CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015433	[Haemophilus] ducreyi strain GHA8, complete genome	1 crisprs	cas3,DEDDh,DinG,csa3	0	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015433_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015433_1

985718-985929

Orphan

Consensus_repeat	Method
ACCTTAAACGTGACTAATAATGT	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP015433_1

>merge|NZ_CP015433|1|985718-985929|CRISPRCasFinder
ACATTAAACACTTCTAACAATATCACCTTAAAGAACAAATCCAAATTTACAGCGGGCAACATGACCTTAAACGTGACTAATAATGTTACGTTAAATAATGATTCAGAGCTTGCAGCCAATAATTTAACCTTAAACGTGACTAAGAATGTAACTTTAAATGATGCTTCTAAACTCTCTGCGAATAAGTTGGACTTGAATGTTACCGATAATGT

>NZ_CP015433|1|1|985718-985929|CRISPRCasFinder
ACATTAAACACTTCTAACAATAT	CACCTTAAAGAACAAATCCAAATTTACAGCGGGCAACATG
ACCTTAAACGTGACTAATAATGT	TACGTTAAATAATGATTCAGAGCTTGCAGCCAATAATTTA
ACCTTAAACGTGACTAAGAATGT	AACTTTAAATGATGCTTCTAAACTCTCTGCGAATAAGTTG
GACTTGAATGTTACCGATAATGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015433.1\|WP_010945336.1\|1012334_1012730_+\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NZ_CP015433.1\|WP_010945337.1\|1011895_1012318_+\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NZ_CP015433.1\|WP_041603527.1\|979640_981005_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	unknown	unknown	gnl\|CDD\|181867
NZ_CP015433.1\|WP_010945341.1\|1004519_1005146_+\|23S-rRNA-(uridine(2552)-2'-O)-methyltransferase-RlmE	unknown	unknown	gnl\|CDD\|183025
NZ_CP015433.1\|WP_010945346.1\|981926_983588_+\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092
NZ_CP015433.1\|WP_010945334.1\|1014184_1015108_+\|cation-diffusion-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|181919
NZ_CP015433.1\|WP_010945338.1\|1011201_1011588_-\|YhcB-family-protein	unknown	unknown	gnl\|CDD\|377646
NZ_CP015433.1\|WP_010945344.1\|1001065_1002637_-\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP015433.1\|WP_010945335.1\|1013617_1014157_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015433.1\|WP_010945343.1\|1002786_1004250_-\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
NZ_CP015433.1\|WP_064083224.1\|1005187_1007107_+\|ATP-dependent-zinc-metalloprotease-FtsH	unknown	unknown	gnl\|CDD\|182683
NZ_CP015433.1\|WP_010945353.1\|971486_971888_+\|regulatory-protein-GemA	unknown	unknown	gnl\|CDD\|377635
NZ_CP015433.1\|WP_010945350.1\|974290_974512_-\|DUF1414-domain-containing-protein	unknown	unknown	gnl\|CDD\|237471
NZ_CP015433.1\|WP_155727101.1\|983952_984090_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015433.1\|WP_010945348.1\|976406_979517_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|169983
NZ_CP015433.1\|WP_064083152.1\|1015088_1015862_+\|Zn-ribbon-containing-protein	unknown	unknown	gnl\|CDD\|370804
NZ_CP015433.1\|WP_041603529.1\|975151_976393_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP015433.1\|WP_010945352.1\|972005_972356_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|337191
NZ_CP015433.1\|WP_010945354.1\|971122_971497_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015433.1\|WP_010945351.1\|972557_974288_-\|DUF3413-domain-containing-protein	unknown	unknown	gnl\|CDD\|225625

Protein	Function_ID	Function_description	E-value
NZ_CP015433.1\|WP_010945336.1\|1012334_1012730_+\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	6.00922e-82
NZ_CP015433.1\|WP_010945337.1\|1011895_1012318_+\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	6.59279e-99
NZ_CP015433.1\|WP_041603527.1\|979640_981005_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	gnl\|CDD\|181867	PRK09451, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU.	0
NZ_CP015433.1\|WP_010945346.1\|981926_983588_+\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP015433.1\|WP_010945334.1\|1014184_1015108_+\|cation-diffusion-facilitator-family-transporter	gnl\|CDD\|181919	PRK09509, fieF, CDF family cation-efflux pump FieF.	2.33908e-140
NZ_CP015433.1\|WP_010945338.1\|1011201_1011588_-\|YhcB-family-protein	gnl\|CDD\|377646	pfam06295, DUF1043, Protein of unknown function (DUF1043). This family consists of several hypothetical bacterial proteins of unknown function.	3.50685e-43
NZ_CP015433.1\|WP_010945344.1\|1001065_1002637_-\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP015433.1\|WP_010945343.1\|1002786_1004250_-\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
NZ_CP015433.1\|WP_064083224.1\|1005187_1007107_+\|ATP-dependent-zinc-metalloprotease-FtsH	gnl\|CDD\|182683	PRK10733, hflB, ATP-dependent zinc metalloprotease FtsH.	0
NZ_CP015433.1\|WP_010945353.1\|971486_971888_+\|regulatory-protein-GemA	gnl\|CDD\|377635	pfam06252, DUF1018, Protein of unknown function (DUF1018). This family consists of several bacterial and phage proteins of unknown function.	1.19464e-33
NZ_CP015433.1\|WP_010945350.1\|974290_974512_-\|DUF1414-domain-containing-protein	gnl\|CDD\|237471	PRK13689, PRK13689, hypothetical protein; Provisional.	1.30255e-29
NZ_CP015433.1\|WP_010945348.1\|976406_979517_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|169983	PRK09579, PRK09579, multidrug efflux RND transporter permease subunit.	0
NZ_CP015433.1\|WP_010945341.1\|1004519_1005146_+\|23S-rRNA-(uridine(2552)-2'-O)-methyltransferase-RlmE	gnl\|CDD\|183025	PRK11188, rrmJ, 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE.	2.48188e-156
NZ_CP015433.1\|WP_064083152.1\|1015088_1015862_+\|Zn-ribbon-containing-protein	gnl\|CDD\|370804	pfam10071, DUF2310, Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310). Members of this family of proteobacterial zinc ribbon proteins are thought to bind to nucleic acids, however their exact function has not as yet been defined.	7.41921e-142
NZ_CP015433.1\|WP_041603529.1\|975151_976393_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.55184e-56
NZ_CP015433.1\|WP_010945352.1\|972005_972356_+\|DNA-binding-protein	gnl\|CDD\|337191	pfam08765, Mor, Mor transcription activator family. Mor (Middle operon regulator) is a sequence specific DNA binding protein. It mediates transcription activation through its interactions with the C-terminal domains of the alpha and sigma subunits of bacterial RNA polymerase. The N terminal region of Mor is the dimerization region, and the C terminal contains a helix-turn-helix motif which binds DNA.	9.1108e-50
NZ_CP015433.1\|WP_010945351.1\|972557_974288_-\|DUF3413-domain-containing-protein	gnl\|CDD\|225625	COG3083, COG3083, Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only].	0

>NZ_CP015433.1|WP_155727101.1|983952_984090_+|hypothetical-protein
MTKDLIKQARESVPLNQQLHHLKNKEAYENTDQQLSYQVNGSISF
>NZ_CP015433.1|WP_010945346.1|981926_983588_+|phospho-sugar-mutase
MTTIFTIAQHWLAQDPDLETQNELSHLIDNAKAGGKQALKELTARFGGRLQFGTAGLRGPLQAGPMGMNRVLVAQAAAGLALYLKTYDKQPSIVIGYDGRKNSDVFARDTAEIMAGVGIKAYLLPRKLPTPVLAYAIKHLDTTAGVMVTASHNPPEDNGYKVYLGKANGGGQIVSPADQQIAAFIDQVATGNIRELARSQDFNLLDDEVINAYIEKTARLSQENKMALNYVYTAMHGVGYEVLQKTLKQAGLSQPKLVSEQIEPDGNFPTVSFPNPEEKGALDLAIKLAQQENAEFIIANDPDADRLAVAIPDAQGIWKSLHGNVLGCLLGWHLAKKYHAQGQQGVLACSLVSSPALAEIAKKYGLKSEETLTGFKYIGKVDNLLFGFEEAIGYLVDPDKVRDKDGISAAVAFLDLVLYLKKQGKTILDYINEFNQQFGAYISGQISIRVSDLAEISKLMTALRNNPPTKIGGVKVTQLIDHTKTDRQSDILVFNLANGSRLITRPSGTEPKIKFYLDVKGNNGQQEAERALAHFDESVRQMLRQTQYGNQDC
>NZ_CP015433.1|WP_041603527.1|979640_981005_+|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU
MTPFSVVILAAGKGTRMYSDLPKVLHPIAGKSMVKHVIDTVKQMDAKQIHLVYGHGGDLLKTHLKTEPLNWVLQAEQLGTGHAMQQAATFFADDENILMLYGDTPLITAQTLTRLIAAKPANGIALLTVELADPTGYGRIIRQNGSVVAIVEQKDASPTQLTICEVNTGVMVASGASFKKWLSRLNNQNAQGEYYITDIIAMANQEGYSVQAVQANTLMEVEGANNHLQLAALERFYQQTQAEKLLLSGVSLMDPHRFDLRGSLQYGKDIQIDVNVILEGEVKLGNRVRIGAGCILKNCVVGDDVDIKPYSVFENAIIGNKAQVGPFARLRPGAKLEAESHVGNFVEIKNAHIGKGSKVNHLAYVGDAEVGENCNLGAGVITCNYDGANKFKTTIGNNVFVGSDVQLIAPVNIADGATIGAGATITKNIAENELVISRVPQRHIQGWQRPTKKK
>NZ_CP015433.1|WP_010945348.1|976406_979517_+|efflux-RND-transporter-permease-subunit
MFTDIFIKRPVLAISISIVFIILGLQAMFKLQVREYPEMTNTIITVTTNYAGADAETMQAFITSKLEESIAQADNIDYIKSDSAPSTSNITIKMKLNTNPGIAVADITSKVNAVRSQLPSNIDDPSIRSSTGAMEAIVFIRFSSKELSAPQLTDYIERVVKPQMFTVNGVSKINYFGGASFGLRIWLDPAKIAGLGLSANEVTAALAANNVQTAAGNSNGYYTEYRNKVETTTKSVEELASLVIKTLPNGSNIKLGDIAEISLEKARDDSRGIVNGREAVVLAVEAASTANALDVAKHIYPKFAEIQSNLPASVEAEVIYDKTIAINSSIKEVVKTILEAVIIVLVVIVLFLGSFRAMIIPIVTIPISLIGVLMVLQGFGFTINLLTLLGLILAIGLVVDDAIVVLENVERHIKQNGETPFRAAIIGTREIATPVIAMTITLMAVYSPMALMSGITGSLFKEFSLTLAGAVFISGVAALTLSPMMTSKILKQSEKPSWLEQRIEKTLHKVTDIYTKILLVVMASRYAILVFAGLIFASLPMLFNSLSSEVAPAEDRGIVMGMASGPANVNMDYMQDVMFPVAQQINQLPEVNATQIMPGFPSSNGSFMLVPLKDWSERTRSQKEVLAEVNKITNEVTEASVIGFEFPEISTGESGLPFSFVITTANDYRDLAQVASDFLLAAQSSGQFFFNQLDLKFDTASMAIKIDREKMGTYGVTAADIRSVLGSFLSGATLARVDIDGRAYDIISQVKRSERLSPQDLAKYYVKLKDGSSVPLSTFVSMELKTQPRTLPKLNQLNSATITGVLAGSMGNAVKWAEAKAAEILPAGYYYDFMSESRQYKQEGNALALTFLLAIVMIYLVLAVQFESWRDPMVILVSVPLAISGALVVLNILALPMIGKAGATLNIYSQVGLITLVGLITKHGILMCEVAKEEQLHHGKNKFDAITYAAQIRLRPILMTTAAMIAGLIPLLYATGAGAVMRFSIGIVIVAGLAIGTLFTLFVLPVIYTFLGENHKPLQEFEENKHYPVIAETEHS
>NZ_CP015433.1|WP_041603529.1|975151_976393_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MTTETKKPSFFTKVTLWIILALVLLIFAAVIGFNQFIAKSKANAAANPFPPFATVTATTVNATEWTPVIKAVGTIRPNNGAMLSAQAAGSVTAIHIKSGERVTRGQLLIELDSSVEQATLHASESQLPNAKATLSRYRSLVASKSASKAELDKAQATYNQLVANIESLKAAIKRRQIYAPFDGIVGIVKVNLGEYITAATEIVRVEDSSQMKVSFNVPQTNLADITIGQRVAFSVDAIPNQTFEAKVSAIDSAVTKSTGLVAVEAVVDGRGQLMSGMFARLNIALATEMDQVVVPQIAVTYTMYGESAYVLDKLSEQEKEQLLKVLASQTSSPVSGKKAQKLIENIDGVFKARQVEVKTNDRQGIYAQLKNESIKVGTTLVTSGFQRLRNGAYVTIADKQPVGISKPAIETNL
>NZ_CP015433.1|WP_010945350.1|974290_974512_-|DUF1414-domain-containing-protein
MAKQSKYQSKQFEQLSYDLITILEKHKAPVDLSIMALGNLVSNILLENIQTETQRMVLADTFSTALKNSLKAR
>NZ_CP015433.1|WP_010945351.1|972557_974288_-|DUF3413-domain-containing-protein
MFKPLRQLLPTYSRQYKEEISQRITWGHWFTLFNVVLALCISTRYAFNADWPNTLSGKLYFFTSLFGHFSFIVFAAYLLLLFPLSFIIKNERTFRGLSVIIATIGQTVLLVDTEVFKQFYLHLSPLVWDLLVTPDDNSELSHQWQLLFVPMPIILLAQMLYSRWCWQKLRSFSRQKWGKFVALFFVACFTATHLIYAWADMRLYRPITSQKANYPLSHPMTARNFLAKHGVINRTKLQLNIAENGRLDSFYLNYPKQHLTFNRKPYTNVLIVNMSGLANEMIVAEKMPHLTQISEKTYRFMNHYGSGDSNAANLLGIFYSLSGQYLDSMLANKQTSPLLTAFKQANYQFGLFSHNSFAAPIYQQSIFAGFSLPKIKGNAQAIEKWTAWLNQRLAKPFFSYLDLAMPRTHNSLAPLEHVDAQFNQIWYALQQHNLLMNTLVIITADQANPTTEMNFTKRHLQVPMMIYWQGENQKINVLSSHLDLLPTLLMQLFAVNNPINDYAQGVNLTSPNERIWALASNHKWTVAIMPNGEQYHLDKFGHFEKYNANGEKVQTKRPPLALFLQMIKQSNQFVEK
>NZ_CP015433.1|WP_010945352.1|972005_972356_+|DNA-binding-protein
MITQMEIARHELLRDIEDNVSALCKNYNLDTEICEQISTSVADFLAEHYAGQVISFPKDFYYKIAQRDLDIYNDFTGNNWFFLVKKYGMTESGIRKVINRVRKRIMKHQQPDLFCE
>NZ_CP015433.1|WP_010945353.1|971486_971888_+|regulatory-protein-GemA
MRNKLLQLVHIGKTQLGMDDETYRSLLSQQFYQNSAKNISYSDLIKLVKLLQTKGAKIQLPRSKSSLSPIQRKLWAVWKQMHADSVIDDGSSHGLNSFVKRSLNGDMQWNELTNSQATLILENLKQWQKRVGK
>NZ_CP015433.1|WP_010945354.1|971122_971497_+|hypothetical-protein
MDQQWLKATLGKGVAMLLILRLKNSPPEDSISATLETWLRVLTYKKHYEQELDQWRFEEAFMYLAQTCDWFPNPKQLLDAMPKRKIKELPPPPPKTVEQEEAERLKALSNLQKIKAMLRGCYAK
>NZ_CP015433.1|WP_010945344.1|1001065_1002637_-|glutamine-hydrolyzing-GMP-synthase
MNNIHNHKILILDFGSQYTQLIARRIREIGVYCELWAWDVTEKQIREFNPTGIILSGGPESTTETNSPHAPEYVFKAGVPVLGICYGMQTMAMQLGGLTEASEQREFGYAAVELQHADQLFAKLNDDLTASQPKLDVWMSHGDKVTRLPAGFQTTAVTPTCPIAAMSDEKRRFYGVQFHPEVTHTKSGLALLTNFVENICGCARSWTPENIIEDAVAKIKQKVGNDQVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFGDKFGLNIIRVNAEERFLEALKGIDEPEAKRKIIGKVFIDIFDDEAKKLTDVKWLAQGTIYPDVIESAASKTGKAHVIKSHHNVGGLPDYMKLGLVEPLRELFKDEVRKIGLTLGLPAEMLNRHPFPGPGLGVRVLGEIKKEYCDLLRNADAIFIEELYKSGWYYKVSQAFTVFLPVKSVGVMGDGRKYDWVVSLRAVETIDFMTAHWAHLPYELLGKISNRIINEVNGISRVVYDVSGKPPATIEWE
>NZ_CP015433.1|WP_010945343.1|1002786_1004250_-|IMP-dehydrogenase
MLRIKQEALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPMLSAAMDTVTETKLAISLAQEGGIGFIHKNMSIERQADRVRKVKKFESGIVSEPVTVSPELTLAELAQLVKKNGFAGYPVVDNENNLVGIITGRDTRFVQDLTQTVSKVMTHRDRLVTVKENAKREEILALMHEHRVEKVLMVDDAFKLKGMITVKDFQKAEQKPNACKDEFGRLRVGAAVGAGPGNEERIDALVKAGIDVLLIDSSHGHSEGVLQRVRETRAKYPDLPIVAGNVATAEGAIALADAGASAVKVGIGPGSICTTRIVTGVGVPQITAIAEAAEALKDRDIPIIADGGIRYFGDISKAIAAGASCVMVGSMFAGTEEAPGEIELYQGRVFKSYRGMGSLGAMSKGSSDRYFQSDNAADKLVPEGIEGRIPYKGYLKEIIHQQMGDLRSCMGLTGSATIEDLRTKAQFVRISGAGIKESHVHDVTITKEAPNYHMG
>NZ_CP015433.1|WP_010945341.1|1004519_1005146_+|23S-rRNA-(uridine(2552)-2'-O)-methyltransferase-RlmE
MGKKRSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQSDRLFRPGMTVVDLGAAPGGWSQYAVTQIGNQGRIIACDILDMNPIVGVDFLQGDFREVSVLNALLARVGDEMVDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLAPKGSFVVKVFQGEGFDDYLRDIRSMFTTVKVRKPEASRDRSREVYIVATGYKG
>NZ_CP015433.1|WP_064083224.1|1005187_1007107_+|ATP-dependent-zinc-metalloprotease-FtsH
MVKNIVLWVVVAIVLMTAFEGFNSNFNNSNTVSYSTFLNDIKSNQLKEVNFKRNDETISVIKNDGTEYKTVMPMNDQYLLSDLAKTNATITGQPQERRGVLFQIFISWFPMVMLIGFWLFYMRQMQGGGRGAMGFGKSKAKMLTPEQVKTRFSDVAGCDEAKEEVSEVVDFLTEPSKFQKLGGRIPKGILMVGPPGTGKTLLAKAIAGEAGVPFFTMAGSDFVEMFVGVGASRVRDLFDQAKKNAPCIIFIDEIDAVGRKRGGAGLSGGHDEREQTLNQMLVEMDGFEGSEGVIIIAATNRADVLDDALTRPGRFDRQVTVDLPNVKGREQILKVHMKKVPLASSVDPMIVARGTPGYSGAQLANLVNEAALFAARKNRTVVTMDDFDKARDKINMGPERRSNTMTEKELMNTAYHEAGHVIVGYLMPEHDPLNKVTIVPRGQALGFAQFLPEGDRVSETFTKLESQLSTLFAGRIAEGLIFGDDKITTGASSDIHRATQIARAMVTQWGFSKELGPLFYQNEDGMGAIKGVSEASQKLIDQEMRIIIDRNYARAKQTLEENIDILHAMKDALLKYETLDRKQIDDLMHRRPVGEPEGWNDDKEENSSNDSSDATSASNTIEEAKPNTDADVADNRVDA
>NZ_CP015433.1|WP_010945338.1|1011201_1011588_-|YhcB-family-protein
MEQWTTEIWFSISIAFLIGTLCGVLVMRFFKGNIQQQIQLKSELASAEAKIEEQKQQLERHFEQSANLLENLAEDYKKLYTHFAQNSEQLLPESNQVEFFKRLKNHANGDEDNQPRDYSDGSSGLLKS
>NZ_CP015433.1|WP_010945337.1|1011895_1012318_+|50S-ribosomal-protein-L13
MKTFVAETVKRDWYVVDAAGKTLGRLATELASRLRGKHKAEYTPHVDTGDYIIVINAEKVVVTGKKETDKIYYWHTGYVGGIKDATFKEMISRRPEAVIEIAVKGMLPKGPLGRDMFRKLKVYAGNTHNHAAQQPQVLDI
>NZ_CP015433.1|WP_010945336.1|1012334_1012730_+|30S-ribosomal-protein-S9
MTAANQNYGTGRRKSSSARVFIKPGSGNITINQRSLEVYFGRETSRMVVRQPLELVELLDKLDLYITVKGGGISGQAGAIRHGITRALMEYDETLRPALRAAGFVTRDARRVERKKVGLHKARRRPQYSKR
>NZ_CP015433.1|WP_010945335.1|1013617_1014157_+|hypothetical-protein
MRLLLIIFCCFLTACQMLKKTFVVPESIPFQGKSYFKVTDNMLEGMRHLLFLPAEGNQHPDNWHNAIFIFLDQNKTSTMMQRMALRKKVFSNQQDTIAQIKIIENELYSAIIYPPTERFNDILLEVSRGRDSACGFAQIQVANKRAILTEKNANLTAYQAELNSLAQQLSTLAWQVACQ
>NZ_CP015433.1|WP_010945334.1|1014184_1015108_+|cation-diffusion-facilitator-family-transporter
MEQQYAKLVKRAANVAIIVACSLILIKTFAWWKTGSISILASMTDSMVDLFASMTNILVLRFALQPADKTHTFGHGKAESLAAIAQSAFITGTAVFLLLQGIHNLNNPVLIEDSQLGVIVSIISIVFTAALVFYQKKVVSITQSPAIQADSLHYQTDLFMNAAILVAMLLNIYGFIYADAIFAIGIALYISINAFKMFWEAVQVLLDKALPEEDINQILTIVANQPQIIGIHDLLTRQAGAVRFIQLHLELEDHLSLLEAHTITDNLEQKILAAFPLSEVIIHQEPTSIVQQELVLGQVKNYVPSYR
>NZ_CP015433.1|WP_064083152.1|1015088_1015862_+|Zn-ribbon-containing-protein
MYQVIANFSFQNFEHDPVILINQIINQWRYNGQIIGREFSVTYHTQPSAHFQVRLATPEQISLMPEWNNDQVTEALSQAAEKGVEFESFEIIGRDYQAEQTSENSNARFYILYTTHLDSCSPLYNGDDFCPVPLYRLLQKDQSLAQALIKWQENWQACDQLQMNGTILEQPALNEISEIDSNLAQLGIKLCREIERVTQVPTYYYLYRLGTDEAVEYQRKCSSCGAEWRLTEPLHQIFHFKCDKCRLISNLSWQLQK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

214205 : 226476

Vibrio_phage(30.77%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064083070.1\|214205_215123_+	AAA family ATPase	A0A2I7S9C3	Vibrio_phage	3.5e-58	43.9
WP_010944153.1\|215122_215356_+	hypothetical protein	NA	NA	NA	NA
WP_010944154.1\|215368_215986_+	DUF3164 family protein	A4JWM8	Burkholderia_virus	3.6e-67	57.4
WP_041603325.1\|215996_216215_+	ANR family transcriptional regulator	NA	NA	NA	NA
WP_010944158.1\|216609_216828_+	hypothetical protein	NA	NA	NA	NA
WP_010944159.1\|216830_217034_+	hypothetical protein	NA	NA	NA	NA
WP_010944160.1\|217030_217366_+	hypothetical protein	NA	NA	NA	NA
WP_010944161.1\|217374_217668_+	hypothetical protein	NA	NA	NA	NA
WP_064083071.1\|217669_218407_+	DUF2786 domain-containing protein	A0A2P9JZH4	Alteromonadaceae_phage	9.7e-27	35.0
WP_064083072.1\|218406_218682_+	hypothetical protein	A1YZS4	Burkholderia_virus	1.8e-10	44.4
WP_010944164.1\|218759_219230_+	hypothetical protein	A0A2H4JFV8	uncultured_Caudovirales_phage	1.1e-26	43.2
WP_064083073.1\|219211_219580_+	hypothetical protein	NA	NA	NA	NA
WP_064083074.1\|219557_220022_+	regulatory protein GemA	Q6QIE7	Burkholderia_phage	7.3e-12	30.9
WP_041603328.1\|220018_220354_+	transcriptional regulator	A0A2I7S9J0	Vibrio_phage	8.6e-07	39.1
WP_064083075.1\|220430_220982_+	N-acetylmuramoyl-L-alanine amidase	F6MIJ9	Haemophilus_phage	3.0e-73	69.3
WP_010944171.1\|221214_221445_+	DUF2644 domain-containing protein	F6MIK0	Haemophilus_phage	9.4e-21	74.6
WP_010944172.1\|221447_221732_+	DUF2681 domain-containing protein	NA	NA	NA	NA
WP_010944174.1\|221851_222082_+	hypothetical protein	NA	NA	NA	NA
WP_064083076.1\|222078_222414_+	DUF2730 domain-containing protein	NA	NA	NA	NA
WP_041603330.1\|222417_222717_+	hypothetical protein	A0A0C4UR00	Shigella_phage	1.2e-20	54.1
WP_010944177.1\|222739_223309_+	DUF3486 family protein	M4MCR3	Vibrio_phage	5.9e-40	46.4
WP_155727907.1\|223305_224868_+	hypothetical protein	A0A2I7S9C5	Vibrio_phage	2.7e-159	61.3
WP_064083078.1\|224871_226476_+	DUF935 domain-containing protein	A0A0C4UQR8	Shigella_phage	6.0e-138	49.9

DBSCAN-SWA_2

585497 : 607040

Haemophilus_phage(37.5%)

head,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010944491.1\|585497_585704_+	hypothetical protein	F6MII8	Haemophilus_phage	8.5e-05	47.4
WP_064083113.1\|585690_586035_+	hypothetical protein	A0A0M3LQH1	Mannheimia_phage	7.0e-20	54.9
WP_010944493.1\|586045_586663_+	DUF3164 family protein	A0A0M3LQ92	Mannheimia_phage	2.7e-91	79.9
WP_041603377.1\|586746_586965_+	ANR family transcriptional regulator	A0A0M3LSH0	Mannheimia_phage	1.4e-05	58.1
WP_010944495.1\|586968_587148_+	hypothetical protein	NA	NA	NA	NA
WP_010944496.1\|587166_587463_+	hypothetical protein	NA	NA	NA	NA
WP_010944497.1\|587459_587663_+	hypothetical protein	NA	NA	NA	NA
WP_050711635.1\|587672_587942_+	DUF551 domain-containing protein	NA	NA	NA	NA
WP_041603379.1\|587999_588566_+	hypothetical protein	A0A0M3LPP6	Mannheimia_phage	4.5e-72	73.4
WP_064083114.1\|588549_588978_+	regulatory protein GemA	F6MIJ6	Haemophilus_phage	4.3e-43	64.3
WP_010944501.1\|589291_589891_+	phage antirepressor Ant	G9L6G1	Escherichia_phage	7.4e-25	47.0
WP_064083115.1\|589901_590111_+	hypothetical protein	NA	NA	NA	NA
WP_010944503.1\|590239_590662_+	hypothetical protein	F6MIJ8	Haemophilus_phage	1.9e-51	67.6
WP_041603380.1\|590749_591298_+	N-acetylmuramoyl-L-alanine amidase	F6MIJ9	Haemophilus_phage	2.9e-76	72.6
WP_010944505.1\|591302_591656_+	hypothetical protein	NA	NA	NA	NA
WP_010944506.1\|591642_591876_+	DUF2644 domain-containing protein	F6MIK0	Haemophilus_phage	4.7e-28	88.0
WP_010944507.1\|591875_592265_+	DUF2681 domain-containing protein	A0A0M3LP93	Mannheimia_phage	9.1e-16	43.5
WP_010944508.1\|592313_592592_+	hypothetical protein	NA	NA	NA	NA
WP_010944509.1\|592588_592843_+	hypothetical protein	A0A0M3LP87	Mannheimia_phage	2.4e-17	54.8
WP_010944510.1\|592850_593351_+	DUF1804 family protein	A0A0M3LQI8	Mannheimia_phage	8.5e-75	90.4
WP_010944512.1\|595089_596727_+	DUF935 domain-containing protein	B7SDN1	Haemophilus_phage	2.0e-253	79.5
WP_010944513.1\|596710_598021_+\|head	head morphogenesis protein	B7SDN5	Haemophilus_phage	2.1e-165	67.1
WP_010944514.1\|598153_598570_+	phage virion morphogenesis protein	A0A0M3LSP9	Mannheimia_phage	5.3e-54	76.6
WP_064083116.1\|598824_599895_+	hypothetical protein	B7SDN9	Haemophilus_phage	2.3e-149	78.1
WP_010944516.1\|599894_600818_+\|tail	tail sheath protein	B7SDP1	Haemophilus_phage	4.6e-143	82.8
WP_010944517.1\|600864_601152_+	hypothetical protein	A0A0M3LPR6	Mannheimia_phage	1.9e-18	70.0
WP_010944518.1\|601154_601541_+	DUF1320 domain-containing protein	A0A2D1GNP0	Pseudomonas_phage	7.9e-20	44.5
WP_010944519.1\|601537_601984_+	hypothetical protein	A0A075CI80	Pseudomonas_phage	2.6e-14	32.2
WP_010944520.1\|602014_602758_+	hypothetical protein	A0A2D1GNQ7	Pseudomonas_phage	1.0e-60	49.4
WP_010944521.1\|602815_603235_+	hypothetical protein	A0A2D1GNY5	Pseudomonas_phage	1.2e-21	39.7
WP_010944522.1\|603411_603666_-	hypothetical protein	NA	NA	NA	NA
WP_010944523.1\|603680_607040_+	tape measure protein	A0A2D1GNK1	Pseudomonas_phage	1.0e-107	30.4

DBSCAN-SWA_3

622673 : 637931

Streptomyces_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010944540.1\|622673_626150_-	DNA polymerase III subunit alpha	A0A2L1IZ23	Streptomyces_phage	3.5e-191	37.1
WP_010944541.1\|626261_627344_-	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_010944542.1\|627344_628448_-	LPS export ABC transporter permease LptF	NA	NA	NA	NA
WP_010944544.1\|628774_630274_+	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	8.0e-52	37.7
WP_010944545.1\|630343_630973_-	7-carboxy-7-deazaguanine synthase QueE	A0A218M2Y8	Acidovorax_phage	2.2e-11	33.6
WP_010944546.1\|630972_631395_-	6-carboxytetrahydropterin synthase QueD	A0A1U9WRB3	Streptococcus_virus	4.3e-19	37.7
WP_010944547.1\|631387_632062_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	3.2e-53	47.7
WP_010944550.1\|632426_633338_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.1e-64	48.1
WP_010944551.1\|633439_633727_+	DUF1294 domain-containing protein	NA	NA	NA	NA
WP_064083119.1\|633855_635283_+	aspartate ammonia-lyase	NA	NA	NA	NA
WP_010944553.1\|635360_637931_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	4.2e-125	34.1

DBSCAN-SWA_4

706780 : 717362

uncultured_Caudovirales_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041603563.1\|706780_707689_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	5.2e-22	30.5
WP_064083123.1\|707700_709764_-	DNA polymerase III subunit gamma/tau	A0A1L2BWV7	Bacteriophage	2.9e-44	35.8
WP_010945597.1\|709791_710331_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	6.0e-26	45.0
WP_010945596.1\|710536_711295_-	ATP-binding cassette domain-containing protein	A0A1M7XV31	Cedratvirus	3.0e-15	26.6
WP_010945595.1\|711291_712197_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010945594.1\|712267_712603_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.0e-28	56.8
WP_010945593.1\|712664_713330_-	BAX inhibitor protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.8e-48	54.8
WP_041603561.1\|713515_714067_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_064083124.1\|714153_715992_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_010945590.1\|716069_717362_+	purine permease	Q9KX94	Enterobacteria_phage	1.5e-22	28.4

DBSCAN-SWA_5

944172 : 961161

Pseudomonas_phage(72.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010944523.1\|944172_947532_-	tape measure protein	A0A2D1GNK1	Pseudomonas_phage	1.0e-107	30.4
WP_010944522.1\|947546_947801_+	hypothetical protein	NA	NA	NA	NA
WP_010944521.1\|947977_948397_-	hypothetical protein	A0A2D1GNY5	Pseudomonas_phage	1.2e-21	39.7
WP_010944520.1\|948454_949198_-	hypothetical protein	A0A2D1GNQ7	Pseudomonas_phage	1.0e-60	49.4
WP_005597522.1\|949197_949455_-	hypothetical protein	NA	NA	NA	NA
WP_018652950.1\|949451_949904_-	hypothetical protein	A0A0S4L2X9	Pseudomonas_phage	2.1e-16	32.7
WP_010945390.1\|949896_950406_-	DUF1320 domain-containing protein	Q5ZQX5	Pseudomonas_phage	4.5e-31	42.9
WP_010945389.1\|950414_951341_-	hypothetical protein	A0A0S4L2T7	Pseudomonas_phage	1.1e-107	63.6
WP_010945388.1\|951391_951760_-	hypothetical protein	Q5ZQX8	Pseudomonas_phage	6.6e-16	42.9
WP_010945387.1\|951756_952773_-	hypothetical protein	Q5ZQY0	Pseudomonas_phage	3.0e-42	61.2
WP_010945386.1\|952995_953487_-	phage virion morphogenesis protein	Q5ZQY1	Pseudomonas_phage	6.3e-30	38.4
WP_064083144.1\|954837_956349_-	DUF935 family protein	Q5ZQY4	Pseudomonas_phage	3.8e-142	52.7
WP_064083145.1\|956351_957971_-	hypothetical protein	Q6QIC1	Burkholderia_phage	5.8e-181	64.4
WP_010945382.1\|957970_958510_-	DUF3486 family protein	A4JWJ3	Burkholderia_virus	8.9e-46	52.2
WP_010945381.1\|958519_958825_-	hypothetical protein	Q5ZQY7	Pseudomonas_phage	5.1e-22	52.0
WP_010945380.1\|958826_959177_-	hypothetical protein	Q6QIC4	Burkholderia_phage	5.9e-06	28.2
WP_041603711.1\|959279_959510_-	hypothetical protein	H6V8N0	Pseudomonas_phage	9.4e-05	45.5
WP_010945378.1\|959704_960313_-	transglycosylase SLT domain-containing protein	J9SH25	Pseudomonas_phage	5.5e-60	60.4
WP_010945377.1\|960315_960690_-	membrane protein	Q6QIC8	Burkholderia_phage	8.1e-22	52.2
WP_041603709.1\|960906_961161_+	hypothetical protein	B7SDP6	Haemophilus_phage	9.7e-19	51.9

DBSCAN-SWA_6

964382 : 972356

Pseudomonas_phage(44.44%)

transposase,integrase

attL 961320:961335|attR 980567:980582

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
961320:961335	attL	NA	NA	NA	NA
WP_010945369.1\|964382_964577_+	DNA-binding protein	Q5ZQZ9	Pseudomonas_phage	1.5e-11	63.6
WP_064083146.1\|964678_964966_+	hypothetical protein	NA	NA	NA	NA
WP_010945365.1\|965227_965530_+	helix-turn-helix domain-containing protein	A0A0S4L7B4	Pseudomonas_phage	9.5e-13	41.8
WP_064083147.1\|965559_966522_+	hypothetical protein	J9SND0	Pseudomonas_phage	4.5e-24	26.7
WP_064083148.1\|966532_968335_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q6QIE0	Burkholderia_phage	2.9e-125	41.7
WP_041603531.1\|968357_969530_+	AAA family ATPase	A4JWN1	Burkholderia_virus	1.6e-111	55.8
WP_064083149.1\|969522_969753_+	hypothetical protein	NA	NA	NA	NA
WP_064083150.1\|969727_970252_+	host-nuclease inhibitor protein Gam	F6MIJ0	Haemophilus_phage	3.0e-38	48.3
WP_010945358.1\|970248_970461_+	ANR family transcriptional regulator	NA	NA	NA	NA
WP_010945355.1\|970664_971141_+	hypothetical protein	A0A2H4JFV8	uncultured_Caudovirales_phage	2.2e-27	44.4
WP_010945354.1\|971122_971497_+	hypothetical protein	NA	NA	NA	NA
WP_010945353.1\|971486_971888_+	regulatory protein GemA	F8TVB3	EBPR_siphovirus	6.5e-09	31.6
WP_010945352.1\|972005_972356_+	DNA-binding protein	J9SGX4	Pseudomonas_phage	1.7e-13	35.2
980567:980582	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1294425 : 1300938

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041603676.1\|1294425_1295727_+	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	2.0e-30	32.6
WP_010945071.1\|1295818_1296754_+	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	4.1e-38	35.8
WP_010945070.1\|1296761_1297250_+	transcription elongation factor GreB	NA	NA	NA	NA
WP_010945068.1\|1297337_1297799_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	8.7e-42	58.1
WP_010945067.1\|1297908_1299114_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	8.5e-105	49.5
WP_010945066.1\|1299169_1299817_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	8.0e-41	41.9
WP_010945065.1\|1299831_1300938_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	3.7e-46	36.7

DBSCAN-SWA_8

1373898 : 1388942

uncultured_Mediterranean_phage(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010945007.1\|1373898_1374408_+	peptidyl-prolyl cis-trans isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	2.5e-13	35.4
WP_010945006.1\|1374511_1375750_+	multifunctional CCA addition/repair protein	S5MVS8	Sinorhizobium_phage	1.6e-82	46.0
WP_010945005.1\|1375762_1376572_+	glycosyltransferase family 8 protein	NA	NA	NA	NA
WP_041603474.1\|1376610_1376805_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_010945003.1\|1376804_1377146_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_010945002.1\|1377157_1379011_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	4.8e-107	41.8
WP_010945001.1\|1379062_1379695_-	DUF2625 family protein	NA	NA	NA	NA
WP_010945000.1\|1379739_1380261_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA
WP_010944999.1\|1380269_1380593_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	9.8e-24	46.7
WP_010944998.1\|1380726_1381110_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.7e-51	75.8
WP_064083187.1\|1381157_1382378_-	IscS subfamily cysteine desulfurase	A0A2K9L679	Tupanvirus	4.9e-15	24.7
WP_010944996.1\|1382431_1382884_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_041603472.1\|1383311_1384649_+	membrane protein	NA	NA	NA	NA
WP_010944993.1\|1384712_1385270_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	3.8e-31	46.1
WP_010944992.1\|1385345_1388942_-	exodeoxyribonuclease V subunit beta	A7KV33	Bacillus_phage	1.0e-12	21.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage