CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015596	Mycobacterium sp. YC-RL4 chromosome, complete genome	0 crisprs	csa3,DEDDh,cas3,DinG,WYL	0	0	3	0
NZ_CP015597	Mycobacterium sp. YC-RL4 plasmid pMYC1, complete sequence	1 crisprs	DEDDh,csf3gr5,csf2gr7,csf4gr11,csf1gr8	0	1	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

335594 : 459217

108

Mycobacterium_phage(44.44%)

integrase,transposase

attL 376944:377003|attR 459248:459285

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_067990361.1\|335594_336809_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_067990364.1\|337224_338523_+	HNH endonuclease	NA	NA	NA	NA
WP_156525809.1\|338670_341091_-	hypothetical protein	NA	NA	NA	NA
WP_067990370.1\|341195_342026_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_067990373.1\|342035_342716_-	DUF1275 domain-containing protein	NA	NA	NA	NA
WP_067990375.1\|342736_343450_-	mammalian cell entry protein	NA	NA	NA	NA
WP_067990379.1\|343416_343968_-	mammalian cell entry protein	NA	NA	NA	NA
WP_067990382.1\|343964_344936_-	RDD family protein	NA	NA	NA	NA
WP_067990385.1\|344932_345571_-	hypothetical protein	NA	NA	NA	NA
WP_082901979.1\|345540_347094_-	MCE family protein	NA	NA	NA	NA
WP_067990388.1\|347097_348252_-	virulence factor Mce family protein	NA	NA	NA	NA
WP_067990390.1\|348251_349895_-	virulence factor Mce family protein	NA	NA	NA	NA
WP_067990393.1\|349905_351492_-	virulence factor Mce family protein	NA	NA	NA	NA
WP_067990396.1\|351488_352520_-	MCE family protein	NA	NA	NA	NA
WP_067990399.1\|352578_353799_-	MCE family protein	NA	NA	NA	NA
WP_067990402.1\|353803_354673_-	ABC transporter permease	NA	NA	NA	NA
WP_068001701.1\|354674_355472_-	ABC transporter permease	NA	NA	NA	NA
WP_156525810.1\|355689_357318_-	long-chain-fatty-acid--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	9.0e-33	29.3
WP_082901980.1\|357338_358169_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_067990411.1\|358165_358609_-	SRPBCC family protein	NA	NA	NA	NA
WP_067990414.1\|358631_359066_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_067990416.1\|359080_360163_+	alcohol dehydrogenase catalytic domain-containing protein	E3SJ82	Synechococcus_phage	2.8e-30	30.2
WP_067990419.1\|360144_361707_-	phospholipase	NA	NA	NA	NA
WP_067990422.1\|361880_363002_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA
WP_067990424.1\|363009_363696_+	FadR family transcriptional regulator	NA	NA	NA	NA
WP_067990428.1\|363692_365207_-	transporter	NA	NA	NA	NA
WP_067990431.1\|365223_365766_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA
WP_067990434.1\|365765_366779_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_067990437.1\|366916_368629_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_067990440.1\|368645_369887_-	fatty acid desaturase	NA	NA	NA	NA
WP_082902351.1\|369899_371048_-	ferredoxin reductase	NA	NA	NA	NA
WP_067990443.1\|371153_371930_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_067990446.1\|371926_372568_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_019514171.1\|372712_372823_+	hypothetical protein	NA	NA	NA	NA
WP_067990449.1\|372905_373685_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.6e-27	34.0
WP_067990452.1\|374350_374980_-	vitamin K epoxide reductase family protein	NA	NA	NA	NA
WP_047041144.1\|374976_375765_-	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_047041146.1\|375800_376901_-	alpha/beta hydrolase	M1PGN2	Moumouvirus	1.4e-29	33.2
376944:377003	attL	NA	NA	NA	NA
WP_019344575.1\|376977_378291_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	2.1e-205	82.8
376944:377003	attL	NA	NA	NA	NA
WP_080989707.1\|378398_378620_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_156525811.1\|378878_379019_+	hypothetical protein	NA	NA	NA	NA
WP_047040723.1\|379079_379946_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.4e-45	36.7
WP_078332429.1\|380071_381346_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_047040730.1\|381640_382882_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_047040733.1\|383040_384354_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	3.5e-205	82.3
WP_047040736.1\|384524_385988_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_095795377.1\|385996_386596_+	3-phenylpropionate/cinnamic acid dioxygenase subunit beta	NA	NA	NA	NA
WP_047040740.1\|386592_386925_+	hypothetical protein	NA	NA	NA	NA
WP_047040743.1\|386943_387138_+	ferredoxin	NA	NA	NA	NA
WP_067990455.1\|387137_388370_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_047040748.1\|388369_389116_+	class II aldolase/adducin family protein	NA	NA	NA	NA
WP_067859787.1\|390215_391016_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_156525812.1\|392471_392894_-	hypothetical protein	NA	NA	NA	NA
WP_047040755.1\|392890_393109_-	hypothetical protein	NA	NA	NA	NA
WP_019344575.1\|393746_395060_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	2.1e-205	82.8
WP_047040760.1\|395214_395505_+\|transposase	transposase	A9YX41	Burkholderia_phage	8.0e-09	42.4
WP_082901982.1\|395510_396395_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.3e-35	37.6
WP_156525813.1\|397427_398690_+\|transposase	IS21 family transposase	NA	NA	NA	NA
395035:396498	attR	NA	NA	NA	NA
WP_156526055.1\|398707_399475_+	DNA replication protein	U5N3V8	Enterobacteria_phage	1.9e-49	41.7
395035:396498	attR	NA	NA	NA	NA
WP_048896569.1\|400242_401295_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_052773276.1\|401866_402700_+	MFS transporter	NA	NA	NA	NA
WP_156525814.1\|402789_403933_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	9.2e-32	32.8
WP_019344575.1\|404026_405340_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	2.1e-205	82.8
WP_081285485.1\|405306_405576_+	hypothetical protein	NA	NA	NA	NA
WP_047040856.1\|405600_406071_+	hypothetical protein	NA	NA	NA	NA
WP_047040871.1\|406295_406784_-	cupin domain-containing protein	NA	NA	NA	NA
WP_047040853.1\|406855_407545_-	3-oxoacid CoA-transferase subunit B	NA	NA	NA	NA
WP_047040851.1\|407541_408240_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA
WP_047040849.1\|408236_409418_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA
WP_043416463.1\|409414_410620_-	3-carboxy-cis,cis-muconate cycloisomerase	NA	NA	NA	NA
WP_043416462.1\|410616_411186_-	protocatechuate 3,4-dioxygenase subunit alpha	NA	NA	NA	NA
WP_043416460.1\|411185_411983_-	protocatechuate 3,4-dioxygenase subunit beta	NA	NA	NA	NA
WP_047040843.1\|412053_412803_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_017682183.1\|415513_416467_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_010596918.1\|416584_417964_-	mercuric reductase	A0A2K5B2C5	Erysipelothrix_phage	1.5e-57	32.5
WP_010596917.1\|417960_418857_-	mercury transporter	NA	NA	NA	NA
WP_010596916.1\|418853_419360_-	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_010596915.1\|419356_419656_-	hypothetical protein	NA	NA	NA	NA
WP_026138108.1\|419655_420045_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010596913.1\|420173_421613_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.1e-42	28.9
WP_010596912.1\|421631_422075_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_010596911.1\|422146_422791_+	organomercurial lyase MerB	NA	NA	NA	NA
WP_017682184.1\|422859_425871_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	5.4e-132	32.2
WP_048896599.1\|426095_427967_+	hypothetical protein	NA	NA	NA	NA
WP_053122705.1\|427976_428954_+	hypothetical protein	V5UQR9	Mycobacterium_phage	1.2e-37	57.8
WP_048896598.1\|429494_430208_-	hypothetical protein	NA	NA	NA	NA
WP_080989714.1\|430220_431933_-	type VII secretion protein EccB	NA	NA	NA	NA
WP_080989713.1\|431990_433202_+	PPE domain-containing protein	NA	NA	NA	NA
WP_082901983.1\|433484_436637_+	hypothetical protein	NA	NA	NA	NA
WP_019344575.1\|436473_437787_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	2.1e-205	82.8
WP_067990473.1\|437926_438661_+	hypothetical protein	NA	NA	NA	NA
WP_019344575.1\|438685_439999_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	2.1e-205	82.8
WP_156525815.1\|440038_440275_-	hypothetical protein	NA	NA	NA	NA
WP_080989685.1\|441168_442005_+	TIGR03084 family protein	NA	NA	NA	NA
WP_048896469.1\|442353_442656_-	hypothetical protein	NA	NA	NA	NA
WP_048896468.1\|442652_444602_-\|integrase	tyrosine-type recombinase/integrase	A0A0K1Y646	Mycobacterium_phage	1.5e-05	29.2
WP_048896466.1\|445679_445862_-	hypothetical protein	NA	NA	NA	NA
WP_048896465.1\|446018_447143_+\|integrase	tyrosine-type recombinase/integrase	S5MBZ0	Brevibacillus_phage	7.9e-12	33.7
WP_067990476.1\|447307_448621_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	2.3e-228	91.3
WP_109772112.1\|448981_450120_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.1e-32	34.8
WP_019344575.1\|450170_451484_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	2.1e-205	82.8
WP_156525816.1\|451476_451713_+	hypothetical protein	NA	NA	NA	NA
WP_156525814.1\|451720_452865_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	9.2e-32	32.8
WP_052545499.1\|453563_454886_+\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	9.3e-238	91.4
WP_052543539.1\|454893_455595_-	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	9.9e-122	87.1
WP_048896462.1\|457388_458102_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_080989684.1\|458540_458933_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_080989683.1\|458908_459217_-\|transposase	IS3 family transposase	NA	NA	NA	NA
459248:459285	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2964010 : 2992637

Mycobacterium_phage(30.0%)

protease,integrase,capsid,terminase,portal,transposase

attL 2962210:2962234|attR 2975951:2975975

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2962210:2962234	attL	NA	NA	NA	NA
WP_067996198.1\|2964010_2964883_-\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_156526121.1\|2965001_2965439_-	hypothetical protein	NA	NA	NA	NA
WP_067996204.1\|2965507_2966875_-\|portal	phage portal protein	G9FHJ4	Rhodococcus_virus	5.8e-33	29.1
WP_067996207.1\|2966882_2968340_-\|terminase	terminase large subunit	A0A2K9VGS4	Pontimonas_phage	1.8e-56	32.1
WP_156525919.1\|2968759_2969158_-	hypothetical protein	NA	NA	NA	NA
WP_156525920.1\|2969154_2969586_-	hypothetical protein	NA	NA	NA	NA
WP_082902138.1\|2969821_2972065_-	AAA family ATPase	A0A0K1LTC9	Mycobacterium_phage	5.1e-111	54.2
WP_052543539.1\|2972223_2972925_+	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	9.9e-122	87.1
WP_052545499.1\|2972932_2974255_-\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	9.3e-238	91.4
WP_067996216.1\|2974798_2975926_+\|integrase	site-specific integrase	A0A0E3XBN7	Gordonia_phage	5.2e-96	53.2
WP_067996219.1\|2976126_2976744_+	ANTAR domain-containing response regulator	Q6XM27	Feldmannia_irregularis_virus	2.3e-05	33.0
2975951:2975975	attR	NA	NA	NA	NA
WP_067996221.1\|2976946_2978158_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_067996224.1\|2978266_2979277_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_156526122.1\|2979315_2980449_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_067996230.1\|2980445_2981294_+	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	2.9e-14	28.6
WP_067996233.1\|2981277_2982027_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.6e-14	27.3
WP_067996236.1\|2982037_2982265_-	DUF167 domain-containing protein	NA	NA	NA	NA
WP_067996240.1\|2982279_2983482_-	lipid-transfer protein	NA	NA	NA	NA
WP_067996243.1\|2983478_2983919_-	benzoylsuccinyl-CoA thiolase	NA	NA	NA	NA
WP_067996246.1\|2984071_2984440_+	hypothetical protein	NA	NA	NA	NA
WP_067996249.1\|2984518_2985325_-	hypothetical protein	NA	NA	NA	NA
WP_067996252.1\|2985493_2988223_+	DNA polymerase I	J9PVA4	Bacillus_phage	5.7e-40	34.9
WP_067996255.1\|2988254_2989472_+	threonine/serine exporter family protein	NA	NA	NA	NA
WP_067996257.1\|2989568_2990036_+	hypothetical protein	NA	NA	NA	NA
WP_067996260.1\|2990032_2990878_+	NAD(P)H-binding protein	NA	NA	NA	NA
WP_067996263.1\|2990874_2991468_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_067996266.1\|2991449_2992637_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_3

3362604 : 3425009

uncultured_Mediterranean_phage(57.14%)

integrase,transposase,holin

attL 3387641:3387658|attR 3440453:3440470

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_067994278.1\|3362604_3363777_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_067997155.1\|3363830_3364979_-	lipase	NA	NA	NA	NA
WP_082902428.1\|3365174_3366314_+	MFS transporter	NA	NA	NA	NA
WP_067997159.1\|3366320_3367130_-	LLM class F420-dependent oxidoreductase	NA	NA	NA	NA
WP_067997162.1\|3367265_3367868_+	hypothetical protein	NA	NA	NA	NA
WP_067997164.1\|3367869_3369555_-\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	2.4e-44	29.2
WP_067997167.1\|3369611_3369845_-	hypothetical protein	NA	NA	NA	NA
WP_082902429.1\|3369895_3371119_-	serine hydrolase	NA	NA	NA	NA
WP_068002864.1\|3371144_3372092_-	WYL domain-containing protein	NA	NA	NA	NA
WP_067997172.1\|3372125_3372806_+	TIGR03086 family protein	NA	NA	NA	NA
WP_067997174.1\|3372902_3373151_+	DUF3297 family protein	NA	NA	NA	NA
WP_067997177.1\|3373159_3373369_-	hypothetical protein	NA	NA	NA	NA
WP_067997179.1\|3373447_3374554_-	amidohydrolase	NA	NA	NA	NA
WP_067997181.1\|3374743_3375163_+	hypothetical protein	NA	NA	NA	NA
WP_082902160.1\|3375389_3375563_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_067997183.1\|3376029_3376803_+	HAD family hydrolase	NA	NA	NA	NA
WP_067997186.1\|3377175_3378222_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_067997189.1\|3378387_3378948_+	hypothetical protein	NA	NA	NA	NA
WP_067997191.1\|3378961_3379792_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_067997194.1\|3379788_3380661_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_067997197.1\|3380657_3381041_+	DUF1330 domain-containing protein	NA	NA	NA	NA
WP_082902430.1\|3381261_3383625_+	arylsulfatase	NA	NA	NA	NA
WP_128111748.1\|3384178_3384688_-	hypothetical protein	NA	NA	NA	NA
WP_067997206.1\|3385853_3386201_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_067997211.1\|3386197_3387277_-\|integrase	site-specific integrase	A0A1P8DJJ6	Virus_Rctr41k	9.0e-05	30.6
3387641:3387658	attL	NA	NA	NA	NA
WP_082902162.1\|3387978_3389109_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_156525938.1\|3391411_3392194_+\|transposase	TnsA-like heteromeric transposase endonuclease subunit	NA	NA	NA	NA
WP_067997218.1\|3392190_3394254_+	hypothetical protein	NA	NA	NA	NA
WP_067997221.1\|3394257_3395256_+	AAA family ATPase	NA	NA	NA	NA
WP_082902165.1\|3396505_3396721_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_024445221.1\|3396935_3397463_+	hypothetical protein	NA	NA	NA	NA
WP_067997228.1\|3397503_3398358_+	hypothetical protein	NA	NA	NA	NA
WP_024445219.1\|3398438_3398807_+	hypothetical protein	NA	NA	NA	NA
WP_067997229.1\|3398856_3399735_+	hypothetical protein	NA	NA	NA	NA
WP_051226544.1\|3399739_3400753_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_067997232.1\|3401053_3401758_-	cardiolipin synthase	NA	NA	NA	NA
WP_067997235.1\|3401747_3403799_-	DUF1998 domain-containing protein	NA	NA	NA	NA
WP_067997238.1\|3403798_3407512_-	helicase	NA	NA	NA	NA
WP_067997241.1\|3407511_3411600_-	N-6 DNA methylase	A0A1B1IUC6	uncultured_Mediterranean_phage	2.0e-41	26.6
WP_082902166.1\|3411599_3413897_-	DEAD/DEAH box helicase	A0A1B1IUI1	uncultured_Mediterranean_phage	4.7e-43	27.4
WP_067997243.1\|3414156_3417606_-	helicase	A0A2K5B2B9	Erysipelothrix_phage	4.5e-50	26.9
WP_067997246.1\|3417602_3421610_-	hypothetical protein	A0A1B1IUC6	uncultured_Mediterranean_phage	1.1e-15	25.0
WP_067997248.1\|3421650_3421830_-	helix-turn-helix domain-containing protein	A0A1B1IUF9	uncultured_Mediterranean_phage	1.2e-15	54.2
WP_082902167.1\|3422100_3422667_-	hypothetical protein	NA	NA	NA	NA
WP_082902168.1\|3422663_3425009_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
3440453:3440470	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP015597

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015597_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015597_1

54151-54223

Orphan

Consensus_repeat	Method
GTAGTGCTAACAATTGCAAGCAC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP015597_1

>merge|NZ_CP015597|1|54151-54223|CRISPRCasFinder
GTAGTGCTAACAATTGCAAGCACTAGTGCTACCCGCCAGGTTCGTGGTCCGTAGTGCTAACAATTGCAAGCAC

>NZ_CP015597|1|1|54151-54223|CRISPRCasFinder
GTAGTGCTAACAATTGCAAGCAC	TAGTGCTACCCGCCAGGTTCGTGGTCC
GTAGTGCTAACAATTGCAAGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015597.1\|WP_068003966.1\|40145_41447_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340924
NZ_CP015597.1\|WP_068003978.1\|56113_56509_-\|transcription-factor-WhiB	unknown	unknown	gnl\|CDD\|376791
NZ_CP015597.1\|WP_068003969.1\|45973_46579_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379883
NZ_CP015597.1\|WP_068003996.1\|58613_59342_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015597.1\|WP_068003977.1\|54497_55181_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015597.1\|WP_082902500.1\|52230_53523_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015597.1\|WP_068003991.1\|58065_58416_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015597.1\|WP_068003981.1\|56568_57201_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015597.1\|WP_068003964.1\|37769_40085_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379155
NZ_CP015597.1\|WP_068004421.1\|46837_48235_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|365860
NZ_CP015597.1\|WP_068003985.1\|57526_58069_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015597.1\|WP_068003975.1\|50836_52234_-\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|180177
NZ_CP015597.1\|WP_068003983.1\|57197_57530_-\|transcription-factor-WhiB	unknown	unknown	gnl\|CDD\|376791
NZ_CP015597.1\|WP_156526206.1\|37326_37773_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015597.1\|WP_068003998.1\|59477_59924_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP015597.1\|WP_156526207.1\|49192_50677_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015597.1\|WP_068003968.1\|42438_43263_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|366166
NZ_CP015597.1\|WP_068004430.1\|60333_60915_+\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|180377
NZ_CP015597.1\|WP_068003967.1\|41443_42319_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP015597.1\|WP_068004427.1\|55177_55807_-\|DUF1643-domain-containing-protein	unknown	unknown	gnl\|CDD\|377919

Protein	Function_ID	Function_description	E-value
NZ_CP015597.1\|WP_068003966.1\|40145_41447_+\|MFS-transporter	gnl\|CDD\|340924	cd17366, MFS_ProP, Proline/betaine transporter of the Major Facilitator Superfamily of transporters. This subfamily is composed of Escherichia coli proline/betaine transporter, also called proline porter II (PPII), and similar proteins. ProP is a proton symporter that senses osmotic shifts and responds by importing osmolytes such as proline, glycine betaine, stachydrine, pipecolic acid, ectoine and taurine. It is both an osmosensor and an osmoregulator which is available to participate early in the bacterial osmoregulatory response. The ProP subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.19083e-126
NZ_CP015597.1\|WP_068003969.1\|45973_46579_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379883	pfam16859, TetR_C_11, Bacterial transcriptional repressor C-terminal. This family of bacterial transcriptional repressors is characterized by the short approximately 50 amino acid stretch of residues constituting the helix-turn-helix DNA binding motif, around the YRFhY motif. The target proteins that are repressed are involved in the transcriptional control of multi-drug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. Another target protein is BetI, an osmoprotectant which controls the choline-glycine betaine pathway in E.coli.	8.69778e-12
NZ_CP015597.1\|WP_068003978.1\|56113_56509_-\|transcription-factor-WhiB	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	1.31524e-06
NZ_CP015597.1\|WP_068003964.1\|37769_40085_+\|hypothetical-protein	gnl\|CDD\|379155	pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases superfamily. This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.	1.17884e-06
NZ_CP015597.1\|WP_068003983.1\|57197_57530_-\|transcription-factor-WhiB	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	2.89499e-05
NZ_CP015597.1\|WP_068003998.1\|59477_59924_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	9.76692e-09
NZ_CP015597.1\|WP_068004421.1\|46837_48235_-\|MFS-transporter	gnl\|CDD\|365860	pfam00083, Sugar_tr, Sugar (and other) transporter.	6.36436e-52
NZ_CP015597.1\|WP_068003975.1\|50836_52234_-\|replicative-DNA-helicase	gnl\|CDD\|180177	PRK05636, PRK05636, replicative DNA helicase; Provisional.	0
NZ_CP015597.1\|WP_068003968.1\|42438_43263_-\|alpha/beta-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	4.21803e-27
NZ_CP015597.1\|WP_068004430.1\|60333_60915_+\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|180377	PRK06063, PRK06063, DEDDh family exonuclease.	1.57559e-76
NZ_CP015597.1\|WP_068003967.1\|41443_42319_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.19623e-09
NZ_CP015597.1\|WP_068004427.1\|55177_55807_-\|DUF1643-domain-containing-protein	gnl\|CDD\|377919	pfam07799, DUF1643, Protein of unknown function (DUF1643). The members of this family are all sequences found within hypothetical proteins expressed by various bacterial species. The region concerned is approximately 150 residues long.	4.13018e-45

>NZ_CP015597.1|WP_082902500.1|52230_53523_-|hypothetical-protein
MRAAKSPPRDRIAFEDAATVTERVRSHAASLGLRGSRSLVLAAVLTMLCTQWSKVTDDQMRLMQLVDTIAAAGGRRYDLKTIGRALASLAADELIVYRPAQGRGKHAFVAIHARFTEGIAVLERDDSQRVIVDYSRRSKPESVTFSEPRPYIDQKNYLPTLRNDRQRETSRPIGVKVPQGELKTVMDGLPEPMAHLPKHLRWKLGSEILQRLKRGWRADQILDVLNAEMPADVQRPYKLAIWRLQRNVVGSGPRLRPLQQAWDAAAAAAARAEAEDAKARRFADLAAVTSAEVREKALRASEVTFKRAVTDPMAALAVVARRASTKFPELPLAEALARWSDDVLATYEPELEIAELQPIPAATSLSTDLLMDLAISGGCSCVMCGSDRGVFRPELPLKSMATVCDRCWPHIAADLAAGENETELEEAISA
>NZ_CP015597.1|WP_068003975.1|50836_52234_-|replicative-DNA-helicase
MTDLDDAPARTRRRRQPEPYTDLDDGRQPPHDLAAEQSVLGGMLLSKDAIADVLEKLRPVDFYRPNHRQIYDVILDLFGQGEPADAVTVAAELDRRGVLRRVGGAPYLHTLIATVPTAANAGYYAGIVAEKAVLRRLVEAGTRVVQYGYAGADGADVAEVVDRAQAEIYDVTEDRGANDMVALEDLLQPTMDEIDAIQSGGNRSIGVPTGFAELDEVTTGLHGGQMIIVAARPGHGKSTLALDFMRSCSIKHGMPSVIFSLEMSKSEIVMRLLSAESRIKLADMRSGRMSDEDWTRMARRMGEISDAPLFIDDSPNLTMMEIRAKARRLKQKTDLRLIVVDYLQLMTSGKRVESRQAEVAEFSRSLKLMAKELDVPVIAISQLNRGPEQRTDKMPQLSDLRETGQLEQDGDMVILINRPDAYDRDSPRAGEADLILAKHRNGPTKTCTVASTLHMASFRDLARSY
>NZ_CP015597.1|WP_156526207.1|49192_50677_-|hypothetical-protein
MTGAALKPIIEAGTHRATWTLSKPPDPETWQVPGEVDLQELRQPAGGVFGKAPVHWTQSGNSMGAGFPQRFKYPLVRGELDGGLDVVLIDAILTVSGEGNRDGFVSHKGANAYFDAWAALVGHTMPTDGPVLVDGGVIQVPYLEAFGGRSPLAEVHMPDGNLYEQNEPLFSATIDKSSLQTWRDDDAEVSLYYQLSADVGGWYSFGLAFSPVVSVELTTPIPLVDFLMQWAWPMRGLIAAATGKRVDISYLTCSPVIAGDDRPHGPRQCQVFNASVTQTPYTSTKSLRDKYVSDIRLATDGQSLLELLRRWQALRDAENPILNTYDITAVGRNQHPRARYLLLLQALEGLCGFEKRFEEQQSTFVTERDSVMTRCQEVLDGAALRFVKKYLVKRRPVGLDSVLREMFRALPVDIELRLAEGALVKSVRSENPSITSTLDALRIVRNDLSHGNKTYDRRELSDAADTLERVVRAHLLRLLGTSDAILTRVLTPER
>NZ_CP015597.1|WP_068004421.1|46837_48235_-|MFS-transporter
MAASFDVIDDAPVTRFHRKLLIACCGGPFLDGYILTLIGVAMIGIKSEMPATSTQLGMLGAASLIGLFFGATLFGALTDKIGREKMYLLNLVIIASACGVTAVVAELWQLILLRFIIGLAIGADYPIATSLLAEFTPKKRRGFMIGASSLAWSLGAMAAFLFGYVVVSITGEHPWRLMLASGAVLGVLILLMRRGIPESPRWLASKGRAEEAKAVIEQVYGHEAAQQVDFSDIDNDVQKKRRFRDDLSLLVANGYWKRTVMCGVLYLAAVTPLYAILTFGGVILAATGLQGGNLDLLGELLFAAIWAVSVLPALKWVETWGRRPMALVPFALMAAALTGLALWAGAPTWFVIGAFLFYALTSGGPQVLQWLYPNELFPTEIRATAVGIAVGVSRIGAATGTFLVPVGIEALGINIVMGFAAGLTIFAFIVCYAWAPETTGRSLGEAASDSMNTDGRTPDSAPPLH
>NZ_CP015597.1|WP_068003969.1|45973_46579_+|TetR/AcrR-family-transcriptional-regulator
MVSGATDRPQARRPGGRNARVRERILAATTELVARDGIAGFRYEDVAETAGVHKASVYRNWPDREELVVEALLVYAESLASVADTGDIRRDLVDFLVALAAGLETPFGRALEQAIQPAGHDVTIRALTKVLDRRVAAMQQRVNNAVDRGELPPVDSSFLGEMISGPVHLIITRGMRPFARPDAERIVDVVLAGIQSTGIQT
>NZ_CP015597.1|WP_068003968.1|42438_43263_-|alpha/beta-hydrolase
MKDQSVTLPRAEDQSAERAGSTVRAGVFDVGYIDDGDGVPLVLIHGGESDRHQFTVLRRHLGAGLRVISYDQRDSGLTTNPPAPYGLADLADDLVARLDALKLSAAHVLGTSFGGAIAQHVALRHPARISSLILVATTPSYALGSPIVDALLSMSHQDRQNAATELFFTPKGRSQLYTPPGQTLTKRTAEQSRRRRNAARQHDIRDRLPSIAARTLILHGTEDQLAPWAGALLMAEQIPNAELQSIDGGRHAIAIEFANTIAARVREFLPLLKP
>NZ_CP015597.1|WP_068003967.1|41443_42319_+|DMT-family-transporter
MKAFYHARAAVLAGAAATALSGSFIKLSETSSSTSTFFRCLMAAPLLAYFAGREFRRRGLPSRRILASQILAGAMLGADFALWAQSVTLVGAGISTVVVNIQVVVVPVLTWAFLGIRPPLRFVAMLPLLLTGAAVAGGVTERGDNGQLLLGTVFALAAGVTYGIYLFIIGRTGVAKRLSSQVFVSTATAGIVGAGVGSFWDPVDLTPSWSSLGWLAVLALSSQILGWTLISAALPRVSADVGAALLLTQPVMAVGFAMLLVNERPSAAQMGGCAAVVAAVWFLTRSVTGRH
>NZ_CP015597.1|WP_068003966.1|40145_41447_+|MFS-transporter
MKPETRQTSVDQTTTVSPAMVRKAVTGAAVGNFVEWFDFAIYAYLATYIAANFFPSDNETTGLLFTFGAFAVAFVMRPIGGLFFGPLGDKIGRRRTLAIVVLATSTATFLMGLLPSYDALGVAAPLLLVLLRFVQAFAAGGEYGGGAIFIAEYAPRQRRGFFVSFLPASTFLAYLFAAVLITGLSTALTEQDMTSWGWRIPFLLAGPLGIAGLYIRSRLDETPEFRALEDAGSVTKTPLKETITKHWRPILQLIALVSCWVAAFYVAFAYMPALYHKLGYGDTESFVSMIVACMVPIITLPLLGTLSDRSGPRPIMLAASVGFAVSAYPLFMLINTGNLAAAYVAHGAIAFFVAALSSCIVMGTQLFETRVRYSGFAIGHNVSVAVFGGTAPMISTYLVSVTDDARSPSYYIVFTALVTLLGVLTVRNHLRRG
>NZ_CP015597.1|WP_068003964.1|37769_40085_+|hypothetical-protein
MNEHANHVEFQHIGLRGYSDRPSAAPGETVRFHLSAEEAGTCRVDLVRLIHGDTNPAGPGFREEVIDCPVNGHYPIAPQRTQFGSYAEIDDHGTAVGSAGLTLHAFINASLPHHSQQAILSRWAADRSCGWTLGIEQGRLTARLGDGAGVTAKIVSDRALFAGVWYSVTVVFDPDSATLRLTQRCVLNRVNSVFGPVVPLDSDSTVEAPCHIRPADACTPVLIGGNAESATLSGRTWVTDIFNGKVDSPSLYGRALPEVAITALSGGNVPTDPSALAAWDFSACSHSDEIRDVTDHGLHGRCINQPERAVTGWNWDSSEENFRHAPHQYGAIHFHEDSLDDCRWIPNIELTIPHSLPSDCYALRVRCRDAVDHIPLFVLPPKGTATADILFLIPTCTYLAYANWQIKPALPARQGAPGRTYVLHDFDVELNIHTRDYGLSLYDTYADGRIVKYSSWRRPIVNMRPMHRHREFAAPWGFSADLYLVDWLNAEGLGFDVATDHDLIEQGAELLSRYRVVITGTHPEYYTSSMIDAWEDYLANGGRGMYLGGNGMYWVSSLHPEKPWVVEVRKGESGTTRNRTTPGENYHSTSGERGGLWRYRNRAPQKVWGTGHSAFGFDSCSYYVQLPDAREPSVEWIFEGVDPTERIGDFGLIGAGAAGFEVDKYDLKLGTPPHTMLLASSTAHTRNYLLATEEMSVARPAIHGVEHPSVRGDITYFTTAHGGGMFSTSSIAWCGSLSSNRYDNNVARITGNVLRRFVDPAPLPDVVPLQP
>NZ_CP015597.1|WP_156526206.1|37326_37773_+|hypothetical-protein
MPVGSVDNALATRPTCGGANAALALSDPTCLRDKEADWFLFYDASRTATVRALLEKHPEIVEEHERNPLSRAGEQSQALQILLNFFRGHPTLGKFYVYAQRPWLDYRIATLTERGAPPTFIDQRSFPDENAAAHAVFVLRVESLGSLR
>NZ_CP015597.1|WP_068003977.1|54497_55181_-|hypothetical-protein
MRAAIDYEQHRFAVGAALSGCGYHAVDLEMLSSRISSAQPPGRSPAEVEAFSPCGARVQVVGKLGPFTYGSRWLTRLRCERCSWVVALNRGTVEQEIDLYTAEAGGDRRGALLREIFTSILADAPPGPESQAGHRSDLLAHAARHRPVLTVCAECSESGLTAAHGPSVSRCPHAAVVCQECSFTADSWAGEWNGVATGECVVASPCSTLLALADHYGIAVKGRGESL
>NZ_CP015597.1|WP_068004427.1|55177_55807_-|DUF1643-domain-containing-protein
MTLTLDLHLPHLTHSDSAAGFSEDRRYRYWLTRRWGSGPTLMFVSLNPSDADEHQDDPTTRRDVRFARKFGYDAVTLTNLYAARTPHPKELAGLDDPVGPDNDAHLDRAAVSHDVIVFSWGAHADPVRARSVATRLWRIAAAAGGSVAVLGWTAGEQPRHPLYLRGDTPLQCLTAGAHRDMLDVDPRWLRLLSDSTVVLDDDQGAGALS
>NZ_CP015597.1|WP_068003978.1|56113_56509_-|transcription-factor-WhiB
MHRRGQSIDTIADHLRVSTRSVSRYLERECPEPLAAEPEVTLQDFAMEGACGEFPEYDWSTRSPAMQAECKAICQYCPVLEKCRSYGLNQGRNDSGIWGALTKSEREREIARQRRSSRRHDIAAAAQQGAA
>NZ_CP015597.1|WP_068003981.1|56568_57201_-|hypothetical-protein
MSPTTTPARRRPQRRSTFASLTSSARLHLCAVAAEPEVRTRHAAALLAFTPTVRRIGTRMRIRFDHGPTALWLTEVLANKDVNLIDVGGDGGTVEVLNPQIVLGRYGFRDGRWVFGQGMTAALGISRGAVHAAGVFNGHGLKVACPSAPMMLTLTAVMSRLGINAKPTEGDPRAAIAPADVPGALEQLGVAEVAAEYRRLRETNSMGEQS
>NZ_CP015597.1|WP_068003983.1|57197_57530_-|transcription-factor-WhiB
MSEAAEMEWQKRAVCYLETSDAPEMWTSDRRPHGLLRKELQRMCARCPVRARCAGEAVFRDEESGTYAGVYLPQNIAANVGRRAAAMEELRVIAGLPSARDDVVHLGVSA
>NZ_CP015597.1|WP_068003985.1|57526_58069_-|hypothetical-protein
MRTPHLLASACTASDPEARYHQAELAIWDELTASLVEHPRIWRSPEEGAMVLAEEVDELWDEIRGNHIGRARAEASQVGAMALRFIADLYELDGPGGARERCRAAAVEQHDALALVGPPGRPCASSHEAFGYLKRELDALWSAIRFEEPARPIAARVAAMAVRFIAEITTSSTSVAVSVR
>NZ_CP015597.1|WP_068003991.1|58065_58416_-|hypothetical-protein
MTLLGQSQGRGYASTEARVPALSVRSSVLTCTNPVRSAAPAADEAELGFGSWKPSIFDDCPMCGKAPVEPVRVDGQLACRSCTSACTICGSACVPGDDACSECVRHLSLDREAIPV
>NZ_CP015597.1|WP_068003996.1|58613_59342_-|hypothetical-protein
MKFPRIHAPRPTPRMPELAGFEARYDLLPAVRPLHQPAEAIRPLHWWAKDLQAGGDLLVDARFDAMTMTATVSIRLSSYQVVSVVRHHDDKPQTPRTLADVLAESIWRLGSLGWSAEIEEAVAQLRAAGLMATPAKPDTRYLPGWVQQPDRGVRMAYWWAGILKQHGWKLYACGDAVARHGFIAEVPRADGESALVVYPGGMPDDGTAASALANHLARLGSRQRAFVQRVIGDAAAGEGRVV
>NZ_CP015597.1|WP_068003998.1|59477_59924_+|helix-turn-helix-transcriptional-regulator
MTRRVLRGFNAQAFSQARQHKGLSVSDLSRMAGVSDAAIWKWEAGTATPLIDLLARVMRILDAPIEQVITIPADERYPGDWRAIRGISQPELAATAKIPTTTLKGIERGDRNLSDANADKLADLLGISVEEYRAAYQRARERPAGTSV
>NZ_CP015597.1|WP_068004430.1|60333_60915_+|DNA-polymerase-III-subunit-epsilon
MTRPTEFVVIDVETSGFDPGCARVLSLAALTATADGTVVDCMHTLLNPGVDPGPTDIHGLTAPMLDGYPDFADITAQLVPILRDRILVAHNAGFDYAFLAAEAHRCDTELPVTNALCTLDLASRLDLGLDSLSLAALAAHFGVAQARPHDALDDARVLAELLPHLLRCATQRGIALPIRAAATLPPVLLRSAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP015597_1	1.1\|54174\|27\|NZ_CP015597\|CRISPRCasFinder	54174-54200	27	NZ_CP015597	Mycobacterium sp. YC-RL4 plasmid pMYC1, complete sequence	54174-54200	0	1.0

1. spacer 1.1|54174|27|NZ_CP015597|CRISPRCasFinder matches to NZ_CP015597 (Mycobacterium sp. YC-RL4 plasmid pMYC1, complete sequence) position: , mismatch: 0, identity: 1.0

tagtgctacccgccaggttcgtggtcc	CRISPR spacer
tagtgctacccgccaggttcgtggtcc	Protospacer
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Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP015596

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP015597

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection