CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP017080	Peribacillus muralis strain G25-68 chromosome, complete genome	4 crisprs	csa3,DinG,casR,DEDDh,cas3	0	2	5	0
NZ_CP017081	Peribacillus muralis strain G25-68 plasmid pG25-68, complete sequence	0 crisprs	RT,csa3	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017080_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017080_1

684693-685017

Orphan

Consensus_repeat	Method
CAGGTGCAGTAACTTCAGGTAAGAT	CRISPRCasFinder

5 spacers

The CRISPR arrays of NZ_CP017080_1

>merge|NZ_CP017080|1|684693-685017|CRISPRCasFinder
CAGGAGCAGTAACGTCCGGTAAAATTGGAGCGAATGCAGTTGGAACGACGGAGATTGCTACAAACGCAGTAACTACAGCTCAGGTTGCGCCGAACGCTATAACAGGAACCGAAATTGCTTCAGGTGGGGTAACGGCAGGCAAGATCGCGGCAAACGCAGTAACAGACACAACAATAGCTACAGGTGCAGTAACTTCAGGTAAGATCGGGACCGGTGCAGTCGGAAGTACAGCGTTGGCTTCAGGTGCAGTAACTTCAGGTAAGATTGCCGGCGGTGTTGTTGGATCAACCGAATTAGCAAATGGAGCTGTAACGTCAGGAAAACT

>NZ_CP017080|1|1|684693-685017|CRISPRCasFinder
CAGGAGCAGTAACGTCCGGTAAAAT	TGGAGCGAATGCAGTTGGAACGACGGAGATTGCTA
CAAACGCAGTAACTACAGCTCAGGT	TGCGCCGAACGCTATAACAGGAACCGAAATTGCTT
CAGGTGGGGTAACGGCAGGCAAGAT	CGCGGCAAACGCAGTAACAGACACAACAATAGCTA
CAGGTGCAGTAACTTCAGGTAAGAT	CGGGACCGGTGCAGTCGGAAGTACAGCGTTGGCTT
CAGGTGCAGTAACTTCAGGTAAGAT	TGCCGGCGGTGTTGTTGGATCAACCGAATTAGCAA
ATGGAGCTGTAACGTCAGGAAAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017080.1\|WP_064463926.1\|688381_689365_+\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|366659
NZ_CP017080.1\|WP_064463950.1\|671972_672263_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017080.1\|WP_064463939.1\|674603_679541_+\|phage-tail-tape-measure-protein	unknown	unknown	gnl\|CDD\|381605
NZ_CP017080.1\|WP_064463937.1\|679537_681223_+\|phage-tail-family-protein	unknown	unknown	gnl\|CDD\|368574
NZ_CP017080.1\|WP_064463941.1\|674078_674405_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017080.1\|WP_064463924.1\|689480_689954_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017080.1\|WP_064463920.1\|690684_691506_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239731
NZ_CP017080.1\|WP_064463918.1\|691728_691974_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017080.1\|WP_064463942.1\|673441_674017_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273713
NZ_CP017080.1\|WP_064463928.1\|687688_688045_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017080.1\|WP_064463916.1\|691978_692866_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377092
NZ_CP017080.1\|WP_064463935.1\|681236_683573_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377677
NZ_CP017080.1\|WP_064463911.1\|693338_693980_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017080.1\|WP_064463934.1\|683575_684007_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017080.1\|WP_064463946.1\|672659_673061_+\|HK97-gp10-family-phage-protein	unknown	unknown	unknown
NZ_CP017080.1\|WP_064463948.1\|672246_672663_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017080.1\|WP_064463930.1\|685151_687521_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274009
NZ_CP017080.1\|WP_064463922.1\|689969_690416_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017080.1\|WP_064463944.1\|673057_673441_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017080.1\|WP_064464210.1\|688064_688322_+\|holin	unknown	unknown	gnl\|CDD\|311099

Protein	Function_ID	Function_description	E-value
NZ_CP017080.1\|WP_064463916.1\|691978_692866_-\|hypothetical-protein	gnl\|CDD\|377092	pfam03649, UPF0014, Uncharacterized protein family (UPF0014).	0.00562138
NZ_CP017080.1\|WP_064463926.1\|688381_689365_+\|peptidoglycan-binding-protein	gnl\|CDD\|366659	pfam01471, PG_binding_1, Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.	1.48528e-12
NZ_CP017080.1\|WP_064463935.1\|681236_683573_+\|phage-tail-protein	gnl\|CDD\|377677	pfam06605, Prophage_tail, Prophage endopeptidase tail. This family is of prophage tail proteins that are probably acting as endopeptidases.	1.94137e-20
NZ_CP017080.1\|WP_064463939.1\|674603_679541_+\|phage-tail-tape-measure-protein	gnl\|CDD\|381605	cd13402, LT_TF-like, lytic transglycosylase-like domain of tail fiber-like proteins and similar domains. These tail fiber-like proteins are multi-domain proteins that include a lytic transglycosylase (LT) domain. Members of the LT family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, and the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL). LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	7.58167e-45
NZ_CP017080.1\|WP_064463937.1\|679537_681223_+\|phage-tail-family-protein	gnl\|CDD\|368574	pfam05709, Sipho_tail, Phage tail protein. This family consists of several Siphovirus and other phage tail component proteins as well as some bacterial proteins of unknown function.	1.01813e-13
NZ_CP017080.1\|WP_064463920.1\|690684_691506_+\|hypothetical-protein	gnl\|CDD\|239731	cd03762, proteasome_beta_type_6, proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.	0.000662024
NZ_CP017080.1\|WP_064463930.1\|685151_687521_+\|hypothetical-protein	gnl\|CDD\|274009	TIGR02169, chromosome_segregation_protein_related_ptotein, chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0.00603828
NZ_CP017080.1\|WP_064463942.1\|673441_674017_+\|hypothetical-protein	gnl\|CDD\|273713	TIGR01603, Uncharacterized_phage_related_protein, phage major tail protein, phi13 family. This model describes a set of proteins that share low levels of sequence similarity but similar lengths and similar patterns of charged, hydrophobic, and Gly/Pro residues. All members (except one attributed to mouse embryo cDNA) belong to phage of Gram-positive bacteria. Several are identified as phage major tail proteins. Some members of this family have additional C-terminal regions of about 100 residues not included in this model. [Mobile and extrachromosomal element functions, Prophage functions].	1.72203e-16
NZ_CP017080.1\|WP_064464210.1\|688064_688322_+\|holin	gnl\|CDD\|311099	pfam06946, Phage_holin_5_1, Bacteriophage A118-like holin, Hol118. This family consists of several Listeria bacteriophage holin proteins and related bacterial sequences. Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis. It is thought that the temporal precision of holin-mediated lysis may occur through the build up of a holin oligomer which causes the lysis.	1.12433e-09

>NZ_CP017080.1|WP_064463934.1|683575_684007_+|hypothetical-protein
MPLTGSVDIPFTNSTKVANDAVETAENSEVLAFEARNKAEAAQAAANTALTSANGKNTNYYDKSPPENPKGGDLWFKPSDDGSVTPLQFNGTTWLSVTDAIAQAAKDIVDSWTAPDGTSMNGAKIDGASISEEKMKWSTHLIF
>NZ_CP017080.1|WP_064463935.1|681236_683573_+|phage-tail-protein
MYTILNPDLDVVGILDLEGKGCKFYNDLKSTKLADDQGKIWSDTLTISVPYGYRETEYMTQGHHLLKEAGDGRFYCYRIFDWEDSAIGPVHVKTVQAINLLAWDLSHKNVPARTFSAATSRDGFDHILKQTGWEVEEDDFFGGTKTLEITAGNNGMYWADYLIQEFNIEIRAYVQLYNGKVSRMLIDLVDELGDSDGRRFEYSHGLAGVSRRGSDQEMYTKLFVYGGNNKDGIPVSISSVNNGRDYIVDDDANDLYNNGGPYLEGYIVNDQIQNPSGLLEWGKRQLDNWNHPKFTYQVDVAQLDFIPNIGDHMQVLDFSMQPEMTVSARVIQLDESEANPIDTKVILGEFVEIVTITPRDIWDLQAKASQAQQAAEASKGYRLEYFTPDGTDFADTTSTKRIVIRVYWGTLNVTEKIQPFDFSWQKIDSVGAHDTVWEEAHDGVGNIIEVGPEVVGCTIRCQVNTEDLDSAKPTLYAEETDAAYFATLQMTAPSGWTDFNKSVAQYAQVDYPRQEIYWSQKYYGDKRHDEDNAANHESYTITRTDMTGVIKDRMWCIRAGHGAQFGIEYVSGKMWIWSYYKYVAKNEWYVVRFPYTPNKILDWGDPSIQVLVKTPVPYRTNLDNRNGYVLCAFGVADPGMHVFKKSDILKGILNPVYAMKASDIDFFGKEQTYQSTCLDFPYIYFTSGSFTIDKDQKCLYCIDVRSKSLVYRIVYTFDKGTIQEIKDTPFHEPETISVYYDDTGKKWLIQGFAFGNEIIESSQRTNQLYRINEHKRGE
>NZ_CP017080.1|WP_064463937.1|679537_681223_+|phage-tail-family-protein
MSEEITFNYCGFDSKNDLFLITNEINRNITADITENVQDIPGMVGQLFQGNSYGQKVFDLEVTIQADSERDRVQKFHDLATLIMQTGNAEYPMVFSDEAEYTYYGHFSAVSKPERISQTSHWAKFTLTFSCSDPKGYGEYELINFTSNPITLTPKGTTECYPVFTCMPKKDVKKIAITDQDGNYVFIGADVDPDTGNSPINREPQVLNDPCNTLATWTKITSPTLTWELDNGVIGGDMTTTPNAMRVSTTSDGYANYGSPVKGKWHGPVRLQWLPGSYDDYRIRVRFVNKQTYNRAQGKVEMYLLDANGARLGKLMLKDNGTESKVVYVGFKLYNGSKVRDLYYGPGTIKKGKSKTITLKIKNGTKTVKEKGKTKTVQQWKTVKLDEDSDTSTFTNFYGYLELEKIGNKYRINIMKLDDNSNPAWSKPITKTWTDTKNEFPKDLAGIAFYAAKYDIYEDTTQPITRYRNNDLMVSDVKVWNIIDGGNGASLTEPTVIAHKGDEVKINCEDRTVYKNGDYYMKKLYIGSDFPTMQGGITQTFAFEPGLDEADWYLEYRPTTQ
>NZ_CP017080.1|WP_064463939.1|674603_679541_+|phage-tail-tape-measure-protein
MIGKNQPLGKMIIEMDLSSANFTKSLTAVNRSIKSAEREMKANMAVLNNADDKYGALGKQVTGLNKIMSLNEKRIQQLNEKRKNELKTNAESSKVIQDLNKEINTAIQRQSAWQKQVKDATGKMLDYTSSTKDLESELAKLKKKTDDHVESQKKSGLAFSAQKDKLKGLSDQAKIHQQIVDTQKQKVADLTREFGEHDRRVDEAKNKYKSLVDEQEKLNSSFNTLNRKISTVHPSIGRLADDIGKAESKLRGLSDSALTTGSTLNDTGRSISSSFSGITLAGGLGLGYTIKQAADFEQAMADIKALMSPQEWKQYGKQMNKLVNELGLETKYSNKEVAIGMQELIKAGVDLDAIMSGGLKSALSLATAGELELGQAAEIASTVLNSFRDDNIDMAKAADLLAGSANASATSVEEMNYSLSQVSSVAGPVGFSFADTNTALAVFAQAGLKGSDAGTSLKTMIMRLSPQTDAAATAMAELGIATTNTTAGYKYLVEKGIQPASRTVPDLDKAFKELAKQELGGAATKAKLRKEYDRLQKSSGYLSSSFFDEQGNVKSMSEVFNILQKSTKNLSKEQKINAFNTIFGSDAIRGAMIASKSGAEAFDEMGVAINKISADDVAKTKMDTLKGSIEKMKGEAESAATTFGTALIPTIKTVAGTIEDVVGWFNKLDQGTQHSIAKWTAIGVGVAGVGAALGFLTIGIGGLVTGVGKITLGGAGLLKFLSNGVINLGSFTSMTKGSTQSLNAETGALNTNTTALQRNNNARGGGVAGGKKTPAGTTVAPSMSTGSRAAKNAGKVGKGAKALKYVKGAGAIGTVVGVGALGYELATGSGTKESIGGGIGGTLGGIGGGAAAGAVLGSVVPGIGTAIGGIAGGIIGGIVGDKVGSSIGKVFDKQDKKEAARKKATKIAENGASLNLKIKGVSESTRKALGEYDKLYTGAKTKLNQLMLSNTVVNKKIKEDTFKQYNSMAKSVLSSLKDRHQEERVEAVKALKSNKELSQKDKDEALKKLDEKHKAEIEKVKGDNERVKQIMSNASKEKRALTQSEKLAINQINDRMYYTKIKKTVKSEDELTNINKRRSKQRHDITTKEMNQTIKAAKKEFEETKTNAEKKRESKVKNAKVQYEKLGVISKDEFDKIVDNADKEKEKTIEQARKKKDGVIKNATRQKEESVKASKKQKELNIENAQKETKGVGKAFDGLTGFLKDTVSWVKGLFGNKDKTSSPPQFKPGSIPENAKGTFQGPFKGGLSFVGEEGPELGYLPGQGLGLVGTTGTELMHLPRGSAILPHDKTKAVLSNYNFPTNSIPGFAKGTGDDDSFMDYIINGSNKVLNGIGTLGGKAVDAFDIITKGPSKLWNQLKNSLNFKDTFPTFANKWAGGNGVVAWAKNKAMDYFGSLFDGFGGGGSAAPVGKGVERWRSTVIQALGMSGLPTSANYVNAWLRQIKSESGGNEKAIQSTAVKDINYYTGNLARGLVQVIPPTFRSFAFPGHTNQMNGLDSLLAGMNYAKSRYGSNMLKYIGHGHGYENGGIITKEHLAMVGEGNKPEAIIPLSPNKRSRALELLAAVSSKIFGDPTKTSSSDNSLIFSLLKKQDAQIALLQQQNGLLSKILAKDNNTYLDGKALYNNNKKYSQSETKIRNMAKGVNSL
>NZ_CP017080.1|WP_064463941.1|674078_674405_+|hypothetical-protein
MYQLDLTNLKTKEVKTLTQTSVSGKQLITALKLNNAVYEDDVESTMALVTFVANLFGVTADDILDGIQAHELMEKLYEVYYQVLGYSEKKKQKLIQYMKDGEMEPVLD
>NZ_CP017080.1|WP_064463942.1|673441_674017_+|hypothetical-protein
MSIRVGFKRATVGVLDINGKVTKDVFVIEGKANKGGTKEATISGISPESIKSFASNVAYYVSAKGTGDIKTELSILDVPEEMVVAVLGRKKHTDGFTLIGERTEAPYVAVLLESEDATGQPVFFALLKGKMSAGDVSLKTSENKPAEPEDEKLTMECVANNDGETIAYGIGTELAAKLKTYAFPPATPPAG
>NZ_CP017080.1|WP_064463944.1|673057_673441_+|hypothetical-protein
MTDGLMVIYNQLNSNEIIVSHCNGRIKFYEYPETADASKPFIVIDPLDVPGPAVFASNENHANEYLYQIDVEASNRLLVKEIQREIKNELKKIGFGQLKDGLDEYFKETKRFVDARRYQGLIKEEVL
>NZ_CP017080.1|WP_064463946.1|672659_673061_+|HK97-gp10-family-phage-protein
MSVEFKGFEDIYKNLQNQLSEQALSRVTNKALIAGAKEVSKAVSDEFDDFKDTGASQDEIVIGKVTSSNGYKSVLVGWNGPKERYRLVHLNEFGYNRNGIKIKPKGYGSIQRAISNSEGAFLHAVTKEMKKQL
>NZ_CP017080.1|WP_064463948.1|672246_672663_+|hypothetical-protein
MKPKFNPNKIGSGELRTPVSFYQYAPSNGPEPGEGALAQVYECFAEVYSASMKDIEILNSGREQQQLKFMNTKNAVTINIRDSFGEYFPDTEHYAELEDDRYSKIIDGQRSYIRFNVIDVRPNLKNNDLITVLLAVIT
>NZ_CP017080.1|WP_064463950.1|671972_672263_+|hypothetical-protein
MEITCELLLQFKERMKISHTKEDDNLKKVLSFSYAAIKRKCGVFDIEKHEGGKELVFERARYSYNDAVEYFDENFASEITGLALDLYEGDPDETKV
>NZ_CP017080.1|WP_064463930.1|685151_687521_+|hypothetical-protein
MNVLDNSPSTGYISWTGVNISYKGKTYKIADANTNLAYIYWKFSDPLSFYGSNTYPTLGDDDLLVFVNKSGTHLVVPNTTILDGSLFVPGSILANALAANSVTADKILAGAISAGKLSVNAVGADNIAANAVITDKLAAGAVDVGKIAAGAVTSNTIAANAIGANHIAANVITTNKMAIADFTNLVQVDSESFPNGNPTVDINNLRYFKIGPSAYSRLLLAQSIMQEFKVGDEYYFGGVGYKEAAITNVSVIIRYFYSDGSYANAGSAIVPLTASTAKFGIGVKITTDIDPVKTLSRIDISFEKDASTTGYFYMRQLEIRKRYAGELIVDGSITATQLKVDKLSALASDLGDMRGGTLNISNNNTNWIQGTTFVRMDKGQIWVTDKNPDDTDRKNADDLHIEDGALWMTRHGNDTYGEFGMSMAPHYFSYHQDDPVTGRTVYRTTLTAALFENPEITTETLNAKWANVNGLLEIVGALRIDGPIVMFGTGFFDMNNNQLQNVDRITFADAGGNEGLEWLGGNGWKIFESPDDASNAKGPLQFFTGTVRRATIGATGNFYITGNRFLIQNSGGSYEAEGTLVMKNASTGTELSIAGTSASPYIMSPALYSRTYSDAPNAFITSNGVLGRSTSASKYKIGIEKSKFDAHKILQLNPKTWYDKSATEAYADALTAELSGEEVDWDKVDIPEVKRVPGLIAEDVIEAGLPEYASYGPYKEDGTREVEGLMYDRLWTLLIPVVREQKEEIASLKDKIKQIETATEEKITTQQQTIENMAALMAKMEQRIAALEN
>NZ_CP017080.1|WP_064463928.1|687688_688045_+|hypothetical-protein
MEEMDMPQRLDNHEQRISQLETNYGEVINKISSMEKGQLEIQNVVLKSSGDQKDLLNKLIEHSLGITVKQEETKGEVSKLKISSRKEIVLGLLGGGGFVGILTAVIAFWGEITNTFGG
>NZ_CP017080.1|WP_064464210.1|688064_688322_+|holin
MQQVLIFTTLLAPIVAGAVQVVKQTVTLPNNVLPILSLVIGLAVGSVAFPFTDMDLVLRLWAGAFAGLGGTGLYELVAKREGSSR
>NZ_CP017080.1|WP_064463926.1|688381_689365_+|peptidoglycan-binding-protein
MNFTNLPQLVDMRGKLKSKGTYSKRTKAITHRVWHHSLTKKNLAGSDAASFADYHVGTLGWPGCGYALVIEPKNLIDTPNGKRARIVYSNDINNRTYHVGDSNQFSLGICVAGDYRYDTMDEATLASIAELHAALVKDGIGQYDKAHNEMPGYSWKACCEYNYREAFDWKGAKTPTKPAPAPDVYTIQEGDTLWSIAHKDGTGGVQVADLIKANPGINPTKLKIGQKINFGIAKDFVAKPGNVIKPDIKVEVTPKAIVPYPGIVLKEGAKGMKEVDIKRVQRASGMAEKDVDGKYGPKTTKVVKAYQKRHGLSQDGRVGPDTWNRMF
>NZ_CP017080.1|WP_064463924.1|689480_689954_-|hypothetical-protein
MYLIGNVLIALLFAVLLFVLFTFVNVHSFSKHPFTSFFLTLSFLYLFLIMPFKGTNKIYKSKNKIMKSIKKDRTLSSADRHQIEKIISNKLKIFYVLFKSGAFSYNELMLELSQWYLNKPFKFKLNIKIKVTKAKHEYENAYISSLQKDLKEAVAFA
>NZ_CP017080.1|WP_064463922.1|689969_690416_-|hypothetical-protein
MKSIKCIVLVASLFLINYVGGVPGDLKNLFITHTIFLTPYILELHKFLLVKFDNIVYWIVRIIYGLGCTVLITNILGIFGILTMNAKKSFVINKDYSLPVPFSIGYDRYILIATLIYVAIFMVTILFDHLVYLQVNANKEESEKENIA
>NZ_CP017080.1|WP_064463920.1|690684_691506_+|hypothetical-protein
MTIALSIKINDGIVLAADSATTITEYHNGQELKRVYNNANKVLQLHKEIPAGLITWGNGSIGKESIATIVKNYRELISTGEDKIDKNHYTLEDLANTFHSFILEKYKNEYSHLKGNGPYTGFTISGYSANASYAEEWRVELNGMIENQPFLLSSQDHTGMKWAGQPEAISRLVNGYSMQLQSVLLSTGIPEDQVDIIMAQVGNQISSPIINAPMPIKDAIDLADFLIDMTAKFSTYTAGDQSVGGPIEIASITKHEGFKWAKRKLYFTSDYNF
>NZ_CP017080.1|WP_064463918.1|691728_691974_-|hypothetical-protein
MNINIKVYLQSNNTKFLKSGSFPVSNSDFKKDPDWAAAIAAYEWIREIKMSFSISEDFRIDQVIYNGENDITELVRTVRSI
>NZ_CP017080.1|WP_064463916.1|691978_692866_-|hypothetical-protein
MLAFLGLLCIVATIFFIIAAGISAIRKTGKVKKMLLSSAGSFILLFVVAFIAVAIEDAESSVVPEEKTAKITKGEYNKIKEGMTLEEVKTIVGGKEKSQDKFDDFVEYNFDGENGVENDAYVILDFTYDKTVETKFEYGLLSPRDDTEVSTEEDTEEYTTEDLKYHIEYQLTEDNDFNIVNLEVNEHMGTDTEDDNIVILTLLGSENLTAKMTANGLFEDSNVVFQNLFENTYVEEAVLFWQLPVTDSTGNTSDQNVLKIRLTRNTFENINWEDFNSHNYKIVAEDYEELIQFPE
>NZ_CP017080.1|WP_064463911.1|693338_693980_+|hypothetical-protein
MKKTINLGVATMLALGAVGGTFGSLTTTAHASENSSNEITEVPNATEVEDTTTLISEIESYIHKDAQGFLYVDSDIPIDLYNEYKVDLLEEYFEEINEQVANGQVEVNDDLSIIDKSFTTFASKGYTSKKFWWGERATYTNAQTKKTVGQLEDAGIDIAFIGAAYLLLPPIAGGVGLTSAYCGKLAKSMKSKNKGKGVIVDMTWALAYKVKSR

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Crispr_ID: NZ_CP017080_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017080_2

984588-984737

Orphan

Consensus_repeat	Method
AAAGGAAGAAGCAGCTGAAAACAATAATGGAAGTGCAGTAGGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017080_2

>merge|NZ_CP017080|2|984588-984737|CRISPRCasFinder
AAAGGAAGAAGCAGCTGAAAACAATAATGGAAGTGCAGTAGGGCAACTGCCAAGTAATCCAGAATCCAATCTCACTCCGGAAGTAAAACCGGAAGAGGAACCAAAAAAGGAAGAAGCAGCTGAAAACAATAATGGGAGTGCAGTAGGGCA

>NZ_CP017080|2|2|984588-984737|CRISPRCasFinder
AAAGGAAGAAGCAGCTGAAAACAATAATGGAAGTGCAGTAGGGCA	ACTGCCAAGTAATCCAGAATCCAATCTCACTCCGGAAGTAAAACCGGAAGAGGAACCAAA
AAAGGAAGAAGCAGCTGAAAACAATAATGGGAGTGCAGTAGGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017080.1\|WP_064466821.1\|980190_982017_+\|APC-family-permease	unknown	unknown	gnl\|CDD\|372624
NZ_CP017080.1\|WP_064466820.1\|982304_983159_+\|GRP-family-sugar-transporter	unknown	unknown	gnl\|CDD\|227309
NZ_CP017080.1\|WP_064466815.1\|987143_988544_-\|sigma-54-interacting-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226350
NZ_CP017080.1\|WP_064466808.1\|994851_995484_-\|DNA-3-methyladenine-glycosylase	unknown	unknown	gnl\|CDD\|234840
NZ_CP017080.1\|WP_064466828.1\|971380_972097_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226870
NZ_CP017080.1\|WP_064466806.1\|997407_998214_+\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
NZ_CP017080.1\|WP_064466814.1\|988803_990468_+\|alpha-keto-acid-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|226470
NZ_CP017080.1\|WP_156775683.1\|978942_979113_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017080.1\|WP_064466817.1\|985636_986182_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223508
NZ_CP017080.1\|WP_064466807.1\|995601_997167_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP017080.1\|WP_064466819.1\|983174_983960_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181585
NZ_CP017080.1\|WP_064466825.1\|975671_976898_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340897
NZ_CP017080.1\|WP_064466826.1\|973643_975140_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|368260
NZ_CP017080.1\|WP_064466824.1\|976913_977591_-\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
NZ_CP017080.1\|WP_156775682.1\|972517_972691_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017080.1\|WP_064466810.1\|992806_993406_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP017080.1\|WP_064466811.1\|992093_992792_+\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|200582
NZ_CP017080.1\|WP_064466809.1\|993629_994790_+\|galactosyldiacylglycerol-synthase	unknown	unknown	gnl\|CDD\|340861
NZ_CP017080.1\|WP_083231946.1\|986463_987045_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_CP017080.1\|WP_167353383.1\|979610_979748_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP017080.1\|WP_064466821.1\|980190_982017_+\|APC-family-permease	gnl\|CDD\|372624	pfam13520, AA_permease_2, Amino acid permease.	6.509e-30
NZ_CP017080.1\|WP_064466820.1\|982304_983159_+\|GRP-family-sugar-transporter	gnl\|CDD\|227309	COG4975, GlcU, Putative glucose uptake permease [Carbohydrate transport and metabolism].	6.02239e-116
NZ_CP017080.1\|WP_064466815.1\|987143_988544_-\|sigma-54-interacting-transcriptional-regulator	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	8.60809e-145
NZ_CP017080.1\|WP_064466808.1\|994851_995484_-\|DNA-3-methyladenine-glycosylase	gnl\|CDD\|234840	PRK00802, PRK00802, DNA-3-methyladenine glycosylase.	3.10824e-89
NZ_CP017080.1\|WP_064466828.1\|971380_972097_+\|hypothetical-protein	gnl\|CDD\|226870	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	6.11651e-95
NZ_CP017080.1\|WP_064466806.1\|997407_998214_+\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	4.13694e-100
NZ_CP017080.1\|WP_064466814.1\|988803_990468_+\|alpha-keto-acid-decarboxylase-family-protein	gnl\|CDD\|226470	COG3961, COG3961, Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only].	0
NZ_CP017080.1\|WP_064466817.1\|985636_986182_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|223508	COG0431, COG0431, Predicted flavoprotein [General function prediction only].	1.21685e-43
NZ_CP017080.1\|WP_064466807.1\|995601_997167_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.46307e-81
NZ_CP017080.1\|WP_064466819.1\|983174_983960_+\|SDR-family-oxidoreductase	gnl\|CDD\|181585	PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional.	0
NZ_CP017080.1\|WP_064466825.1\|975671_976898_-\|MFS-transporter	gnl\|CDD\|340897	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Escherichia coli 2-nitroimidazole transporter (NIMT) and cyanate transport protein CynX, and similar proteins. NIMT, also called YeaN, confers resistance to 2-nitroimidazole, the antibacterial and antifungal antibiotic, by mediating the active efflux of this compound. CynX is part of an active transport system that transports exogenous cyanate into E. coli cells. The NIMT/CynX-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.20186e-147
NZ_CP017080.1\|WP_064466826.1\|973643_975140_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|368260	pfam05043, Mga, Mga helix-turn-helix domain. M regulator protein trans-acting positive regulator (Mga) is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions. This domain is found in the centre of the Mga proteins. This family also contains a number of bacterial RofA transcriptional regulators that seem to be largely restricted to streptococci. These proteins have been shown to regulate the expression of important bacterial adhesins. This is presumably a DNA-binding domain.	4.59628e-13
NZ_CP017080.1\|WP_064466824.1\|976913_977591_-\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	4.81554e-46
NZ_CP017080.1\|WP_064466810.1\|992806_993406_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	3.76156e-33
NZ_CP017080.1\|WP_064466809.1\|993629_994790_+\|galactosyldiacylglycerol-synthase	gnl\|CDD\|340861	cd17507, GT28_Beta-DGS-like, beta-diglucosyldiacylglycerol synthase and similar proteins. beta-diglucosyldiacylglycerol synthase (processive diacylglycerol beta-glucosyltransferase EC 2.4.1.315) is involved in the biosynthesis of both the bilayer- and non-bilayer-forming membrane glucolipids. This family of glycosyltransferases also contains plant major galactolipid synthase (chloroplastic monogalactosyldiacylglycerol synthase 1 EC 2.4.1.46). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	4.21822e-49
NZ_CP017080.1\|WP_083231946.1\|986463_987045_+\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	2.19091e-51
NZ_CP017080.1\|WP_064466811.1\|992093_992792_+\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|200582	cd10959, CE4_NodB_like_3, Catalytic NodB homology domain of uncharacterized bacterial polysaccharide deacetylases. This family includes many uncharacterized bacterial polysaccharide deacetylases. Although their biological function still remains unknown, members in this family show high sequence homology to the catalytic NodB homology domain of Streptococcus pneumoniae polysaccharide deacetylase PgdA (SpPgdA), which is an extracellular metal-dependent polysaccharide deacetylase with de-N-acetylase activity toward a hexamer of chitooligosaccharide N-acetylglucosamine, but not shorter chitooligosaccharides or a synthetic peptidoglycan tetrasaccharide. Like SpPgdA, this family is a member of the carbohydrate esterase 4 (CE4) superfamily.	2.36233e-64

>NZ_CP017080.1|WP_064466819.1|983174_983960_+|SDR-family-oxidoreductase
MYKDLEGKVVVITGSSTGLGKAMAIRFAQEKAKVVVNYRSKPEEADSVLEEIKAASGEAIAVKGDVTVEGDVMNLVDTAVKKFGKLDVFINNAGIENPVPSHEMPLSDWNRVINTNLTGNFLGCREAIKYYVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGVKLLTETLALEYAPKGIRVNSIGPGAIATPINADKLEDPKKKKDLESMIPMGYIGKPEEIAAVAVWLASSESSYVTGITLFADGGMTKYPSFQAGRG
>NZ_CP017080.1|WP_064466820.1|982304_983159_+|GRP-family-sugar-transporter
MDIVLALLPAVFWGSIVLFNVKLGGGPYSQTLGTTIGALIFSIGVYIFADIKLSLLVFGVGIVSGLFWAVGQANQLKSIDLMGVSKTMPISTGLQLISTTLFGVIVFHEWSTMKAVILGVLALVFIIIGIVLTSLEDKESKEGKSGNLKKGIIILLISTFGYLVYVVVARLFDVDGWSALFPQAIGMVIGGLLLTFKHKPFNKYAIRNIIPGLIWAAGNMFLFISQPRVGVATSFSLSQMGIVISTLGGIIILREKKTKHQLIGIVIGIILIIIAGVMLGLAKS
>NZ_CP017080.1|WP_064466821.1|980190_982017_+|APC-family-permease
MLSSIKRFLIGRPLKSNALGDQKLNKTKALAILSSDALSSVAYGPEQILIVLITVGAAAFWYSIPIAIGVLILLTALILSYRQIIFAYPHGGGAYVVSKNNLGINPGLIAGGSLLVDYILTVAVSVSAGTDAITSAFPSLHAYNVVIAIIFVILLTILNLRGVTESASVLAYPVYLFVLALFILIGVGLYKILTGDVSPELHASIGTPVAGISLFILLRAFASGSSALTGVEAISNAIPNFKDPAPNNAAKTLIAMGSLLAVLFTGIVFLAYYLSIVPSAEVTVVSQIAEQIFGRNFMYFFIQGTTALILILAANTGYSAFPLLAVNLAKDKFIPRMFTIRGDRLGYSNGIIILGLASIILIVAFGGHTENLIPLYAVGVFIPFTLSQSGMMVKWIREKPKGWIVKLTINSIGAIISFIVTLIFFLTKFVHVWPVLVFLPIIILMFHRIRRHYDAVGDQLRITTCEPTLPIQGNVIIVPVAGITHVVENSLNYAKSLSADQIIAVYISFEREDEKKFEEKWKNWQPDIRLVTLHSYYRSIIQPLTKFVDTVEHKARESNYQVTVIIPQFIPKKGWHNILHNQSSLLIRAYLLYRRNVVVTTVPYHLKK
>NZ_CP017080.1|WP_167353383.1|979610_979748_-|hypothetical-protein
MPKHTVKPIISDEFLDEVVKEINEQFGGPLNENDHRNQLDGEETR
>NZ_CP017080.1|WP_156775683.1|978942_979113_-|hypothetical-protein
MYMHHSPRTGIIHTELPYLGMASQVYTGYLEFQKNFEAVSETENRQSLSAPLDEFE
>NZ_CP017080.1|WP_064466824.1|976913_977591_-|FadR-family-transcriptional-regulator
MAISKANRLSLVEQVVSQIETLIESGEWEIGNQIPPEMDLIKHFDVSRNTLREAIRSLVYAGLLVTKQGKGTFVKSTSSLGVAFQRRIQRSSLFETLEVRHALEREGAQLAALRRDQEDIKKLRFHITACRIAAEEKDIKAYEQSDIQLHKSIMGSSHNALLIDLYEHMEDSLHESIHQIVRMSSEANFHLSIHCTLVEAIIERDVKRATEAVNEYIAQFKKSLK
>NZ_CP017080.1|WP_064466825.1|975671_976898_-|MFS-transporter
MAIQQTVNQLEQKKINNNSRIGLLIIGVILIGANLRAPLTSVGPLVTSIRDALGITNALSGSLTTLPLLSFALLSPFAPRIARRFGMELTLFASLILLTIGIAIRSIGGVPTLFMGTILIGLAIAIGNVLLPSLIKHNFARNIGLMTGVYAVSMNLCGAMASGISIPIAFSSGMGWTGALGCWGILSLITVFFWMPQLRRPANGDKNVQTAQKQKNMNLWRSGLAWQITFFMGLQSFIFYTVITWMPEILEQKGLNADEAGWMLSIMQLAVIPITFIVPILAGRLQSQRILVVPPAVFLVAGIFGILYGSELFIPVCMMLIGIGVGTIFSLSMMFFSLRTRSTHEATELSGMAQSFGYLLAAIGPVLFGWLHDLTHSWTVPLLMLVAVSALIFIVGMRAGKNEYVTAH
>NZ_CP017080.1|WP_064466826.1|973643_975140_+|helix-turn-helix-domain-containing-protein
MNRFNDRYSELVYHLFYEDNWCSLNELSKKTGYSKSTLWRDLLHTDSTLPPEWKIEKNEAQGVRLIKPKNGTIEELWFHLRSENTYFQTLELILLNNGVTINYITQHVHISRSTVYRQLEKIEEVVKSAGVQLTHSPYKIVGDEKKIRRFIMQYVEYMSGNLNDFITSFDIKEFQEHVLKLLKEHKTSLHMGAIQRLAIILHISNIRITHSCFVTIPQAVIDENEHSTVFEISKKLFKFMEKISNREKQIQEIFFFSLYLMSEEMSLNRTQELRYIRSKLNSDSGMPLNHFLINLSREIGLDVSQDDIFMYEFAQTLRGITFDLKLKTDTRINNILQFVPYFEKNPLFGMIQEIAKNISREFSISFEDIEILEIFMLVQASILRKKNQMVIETALVCRSYVEKDYIREVLKHHFGNQLNIYVMDFSDIDSLYRKNGFDLLITTDLGQLINIEHIPIYKVSSFPTPSEIKEIKIFTRENFIDRYGLNHNILYPFEDDID
>NZ_CP017080.1|WP_156775682.1|972517_972691_+|hypothetical-protein
MRMTFKKIYRDIDKLVYLSNKRNGLYGKEIESTRKRLVENIKAIELHTIVSKNEDSA
>NZ_CP017080.1|WP_064466828.1|971380_972097_+|hypothetical-protein
MIDIHSHILPGVDDGADNIGESIVMARKAVEQGITNIIATPHYHKGKYDNDKEKVEGETRKLNQVLYDLEIPLKVWPGQEIRITDELLEDFDHNQIITLNGLQYILLELPSNHVPRYTERLIHDLQIKRITPIIAHPERNLEIIRNPDLLEYLVWNGAYSQITAGSITGKFGWKTKRFSNYLIGSDLAHFIASDAHNTGNRGFQLKEAYKMVQKNFGQKVVEEFNENAKSVLYGIKVK
>NZ_CP017080.1|WP_064466817.1|985636_986182_-|NAD(P)H-dependent-oxidoreductase
MKVVAIVGSIRKESYNLKLAKYIQTRYQDRFELEILNIRELPFYDQDIENDPPAVVKEFKGKVADADAVLWVTPEYNGTIPGVLGNAIDWLSRVDKVLIGKPSWIMGASMGQLGTVKAQLHLRDILFALGISSPLLPGNEVYVGAVHDKIDNDGSLTHESTVQFIDTVVDNFIDWYNHHTR
>NZ_CP017080.1|WP_083231946.1|986463_987045_+|signal-peptidase-I
MQFPISKVGENLKNDRKREVYSWSKSILFAVMIVFICQQFLFTPITVKGKSMEPTYENDDRIVVTKVGKPERFDMIVFYAPDADEKYIKRVIGLPGDRIEMNDDVLYINGKNYSEPYLKTKKAGIPPGEKLTENFTLKGLHGIDKVPAGHLFVMGDNRRNSWDGRRFGFIPEQSLVGKVEFRIYPLNEMGVPK
>NZ_CP017080.1|WP_064466815.1|987143_988544_-|sigma-54-interacting-transcriptional-regulator
MMSDNNVKRILDSIISTSNNNITVTDEKGFILFTNPNHWWIYGIEPDHYLGKSVYQLETEGILSPSISAMVLKEKTPVQIMQHTKTGKIVMSTAYPVFDDDGELIRVVSYTQDQTEIRKLQDQYGQLEKKIQEYQHEVEELREQEELIYRSKEMRQIAKTIHRVSKTDATVMLLGESGVGKSVFARRLHTQSYRSKDPFIEVNCSTIPESLFESEMFGYEAGSFTGAQKHGKQGLVEQADNGTLFLDEIGELPLDMQVKLLNVLQEKRFKRVGGKKEHKIDFRLVTATNQNLEEMVEKGKFRLDLYYRLHVIPIQIPPLRERKEDIAILINHNLEIINKKYNTNKKLHPSTYEILIGHKWSGNVRELENLIERLILTSEDSIIIPSFLPAHLHGQEFPESNDAPFKIDHMKVDDSDLKTALEQVEKWMLMKASKQCKSTYEMAKSLGISQPSVVRKMKKYKGQVPL
>NZ_CP017080.1|WP_064466814.1|988803_990468_+|alpha-keto-acid-decarboxylase-family-protein
MENRTLGQYLYDCLREEGITEIFGVPGDYNFSLLDTLEDYEGIEFINGRNELNAGYAADAYARVKGISALITTFGVGEMSASNAIAGAYSENVPLIHIVGSPKSVMQKEKAIAHHTLMDGDFDVFRKVYEHITGYTVILTPENAAREIPAAIMLAKSKKKPVYMVVAIDLVTKPLIFHSEPLENEAKTNQETLQAAVEHIRKMLEPVKKAALLVDMKTLRYNLGGSVQQLAERLNVPVASLMQGKSGFDESHPQYIGVYGGAFGRQEVTKIVEEADCLIAVGPVWSDTNTSKETAKLDPLKMVEIQPDSLKVGAASYMDVKAEDVLHALKDIGFKMEESVAAMAFPYDTMADDPSAPIEAASYYPRIQQMLKEDDIVVTETGTFSYGMSQVRLPKGVTYIAQGGWQSIGYATPAAFGACIADKNRRVLLFTGDGSLQLTAQEISSMLENGCKPIIFILNNDGYTIEKFLNVKVDIDKQTYNEIPAWNYTKLPEAFGKDAFTARVETNRELDEAITNAQDLNGEKLCVIELIVKDPMDGPEYMQKMRQYLEKQEN
>NZ_CP017080.1|WP_064466811.1|992093_992792_+|polysaccharide-deacetylase-family-protein
MVIWMVGFTILLALFLLYTIIPTLLIRVFGWGIIKNTKKNSGVALTFDDGPNPEYTIRLLDLLEKYEVKASFFVVGSKVRHNPEIVKRMHEDGHVIGIHHFDHVSSWILSPFQLKKQLGMTEKAITECTKEKVIFYRPPWGHFNIFTPILSKNYKVIMWSAIFGDWKVDTCKNNLLGQLRTTSNEGEILLLHDCGETLGADKEAPRHMIEKLEIYLRESKEKGTEFVTLRDL
>NZ_CP017080.1|WP_064466810.1|992806_993406_+|DedA-family-protein
MNIDTILHFINIYGYLIIFLFLFLGIVGIPAPEESLLFLIGVLIAQHKLSFGPSLSSAFLGAFTGMLAAYVCGKYVGYPFIDKYGKYVGITNERWEKTKINYMENIQKTVIFGFYIPGMRQISPYFAGISRIPFRKFFLLSLLGTFLWTVPFIVAGYYLGNAFNINPQYVPYLGVLFLFIFVFYVTFKYIKRKKQKSNN
>NZ_CP017080.1|WP_064466809.1|993629_994790_+|galactosyldiacylglycerol-synthase
MKKVLFLPLFRMQSGHHQVAEALMDMLEKHSNGIVLKKVDLISYTNNSLEKMLTNGYLKWIRYAPETYDLAYKNLFYVPSSREWALKWYQPIFLRKMEQLIAEENPDLIVCTHGFPSYLLSQLKMKGKCDIPIINVYTDYFINNVWGTQGIDAHFLPSQEVKEKLMNMRHIPKQRMMVTGIPVHEEITKIASEQKNSNRPKILISGGNSGLGGILNVAAELKSSIEFDYVVLCGNNIKLYDEIDSWNLAHIKPLTYITSRVEMNKLYEEVNAIVTKPGGVTISEALRKRLPIFVHSMLPGQEAINLKYLKEQKLVFELNQKWPFEQQMKETLKNQEIMEKWNTSIESYHKEIELDKPEGIVEVMKLIIDLEKASEFPYMTSQTKVI
>NZ_CP017080.1|WP_064466808.1|994851_995484_-|DNA-3-methyladenine-glycosylase
MTNKTNHSILPVDFYEQPTLELAKSLLGCLLVKKTADGTASGFIVETEAYMGPLDRAAHSFGNRRTKRTEVMYGMSGLIYTYVMHTHTLVNVVSGGIDNPEAVLIRAVEPYSGLELMQERRGIADIRKWTDGPGKLTKALGITMEDYGQSFTAPPLYLAAGKQPEHISSGPRIGIDNTGEAKDYPWRFWVTGSPYISRTIKKRMMPSPSK
>NZ_CP017080.1|WP_064466807.1|995601_997167_-|MFS-transporter
MQMEKKAVNTRLVLAGLIIGMFFSSLEQTIVGTAMPTIIGELNGFTIFAWVTTAYLIASTTVVPIVGKLSDLYGRRSLYLLGTIIFTIGSFLCATATSMEQLIIYRGLQGIGGGMIMPLSQTIIGDIFSAEQRAKWQGVFGGLFGLSSVIGPFLGGLIVDHISWHWIFLINVPTGLLSAILIYVGLKHESISKTEKVNIDYLGIFTLIPGIVLLLLGLTFGGDKFEWVSLESLLIFGFTLIFIALFIIFERKAVEPILDLSLFKNRVFATTNILGFLLGLGMFGAIMFVPLFMQGVLGVSPTKAGSTMTPMMVGLILSSIVGGRLLLKFRFRTVLTFGMAFATLGFFLMSTMDGSTTIFTAYSFMAVLGIGMGLVMPTLMIAVQNEFPKSQLGSVTAASTFFRSIGGTMGITILNAVMNHNLQQNMDDAAGSEKNPLLHEALTALADKTDKLFNIMLYPENLKVPAEVSSVLIKTIENAWIDAFSSVFVTGIFFVAAGILVALSVGSGRIKKDQETEKDLS
>NZ_CP017080.1|WP_064466806.1|997407_998214_+|pyrroline-5-carboxylate-reductase
MNKRIGFIGCGKMGEAILEGILLAEVISPDRIMVSTASMGSMTKITTKHKVKGTIDNAEVAAFADILFLGIQPAMHKQVLEEVKDHMKGSTVIITMAAGINISLIENSFERKVKVVRTMPNTPSLVGEGLTAISLNDEITDDDIAAVTALLNSFGKTEILHEDMMDAVPAISGSSPAYVYMFIEALADGGVRDGIPRKQAYRMAAQAVMGAAKMVLETEKHPAALKDDVCTPGGSTIAAVAALEEAQLRSGILRAMKACTDKTKGIGQ

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Crispr_ID: NZ_CP017080_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017080_3

2060049-2060144

Orphan

Consensus_repeat	Method
AATAATCTAAACGTTTACATTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017080_3

>merge|NZ_CP017080|3|2060049-2060144|CRISPRCasFinder
AATAATCTAAACGTTTACATTTTATTTTCCGTAATGTAATGATTATATCGTTGTTAATCAGGTGATTTGATTAAAAAATCTAAACGTTTACATTTT

>NZ_CP017080|3|3|2060049-2060144|CRISPRCasFinder
AATAATCTAAACGTTTACATTTT	ATTTTCCGTAATGTAATGATTATATCGTTGTTAATCAGGTGATTTGATTA
AAAAATCTAAACGTTTACATTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017080.1\|WP_064466192.1\|2060157_2061180_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP017080.1\|WP_156775930.1\|2067473_2068046_+\|sulfurtransferase-TusA-family-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP017080.1\|WP_064466197.1\|2053231_2054404_+\|thiolase-family-protein	unknown	unknown	gnl\|CDD\|238383
NZ_CP017080.1\|WP_064466190.1\|2062003_2063350_+\|L-fucose:H+-symporter-permease	unknown	unknown	gnl\|CDD\|340952
NZ_CP017080.1\|WP_064466200.1\|2049354_2049903_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP017080.1\|WP_064466187.1\|2065618_2066191_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017080.1\|WP_064466186.1\|2066503_2066983_+\|DsrE/DsrF/DrsH-like-family-protein	unknown	unknown	gnl\|CDD\|379334
NZ_CP017080.1\|WP_064466193.1\|2059062_2059830_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017080.1\|WP_167353396.1\|2054494_2054701_+\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|376923
NZ_CP017080.1\|WP_064466196.1\|2055641_2056826_+\|thiolase-family-protein	unknown	unknown	gnl\|CDD\|238383
NZ_CP017080.1\|WP_156775734.1\|2054697_2055072_+\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173847
NZ_CP017080.1\|WP_064466198.1\|2051891_2053166_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP017080.1\|WP_064466191.1\|2061283_2061949_+\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234784
NZ_CP017080.1\|WP_064466189.1\|2063425_2064439_+\|aldose-1-epimerase-family-protein	unknown	unknown	gnl\|CDD\|185703
NZ_CP017080.1\|WP_064466185.1\|2067121_2067418_+\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP017080.1\|WP_064466195.1\|2056900_2057305_+\|PaaI-family-thioesterase	unknown	unknown	gnl\|CDD\|239527
NZ_CP017080.1\|WP_064466183.1\|2068198_2069326_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293810
NZ_CP017080.1\|WP_064466194.1\|2057378_2058974_+\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|341259
NZ_CP017080.1\|WP_064466188.1\|2064452_2065373_+\|ribokinase	unknown	unknown	gnl\|CDD\|274000
NZ_CP017080.1\|WP_083232245.1\|2050189_2051800_+\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|341259

Protein	Function_ID	Function_description	E-value
NZ_CP017080.1\|WP_064466192.1\|2060157_2061180_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	6.53374e-121
NZ_CP017080.1\|WP_064466197.1\|2053231_2054404_+\|thiolase-family-protein	gnl\|CDD\|238383	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.	0
NZ_CP017080.1\|WP_064466190.1\|2062003_2063350_+\|L-fucose:H+-symporter-permease	gnl\|CDD\|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.1925e-127
NZ_CP017080.1\|WP_064466200.1\|2049354_2049903_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	4.20728e-39
NZ_CP017080.1\|WP_156775930.1\|2067473_2068046_+\|sulfurtransferase-TusA-family-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	1.82866e-26
NZ_CP017080.1\|WP_064466186.1\|2066503_2066983_+\|DsrE/DsrF/DrsH-like-family-protein	gnl\|CDD\|379334	pfam13686, DrsE_2, DsrE/DsrF/DrsH-like family. DsrE is a small soluble protein involved in intracellular sulfur reduction. The family also includes YrkE proteins.	1.35761e-78
NZ_CP017080.1\|WP_064466189.1\|2063425_2064439_+\|aldose-1-epimerase-family-protein	gnl\|CDD\|185703	cd09269, deoxyribose_mutarotase, deoxyribose mutarotase_like. Salmonella enterica serovar Typhi DeoM (earlier named as DeoX) is a mutarotase with high specificity for deoxyribose. It is encoded by one of four genes beonging to the deoK operon. This operon has also been found in Escherichia coli where it is more common in pathogenic than in commensal strains and is associated with pathogenicity. It has been found on a pathogenicity island from a human blood isolate AL863 and confers the ability to use deoxyribose as a carbon source; deoxyribose is not fermented by non-pathogenic E.coli K-12. Proteins in this family are members of the aldose-1-epimerase superfamily. Aldose 1-epimerases, or mutarotases, are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Site directed mutagenesis of this latter histidine residue renders Salmonella enterica DeoM inactive.	2.28641e-165
NZ_CP017080.1\|WP_064466194.1\|2057378_2058974_+\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|341259	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD. This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions.	0
NZ_CP017080.1\|WP_064466196.1\|2055641_2056826_+\|thiolase-family-protein	gnl\|CDD\|238383	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.	0
NZ_CP017080.1\|WP_156775734.1\|2054697_2055072_+\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	4.58114e-52
NZ_CP017080.1\|WP_064466198.1\|2051891_2053166_+\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.86136e-52
NZ_CP017080.1\|WP_064466191.1\|2061283_2061949_+\|deoxyribose-phosphate-aldolase	gnl\|CDD\|234784	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional.	4.32634e-122
NZ_CP017080.1\|WP_064466185.1\|2067121_2067418_+\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	6.04037e-28
NZ_CP017080.1\|WP_064466195.1\|2056900_2057305_+\|PaaI-family-thioesterase	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	2.48573e-30
NZ_CP017080.1\|WP_064466183.1\|2068198_2069326_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293810	cd07724, POD-like_MBL-fold, ETHE1 (PDO type I), persulfide dioxygenase A (PDOA, PDO type II) and related proteins; MBL-fold metallo-hydrolase domain. Persulfide dioxygenase (PDO, also known as sulfur dioxygenase, SDO, EC 1.13.11.18) is a non-heme iron-dependent oxygenase which catalyzes the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria. Mutations in ethe1 (the human PDO gene) are responsible for a rare autosomal recessive metabolic disorder called ethylmalonic encephalopathy. Arabidopsis thaliana ETHE1 is essential for embryo and endosperm development. Bacterial ETHE1-type PDOs are also called Type 1 PDOs. Type II PDOs (also called PDOAs), are mainly proteobacterial. These enzymes belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	5.18525e-60
NZ_CP017080.1\|WP_167353396.1\|2054494_2054701_+\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|376923	pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal domain. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain.	9.20311e-14
NZ_CP017080.1\|WP_064466188.1\|2064452_2065373_+\|ribokinase	gnl\|CDD\|274000	TIGR02152, Putative_ribokinase, ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not. [Energy metabolism, Sugars].	3.4846e-139
NZ_CP017080.1\|WP_083232245.1\|2050189_2051800_+\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|341259	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD. This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions.	0

>NZ_CP017080.1|WP_064466193.1|2059062_2059830_-|hypothetical-protein
MAGLLLVSLGVWAFNNLGSDNEPQKNESKKIEKANIPEVEEFGGIHLEKVGDKVRQKGWGTLTLLETMPINKSFELAHMEITIKDIRRILLSSLSKEAETELESYTGLSFEEAYSIYYKDNLSMEEIDQKAAWSKADIGEQVSYLEITYSVENKDSKELQFFAMEHVTFNGNLTYDVPTKNFIHSGDTFIGTKKVSRSDYQPGEKREGTIGLLIDPEEHMGELDSFSFTTDDISDGESHELLMRGTSFEVPLRGE
>NZ_CP017080.1|WP_064466194.1|2057378_2058974_+|long-chain-fatty-acid--CoA-ligase
MKTWQRFYPEETPPEIEIPLLSLYGLLERSANLYPSTKAVIDSGRELTYLELKLAADRFAVYLFNSGFQMNDRIAIMLPNCLEYIIAYYAIHRLGGVVVQVNPLYQSNELDEILRDSEATWFIGREEQQEILRVTGFSELVTFIPADISRKGGPISSTMDKELPELVLDPKKAVALLQYTGGTTGKSKGVMLTHFNLIANVFQDFSFTAEALELQSPGERMLGLTPLFHVFGNGRLNSAVYAGATYITLEKFEIAKVVDLIRKHRPTIFPGVPTMYIALLNHPGLTADDLSCFKYCSCGSAPLPIEIIRQFQTNFSLSISEGFGMSETSPTTHRNPVNGQKKPGSIGIPYPNTDARIVDMKTGTKVMPTGDAGELIIKGPQVMKGYWKNPMDTATALREGWLYTGDIATMDEEGYFYIVGRKKDMIIASGYNIYPTEVEDIIYQHPAVKETCVYGVPDTYRGETVKAAVVIKEGRSVSEAEIREFCLQRLARYKVPRKFEFTNQLPKSAVGKILRRILLEEEMQRHTAGEI
>NZ_CP017080.1|WP_064466195.1|2056900_2057305_+|PaaI-family-thioesterase
MSVEVEDIRNQFESSAFFSHIGFEITRFEEGNVMIKLNIEEHLLNVNGTLHGGIHATMLDTILGMVTRSVTRSKVVTTSLTVHYLASISSGELFAEAKVLQKGHKIAFTEGEIKDANGNIIAKGTGIFKIIREK
>NZ_CP017080.1|WP_064466196.1|2055641_2056826_+|thiolase-family-protein
MSEEIVIVSAVRTPIGRYGGALKNISSGHLASIVINEAIKRANIAAEQVDEVIFGEVRQTTESSNVARVAALRSGIPDSAPAFTVNRLCASGMQAIASAAQQLSSGQANIVVAGGTESMSRAPLYLRSARFGGDRTELVDSNTEAGQQPQEKYGSRLGMGITAENVAQRYNISREEQDAFSIESQRRAAQAIETGIFKEEIVPVQVSEKKGTVTIEVDEYPRPDTTLERLAALRPAFKENGTVTAGNACGRNDGASALVLMKASEAKRLHLKPIAKIVDWAVAGVSPDVMGIGPVPAVGKLLERTGKKIEEIGLIELNEAFASQALAVIRELALDESKVNVNGGAIALGHPVGSTGARIVTTLIHELNRRKERYGIATLCVGGGQGMAIMVETI
>NZ_CP017080.1|WP_156775734.1|2054697_2055072_+|acyl-CoA-dehydrogenase-family-protein
MISAHTGIGSTGLVKLASEHLKAKSLPDMAAGTKIAAFALSEPGAGSDATNLATSAEKKGNCWVMNGTKHFITNGPIADVFTVFALTDKSKGAKGGITAFLVERDFPGLTVGKKDKKKGLRGSY
>NZ_CP017080.1|WP_167353396.1|2054494_2054701_+|acyl-CoA-dehydrogenase-family-protein
MKDMIGHFVEREVASFAIQIEEEDAIPEHLVEQAKNLGLFGISIPEQYGGIGLNTVGKATGRIMALFH
>NZ_CP017080.1|WP_064466197.1|2053231_2054404_+|thiolase-family-protein
MKRDAVIVSAVRTAIGKQGGALASVPAHVFGAEVMKEAIKRAKVNPEMIDDVIMGNVLSGGGNIARLTALETGLSIQLPGLTVDRQCGSGINAVNLAAQAIYASEGEIYIAGGVESMSRAPYLMDRPEKAYNAKLPQFRKSQLSPKEMGDPPMGITAENLAGKYEVSREEQDEFALQSQKKMAKAMEEGRFDEQIMPMSILGRKGETREFKVDEHPRPQITKEGLANLSPAFLEDGSVTAGNCSGLNDAASALVIMSREKAEEWGIKPLATIKAQAVAGVDPNYMGIGPVPAIKKVMEKLKLTLADMDIVEINEAFAAQVIACNRELNMDAAKINVNGGAIAHGHPLGATGAILMTKAVYELKRISGRFALITACIGGGQGIATIIEREA
>NZ_CP017080.1|WP_064466198.1|2051891_2053166_+|MFS-transporter
MRWVVLILLFFGAVINFADKSIVGLAAVPIMKEFNLSYAEWGLVGSSYYWLYPVTGVFGAAWADRLGAKKVLGFIMLTWTVLQFGVLAIAALPFLILYRILLGAFEGPYSPIAYSHADKWFPPKLKGFANSVVVGGGTVGAMIVAPILVSLITIFGWKVAFAVLGAASLVWFFLFQFLTKENPVEVHEQQKKKKAKLEKIKWKDFLVLLGSPTALFTTLAYFSTYILVVWFSVWLPIYLVEAVKMTPGQMGTSVAVIGVISVCIYMGVSMISDHLFKKNQNWRSSRVFVVAGSMILGALFFSSIMIFQNPIWVIGAMCLAKGLTYAILPIGPTIMINEMQERGGLMTSILTSSGNIAGIIAPLVTGYIISLAGGNQLLGYNLSILFMATLVLVFGILFALFVKPVKSTRDRTNEHTGDMDLKSS
>NZ_CP017080.1|WP_083232245.1|2050189_2051800_+|long-chain-fatty-acid--CoA-ligase
MRNTISRPWERWYVGRMKSMKLPEVSVYSLLERTAREFPHHTAIIYEDQTLDYRNLKMQVDKLAGKWREMGFTKGERIGLMMANHPYFIISYYAAQALGLIVVQTNPLYTPRELLQILLDSGAQYIVFDETAANTVDETKAIYEFAVCMKAGADQNGTCSLQAMIQSGDAIQAAESISPFEDIAVIQYTGGTTGKMKGAMLTHHNLTSNVIQSYEMYGDSMIPGKEIVLAATPLYHVYAMTSAMNLGIFLGATILLIPKFDLQQVLANIKKYRPTFFPGVPKMYNAFVNHPEIETYGLDCLKSCSCGSAPLPVEVIKRFEMLTGAQIGEGFGLSEASPSTHRNPPFGKRKVGSIGIPFPGTDCLIIDDDNNEVPNTSVGELLIKGPQIMKGYWNNEGETKKALQNGWLYTGDLAVMDDEGYFYIVGRKKEMIIVGGFNIYPQELEGVLYEHPAIKEAAVVGIPHKEKGEVVKAFIVPKENASIDIEEIEGYCYSQLTPYKVPKVFEIRNELPRNTVGKLLKRLLVKEELEREGKND
>NZ_CP017080.1|WP_064466200.1|2049354_2049903_-|GNAT-family-N-acetyltransferase
MIYDSLNKTITTKRLLLRLFQTSDAMEVTNLCNNYNIYKNTLYLPYPYSMEDALSWIENHLHNFNDNSSYEFAITDKVTGKLFGAIALSYNQNFNNGEIAYWLGEEFWGKGYATEAGLAILEFAFTNKQYHKVFARHFSSNPASGRVLEKIGMRKEGVLREHIMKEKQYEDLVHYGILKHKN
>NZ_CP017080.1|WP_064466192.1|2060157_2061180_+|LacI-family-DNA-binding-transcriptional-regulator
MESKPNIQDVANLANVSIATVSRVINNQGGVRKVTEERILKAIKELGYIRSAAARTMKLKETNTIGVIVPDIKNPFFPLVMAGIEQKAREKEYFTILSSTNESPKIEEEIVKNFIERGVDGVIITTANENGDHLKLLEEQGIPVVAVDRSIKKLEVDTVLVDNKKGAYQAVQQLILQGHEKISIICGPLNTTPGLERYLGYQQALADYKIDLDDRYVIQGDFGEQSGYQCTEKLFGLDEKPTAIFSSNNMMTIGCMKALEDLNWRLGSEVSFIGFDDVDIATFLNPKLSVVARPMNSIGEIAFLLLHERIGLKGNLPKREYSLAPELKIRQSCRLVNQTF
>NZ_CP017080.1|WP_064466191.1|2061283_2061949_+|deoxyribose-phosphate-aldolase
MNLAKMIDHTSLKAEATKEQIMALCDEAKEYGFASVCVNPVWVKTAAEKIKGSDVKVCTVIGFPLGTSTTVIKAMETENAIQNGAQEVDMVLAIGLLKSGEHEEVEADIQAVVEAAGTKALVKVIIETSLLTEEEKISACELSLRAGADFVKTSTGFSTGGATVGDVALMRKVVGDKAGIKASGGIRDLKDLKAMAGAGATRIGASSGVAIMKGEAVEGEY
>NZ_CP017080.1|WP_064466190.1|2062003_2063350_+|L-fucose:H+-symporter-permease
MNKQNLIQLSDGYLNRTPIFQFILLSLLFPLWAVAASLNDILIAQFKHVFELTDFASALVQSAFYGGYFLIAIPASMVIKKTNYKFAIITGLLFYIIGCSLFYPASHMATYTMFLFAIFSIAIGLGFLETAANTYSSMIGPRKYAILRLNISQTFYPIGAISGILLGKYLVFQEGASLEARMATMSPAEAQAFGLKMLENTLEPYRYMIFVLIGILILFILTKFPSCKPEMKINNASGKSPSIMKTLKYLGGHKRFRKGVAAQFLYVGMQVTVWSFTIRLALDLNPDINERTASTFMVYSFSAFFAGKFIANFLMTRFSPAKVLVSYSIIGSVLLAYVAFVPNMSAVYAAVAVSMLFGPCWATIYAETLDVIQDKKYTETAGAILVMAIVGGAFIPALQGFASDYLGSMQLAFLVSMACFIYVGLYFFGEMKTEKVTIDPAEKSASSL
>NZ_CP017080.1|WP_064466189.1|2063425_2064439_+|aldose-1-epimerase-family-protein
MKGIIGLQRNYFKESRTAFFTNEEFSVTLFRYQSGIEAIEVTNSRGRMVVLPYMGQMIWDLEFDGVDLKMKSMFDQPKKADSVIDTYGCFAFHSGLISNGCPGADDDHEMHGEMPCAEMDSAWLEITDTSVKICGRTEYIKGFGHHYLASPSVEMFKAKGSIQMTMAVKNLSGEVMPLQYMCHTNYAYLDNAEMKQNIPNSAFKLRGSIPKHVKPTDKWLDYNKKLLNGQESINALNDPGMYDPEIVFFADELNLYQEVAVFEMASPEGITFFTSFSTAELNYATRWLLHNANQHVASFVLPATCRPEGFSAAENAGTLMMLSAGEERNFTIVTGKK
>NZ_CP017080.1|WP_064466188.1|2064452_2065373_+|ribokinase
MDIAVIGSNMVDLIAYIDDMPKEGETLEAPDFKIGCGGKGANQAVAAAKMGSKVMMITKVGDDLFADNTIQNLESHGIDTEFTSKVTGTSSGVAPIFVDQESKNRILIIKGANQHLLPADVDRAAEKLKKASLIVLQLEIPLPTVYRAIDFGCEHNIPVILNPAPASKELDFDYVCKSDFFIPNESELEILTGMPIATDEQIKEAASILLNKGVKNVIVTMGNRGVMWVTKEKNVKVRSEKVAAVDTTGAGDAFIGCFAHFIVKNGDVLMSIKKAAAFAGLSVTKRGTQSSYPTREELEVFITSRT
>NZ_CP017080.1|WP_064466187.1|2065618_2066191_+|hypothetical-protein
MLLNNNGNEKGQQLNNGSMLLREEMQAIDSWIAKMGKHHFFDTTAQRMISVTTTLNLQYEIVGHGLNRIVYDLNNGFILKVALSEVGLMANANEAYIYNHCREEVRKYICPVSEFGSGWIIMKKMDTSVRHAVIDYTKLIKLEFIFLKYGMLPIDLRIANVAFSEENKMVVIDYGLFTMDLKSPVLRWFV
>NZ_CP017080.1|WP_064466186.1|2066503_2066983_+|DsrE/DsrF/DrsH-like-family-protein
MTEQKKTTIILFSGDYDKTMAAYIIANGAAAYDHEVTIFHTFWGLNALRKEEPLKVKKGRLEKMFAKMMPRGADKMGLSQLNFAGMGPKMIKHVMKKHNAMSLPHLIELAQEQEVKLIACTMTMDLLGLQQEELLDGIEYAGVAAYLAEAEDGNVNLFI
>NZ_CP017080.1|WP_064466185.1|2067121_2067418_+|rhodanese-like-domain-containing-protein
MREILTNEVNDLMNENKPVHVIDVREVDEVKAGKIPGAMNIPLALVEFTMQDLDKSKEYILVCRSGGRSSRAALLLEERGYKVLNMVGGMDEWKGATE
>NZ_CP017080.1|WP_156775930.1|2067473_2068046_+|sulfurtransferase-TusA-family-protein
MITTNSVCDAKGLACPMPIVKTKKAMNNLEAGGVLEVQATDKGSTADLKAWAESTGHQYLGTVEEGMVLKHYLRKASVEDQQEQIHEKIITNEMLLKKIEAKKNTIILDVRERAEYAFNHIPTAISFPIGELEQRLEELDKEAELFVICRTGSRSDLAAQKLTAAGFKEVINVLPGMNQWSGPSQESIQK
>NZ_CP017080.1|WP_064466183.1|2068198_2069326_+|MBL-fold-metallo-hydrolase
MTFKSMTAAEVARKVINEDELFILDVRNGTDFFDWKIEGEKFELLNIPYFDLLEGVEGIIERIPENKDILVVCAKEGSSIMVAEMLSEAGLHVAYLKGGMKAWSEHLEPVKIGTLTDGGEIYQFVRHGKGCLSYLVVSNGEAAVIDSTRMIDVYLDFAESIGAKIKHVFDTHLHADHISGGRNIAKKTNATYWLPTKDATEVTFDYEPLESGTVITIGHTAIDIHALYSPGHTIGSTSFVIDEKYLLSGDILFIGSIGRPDLAGLGDDWVVDLRETLYIRYRELSEELIVLPSHFMIHEELNDDGSVAKKLGYLFAENHGLNITDESEFRALVTGNLPPQPNAYQEIRETNMGKIQPNDEKQREMEIGPNRCAVR

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Crispr_ID: NZ_CP017080_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017080_4

3683337-3683445

Orphan

Consensus_repeat	Method
TGGCGAGTAAAGTGGCGGTATTCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017080_4

>merge|NZ_CP017080|4|3683337-3683445|CRISPRCasFinder
TGGCGAGTAAAGTGGCGGTATTCGCGAGTGAAACTGCTTATTGGCGAGTAAAGTGACGGTATTCGCGAGTAAAACTGCTTATTTGGCGAGTAAAGTGGCGGTATTCGCG

>NZ_CP017080|4|4|3683337-3683445|CRISPRCasFinder
TGGCGAGTAAAGTGGCGGTATTCGCG	AGTGAAACTGCTTATTGGCGAGTAAAGTGACGGTATTCGCGAGTAAAACTGCTTATT
TGGCGAGTAAAGTGGCGGTATTCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017080.1\|WP_064465737.1\|3691003_3692149_-\|GerAB/ArcD/ProY-family-transporter	unknown	unknown	gnl\|CDD\|281794
NZ_CP017080.1\|WP_064466129.1\|3676402_3676885_-\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176908
NZ_CP017080.1\|WP_064466126.1\|3671568_3672234_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017080.1\|WP_064465765.1\|3692170_3693394_-\|Ger(x)C-family-spore-germination-protein	unknown	unknown	gnl\|CDD\|274338
NZ_CP017080.1\|WP_064465740.1\|3686944_3687205_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017080.1\|WP_064465738.1\|3690773_3691007_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017080.1\|WP_083232131.1\|3679050_3680535_+\|spore-germination-protein	unknown	unknown	gnl\|CDD\|377020
NZ_CP017080.1\|WP_064465743.1\|3684090_3684375_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224913
NZ_CP017080.1\|WP_064466133.1\|3681834_3682992_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NZ_CP017080.1\|WP_064466125.1\|3670088_3671291_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|366353
NZ_CP017080.1\|WP_064466132.1\|3680539_3681685_+\|Ger(x)C-family-spore-germination-protein	unknown	unknown	gnl\|CDD\|274338
NZ_CP017080.1\|WP_064466127.1\|3672258_3673614_-\|arsenic-transporter	unknown	unknown	gnl\|CDD\|238538
NZ_CP017080.1\|WP_064465739.1\|3687400_3690607_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223627
NZ_CP017080.1\|WP_064465744.1\|3683598_3684039_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP017080.1\|WP_064466130.1\|3677216_3677732_-\|bacillithiol-transferase-BstA	unknown	unknown	gnl\|CDD\|183954
NZ_CP017080.1\|WP_064466128.1\|3673839_3675921_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP017080.1\|WP_064465766.1\|3686414_3686729_+\|multidrug-efflux-SMR-transporter	unknown	unknown	gnl\|CDD\|224987
NZ_CP017080.1\|WP_167353431.1\|3686079_3686415_+\|multidrug-efflux-SMR-transporter	unknown	unknown	gnl\|CDD\|224987
NZ_CP017080.1\|WP_064465742.1\|3684847_3685819_+\|multidrug-resistance-efflux-transporter-family-protein	unknown	unknown	gnl\|CDD\|379245
NZ_CP017080.1\|WP_064466131.1\|3677975_3679076_+\|endospore-germination-permease	unknown	unknown	gnl\|CDD\|273333

Protein	Function_ID	Function_description	E-value
NZ_CP017080.1\|WP_064465737.1\|3691003_3692149_-\|GerAB/ArcD/ProY-family-transporter	gnl\|CDD\|281794	pfam03845, Spore_permease, Spore germination protein.	5.92804e-64
NZ_CP017080.1\|WP_064466129.1\|3676402_3676885_-\|SRPBCC-family-protein	gnl\|CDD\|176908	cd08899, SRPBCC_CalC_Aha1-like_6, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	6.14267e-46
NZ_CP017080.1\|WP_167353431.1\|3686079_3686415_+\|multidrug-efflux-SMR-transporter	gnl\|CDD\|224987	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism].	2.2825e-24
NZ_CP017080.1\|WP_064465765.1\|3692170_3693394_-\|Ger(x)C-family-spore-germination-protein	gnl\|CDD\|274338	TIGR02887, Spore_germination_protein_B3, germination protein, Ger(x)C family. Members of this protein family are restricted to endospore-forming members of the Firmicutes lineage of bacteria, including the genera Bacillus, Clostridium, Thermoanaerobacter, Carboxydothermus, etc. Members are nearly all predicted lipoproteins and belong to probable transport operons, some of which have been characterized as crucial to germination in response to alanine. Members typically have been gene symbols gerKC, gerAC, gerYC, etc. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Sporulation and germination].	2.00507e-100
NZ_CP017080.1\|WP_064465739.1\|3687400_3690607_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223627	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].	2.62314e-108
NZ_CP017080.1\|WP_083232131.1\|3679050_3680535_+\|spore-germination-protein	gnl\|CDD\|377020	pfam03323, GerA, Bacillus/Clostridium GerA spore germination protein.	4.0895e-176
NZ_CP017080.1\|WP_064465743.1\|3684090_3684375_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|224913	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription].	1.57908e-17
NZ_CP017080.1\|WP_064466133.1\|3681834_3682992_+\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.69779e-145
NZ_CP017080.1\|WP_064466125.1\|3670088_3671291_-\|C40-family-peptidase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	4.79404e-20
NZ_CP017080.1\|WP_064466132.1\|3680539_3681685_+\|Ger(x)C-family-spore-germination-protein	gnl\|CDD\|274338	TIGR02887, Spore_germination_protein_B3, germination protein, Ger(x)C family. Members of this protein family are restricted to endospore-forming members of the Firmicutes lineage of bacteria, including the genera Bacillus, Clostridium, Thermoanaerobacter, Carboxydothermus, etc. Members are nearly all predicted lipoproteins and belong to probable transport operons, some of which have been characterized as crucial to germination in response to alanine. Members typically have been gene symbols gerKC, gerAC, gerYC, etc. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Sporulation and germination].	3.04274e-55
NZ_CP017080.1\|WP_064466127.1\|3672258_3673614_-\|arsenic-transporter	gnl\|CDD\|238538	cd01118, ArsB_permease, Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life.	2.1973e-134
NZ_CP017080.1\|WP_064465744.1\|3683598_3684039_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.86991e-18
NZ_CP017080.1\|WP_064466130.1\|3677216_3677732_-\|bacillithiol-transferase-BstA	gnl\|CDD\|183954	PRK13291, PRK13291, putative metal-dependent hydrolase.	5.08025e-100
NZ_CP017080.1\|WP_064466128.1\|3673839_3675921_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.89903e-55
NZ_CP017080.1\|WP_064465766.1\|3686414_3686729_+\|multidrug-efflux-SMR-transporter	gnl\|CDD\|224987	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism].	7.57322e-27
NZ_CP017080.1\|WP_064465742.1\|3684847_3685819_+\|multidrug-resistance-efflux-transporter-family-protein	gnl\|CDD\|379245	pfam13536, EmrE, Putative multidrug resistance efflux transporter. This is a membrane protein family whose members are purported to be related to the DMT or Drug/Metabolite Transporter (DMT) Superfamily. Members are all uncharacterized.	1.84673e-138
NZ_CP017080.1\|WP_064466131.1\|3677975_3679076_+\|endospore-germination-permease	gnl\|CDD\|273333	TIGR00912, Spore_germination_protein_A2, spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases. [Transport and binding proteins, Amino acids, peptides and amines].	3.16408e-21

>NZ_CP017080.1|WP_064466133.1|3681834_3682992_+|IS256-family-transposase
MTQLQFNLDLDLLKVSIMSSTMDDVIKSAVVLILNEFMEKERDAYLQVSSYERSSERQDYRNGYYERDFTMSIGKIKLKVPRTRTGDFSPSVFEKYARCDQALILSMLEMVINGVSTRKVTHVVEQLCGESVSKSFVSSLTQKLDPIVNGWATRPLNITYYPFIFVDAMYIKVREHQQVVSKAVYIATALTKQNKREIIGVHIDHVESFECWSQFFKQLKSRGLQSPKLVISDAHQGLQKAIQRDFIGTSWQRCNVHFKRNILEKLPKKGSSDIRLMIKRVFEAVTIEDCRLFKAELIDKFGEELKYEKALQILDEGFEDTVQYMNHPEKIRQHIRSTNSLERLNQEVRRRERVIRIFPNTQSAFRLIGAVLMQYQDTVYAKKKG
>NZ_CP017080.1|WP_064466132.1|3680539_3681685_+|Ger(x)C-family-spore-germination-protein
MFRITKILLIVPLLLLLSGCWDEKTIQDFHYVTAVGIDFKDGEYIVYAQLVDFAAVAKTETKPTQNPPVYVGRERGRSISAAINQLMHNTQQALYIGHISTFVISENVLNQQSTEIVDYIYRNQLLRYSANIFATKSSMDELFSINGYFNLSPLYTTLYLPDDVYRHRSFIKPITVQRYYSMQREKASTTILPSISWNSKVWKEKDKKRKSLYMDGAYVIYYKVSQPWFSEQELSGVRWLTKKTNKAPVNISLKKEDIYASFSHPHHKVKPVFKNGKYKFDIDVVVPGKILGLDTQMNMNKIIRTFENQIKKEIQSTFEAGLKKNADPLSLGKILYIQETKYWQKNDIKEPKDYLDADSINTINVKVNILNTGGLEAKPLK
>NZ_CP017080.1|WP_083232131.1|3679050_3680535_+|spore-germination-protein
MRMKRSKNEPELPELKEETFRQLFRKSSDIIFDTIYIGETEDPMPALIFYCSGMVDISLLNEGILEKLNKMMELDEKIDAKETINKLNPLVDLTKVTIDDEFISVQQLIFSGYALLFIPSTQKVYSMNLSNVPNRQPEESSFEVSVRGPRDGFVEDLSINTALVRKRLKTKSLAYEDFIVGRRSQTKVALLYMDDIINQDLVTNIRARLNSIDIDILVSSQQLEEMISNSKYSIFPLTHYTSRPDFVVEALNQGRFILIVDGMPTVIVAPSTLLLQIKTAEDSNLPYLYVSLERLLRFLGLGITILLPGFWISISAFNIEQVPFPLLATITLSRFGLPLSATMEFILMLILFELFRESGVRLPKAVGQTVAVVGGLIVGDAAIRAGLTSQTMLVVTAVTSVASYTLVNQSLTGAVTILRMFVLALSCIYGIYGCIIGFLSIVTLLSRLDSFGVAYMGGLNPPRFTKILDSIIKRPWNSMAKRTLGARDKTRKGQ
>NZ_CP017080.1|WP_064466131.1|3677975_3679076_+|endospore-germination-permease
MKKISSMQVLSICFLSIGLLNHVILIPFLLSSGGRDAWFFSLLTFGLIPLWVYLLSRIIKNMNNESLANWLENKFGKPIKHIVLFFIMIYLMSMVLATTKETMDWITTSFLFETPSLAIIIPFALLCIFLAHSGLRSIAISSSVLLPIVVILGFFVATGNIPTKDYSHLLPLFENGYFHGIKAFQFSSYGFAELILFAFFQEKLTDTLSRKGLVILCLGLLFLLIGPLTAAIAEFGPTLAETMRYPAYEQWRLLTIGKYIEHTDFFSIYQWLAGAYIRVSLALFLITEIFKRKSNKMKLGILLANGFLMVIISIVPFSNFKFLHFSKTYYYPGTFYFLLFLSAFLFFGTFIHTKEAKKHENETIQK
>NZ_CP017080.1|WP_064466130.1|3677216_3677732_-|bacillithiol-transferase-BstA
MDLKYPVGQFHFDGEIASMADDWIKEIGTLPSLLKEAVASMDDEQLDTAYRPGGWTVRQVVHHVADSHMNAYIRFKLALTEENPVIKPYEQGRWAELPDYGMPVDISLTLIEAVHGRLHTLLSGLSADDLNRTFLHPDSGEVKVGENIGMYAWHGRHHLAHITSLSKRRGW
>NZ_CP017080.1|WP_064466129.1|3676402_3676885_-|SRPBCC-family-protein
MQAAIEKEGIGIIARFERRFNHSVEKVWGALTENDKLEKWMSNLEMKDLRKGGNIQFNFNDESGKSFDMKIRDFRERAVLGYEWGDGWVRFELYPDKDGCSLVLTESIPELNQHTSKDLAGWHVCLDMLRAVLAGRAMDFPMDVWERWHEEYIRAVKRMG
>NZ_CP017080.1|WP_064466128.1|3673839_3675921_-|methyl-accepting-chemotaxis-protein
MGSSPADKKEKVKRRISIRVKWLLFICVSVFLAIIVAVSIMGVKVTSIFKEDSISLNKSSAQNAAAQINLSMATYENSLEQLSQLISNQVSSGDSIKDVIKTIEAFQKNNEDLISVYYMDGKDGSLNASPKMEFNQDARETKTYTQLTERPETKWMDVYKDTTSGTIMTSVVTPVLVNGKMAGALGYDIDLSTIGKMRSNIEKDSTSSLVILDSQGFIVSSFMKDMDGKNMNPEKSGLEEGVKDFITDTDSFDSEFKWVADLYNGETVANQSLTLGDEDYTGEVSAVAGVNWKVLALTPDEILQSKLADIKGIVLISILIGLLFGTICALYLAGKLTKIMADFKKVIEKTANGDLVTEFAINSNDEIGDLSKSYNSMLGKLRKLVANVNSNAESVTNANAGLSQIAAENSSAITDVSRAIDEIASGASNQSEQVEHGASTIGVLSDEIDGLSKQSRETQSVLELASEKIESGKQQVSGLETSYQKLELAFTAVTDMSLRLVEKSKTISDVTNAISKISEQTNLLSLNASIEAARAGESGKGFAVVANEVRSLADDSKEATKNIQVIIQSILSDTEELLRTTNETNQISKNQKNAVITVSEAMRELEDSIGRISTSIQEETRSIESINQQKETVVQMIEEITAVSQQTTASSEEIASSMEEQAASSNELAQYTRQLTQLINDLETTLGEFQINK
>NZ_CP017080.1|WP_064466127.1|3672258_3673614_-|arsenic-transporter
MHFEIGMAIFVFVMTMIVILWRPGGINEAWPASIGAAVILLSGTVSHGDILDILSKIGGASITIMATIVMAVILESFGFFHWAAARLAILARGSGHRLYWYIQLLCFLMTLLFNNDGSILITTPILILLLKNLRLKPHQAVPYLLSGALIATASSAPIGVSNIVNLIALQIVHMTLYMHTAMMFVPATMGLLFMSCLMFLVVRKKLPKKLPELSYDIEESFFTRNFHPLKGKMTVETKRQRTIFMLKVLLYVFVIRCLLFVASYLSIPIEWVAVLGSLSLLVWRWYHLRTHPVDILKKTPWHILIFAFSMYVIIYGLHNVGLTTLLIKLCEPIVNQGLLSASFVMGGLVSLLSNIFNNHPALMIGTITLTEMGLDPITLKTIYLANIIGSDMGSLLLPIGTLASLIWMHILKRNKVKITWKDYLSVSLIVIPLTTVATLLLLYFWVQMIFS
>NZ_CP017080.1|WP_064466126.1|3671568_3672234_-|hypothetical-protein
MSDAGALLGKQIDVQLSGKKTFKGILTDLGMDILVLFNGERFLYFPMLQVHRLNLSKEIDSEIAYPSDPPMMEDMGSISYRKTLMNAKGVYSEIHVAGHIPLHGYITNVFNDYFAFYSPVYKTMYISLHHLKWLSPYAQHAIPYSLSKECFPVNPSAVPMVRSLEEQLKKNAGKLVVLDGGGDPMKIGLLKTAVNNLVELTTASGEQVFLKLAHIKSVYMP
>NZ_CP017080.1|WP_064466125.1|3670088_3671291_-|C40-family-peptidase
MLKQTVSSGVLIGVMLVGFIFFPGLMAEAADRVHTVASSETVDSVARDYHISAEQLMATNGLPDNKLYAGQKLTIIRTAYTPAAYQWSERGKRIANYAKTFLGFKKVAGEETPVKGFDSSGLIHWVLSAQKVPIDRLTVDGFYKQGMDTSTPKAGDLIFFLEKESLKVVTAGIYLGKNQFVQSGYGAETVQVRSSTENYFAKYKLAYKTYTPKGEHIVQSGETLKGISDNYGVSVNTINNRNALPAGELIKGQYLQIYSNPLFPFYVNREAAYDKAEKVIKYAYTLRGFTYAFGEDDPRIGMDCSGFIYWVMKEQGLSVKRGSAEEYFSLLPKIDNPKTGDLVFFRDTGARLGVTHVGIYLGAGRFLHTTENAGVHISNLSSGYFAVKFESFGQAENLIY
>NZ_CP017080.1|WP_064465744.1|3683598_3684039_+|GNAT-family-N-acetyltransferase
MHIQRATLDQLESLTGLFDSYRVFYEQLPDLDSARIFLRERLVNGESVVFIAFEEEDAVGFVQLYPSFSSVSMRHSWILNDLFVKKSARQKGYGEELLKKAITFARESGAKGITLETGKDNVKAQSLYEKIGFARETNYFYHFSII
>NZ_CP017080.1|WP_064465743.1|3684090_3684375_-|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MKSTGIVRKVDELGRVVIPIELRRTLGIKEKDALEIYVEQDRIILQKYKPNMTCQVTGETSDDNMKLADGKLILSAEGAELLIKEIQASLEFAK
>NZ_CP017080.1|WP_064465742.1|3684847_3685819_+|multidrug-resistance-efflux-transporter-family-protein
MRPIILGICSAFFFAFTFVLNQAMELSGGSWIWSASLRYIFMVPFLLCIVLSRKNLLPLLRVMRERPGPWLLWSFVGFGLFYAPLCFASAYSPGWLIAGTWQITIISGALLAPLFFENVQTKEGLERQRGKISVRGLLMSMIILLGIILMQLEHTKHISMANLWLGVIPIIIASFAYPLGNRKMMEVSEGRLDAYQRVLGMTLASMPFWFLLSIYGFMTVGAPTKMQSFQSLLVALFSGVIATVLFFKATDMVRGNMQKLASVEATQSMEVLFALAGELLFLSLPFPSLLSWFGIFIVIIGMILHSYVSHKNEGSSRKRTVSA
>NZ_CP017080.1|WP_167353431.1|3686079_3686415_+|multidrug-efflux-SMR-transporter
MNWIKVFIAAFFEVFWVIGLKHADGFWTWTGTVISIIISFYLMIMAGRKLPVGTVYAVFVGMGTAGTVLSEIIFFGESFRISKTLLIVLLLLGVIGLKVVTDDTVAKGDES
>NZ_CP017080.1|WP_064465766.1|3686414_3686729_+|multidrug-efflux-SMR-transporter
MAWVSLILAGLCEMFGVAMINKLHKDRNWQSLTLLFIGFGASFLFLAYAMQTLPMGTAYAIWTGIGASGGAIIGMLLYGESKDWRRIVFIAMVLCAAVGLKLVS
>NZ_CP017080.1|WP_064465740.1|3686944_3687205_+|hypothetical-protein
MSQNHDYYQDLLKRLCKAEHISTRKPRFENIDDFVVIHVKNHLKEGVDLECFKILDLIQRTIVPLGIKFNQQLYLYQKEIDWIEWR
>NZ_CP017080.1|WP_064465739.1|3687400_3690607_-|DEAD/DEAH-box-helicase
MNIKLNQKIIKDLCGTVSFKRGEAFQRTNKVTFESYRSDGCEAMVDGKETFHVSIAVDGAGGFKSTCTCPTLASFPRDCQHIAAVLLSVHDHQQHGTVPEGLNASANNRLSEGLLTLFNNQPVRKSGHQLHFENRQLLDAEFTLKPIRMGKRQYMLGMELKLDKVHVADIRNFLKRVQKGKAVLVSQSFLYDPELHCFQRETDAVLQQLIAVLADEKVYVDALMDKSEYNMDDHLLLLPPSSFARLIPILVIAPLVKLAHGGNTFHGLLISGERLPLRFDFNRGEVEGYRLDISGLNETIVMNAYKTVLFAGSLFQLESEDCQRLLELKQMLEDSGMNRIPIHHEQLDLFLDKVVPGLKRLGEVHIARSISERFLVTPLVAKLFLDRVNNRLLAGMEFHYEHNVINPLETQETGTASMLIRDVEKEKEILKLMGDGQFAKTDGGYFLHNEELEYEFLYHIVPKLQKLVQIYATTAIRNRISRGNAAPRIKVKIKKERTDWLEFKFEMDAIPDKQIREVLAALEEKRKYYRLRNGSLVSLETREFEEIQRFLKALPVQDQDLESSLNMPIVKGLQLLDSVNDSTTFTLEESFRNFLKNIKNPTELEFAVPKSLEPILRDYQKTGYKWMKILAEYGFGGILADDMGLGKTLQSIAFIVSELPEIRKKKLPALIVCPSSLTYNWQAEFAKFAPDIKAVIVDGHKQERTSLLQAAMDMDVVITSYPLLRKDILWFEKRDFHTVFFDEAQAFKNPGTQTARSAKKIKALHRFALTGTPIENSMEELWSLFHVVFPELFMGLKEYSNLSRKKISRRIQPFMLRRMKEDVLGELPEKIESLESMELLPDQKKLYGAYLAKLKHDTLKHLDKDTFRKNRIRILAGLTRLRQICCHPALFVDGYEGSSAKYEQLMQIIEESKLSGRRVLIFSQFTKMLHMIGRDLAKQGQDYFYLDGQTPSKERVDVCQRFNSGERDLFLISLKAGGTGLNLTGADTVILYDLWWNPAVEEQAADRAHRMGQENVVQVIKLVARGTIEEKMNELQEKKRHMIEEIIDPGEMSSSALTEEDIKEILMI
>NZ_CP017080.1|WP_064465738.1|3690773_3691007_-|hypothetical-protein
MKFFGITVLLLVPLVLFSLGMDILLGFDLDNSVKRAFNPFLVKDRAELILFVILLIILLFSFIYRKKEKDNKSKGQQ
>NZ_CP017080.1|WP_064465737.1|3691003_3692149_-|GerAB/ArcD/ProY-family-transporter
MEKAKISGYQLFVLIFLFEMGSALLVPLAGEAKQGAWLVILMATIGGILLFFVYYALFRYYPDQLLTEFVRSILGNFLGRIVAFLYILYFMYLAARVLRDFGETLLTFAYPHVPIFFANAAFIIVVIYTVRKGVEVLARTGELFFVLENLLFMTFILLIIVSGMIHMNNLKPVFEIGVLEMGKMAFTKTIFFPFGELIVFLMIFPYLNEPQRLKKIGVAGLAASGIFLSFTMAMNIAVLGVDLTLRSQYPLLTLIQSIEVAGFLERLDVYFLLKLMIGGFIKITVFTYVAVIGTANVFNVKQASRLAYPVGIVILLVSVVIASSYSEHIHEGLGAVPMYIHLPFQIIIPLLLLMIAFFKNRKKTNKHQRQNTELKGGVEER
>NZ_CP017080.1|WP_064465765.1|3692170_3693394_-|Ger(x)C-family-spore-germination-protein
MNRKRLVLLLMLMGTAFTSGCWDKTELNEMSIVSAVGIDKNNDGKLVGTFQIINPVNVAGSLQGGGGTNPPISIYRATGDNVLELDSNASTKISRDMYFAHANLIVIGEEVAKEMGINSILDAFERSPEFRATTRIVIARGVKAKDIVETLTAIDKVSAEKVIKTIESTEKQQGGSINVNLQEVIKNLVSSGKEPLISGFTVRGNTGKENKMENTQSSSIAANPNAVGIGVFKDGKLVDWLDGNQAIGTMWVMDRIVNTNVNINWGGKKGAVTYQVLRQKTNIKPRMKNGKPKMYITVRAEGDIREVNVPLDLASPHELIDIEKMLAKDLKKEMENAIAIAQKNKSDIFGFGEIIHESHPKYWKKHEEDWDDATFPKLEAEIQVETFIRRTGLRNKPYLSDIKKGDQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017080_1	1.2\|684778\|35\|NZ_CP017080\|CRISPRCasFinder	684778-684812	35	KY421186	Flavobacterium phage FL-1, complete genome	12540-12574	10	0.714
NZ_CP017080_1	1.4\|684898\|35\|NZ_CP017080\|CRISPRCasFinder	684898-684932	35	MT110073	Stenotrophomonas phage vB_SmaS_DLP_3, complete genome	62443-62477	11	0.686

1. spacer 1.2|684778|35|NZ_CP017080|CRISPRCasFinder matches to KY421186 (Flavobacterium phage FL-1, complete genome) position: , mismatch: 10, identity: 0.714

tgcgccgaacgctataacaggaaccgaaattgctt	CRISPR spacer
agggattaacactatcacaggaaccgaaattgaca	Protospacer
 * * . ***.**** **************** .

2. spacer 1.4|684898|35|NZ_CP017080|CRISPRCasFinder matches to MT110073 (Stenotrophomonas phage vB_SmaS_DLP_3, complete genome) position: , mismatch: 11, identity: 0.686

cgggaccggtgcagtcggaagtacagcgttggctt	CRISPR spacer
tcggacaggtgcagtcggaagttcagcactcctac	Protospacer
. **** *************** ****..*  . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

395690 : 403984

Synechococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064462248.1\|395690_396983_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	9.4e-17	22.8
WP_064462249.1\|397085_397805_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3HI61	Synechococcus_phage	2.3e-49	45.7
WP_064462250.1\|397797_398052_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_064462251.1\|398048_398735_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_064462252.1\|398718_400941_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	9.4e-166	43.1
WP_064462253.1\|400925_402341_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.5e-55	33.8
WP_064462254.1\|402383_403409_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	1.7e-66	44.2
WP_064462255.1\|403408_403984_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.4e-27	39.3

DBSCAN-SWA_2

651050 : 683573

Listeria_phage(33.33%)

capsid,terminase,tail,protease,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064463997.1\|651050_652475_-	recombinase family protein	A0A2H4J3Q1	uncultured_Caudovirales_phage	1.6e-187	69.1
WP_064463995.1\|652500_652956_-	hypothetical protein	A0A0K2CZC9	Paenibacillus_phage	4.9e-29	45.0
WP_064463993.1\|652986_653343_-	helix-turn-helix transcriptional regulator	A0A0S2SXM8	Bacillus_phage	3.1e-15	44.4
WP_064463991.1\|653523_653748_+	helix-turn-helix transcriptional regulator	A0A0S2SXX9	Bacillus_phage	4.9e-14	53.7
WP_156775671.1\|653995_654139_+	hypothetical protein	NA	NA	NA	NA
WP_064463989.1\|654206_654428_+	hypothetical protein	NA	NA	NA	NA
WP_064463987.1\|654428_655946_+	AAA family ATPase	A0A2H4J9G9	uncultured_Caudovirales_phage	1.7e-142	54.6
WP_167353376.1\|655942_656101_+	hypothetical protein	NA	NA	NA	NA
WP_064463985.1\|656093_656315_+	hypothetical protein	NA	NA	NA	NA
WP_064463983.1\|656332_657238_+	recombinase RecT	A0A2H4JA23	uncultured_Caudovirales_phage	1.5e-117	73.7
WP_156775672.1\|657250_657406_+	hypothetical protein	NA	NA	NA	NA
WP_064463981.1\|657402_658140_+	MBL fold metallo-hydrolase	A0A2H4J3R0	uncultured_Caudovirales_phage	1.5e-83	64.2
WP_083231921.1\|658172_658940_+	replication protein	A0A0C5AN01	Paenibacillus_phage	1.4e-36	43.8
WP_064463979.1\|658920_660222_+	AAA family ATPase	A0A2H4J268	uncultured_Caudovirales_phage	5.0e-151	60.9
WP_064463977.1\|660333_660921_+	hypothetical protein	A0A2H4J564	uncultured_Caudovirales_phage	3.2e-57	58.2
WP_064463975.1\|661047_661269_+	hypothetical protein	NA	NA	NA	NA
WP_064463973.1\|661651_661930_+	hypothetical protein	A0A0H3V0M3	Geobacillus_virus	3.4e-17	53.8
WP_064463971.1\|662023_662557_+	hypothetical protein	A0A2H4J255	uncultured_Caudovirales_phage	1.6e-26	85.1
WP_064463969.1\|662658_663036_+	ArpU family transcriptional regulator	A0A2H4J748	uncultured_Caudovirales_phage	4.1e-37	66.4
WP_064463966.1\|663107_663932_+	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_064463964.1\|664440_664872_-	hypothetical protein	NA	NA	NA	NA
WP_064463962.1\|665450_665642_+	type II toxin-antitoxin system HicA family toxin	D6R431	Bacillus_phage	1.1e-19	77.6
WP_064463960.1\|665669_666083_+	type II toxin-antitoxin system HicB family antitoxin	A0A1L2JY34	Aeribacillus_phage	1.9e-48	65.4
WP_064463958.1\|666150_666480_+	HNH endonuclease	A0A0U4JWW4	Bacillus_phage	4.2e-30	62.7
WP_083231922.1\|666735_667077_+\|terminase	P27 family phage terminase small subunit	A0A0U4B062	Bacillus_phage	4.1e-12	42.4
WP_064463956.1\|667073_668726_+\|terminase	terminase large subunit	A8AT95	Listeria_phage	2.2e-175	53.5
WP_064464212.1\|668754_669894_+\|portal	phage portal protein	A8AT96	Listeria_phage	1.6e-113	52.9
WP_083232215.1\|669956_670616_+\|protease	Clp protease ClpP	A0A2H4JFZ0	uncultured_Caudovirales_phage	1.4e-40	51.7
WP_064463952.1\|670644_671793_+\|capsid	phage major capsid protein	Q4ZD74	Staphylococcus_phage	2.1e-108	54.8
WP_167353377.1\|671798_671963_+	hypothetical protein	A8AT99	Listeria_phage	1.9e-07	59.3
WP_064463950.1\|671972_672263_+	hypothetical protein	A0A059T7R0	Listeria_phage	4.4e-23	52.5
WP_064463948.1\|672246_672663_+	hypothetical protein	A8ATA1	Listeria_phage	2.5e-27	50.7
WP_064463946.1\|672659_673061_+	HK97 gp10 family phage protein	A0A059T5F3	Listeria_phage	1.0e-25	45.9
WP_064463944.1\|673057_673441_+	hypothetical protein	A8ATA3	Listeria_phage	1.8e-32	56.2
WP_064463942.1\|673441_674017_+	hypothetical protein	A0A060AKE9	Staphylococcus_phage	5.4e-41	49.2
WP_064463941.1\|674078_674405_+	hypothetical protein	NA	NA	NA	NA
WP_064463939.1\|674603_679541_+\|tail	phage tail tape measure protein	A0A059T5F4	Listeria_phage	1.6e-80	33.6
WP_064463937.1\|679537_681223_+\|tail	phage tail family protein	A0A059T682	Listeria_phage	1.5e-86	33.8
WP_064463935.1\|681236_683573_+\|tail	phage tail protein	A0A059T7Y6	Listeria_phage	1.3e-122	33.3

DBSCAN-SWA_3

1822868 : 1890995

113

Bacillus_phage(32.79%)

capsid,tRNA,terminase,head,tail,integrase,plate,transposase,holin,portal

attL 1845849:1845865|attR 1880129:1880145

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083232002.1\|1822868_1823852_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_034313436.1\|1823855_1824089_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_064465866.1\|1824482_1825439_+	stage V sporulation protein K	G3MAX6	Bacillus_virus	3.5e-53	45.8
WP_064465856.1\|1825481_1826090_-	trimeric intracellular cation channel family protein	NA	NA	NA	NA
WP_064465855.1\|1826257_1827511_+	GTPase HflX	NA	NA	NA	NA
WP_064465854.1\|1827527_1828796_+	methionine gamma-lyase family protein	NA	NA	NA	NA
WP_064465853.1\|1828979_1829384_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_064465852.1\|1829421_1830756_+	type I glutamate--ammonia ligase	NA	NA	NA	NA
WP_064465851.1\|1830860_1832012_-\|integrase	site-specific integrase	A0A0S2SXP1	Bacillus_phage	9.4e-69	70.6
WP_064465850.1\|1832213_1832429_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_064465849.1\|1832534_1832915_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_064465848.1\|1833151_1833346_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_064465847.1\|1833347_1833608_+	hypothetical protein	A0A1B1P7U4	Bacillus_phage	1.7e-31	68.6
WP_064465846.1\|1833637_1834009_+	hypothetical protein	U5PSN4	Bacillus_phage	4.3e-07	34.2
WP_064465845.1\|1834087_1834288_+	hypothetical protein	NA	NA	NA	NA
WP_064465844.1\|1834333_1834648_+	hypothetical protein	NA	NA	NA	NA
WP_064465843.1\|1834628_1834841_+	hypothetical protein	NA	NA	NA	NA
WP_064465842.1\|1834918_1835752_+	hypothetical protein	A0A2P1JTZ5	Anoxybacillus_phage	1.2e-81	57.1
WP_083232239.1\|1835783_1836524_+	PD-(D/E)XK nuclease-like domain-containing protein	A0A0A7RVR3	Clostridium_phage	4.7e-53	45.3
WP_064465841.1\|1836655_1836850_+	hypothetical protein	W6LMV1	Streptococcus_phage	1.6e-05	42.3
WP_156775712.1\|1836881_1837058_+	hypothetical protein	NA	NA	NA	NA
WP_064465840.1\|1837124_1837352_+	hypothetical protein	NA	NA	NA	NA
WP_064465839.1\|1837393_1837594_-	hypothetical protein	NA	NA	NA	NA
WP_064465838.1\|1837650_1837863_-	helix-turn-helix transcriptional regulator	S5MTW4	Brevibacillus_phage	3.5e-06	39.7
WP_064465837.1\|1838035_1838257_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_064465836.1\|1838261_1839314_+	phage antirepressor KilAC domain-containing protein	A0A2I7SCU0	Paenibacillus_phage	2.5e-20	51.0
WP_064465835.1\|1839440_1840256_+	phage replisome organizer N-terminal domain-containing protein	A0A0H3U476	Staphylococcus_phage	7.4e-44	48.9
WP_167353390.1\|1840161_1841034_+	ATP-binding protein	S6B1M2	Thermus_phage	1.3e-57	44.4
WP_083232005.1\|1841047_1841206_+	IDEAL domain-containing protein	NA	NA	NA	NA
WP_064465834.1\|1841214_1841685_+	hypothetical protein	NA	NA	NA	NA
WP_064465833.1\|1841822_1842092_+	hypothetical protein	A0A1B1P7W1	Bacillus_phage	2.2e-05	38.2
WP_064465832.1\|1842081_1842582_+	HNH endonuclease	A6M989	Geobacillus_virus	3.5e-36	59.8
WP_083232006.1\|1842728_1843202_+	HNH endonuclease	U5PX11	Bacillus_phage	2.1e-27	44.7
WP_064465831.1\|1843198_1843684_+	single-stranded DNA-binding protein	A0A059T5E0	Listeria_phage	2.4e-50	66.2
WP_064465830.1\|1843686_1844466_+	hypothetical protein	A0A0A8WEV5	Clostridium_phage	7.1e-28	41.5
WP_167353391.1\|1844558_1845086_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_064465828.1\|1845088_1845415_+	nucleoside triphosphate pyrophosphohydrolase family protein	A7KV26	Bacillus_phage	1.3e-28	59.5
WP_156775713.1\|1845411_1845558_+	BH0509 family protein	NA	NA	NA	NA
WP_064465827.1\|1845538_1845970_+	DUF1064 domain-containing protein	B5LPP8	Bacillus_virus	5.7e-27	48.6
1845849:1845865	attL	NA	NA	NA	NA
WP_083232007.1\|1845972_1846308_+	hypothetical protein	A0A0A7RWJ7	Clostridium_phage	6.8e-12	36.1
WP_156775714.1\|1846526_1846688_+	hypothetical protein	NA	NA	NA	NA
WP_156775715.1\|1846734_1846887_+	hypothetical protein	NA	NA	NA	NA
WP_064465825.1\|1846941_1847178_+	hypothetical protein	NA	NA	NA	NA
WP_064465824.1\|1847213_1847660_+	DUF1492 domain-containing protein	NA	NA	NA	NA
WP_156775716.1\|1847910_1848108_+	hypothetical protein	NA	NA	NA	NA
WP_064465822.1\|1848575_1849010_+\|terminase	terminase small subunit	H9A0M8	Staphylococcus_phage	7.5e-35	55.6
WP_083232008.1\|1848999_1850268_+\|terminase	PBSX family phage terminase large subunit	A0A1B1UZZ1	Enterococcus_phage	3.8e-172	69.4
WP_064465820.1\|1850279_1850474_+	hypothetical protein	NA	NA	NA	NA
WP_064465819.1\|1850492_1851890_+\|portal	phage portal protein	A0A0A7AQF2	Bacillus_phage	1.3e-83	41.9
WP_064465818.1\|1851810_1852743_+	hypothetical protein	A0A0S2MVF0	Bacillus_phage	8.3e-15	29.0
WP_064465817.1\|1852983_1853190_+	hypothetical protein	NA	NA	NA	NA
WP_064465816.1\|1853294_1853894_+	DUF4355 domain-containing protein	A0A2H4J4P4	uncultured_Caudovirales_phage	1.3e-32	41.3
WP_064465815.1\|1853910_1854225_+	hypothetical protein	S5M669	Brevibacillus_phage	2.7e-26	58.7
WP_064465814.1\|1854250_1855273_+\|capsid	major capsid protein	S5MA55	Brevibacillus_phage	1.8e-116	62.1
WP_156775717.1\|1855297_1855450_+	hypothetical protein	NA	NA	NA	NA
WP_064465813.1\|1855458_1855836_+\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
WP_064465812.1\|1855832_1856333_+	hypothetical protein	A0A2H4J4S5	uncultured_Caudovirales_phage	1.8e-48	55.8
WP_064465811.1\|1856319_1856694_+	hypothetical protein	A0A2D1GQE7	Lysinibacillus_phage	3.5e-09	33.9
WP_083232010.1\|1856686_1857145_+	hypothetical protein	A0A2D1GQ35	Lysinibacillus_phage	1.1e-25	41.1
WP_064465810.1\|1857148_1858132_+	DUF3383 family protein	A0A1L2JZ70	Aeribacillus_phage	5.9e-72	41.4
WP_064465809.1\|1858149_1858575_+	hypothetical protein	A0A2D1GQE4	Lysinibacillus_phage	4.1e-30	45.4
WP_156775928.1\|1858692_1858932_+	hypothetical protein	A0A1L2JY66	Aeribacillus_phage	2.9e-12	50.7
WP_156775718.1\|1858981_1859137_+	hypothetical protein	NA	NA	NA	NA
WP_064465808.1\|1859141_1861634_+	hypothetical protein	A0A2I7QIQ2	Bacillus_phage	8.4e-123	55.6
WP_064465807.1\|1861633_1862188_+	LysM peptidoglycan-binding domain-containing protein	A0A1L2JY61	Aeribacillus_phage	2.2e-39	49.0
WP_064465806.1\|1862196_1862544_+	hypothetical protein	A0A2H4J6L1	uncultured_Caudovirales_phage	5.0e-26	50.9
WP_064465805.1\|1862521_1863352_+	hypothetical protein	E5DV61	Deep-sea_thermophilic_phage	2.1e-78	56.6
WP_064465804.1\|1863364_1863715_+	hypothetical protein	A0A2D1GQ94	Lysinibacillus_phage	6.7e-10	35.4
WP_064465803.1\|1863711_1864068_+	hypothetical protein	NA	NA	NA	NA
WP_064465802.1\|1864067_1865252_+\|plate	baseplate J/gp47 family protein	A0A2D1GQ46	Lysinibacillus_phage	1.1e-80	42.2
WP_064465801.1\|1865248_1865890_+	hypothetical protein	A0A2H4J4S3	uncultured_Caudovirales_phage	9.6e-39	44.2
WP_064465800.1\|1865902_1866679_+	hypothetical protein	NA	NA	NA	NA
WP_064465799.1\|1866698_1867052_+	hypothetical protein	M4ZR44	Bacillus_phage	3.0e-10	44.7
WP_064465798.1\|1867227_1869588_+	SGNH/GDSL hydrolase family protein	A0A0S2SXG8	Bacillus_phage	2.3e-13	39.2
WP_064465797.1\|1869700_1869937_+	hypothetical protein	NA	NA	NA	NA
WP_156775719.1\|1870060_1870468_+	hypothetical protein	NA	NA	NA	NA
WP_064465795.1\|1870436_1870931_+	hypothetical protein	NA	NA	NA	NA
WP_064465794.1\|1870945_1871212_+\|holin	phage holin	A0A0B5A2E7	Streptococcus_phage	5.2e-23	60.7
WP_064465793.1\|1871267_1872245_+	M15 family metallopeptidase	A0A2H4J4U2	uncultured_Caudovirales_phage	2.7e-48	59.4
WP_156775720.1\|1872444_1872612_-	hypothetical protein	NA	NA	NA	NA
WP_064465792.1\|1872623_1873193_-	hypothetical protein	NA	NA	NA	NA
WP_167353392.1\|1873214_1873391_-	hypothetical protein	NA	NA	NA	NA
WP_064465790.1\|1873462_1874101_-	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	1.4e-29	49.6
WP_064465789.1\|1874162_1874357_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_064465788.1\|1874501_1874684_+	hypothetical protein	NA	NA	NA	NA
WP_156775721.1\|1874862_1875102_+	hypothetical protein	NA	NA	NA	NA
WP_064465786.1\|1875094_1876288_+	hypothetical protein	A0A288WFS1	Bacillus_phage	1.0e-78	39.6
WP_156775722.1\|1876433_1876844_+	hypothetical protein	A0A0S2SXR2	Bacillus_phage	1.6e-10	31.6
WP_167353393.1\|1877157_1877487_-\|integrase	tyrosine-type recombinase/integrase	A0A0S2SXP1	Bacillus_phage	8.7e-20	52.6
WP_083232013.1\|1877552_1878200_-\|integrase	tyrosine-type recombinase/integrase	A0A0S2SXS9	Bacillus_phage	7.2e-18	48.9
WP_156775723.1\|1878242_1878755_+	DnaD domain protein	A0A2H4J6G9	uncultured_Caudovirales_phage	7.2e-13	42.4
WP_064465783.1\|1878780_1879509_+	ATP-binding protein	A0A1B0T6C3	Bacillus_phage	1.4e-73	57.6
WP_064465782.1\|1879505_1879742_+	hypothetical protein	Q0H275	Geobacillus_phage	1.4e-11	51.7
WP_156775724.1\|1879744_1879888_+	hypothetical protein	NA	NA	NA	NA
WP_156775725.1\|1879887_1880229_+	DUF1064 domain-containing protein	A0A2P1JTY5	Anoxybacillus_phage	4.9e-42	75.7
1880129:1880145	attR	NA	NA	NA	NA
WP_156775726.1\|1880824_1880989_+	hypothetical protein	NA	NA	NA	NA
WP_064465781.1\|1881068_1881305_+	XtrA/YqaO family protein	A0A1L2JY31	Aeribacillus_phage	2.5e-16	63.1
WP_064465780.1\|1881285_1882065_+	hypothetical protein	NA	NA	NA	NA
WP_167353394.1\|1882118_1882259_+	hypothetical protein	NA	NA	NA	NA
WP_064465779.1\|1882274_1882769_+	sigma-70 family RNA polymerase sigma factor	S5MAA9	Brevibacillus_phage	4.0e-24	39.3
WP_064465778.1\|1882904_1883129_+	hypothetical protein	NA	NA	NA	NA
WP_064465777.1\|1883196_1883439_-	hypothetical protein	NA	NA	NA	NA
WP_083232240.1\|1883638_1883830_+	hypothetical protein	NA	NA	NA	NA
WP_064465775.1\|1884252_1884819_+	hypothetical protein	NA	NA	NA	NA
WP_064465774.1\|1885223_1885445_+	hypothetical protein	NA	NA	NA	NA
WP_156775727.1\|1885543_1886877_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	2.6e-30	36.1
WP_064466351.1\|1887335_1887623_+	hypothetical protein	NA	NA	NA	NA
WP_064466350.1\|1887731_1887962_+	hypothetical protein	A0A1Z1LZP5	Bacillus_phage	1.8e-16	58.6
WP_064466349.1\|1888056_1888962_+	hypothetical protein	A0A1L2JY39	Aeribacillus_phage	9.3e-80	50.8
WP_064466348.1\|1888963_1889467_+	hypothetical protein	A0A1L2JY43	Aeribacillus_phage	1.3e-25	52.0
WP_064466347.1\|1889703_1890069_+	hypothetical protein	A0A2H4J758	uncultured_Caudovirales_phage	2.1e-22	47.9
WP_069191707.1\|1890065_1890482_+	HNH endonuclease	A0A1C8E9C7	Bacillus_phage	1.0e-36	54.5
WP_064466346.1\|1890554_1890995_+\|terminase	P27 family phage terminase small subunit	A0A1B1P7N7	Bacillus_phage	4.1e-57	77.2

DBSCAN-SWA_4

1896206 : 1902752

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064466344.1\|1896206_1896641_+	hypothetical protein	Q5YA56	Bacillus_phage	1.8e-20	40.7
WP_064466343.1\|1896634_1896856_+	hypothetical protein	Q5YA55	Bacillus_phage	9.1e-05	35.8
WP_167353372.1\|1896868_1897183_+	hypothetical protein	D2XR31	Bacillus_phage	1.9e-11	41.4
WP_083232242.1\|1897112_1897421_+	hypothetical protein	Q4ZD59	Staphylococcus_phage	4.6e-15	48.8
WP_064466342.1\|1897477_1898452_+	D-alanyl-D-alanine carboxypeptidase family protein	A0A2H4J4U2	uncultured_Caudovirales_phage	1.8e-49	65.4
WP_064466341.1\|1898750_1899464_+	hypothetical protein	NA	NA	NA	NA
WP_064466340.1\|1899478_1899721_+	hypothetical protein	NA	NA	NA	NA
WP_064466339.1\|1899972_1900191_-	DUF3006 domain-containing protein	Q0H256	Geobacillus_phage	2.3e-13	60.0
WP_064466338.1\|1900191_1901031_-	MBL fold metallo-hydrolase	Q0H255	Geobacillus_phage	3.9e-80	58.2
WP_064466337.1\|1901307_1901766_+	hypothetical protein	NA	NA	NA	NA
WP_064466336.1\|1901828_1902752_+	hypothetical protein	Q9ZXD5	Bacillus_phage	4.3e-24	25.9

DBSCAN-SWA_5

4257688 : 4269205

Staphylococcus_phage(71.43%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064462662.1\|4257688_4260103_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	73.0
WP_064462661.1\|4260540_4260804_-	DUF2524 family protein	NA	NA	NA	NA
WP_167353417.1\|4260898_4261405_-	SMI1/KNR4 family protein	O64022	Bacillus_phage	3.4e-15	34.4
WP_064462659.1\|4261575_4262544_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	1.5e-59	78.1
WP_064462658.1\|4262533_4263106_+	class I SAM-dependent methyltransferase	A0A2H4PQV0	Staphylococcus_phage	2.4e-49	52.9
WP_064462657.1\|4263144_4263957_+	hypothetical protein	NA	NA	NA	NA
WP_064462656.1\|4264027_4264831_-	alpha/beta hydrolase	A0A220T682	Eptesipox_virus	4.2e-07	21.5
WP_064462793.1\|4265040_4265559_+	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_064462655.1\|4265720_4266914_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	5.4e-160	73.9
WP_064462654.1\|4267618_4269205_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	1.5e-194	63.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017080

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection