator	NA	NA	NA	NA
WP_082869802.1\|381297_381984_+	hypothetical protein	NA	NA	NA	NA
WP_157451050.1\|381887_382547_+\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

2116498 : 2123920

Thermobifida_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064015076.1\|2116498_2117341_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	6.8e-08	34.5
WP_082869846.1\|2117487_2118744_+	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	A1IMD5	Streptococcus_phage	2.3e-44	37.4
WP_064015077.1\|2118922_2119954_+	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_064015078.1\|2120028_2121978_-\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	8.9e-120	37.2
WP_064015079.1\|2122250_2122649_-	DUF805 domain-containing protein	D6PSS5	Lactobacillus_phage	4.3e-05	28.1
WP_064015080.1\|2122784_2123030_-	NrdH-redoxin	A0A0S2MYD3	Enterococcus_phage	7.0e-06	34.6
WP_064015081.1\|2123272_2123920_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	1.6e-12	33.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011387

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection