CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015428	[Haemophilus] ducreyi strain VAN5, complete genome	1 crisprs	DEDDh,cas3	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015428_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015428_1

256795-256943

Orphan

Consensus_repeat	Method
ACATTCTTAGTCACGTTTAAGGT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP015428_1

>merge|NZ_CP015428|1|256795-256943|CRISPRCasFinder
ACATTCTTAGTCACGTTTAAGGTTAAATTATTGGCTGCAAGCTCTGAATCATTATTTAACGTAACATTATTAGTCACGTTTAAGGTCATGTTGCCCGCTGTAAATTTGGATTTGTTCTTTAAGGTGATATTGTTAGAAGTGTTTAATGT

>NZ_CP015428|1|1|256795-256943|CRISPRCasFinder
ACATTCTTAGTCACGTTTAAGGT	TAAATTATTGGCTGCAAGCTCTGAATCATTATTTAACGTA
ACATTATTAGTCACGTTTAAGGT	CATGTTGCCCGCTGTAAATTTGGATTTGTTCTTTAAGGTG
ATATTGTTAGAAGTGTTTAATGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015428.1\|WP_010945353.1\|270772_271174_-\|regulatory-protein-GemA	unknown	unknown	gnl\|CDD\|377635
NZ_CP015428.1\|WP_010945344.1\|242903_244475_+\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP015428.1\|WP_010945348.1\|263143_266254_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|169983
NZ_CP015428.1\|WP_010945341.1\|240394_241021_-\|23S-rRNA-(uridine(2552)-2'-O)-methyltransferase-RlmE	unknown	unknown	gnl\|CDD\|183025
NZ_CP015428.1\|WP_010945346.1\|259072_260734_-\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092
NZ_CP015428.1\|WP_041603529.1\|266267_267509_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP015428.1\|WP_010945336.1\|232809_233205_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NZ_CP015428.1\|WP_010945339.1\|237019_238237_-\|tyrosine-transporter	unknown	unknown	gnl\|CDD\|273293
NZ_CP015428.1\|WP_010945337.1\|233221_233644_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NZ_CP015428.1\|WP_041603527.1\|261655_263020_-\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	unknown	unknown	gnl\|CDD\|181867
NZ_CP015428.1\|WP_010945350.1\|268148_268370_+\|DUF1414-domain-containing-protein	unknown	unknown	gnl\|CDD\|237471
NZ_CP015428.1\|WP_010945343.1\|241290_242754_+\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
NZ_CP015428.1\|WP_010945334.1\|230431_231355_-\|cation-diffusion-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|181919
NZ_CP015428.1\|WP_010945352.1\|270304_270655_-\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|337191
NZ_CP015428.1\|WP_155727101.1\|258570_258708_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015428.1\|WP_010945335.1\|231382_231922_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015428.1\|WP_010945338.1\|233951_234338_+\|YhcB-family-protein	unknown	unknown	gnl\|CDD\|377646
NZ_CP015428.1\|WP_064083224.1\|238433_240353_-\|ATP-dependent-zinc-metalloprotease-FtsH	unknown	unknown	gnl\|CDD\|182683
NZ_CP015428.1\|WP_010945351.1\|268372_270103_+\|DUF3413-domain-containing-protein	unknown	unknown	gnl\|CDD\|225625
NZ_CP015428.1\|WP_010945354.1\|271163_271538_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP015428.1\|WP_010945353.1\|270772_271174_-\|regulatory-protein-GemA	gnl\|CDD\|377635	pfam06252, DUF1018, Protein of unknown function (DUF1018). This family consists of several bacterial and phage proteins of unknown function.	1.19464e-33
NZ_CP015428.1\|WP_010945344.1\|242903_244475_+\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP015428.1\|WP_010945348.1\|263143_266254_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|169983	PRK09579, PRK09579, multidrug efflux RND transporter permease subunit.	0
NZ_CP015428.1\|WP_010945341.1\|240394_241021_-\|23S-rRNA-(uridine(2552)-2'-O)-methyltransferase-RlmE	gnl\|CDD\|183025	PRK11188, rrmJ, 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE.	2.48188e-156
NZ_CP015428.1\|WP_010945346.1\|259072_260734_-\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP015428.1\|WP_041603529.1\|266267_267509_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.55184e-56
NZ_CP015428.1\|WP_010945336.1\|232809_233205_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	6.00922e-82
NZ_CP015428.1\|WP_010945339.1\|237019_238237_-\|tyrosine-transporter	gnl\|CDD\|273293	TIGR00837, Tyrosine-specific_transport_protein, aromatic amino acid transport protein. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- tyrosine/tryptophan subfamily (TC 2.A.42.1) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli. [Transport and binding proteins, Amino acids, peptides and amines].	1.47319e-125
NZ_CP015428.1\|WP_010945337.1\|233221_233644_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	6.59279e-99
NZ_CP015428.1\|WP_010945350.1\|268148_268370_+\|DUF1414-domain-containing-protein	gnl\|CDD\|237471	PRK13689, PRK13689, hypothetical protein; Provisional.	1.30255e-29
NZ_CP015428.1\|WP_010945343.1\|241290_242754_+\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
NZ_CP015428.1\|WP_010945334.1\|230431_231355_-\|cation-diffusion-facilitator-family-transporter	gnl\|CDD\|181919	PRK09509, fieF, CDF family cation-efflux pump FieF.	2.33908e-140
NZ_CP015428.1\|WP_010945352.1\|270304_270655_-\|DNA-binding-protein	gnl\|CDD\|337191	pfam08765, Mor, Mor transcription activator family. Mor (Middle operon regulator) is a sequence specific DNA binding protein. It mediates transcription activation through its interactions with the C-terminal domains of the alpha and sigma subunits of bacterial RNA polymerase. The N terminal region of Mor is the dimerization region, and the C terminal contains a helix-turn-helix motif which binds DNA.	9.1108e-50
NZ_CP015428.1\|WP_041603527.1\|261655_263020_-\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	gnl\|CDD\|181867	PRK09451, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU.	0
NZ_CP015428.1\|WP_010945338.1\|233951_234338_+\|YhcB-family-protein	gnl\|CDD\|377646	pfam06295, DUF1043, Protein of unknown function (DUF1043). This family consists of several hypothetical bacterial proteins of unknown function.	3.50685e-43
NZ_CP015428.1\|WP_064083224.1\|238433_240353_-\|ATP-dependent-zinc-metalloprotease-FtsH	gnl\|CDD\|182683	PRK10733, hflB, ATP-dependent zinc metalloprotease FtsH.	0
NZ_CP015428.1\|WP_010945351.1\|268372_270103_+\|DUF3413-domain-containing-protein	gnl\|CDD\|225625	COG3083, COG3083, Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only].	0

>NZ_CP015428.1|WP_010945344.1|242903_244475_+|glutamine-hydrolyzing-GMP-synthase
MNNIHNHKILILDFGSQYTQLIARRIREIGVYCELWAWDVTEKQIREFNPTGIILSGGPESTTETNSPHAPEYVFKAGVPVLGICYGMQTMAMQLGGLTEASEQREFGYAAVELQHADQLFAKLNDDLTASQPKLDVWMSHGDKVTRLPAGFQTTAVTPTCPIAAMSDEKRRFYGVQFHPEVTHTKSGLALLTNFVENICGCARSWTPENIIEDAVAKIKQKVGNDQVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFGDKFGLNIIRVNAEERFLEALKGIDEPEAKRKIIGKVFIDIFDDEAKKLTDVKWLAQGTIYPDVIESAASKTGKAHVIKSHHNVGGLPDYMKLGLVEPLRELFKDEVRKIGLTLGLPAEMLNRHPFPGPGLGVRVLGEIKKEYCDLLRNADAIFIEELYKSGWYYKVSQAFTVFLPVKSVGVMGDGRKYDWVVSLRAVETIDFMTAHWAHLPYELLGKISNRIINEVNGISRVVYDVSGKPPATIEWE
>NZ_CP015428.1|WP_010945343.1|241290_242754_+|IMP-dehydrogenase
MLRIKQEALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPMLSAAMDTVTETKLAISLAQEGGIGFIHKNMSIERQADRVRKVKKFESGIVSEPVTVSPELTLAELAQLVKKNGFAGYPVVDNENNLVGIITGRDTRFVQDLTQTVSKVMTHRDRLVTVKENAKREEILALMHEHRVEKVLMVDDAFKLKGMITVKDFQKAEQKPNACKDEFGRLRVGAAVGAGPGNEERIDALVKAGIDVLLIDSSHGHSEGVLQRVRETRAKYPDLPIVAGNVATAEGAIALADAGASAVKVGIGPGSICTTRIVTGVGVPQITAIAEAAEALKDRDIPIIADGGIRYFGDISKAIAAGASCVMVGSMFAGTEEAPGEIELYQGRVFKSYRGMGSLGAMSKGSSDRYFQSDNAADKLVPEGIEGRIPYKGYLKEIIHQQMGDLRSCMGLTGSATIEDLRTKAQFVRISGAGIKESHVHDVTITKEAPNYHMG
>NZ_CP015428.1|WP_010945341.1|240394_241021_-|23S-rRNA-(uridine(2552)-2'-O)-methyltransferase-RlmE
MGKKRSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQSDRLFRPGMTVVDLGAAPGGWSQYAVTQIGNQGRIIACDILDMNPIVGVDFLQGDFREVSVLNALLARVGDEMVDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLAPKGSFVVKVFQGEGFDDYLRDIRSMFTTVKVRKPEASRDRSREVYIVATGYKG
>NZ_CP015428.1|WP_064083224.1|238433_240353_-|ATP-dependent-zinc-metalloprotease-FtsH
MVKNIVLWVVVAIVLMTAFEGFNSNFNNSNTVSYSTFLNDIKSNQLKEVNFKRNDETISVIKNDGTEYKTVMPMNDQYLLSDLAKTNATITGQPQERRGVLFQIFISWFPMVMLIGFWLFYMRQMQGGGRGAMGFGKSKAKMLTPEQVKTRFSDVAGCDEAKEEVSEVVDFLTEPSKFQKLGGRIPKGILMVGPPGTGKTLLAKAIAGEAGVPFFTMAGSDFVEMFVGVGASRVRDLFDQAKKNAPCIIFIDEIDAVGRKRGGAGLSGGHDEREQTLNQMLVEMDGFEGSEGVIIIAATNRADVLDDALTRPGRFDRQVTVDLPNVKGREQILKVHMKKVPLASSVDPMIVARGTPGYSGAQLANLVNEAALFAARKNRTVVTMDDFDKARDKINMGPERRSNTMTEKELMNTAYHEAGHVIVGYLMPEHDPLNKVTIVPRGQALGFAQFLPEGDRVSETFTKLESQLSTLFAGRIAEGLIFGDDKITTGASSDIHRATQIARAMVTQWGFSKELGPLFYQNEDGMGAIKGVSEASQKLIDQEMRIIIDRNYARAKQTLEENIDILHAMKDALLKYETLDRKQIDDLMHRRPVGEPEGWNDDKEENSSNDSSDATSASNTIEEAKPNTDADVADNRVDA
>NZ_CP015428.1|WP_010945339.1|237019_238237_-|tyrosine-transporter
MKNKILGSALMIAGTTIGAGMLAMPLTSAGMGFGATLFLLISLWGLLAYTGLLFMEVYQTAPKRDVGVASLAEQYFGIVGRVLATATLLVLLYALLAAYITGGGSLLSGILPEIMDSQLTNKIAILLFTTLLGTFVVVGIKGVDGLTRVLFMGKIIAFLLVLAMMLPKAKIENLFAMPLDNLLVISVVPIFFTSFGFHVIMASINNYLEADIGKIRIAIYIGTAIPLIAYLLWQLATHGVLTQAEFVEILKSDPSLNGLVKATSQITGSTFLGEMLRLFSALALITSFLGVAMGIFECIGDLLKRINLPTNRLVLTLVTFIPPLLFALFYPNGFIAALGYAGLLFAFYGMLLPIGLAWRARKLHPNLPYRVSGGNSALLIALLMGIIIMIIPFLIQFGYLPQVMG
>NZ_CP015428.1|WP_010945338.1|233951_234338_+|YhcB-family-protein
MEQWTTEIWFSISIAFLIGTLCGVLVMRFFKGNIQQQIQLKSELASAEAKIEEQKQQLERHFEQSANLLENLAEDYKKLYTHFAQNSEQLLPESNQVEFFKRLKNHANGDEDNQPRDYSDGSSGLLKS
>NZ_CP015428.1|WP_010945337.1|233221_233644_-|50S-ribosomal-protein-L13
MKTFVAETVKRDWYVVDAAGKTLGRLATELASRLRGKHKAEYTPHVDTGDYIIVINAEKVVVTGKKETDKIYYWHTGYVGGIKDATFKEMISRRPEAVIEIAVKGMLPKGPLGRDMFRKLKVYAGNTHNHAAQQPQVLDI
>NZ_CP015428.1|WP_010945336.1|232809_233205_-|30S-ribosomal-protein-S9
MTAANQNYGTGRRKSSSARVFIKPGSGNITINQRSLEVYFGRETSRMVVRQPLELVELLDKLDLYITVKGGGISGQAGAIRHGITRALMEYDETLRPALRAAGFVTRDARRVERKKVGLHKARRRPQYSKR
>NZ_CP015428.1|WP_010945335.1|231382_231922_-|hypothetical-protein
MRLLLIIFCCFLTACQMLKKTFVVPESIPFQGKSYFKVTDNMLEGMRHLLFLPAEGNQHPDNWHNAIFIFLDQNKTSTMMQRMALRKKVFSNQQDTIAQIKIIENELYSAIIYPPTERFNDILLEVSRGRDSACGFAQIQVANKRAILTEKNANLTAYQAELNSLAQQLSTLAWQVACQ
>NZ_CP015428.1|WP_010945334.1|230431_231355_-|cation-diffusion-facilitator-family-transporter
MEQQYAKLVKRAANVAIIVACSLILIKTFAWWKTGSISILASMTDSMVDLFASMTNILVLRFALQPADKTHTFGHGKAESLAAIAQSAFITGTAVFLLLQGIHNLNNPVLIEDSQLGVIVSIISIVFTAALVFYQKKVVSITQSPAIQADSLHYQTDLFMNAAILVAMLLNIYGFIYADAIFAIGIALYISINAFKMFWEAVQVLLDKALPEEDINQILTIVANQPQIIGIHDLLTRQAGAVRFIQLHLELEDHLSLLEAHTITDNLEQKILAAFPLSEVIIHQEPTSIVQQELVLGQVKNYVPSYR
>NZ_CP015428.1|WP_155727101.1|258570_258708_-|hypothetical-protein
MTKDLIKQARESVPLNQQLHHLKNKEAYENTDQQLSYQVNGSISF
>NZ_CP015428.1|WP_010945346.1|259072_260734_-|phospho-sugar-mutase
MTTIFTIAQHWLAQDPDLETQNELSHLIDNAKAGGKQALKELTARFGGRLQFGTAGLRGPLQAGPMGMNRVLVAQAAAGLALYLKTYDKQPSIVIGYDGRKNSDVFARDTAEIMAGVGIKAYLLPRKLPTPVLAYAIKHLDTTAGVMVTASHNPPEDNGYKVYLGKANGGGQIVSPADQQIAAFIDQVATGNIRELARSQDFNLLDDEVINAYIEKTARLSQENKMALNYVYTAMHGVGYEVLQKTLKQAGLSQPKLVSEQIEPDGNFPTVSFPNPEEKGALDLAIKLAQQENAEFIIANDPDADRLAVAIPDAQGIWKSLHGNVLGCLLGWHLAKKYHAQGQQGVLACSLVSSPALAEIAKKYGLKSEETLTGFKYIGKVDNLLFGFEEAIGYLVDPDKVRDKDGISAAVAFLDLVLYLKKQGKTILDYINEFNQQFGAYISGQISIRVSDLAEISKLMTALRNNPPTKIGGVKVTQLIDHTKTDRQSDILVFNLANGSRLITRPSGTEPKIKFYLDVKGNNGQQEAERALAHFDESVRQMLRQTQYGNQDC
>NZ_CP015428.1|WP_041603527.1|261655_263020_-|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU
MTPFSVVILAAGKGTRMYSDLPKVLHPIAGKSMVKHVIDTVKQMDAKQIHLVYGHGGDLLKTHLKTEPLNWVLQAEQLGTGHAMQQAATFFADDENILMLYGDTPLITAQTLTRLIAAKPANGIALLTVELADPTGYGRIIRQNGSVVAIVEQKDASPTQLTICEVNTGVMVASGASFKKWLSRLNNQNAQGEYYITDIIAMANQEGYSVQAVQANTLMEVEGANNHLQLAALERFYQQTQAEKLLLSGVSLMDPHRFDLRGSLQYGKDIQIDVNVILEGEVKLGNRVRIGAGCILKNCVVGDDVDIKPYSVFENAIIGNKAQVGPFARLRPGAKLEAESHVGNFVEIKNAHIGKGSKVNHLAYVGDAEVGENCNLGAGVITCNYDGANKFKTTIGNNVFVGSDVQLIAPVNIADGATIGAGATITKNIAENELVISRVPQRHIQGWQRPTKKK
>NZ_CP015428.1|WP_010945348.1|263143_266254_-|efflux-RND-transporter-permease-subunit
MFTDIFIKRPVLAISISIVFIILGLQAMFKLQVREYPEMTNTIITVTTNYAGADAETMQAFITSKLEESIAQADNIDYIKSDSAPSTSNITIKMKLNTNPGIAVADITSKVNAVRSQLPSNIDDPSIRSSTGAMEAIVFIRFSSKELSAPQLTDYIERVVKPQMFTVNGVSKINYFGGASFGLRIWLDPAKIAGLGLSANEVTAALAANNVQTAAGNSNGYYTEYRNKVETTTKSVEELASLVIKTLPNGSNIKLGDIAEISLEKARDDSRGIVNGREAVVLAVEAASTANALDVAKHIYPKFAEIQSNLPASVEAEVIYDKTIAINSSIKEVVKTILEAVIIVLVVIVLFLGSFRAMIIPIVTIPISLIGVLMVLQGFGFTINLLTLLGLILAIGLVVDDAIVVLENVERHIKQNGETPFRAAIIGTREIATPVIAMTITLMAVYSPMALMSGITGSLFKEFSLTLAGAVFISGVAALTLSPMMTSKILKQSEKPSWLEQRIEKTLHKVTDIYTKILLVVMASRYAILVFAGLIFASLPMLFNSLSSEVAPAEDRGIVMGMASGPANVNMDYMQDVMFPVAQQINQLPEVNATQIMPGFPSSNGSFMLVPLKDWSERTRSQKEVLAEVNKITNEVTEASVIGFEFPEISTGESGLPFSFVITTANDYRDLAQVASDFLLAAQSSGQFFFNQLDLKFDTASMAIKIDREKMGTYGVTAADIRSVLGSFLSGATLARVDIDGRAYDIISQVKRSERLSPQDLAKYYVKLKDGSSVPLSTFVSMELKTQPRTLPKLNQLNSATITGVLAGSMGNAVKWAEAKAAEILPAGYYYDFMSESRQYKQEGNALALTFLLAIVMIYLVLAVQFESWRDPMVILVSVPLAISGALVVLNILALPMIGKAGATLNIYSQVGLITLVGLITKHGILMCEVAKEEQLHHGKNKFDAITYAAQIRLRPILMTTAAMIAGLIPLLYATGAGAVMRFSIGIVIVAGLAIGTLFTLFVLPVIYTFLGENHKPLQEFEENKHYPVIAETEHS
>NZ_CP015428.1|WP_041603529.1|266267_267509_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MTTETKKPSFFTKVTLWIILALVLLIFAAVIGFNQFIAKSKANAAANPFPPFATVTATTVNATEWTPVIKAVGTIRPNNGAMLSAQAAGSVTAIHIKSGERVTRGQLLIELDSSVEQATLHASESQLPNAKATLSRYRSLVASKSASKAELDKAQATYNQLVANIESLKAAIKRRQIYAPFDGIVGIVKVNLGEYITAATEIVRVEDSSQMKVSFNVPQTNLADITIGQRVAFSVDAIPNQTFEAKVSAIDSAVTKSTGLVAVEAVVDGRGQLMSGMFARLNIALATEMDQVVVPQIAVTYTMYGESAYVLDKLSEQEKEQLLKVLASQTSSPVSGKKAQKLIENIDGVFKARQVEVKTNDRQGIYAQLKNESIKVGTTLVTSGFQRLRNGAYVTIADKQPVGISKPAIETNL
>NZ_CP015428.1|WP_010945350.1|268148_268370_+|DUF1414-domain-containing-protein
MAKQSKYQSKQFEQLSYDLITILEKHKAPVDLSIMALGNLVSNILLENIQTETQRMVLADTFSTALKNSLKAR
>NZ_CP015428.1|WP_010945351.1|268372_270103_+|DUF3413-domain-containing-protein
MFKPLRQLLPTYSRQYKEEISQRITWGHWFTLFNVVLALCISTRYAFNADWPNTLSGKLYFFTSLFGHFSFIVFAAYLLLLFPLSFIIKNERTFRGLSVIIATIGQTVLLVDTEVFKQFYLHLSPLVWDLLVTPDDNSELSHQWQLLFVPMPIILLAQMLYSRWCWQKLRSFSRQKWGKFVALFFVACFTATHLIYAWADMRLYRPITSQKANYPLSHPMTARNFLAKHGVINRTKLQLNIAENGRLDSFYLNYPKQHLTFNRKPYTNVLIVNMSGLANEMIVAEKMPHLTQISEKTYRFMNHYGSGDSNAANLLGIFYSLSGQYLDSMLANKQTSPLLTAFKQANYQFGLFSHNSFAAPIYQQSIFAGFSLPKIKGNAQAIEKWTAWLNQRLAKPFFSYLDLAMPRTHNSLAPLEHVDAQFNQIWYALQQHNLLMNTLVIITADQANPTTEMNFTKRHLQVPMMIYWQGENQKINVLSSHLDLLPTLLMQLFAVNNPINDYAQGVNLTSPNERIWALASNHKWTVAIMPNGEQYHLDKFGHFEKYNANGEKVQTKRPPLALFLQMIKQSNQFVEK
>NZ_CP015428.1|WP_010945352.1|270304_270655_-|DNA-binding-protein
MITQMEIARHELLRDIEDNVSALCKNYNLDTEICEQISTSVADFLAEHYAGQVISFPKDFYYKIAQRDLDIYNDFTGNNWFFLVKKYGMTESGIRKVINRVRKRIMKHQQPDLFCE
>NZ_CP015428.1|WP_010945353.1|270772_271174_-|regulatory-protein-GemA
MRNKLLQLVHIGKTQLGMDDETYRSLLSQQFYQNSAKNISYSDLIKLVKLLQTKGAKIQLPRSKSSLSPIQRKLWAVWKQMHADSVIDDGSSHGLNSFVKRSLNGDMQWNELTNSQATLILENLKQWQKRVGK
>NZ_CP015428.1|WP_010945354.1|271163_271538_-|hypothetical-protein
MDQQWLKATLGKGVAMLLILRLKNSPPEDSISATLETWLRVLTYKKHYEQELDQWRFEEAFMYLAQTCDWFPNPKQLLDAMPKRKIKELPPPPPKTVEQEEAERLKALSNLQKIKAMLRGCYAK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

492704 : 503286

uncultured_Caudovirales_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010945590.1\|492704_493997_-	purine permease	Q9KX94	Enterobacteria_phage	1.5e-22	28.4
WP_064083124.1\|494074_495913_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_041603561.1\|495999_496551_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_010945593.1\|496736_497402_+	BAX inhibitor protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.8e-48	54.8
WP_010945594.1\|497463_497799_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.0e-28	56.8
WP_010945595.1\|497869_498775_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010945596.1\|498771_499530_+	ATP-binding cassette domain-containing protein	A0A1M7XV31	Cedratvirus	3.0e-15	26.6
WP_010945597.1\|499735_500275_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	6.0e-26	45.0
WP_064083123.1\|500302_502366_+	DNA polymerase III subunit gamma/tau	A0A1L2BWV7	Bacteriophage	2.9e-44	35.8
WP_041603563.1\|502377_503286_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	5.2e-22	30.5

DBSCAN-SWA_2

572355 : 587613

Enterobacteria_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010944553.1\|572355_574926_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	4.2e-125	34.1
WP_010944552.1\|575003_576431_-	aspartate ammonia-lyase	NA	NA	NA	NA
WP_010944551.1\|576559_576847_-	DUF1294 domain-containing protein	NA	NA	NA	NA
WP_010944550.1\|576948_577860_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.1e-64	48.1
WP_010944547.1\|578224_578899_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	3.2e-53	47.7
WP_064085154.1\|578891_579314_+	6-carboxytetrahydropterin synthase QueD	A0A1U9WRB3	Streptococcus_virus	4.7e-18	37.0
WP_010944545.1\|579313_579943_+	7-carboxy-7-deazaguanine synthase QueE	A0A218M2Y8	Acidovorax_phage	2.2e-11	33.6
WP_010944544.1\|580012_581512_-	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	8.0e-52	37.7
WP_010944542.1\|581838_582942_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA
WP_010944541.1\|582942_584025_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_010944540.1\|584136_587613_+	DNA polymerase III subunit alpha	A0A2L1IZ23	Streptomyces_phage	3.5e-191	37.1

DBSCAN-SWA_3

602217 : 624758

Mannheimia_phage(36.0%)

head,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010944524.1\|602217_603216_-	hypothetical protein	A0A125RND5	Pseudomonas_phage	2.9e-34	30.9
WP_010944523.1\|603215_606575_-	tape measure protein	A0A2D1GNK1	Pseudomonas_phage	1.0e-107	30.4
WP_010944522.1\|606589_606844_+	hypothetical protein	NA	NA	NA	NA
WP_010944521.1\|607020_607440_-	hypothetical protein	A0A2D1GNY5	Pseudomonas_phage	1.2e-21	39.7
WP_010944520.1\|607497_608241_-	hypothetical protein	A0A2D1GNQ7	Pseudomonas_phage	1.0e-60	49.4
WP_010944519.1\|608271_608718_-	hypothetical protein	A0A075CI80	Pseudomonas_phage	2.6e-14	32.2
WP_010944518.1\|608714_609101_-	DUF1320 domain-containing protein	A0A2D1GNP0	Pseudomonas_phage	7.9e-20	44.5
WP_010944517.1\|609103_609391_-	hypothetical protein	A0A0M3LPR6	Mannheimia_phage	1.9e-18	70.0
WP_010944516.1\|609437_610361_-\|tail	tail sheath protein	B7SDP1	Haemophilus_phage	4.6e-143	82.8
WP_041603382.1\|610360_611431_-	hypothetical protein	B7SDN9	Haemophilus_phage	5.9e-150	78.3
WP_010944514.1\|611685_612102_-	phage virion morphogenesis protein	A0A0M3LSP9	Mannheimia_phage	5.3e-54	76.6
WP_010944513.1\|612234_613545_-\|head	head morphogenesis protein	B7SDN5	Haemophilus_phage	2.1e-165	67.1
WP_064085151.1\|613528_615166_-	DUF935 domain-containing protein	B7SDN1	Haemophilus_phage	1.3e-252	79.3
WP_010944510.1\|616904_617405_-	DUF1804 family protein	A0A0M3LQI8	Mannheimia_phage	8.5e-75	90.4
WP_010944509.1\|617412_617667_-	hypothetical protein	A0A0M3LP87	Mannheimia_phage	2.4e-17	54.8
WP_010944508.1\|617663_617942_-	hypothetical protein	NA	NA	NA	NA
WP_010944507.1\|617990_618380_-	DUF2681 domain-containing protein	A0A0M3LP93	Mannheimia_phage	9.1e-16	43.5
WP_010944506.1\|618379_618613_-	DUF2644 domain-containing protein	F6MIK0	Haemophilus_phage	4.7e-28	88.0
WP_010944505.1\|618599_618953_-	hypothetical protein	NA	NA	NA	NA
WP_041603380.1\|618957_619506_-	N-acetylmuramoyl-L-alanine amidase	F6MIJ9	Haemophilus_phage	2.9e-76	72.6
WP_010944503.1\|619593_620016_-	hypothetical protein	F6MIJ8	Haemophilus_phage	1.9e-51	67.6
WP_010944502.1\|620144_620354_-	hypothetical protein	NA	NA	NA	NA
WP_010944501.1\|620364_620964_-	phage antirepressor Ant	G9L6G1	Escherichia_phage	7.4e-25	47.0
WP_010944500.1\|621277_621706_-	regulatory protein GemA	F6MIJ6	Haemophilus_phage	1.5e-43	65.0
WP_041603379.1\|621689_622256_-	hypothetical protein	A0A0M3LPP6	Mannheimia_phage	4.5e-72	73.4
WP_050711635.1\|622313_622583_-	DUF551 domain-containing protein	NA	NA	NA	NA
WP_010944497.1\|622592_622796_-	hypothetical protein	NA	NA	NA	NA
WP_010944496.1\|622792_623089_-	hypothetical protein	NA	NA	NA	NA
WP_010944495.1\|623107_623287_-	hypothetical protein	NA	NA	NA	NA
WP_064085207.1\|623290_623509_-	ANR family transcriptional regulator	A0A0M3LSH0	Mannheimia_phage	1.4e-05	58.1
WP_064085150.1\|623592_624210_-	DUF3164 family protein	A0A0M3LQ92	Mannheimia_phage	6.1e-91	79.4
WP_064083113.1\|624220_624565_-	hypothetical protein	A0A0M3LQH1	Mannheimia_phage	7.0e-20	54.9
WP_010944491.1\|624551_624758_-	hypothetical protein	F6MII8	Haemophilus_phage	8.5e-05	47.4

DBSCAN-SWA_4

912256 : 931288

Vibrio_phage(21.05%)

head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010944187.1\|912256_912685_-	hypothetical protein	L7P7Y2	Pseudomonas_phage	3.7e-18	40.5
WP_010944186.1\|912730_913471_-	hypothetical protein	A0A2D1GNQ7	Pseudomonas_phage	1.6e-61	50.6
WP_155727103.1\|913460_913760_-	hypothetical protein	NA	NA	NA	NA
WP_064083079.1\|913653_914085_-	DUF1834 family protein	C9DGP5	Escherichia_phage	5.5e-22	38.2
WP_010944184.1\|914084_914504_-	DUF1320 domain-containing protein	A0A0C4UR02	Shigella_phage	8.8e-17	36.0
WP_010944183.1\|914503_914884_-	hypothetical protein	NA	NA	NA	NA
WP_010944182.1\|914958_915870_-\|head	head protein	C9DGP2	Escherichia_phage	2.0e-82	52.6
WP_010944180.1\|917112_917556_-	phage virion morphogenesis protein	G9BWH2	Planktothrix_phage	3.8e-10	29.8
WP_064085144.1\|919017_920622_-	DUF935 domain-containing protein	A0A0C4UQR8	Shigella_phage	3.9e-137	49.7
WP_088591959.1\|920625_922188_-	hypothetical protein	A0A2I7S9C5	Vibrio_phage	1.6e-159	61.5
WP_010944177.1\|922184_922754_-	DUF3486 family protein	M4MCR3	Vibrio_phage	5.9e-40	46.4
WP_041603330.1\|922776_923076_-	hypothetical protein	A0A0C4UR00	Shigella_phage	1.2e-20	54.1
WP_010944175.1\|923079_923415_-	DUF2730 domain-containing protein	NA	NA	NA	NA
WP_010944174.1\|923411_923642_-	hypothetical protein	NA	NA	NA	NA
WP_010944172.1\|923761_924046_-	DUF2681 domain-containing protein	NA	NA	NA	NA
WP_010944171.1\|924048_924279_-	DUF2644 domain-containing protein	F6MIK0	Haemophilus_phage	9.4e-21	74.6
WP_064083075.1\|924511_925063_-	N-acetylmuramoyl-L-alanine amidase	F6MIJ9	Haemophilus_phage	3.0e-73	69.3
WP_041603328.1\|925139_925475_-	transcriptional regulator	A0A2I7S9J0	Vibrio_phage	8.6e-07	39.1
WP_064083074.1\|925471_925936_-	regulatory protein GemA	Q6QIE7	Burkholderia_phage	7.3e-12	30.9
WP_064083073.1\|925913_926282_-	hypothetical protein	NA	NA	NA	NA
WP_010944164.1\|926263_926734_-	hypothetical protein	A0A2H4JFV8	uncultured_Caudovirales_phage	1.1e-26	43.2
WP_010944163.1\|926811_927087_-	hypothetical protein	A0A2P0P8L3	Salmonella_phage	1.6e-11	49.3
WP_064083071.1\|927086_927824_-	DUF2786 domain-containing protein	A0A2P9JZH4	Alteromonadaceae_phage	9.7e-27	35.0
WP_010944161.1\|927825_928119_-	hypothetical protein	NA	NA	NA	NA
WP_010944160.1\|928127_928463_-	hypothetical protein	NA	NA	NA	NA
WP_010944159.1\|928459_928663_-	hypothetical protein	NA	NA	NA	NA
WP_010944158.1\|928665_928884_-	hypothetical protein	NA	NA	NA	NA
WP_041603325.1\|929278_929497_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_064085143.1\|929507_930125_-	DUF3164 family protein	A4JWM8	Burkholderia_virus	1.8e-66	56.9
WP_010944153.1\|930137_930371_-	hypothetical protein	NA	NA	NA	NA
WP_064085142.1\|930370_931288_-	AAA family ATPase	A0A2I7S9C3	Vibrio_phage	1.2e-58	44.3

DBSCAN-SWA_5

1529741 : 1544785

Bacillus_phage(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010944992.1\|1529741_1533338_+	exodeoxyribonuclease V subunit beta	A7KV33	Bacillus_phage	1.0e-12	21.5
WP_010944993.1\|1533413_1533971_-	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	3.8e-31	46.1
WP_041603472.1\|1534034_1535372_-	membrane protein	NA	NA	NA	NA
WP_010944996.1\|1535799_1536252_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_064083187.1\|1536305_1537526_+	IscS subfamily cysteine desulfurase	A0A2K9L679	Tupanvirus	4.9e-15	24.7
WP_010944998.1\|1537573_1537957_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.7e-51	75.8
WP_010944999.1\|1538090_1538414_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	9.8e-24	46.7
WP_010945000.1\|1538422_1538944_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA
WP_010945001.1\|1538988_1539621_+	DUF2625 family protein	NA	NA	NA	NA
WP_064085185.1\|1539672_1541526_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	2.8e-107	41.8
WP_010945003.1\|1541537_1541879_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_041603474.1\|1541878_1542073_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_010945005.1\|1542111_1542921_-	glycosyltransferase family 8 protein	NA	NA	NA	NA
WP_010945006.1\|1542933_1544172_-	multifunctional CCA addition/repair protein	S5MVS8	Sinorhizobium_phage	1.6e-82	46.0
WP_010945007.1\|1544275_1544785_-	peptidyl-prolyl cis-trans isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	2.5e-13	35.4

DBSCAN-SWA_6

1617733 : 1624246

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010945065.1\|1617733_1618840_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	3.7e-46	36.7
WP_010945066.1\|1618854_1619502_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	8.0e-41	41.9
WP_010945067.1\|1619557_1620763_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	8.5e-105	49.5
WP_010945068.1\|1620872_1621334_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	8.7e-42	58.1
WP_010945070.1\|1621421_1621910_-	transcription elongation factor GreB	NA	NA	NA	NA
WP_010945071.1\|1621917_1622853_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	4.1e-38	35.8
WP_041603676.1\|1622944_1624246_-	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	2.0e-30	32.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage