CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011482	Helicobacter pylori strain L7, complete genome	2 crisprs	DEDDh,c2c9_V-U4,cas14j,cas14k	0	1	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011482_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011482_1

302911-303050

Orphan

Consensus_repeat	Method
AGGCTCTCTAGCGTTACTGAAGAAATCATTTCAAAAAAACAAGAAGAATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011482_1

>merge|NZ_CP011482|1|302911-303050|CRISPRCasFinder
AGGCTCTCTAGCGTTACTGAAGAAATCATTTCAAAAAAACAAGAAGAATTACAGAGCAAAGAAACCCTAGAGGGTAAGCATGATGGAGAGAGGCTCTCTAGCGTTACTGAAGAAATCATTTCAAAAAAACTAGAAGAATT

>NZ_CP011482|1|1|302911-303050|CRISPRCasFinder
AGGCTCTCTAGCGTTACTGAAGAAATCATTTCAAAAAAACAAGAAGAATT	ACAGAGCAAAGAAACCCTAGAGGGTAAGCATGATGGAGAG
AGGCTCTCTAGCGTTACTGAAGAAATCATTTCAAAAAAACTAGAAGAATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011482.1\|WP_064431946.1\|303134_304031_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP011482.1\|WP_064431947.1\|304030_305581_-\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|273193
NZ_CP011482.1\|WP_064431938.1\|296420_297359_-\|tetraacyldisaccharide-4'-kinase	unknown	unknown	gnl\|CDD\|224577
NZ_CP011482.1\|WP_064431942.1\|301256_301661_+\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|234639
NZ_CP011482.1\|WP_001052075.1\|315361_316120_+\|DUF3883-domain-containing-protein	unknown	unknown	gnl\|CDD\|379021
NZ_CP011482.1\|WP_000201853.1\|309894_310926_+\|flagellar-motor-switch-protein-FliG	unknown	unknown	gnl\|CDD\|272961
NZ_CP011482.1\|WP_064431950.1\|308173_309877_+\|flagellar-basal-body-M-ring-protein-FliF	unknown	unknown	gnl\|CDD\|129310
NZ_CP011482.1\|WP_064432820.1\|298395_299388_+\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491
NZ_CP011482.1\|WP_064431940.1\|299411_300218_+\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|225447
NZ_CP011482.1\|WP_000051424.1\|300214_300448_+\|cell-division-topological-specificity-factor-MinE	unknown	unknown	gnl\|CDD\|188120
NZ_CP011482.1\|WP_064431941.1\|300459_301260_+\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|273238
NZ_CP011482.1\|WP_080124081.1\|311685_313542_+\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|129308
NZ_CP011482.1\|WP_064431943.1\|301719_302037_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP011482.1\|WP_064431939.1\|297355_298138_-\|NAD+-synthase	unknown	unknown	gnl\|CDD\|184435
NZ_CP011482.1\|WP_064431949.1\|307461_308130_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239486
NZ_CP011482.1\|WP_064431937.1\|295945_296488_+\|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|274661
NZ_CP011482.1\|WP_080471461.1\|310912_311689_+\|flagellar-assembly-protein-FliH	unknown	unknown	gnl\|CDD\|235850
NZ_CP011482.1\|WP_080471462.1\|313538_315347_+\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_CP011482.1\|WP_064431944.1\|302222_302528_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011482.1\|WP_064431948.1\|305589_307206_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437

Protein	Function_ID	Function_description	E-value
NZ_CP011482.1\|WP_064431946.1\|303134_304031_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	1.52274e-67
NZ_CP011482.1\|WP_064431947.1\|304030_305581_-\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP011482.1\|WP_064431938.1\|296420_297359_-\|tetraacyldisaccharide-4'-kinase	gnl\|CDD\|224577	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane].	7.85134e-90
NZ_CP011482.1\|WP_001052075.1\|315361_316120_+\|DUF3883-domain-containing-protein	gnl\|CDD\|379021	pfam13020, DUF3883, Domain of unknown function (DUF3883). This is a domain is uncharacterized. It is found on restriction endonucleases.	1.01253e-16
NZ_CP011482.1\|WP_000201853.1\|309894_310926_+\|flagellar-motor-switch-protein-FliG	gnl\|CDD\|272961	TIGR00207, Flagellar_motor_switch_protein_FliG, flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family. [Cellular processes, Chemotaxis and motility].	6.16419e-166
NZ_CP011482.1\|WP_064431950.1\|308173_309877_+\|flagellar-basal-body-M-ring-protein-FliF	gnl\|CDD\|129310	TIGR00206, Flagellar_M-ring_protein, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF). Component of the M (cytoplasmic associated) ring, one of four rings (L,P,S,M) which make up the flagellar hook-basal body which is a major portion of the flagellar organelle. Although the basic structure of the flagella appears to be similar for all bacteria, additional rings and structures surrounding the basal body have been observed for some bacteria (eg Vibrio cholerae and Treponema pallidum). [Cellular processes, Chemotaxis and motility].	0
NZ_CP011482.1\|WP_064432820.1\|298395_299388_+\|ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	2.99819e-178
NZ_CP011482.1\|WP_064431940.1\|299411_300218_+\|septum-site-determining-protein-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	5.59929e-151
NZ_CP011482.1\|WP_000051424.1\|300214_300448_+\|cell-division-topological-specificity-factor-MinE	gnl\|CDD\|188120	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE. This protein is involved in the process of cell division. This protein prevents the proteins MinC and MinD to inhibit cell division at internal sites, but allows inhibiton at polar sites. This allows for correct cell division at the proper sites. [Cellular processes, Cell division].	1.26337e-25
NZ_CP011482.1\|WP_064431942.1\|301256_301661_+\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|234639	PRK00109, PRK00109, Holliday junction resolvase RuvX.	9.96915e-37
NZ_CP011482.1\|WP_080124081.1\|311685_313542_+\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|129308	TIGR00204, 1-deoxy-D-xylulose-5-phosphate_synthase, 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP). [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine, Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	0
NZ_CP011482.1\|WP_064431943.1\|301719_302037_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	2.29617e-16
NZ_CP011482.1\|WP_064431939.1\|297355_298138_-\|NAD+-synthase	gnl\|CDD\|184435	PRK13980, PRK13980, NAD synthetase; Provisional.	2.39177e-124
NZ_CP011482.1\|WP_064431949.1\|307461_308130_+\|hypothetical-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	2.50006e-13
NZ_CP011482.1\|WP_064431941.1\|300459_301260_+\|DNA-protecting-protein-DprA	gnl\|CDD\|273238	TIGR00732, Protein_smf, DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function. [Cellular processes, DNA transformation].	7.75487e-97
NZ_CP011482.1\|WP_080471461.1\|310912_311689_+\|flagellar-assembly-protein-FliH	gnl\|CDD\|235850	PRK06669, fliH, flagellar assembly protein H; Validated.	1.16759e-65
NZ_CP011482.1\|WP_080471462.1\|313538_315347_+\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_CP011482.1\|WP_064431948.1\|305589_307206_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP011482.1\|WP_064431937.1\|295945_296488_+\|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase	gnl\|CDD\|274661	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.	2.4882e-59

>NZ_CP011482.1|WP_064431944.1|302222_302528_+|hypothetical-protein
MKIMHQVRDFLDSCKQTIQKNSSEVFQKTKRAFFKGESQKIREQAVKIVEKRLKKEGMKLSDFNEEELKIMFEAEEKRLLEQIQTKHFKEVWEKGDNEQGK
>NZ_CP011482.1|WP_064431943.1|301719_302037_+|tetratricopeptide-repeat-protein
MLENFKKAIFRALCCVLIGGGLMAEPTPEELFNLGMLSYDKQDFSKARKYFEKACDLNNGGGCGALGDLYDNGEGVEKNLIKATQFYSKACKLGDQEACEALKEK
>NZ_CP011482.1|WP_064431942.1|301256_301661_+|Holliday-junction-resolvase-RuvX
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPHESYADTNARIEHFIKLLDFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYYQQVLKNH
>NZ_CP011482.1|WP_064431941.1|300459_301260_+|DNA-protecting-protein-DprA
MKSHFQYSTLENIPKAFDILKDPPKKLYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGVDIIAQENALPKTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPIKGSFLARNRLVIALSDAVIIPQADLKSGSMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEIPEMKDEFLEYCAKNPSYEEAYLKFGDKLLEYELLGKIKRINHIVVLA
>NZ_CP011482.1|WP_000051424.1|300214_300448_+|cell-division-topological-specificity-factor-MinE
MSLFDFFKNKGSATTATDRLKLILAKERTLNLPYMEEMRKEIIAVIQKYTKSSDIHFKTLDGNQSVETIEVEIILPK
>NZ_CP011482.1|WP_064431940.1|299411_300218_+|septum-site-determining-protein-MinD
MAIVVTITSGKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLRNLDMILGLENRIVYDVVDVMEKNCNLSQALITDKKTKNLSFLAASQSKDKNILDKEKVAILINALRADFDYILIDSPAGIESGFEHAILHADMALVVVTPEVSSLRDSDRVIGIIDAKSNRAKKGMEVHKHLIINRLKPELVANGEMISIEEVLKILCLPLIGIIPEDHHIISATNKGEPVIRTDCESAKAYQRITRRILGEEVEYVEFKAKKGFFSALKGIFS
>NZ_CP011482.1|WP_064432820.1|298395_299388_+|ketol-acid-reductoisomerase
MALPVYYDKDIDLGVIQSLQVGIIGYGAQGEAQALNLRDSKVKTRIGLYQGSLSVSKAKAEGFEVLEVKELVQNSDVIMALLPDELHKEVLEKEVIPFLKEGQIVGFAHGFSVHFNQVVLPKGVGAILVAPKGPGSALREEYLKNRGLYHLIAIEQESSKNNAKAVALSYAKAMGGGRMGVLETSFKEECESDLFGEQAVLCGGLEAVVRMGFETLIKAGYPEELAYFECVHEVKLVADLLHYKGVEGLRKHISNTAEFGAIKNREPMGNLLEKRMQKILKKIQNGLFAKDFLLEKSLNYPRLNTERKALKETKIEQIGEILRAPFNHKK
>NZ_CP011482.1|WP_064431939.1|297355_298138_-|NAD+-synthase
MQKDYQKLIVYLCDFLEKEAQKRGFKKVVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSLVSMPESKTDALDLCEKFSIPYTEYSIAPYDAIFSSHFKDASLTRKGNFCARLRMAFLYDYSLKNDSLVIGTSNKSERMLGYGTLFGDLACAINPIGELFKTEVYELACHLNIPKKILNKPPSADLFVGQSDEKDLGYPYSAIDPLLKDIEALFKNKPIHLETLTQLGYDEILVKNIISRIQKNAFKLELPTIAKRFNPK
>NZ_CP011482.1|WP_064431938.1|296420_297359_-|tetraacyldisaccharide-4'-kinase
MKSDKPFLERYFYDPTLLQKGLIFALYPFSLIYQGIATLKRKMAKKHDFKIPLISIGNLIAGGSGKTPFILEIAPRYQEVAVVSRGYQRDSKGLVVVSVKGNILVSQQTAGDEAYLLALNLKQASVIVSEKRELGVLKALELGAKIVFLDDGFRFNFNQFNLLLKPKVPPYYPFCLPSGLYRESIKSYKEAHLVITEDKDYQRITSISRPTKRMLLVTAIANPSRLDAFLPKEVVKKLYFRDHASFDLELLEKEFYQNNATSLLVTSKDFVKLQDCSLPLSVLDLKLEIDPKILERIDHYILSYPCNTKERL
>NZ_CP011482.1|WP_064431937.1|295945_296488_+|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase
MKKNYSYGNIQAIDFTHLNDEEKLLVLEFRNHPNTALWMYSAFISLKTHLQFIEDLKNSPNHRYFLFKEEGVYLGVGSITKINFFHKHGYLGIYKNPFLKNKGETILKALECIAFEEFQLNSLHLEVMENNFKAIAFYEKNHYELEGRLKGFIFKEKEFIDVLLYYKDKKGYNDQFSLKF
>NZ_CP011482.1|WP_064431946.1|303134_304031_-|RluA-family-pseudouridine-synthase
MPFVEEEFEILKPTKALFFVRDVLKCSLKEAQRHLDKQRLKHNQQAVRKSQMIQGVVSLIHFKPNEKQGKLVFETKDFGVFDKPAQVYTHPKGYFYHESLLDCIRSHWGKNAHPAHRLDYETSGLVLAGKTLQSVKDLKALFMQKKVKKTYLALTHGLVEKSMKIDKPILTPQNIQKDLRIRSKISPLGKPSITLVDPLSYNPFLDISLLKITPLTGRTHQIRLHLSSMGHRIVGEGLYGVADEEARGYLQLKRENNAPLLMLHAFRLGFEFKGAIYEITSPMPKRFMPFLKDLSFFY
>NZ_CP011482.1|WP_064431947.1|304030_305581_-|single-stranded-DNA-specific-exonuclease-RecJ
MKQKLKAQIKERVASIAYNEKGFPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIAIPNRFIDGYGISKKFLEKHHAPLIITVDNGINAFEAARFCKEKNYTLIITDHHCLHHDEVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLINSAGRMQDAKMALDFLSASNFQDGYSLYERLKACNLKRKMIQQQVFEEAFRHAMVGEKIIVAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSARSSSNIDLIDALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKVLPFCKTEPPLTLTLKDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVKEAIYFNTERFLKAGEKVSAIFSVELDEYSNEPKMFVKSLL
>NZ_CP011482.1|WP_064431948.1|305589_307206_-|CTP-synthase-(glutamine-hydrolyzing)
MDRAKFIFVTGGVLSSLGKGISSSSIATLLQHCNYQVSILKIDPYINIDPGTMSPLEHGEVFVTSDGAETDLDIGHYERFLNRNLTRLNNFTTGQIFSSVIEKERKGEYLGKTIQIVPHVTDEIKRRIRSAAKGLDFLIVEVGGTVGDMEGMFYLEAIRQLKLELGNEKVINVHVTLIPYIQTTNELKTKPTQHSVQELRRLGVTPQIILARSPKPLDKELKNKIALSCDVEQDSVIVATDTKSIYACPILFLQEGILTPIARRFNLNKLHPKMAAWNTLVEKIIAPKHKVKIGFVGKYLSLKESYKSLIEALIHAGAHLDTQVNIEWLDSENFNEKTNLEGVDAILVPGGFGERGIEGKICAIQRARLEKLPFLGICLGMQLAIVEFCRNVLGLKGANSTEFNQRCKYPVVYLIGDFMDQNHQKQVRTYNSPLGGTMRLGEYECEIMPNSLLEKAYKKPSIKERHRHRYEINPKYRQEWENKGLKVVGFGANHLIEAIELEDHPFFVGVQFHPEFTSRLQSPNPIILDFIKSALHKS
>NZ_CP011482.1|WP_064431949.1|307461_308130_+|hypothetical-protein
MAENSFKNVSTQPKVFFLLPVKTLFLLGGVFSAFFILIVGLVFFDYAHLMDNAIFNFVRSTPFNSSPILTLILQNTARLGSSQFVLPLSLLVGVFLSLYRRNLALGVWFVLSVVLFEALLESLKHLFAYSIQWLSHSANFPSTIALSLTLFYGLLVLLIPHLITHQTLKNVLFYSLFGLILLVALALIVLGVSFSSVLGGFCLGALGACFSIGIYLSVFQKI
>NZ_CP011482.1|WP_064431950.1|308173_309877_+|flagellar-basal-body-M-ring-protein-FliF
MDLKILLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFEGLDSSDNALILQHLQQNQIPYKVSRDDTILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKIKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSNIGPVQGLKDNKEPEKYEKSQNTTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAVSNFEFNPMAPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFIVLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIRGTLKERPDEIAMLFKLLIKDEISSDGAKG
>NZ_CP011482.1|WP_000201853.1|309894_310926_+|flagellar-motor-switch-protein-FliG
MATKLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAVLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYLGKIKPQQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMFTFEDIVKLDNFAIREILKVADKKDLSLALKTSTKDLTDKFLNNMSSRAAEQFVEEMQYLGAVKIKDVDVAQRKIIEIVQSLQEKGVIQTGEEEDVIE
>NZ_CP011482.1|WP_080471461.1|310912_311689_+|flagellar-assembly-protein-FliH
MSLNSRKNLIQKDHLNKHDIQKYKFKSMANLPPKTNPNGASLETPNPQEPLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEESKVLIENAKNDGYKIGFKEGEEKMRNELTHSVNEEKNQLLHAITALDEKMKKSEDHLMALEKELSAIAIDIAKEVILKEVEDNSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNERLQNASKIKLESNEAISKGGVMITSSNGSLDGNLMERFKTLKESVLENFKV
>NZ_CP011482.1|WP_080124081.1|311685_313542_+|1-deoxy-D-xylulose-5-phosphate-synthase
MILQNKTFDLNPNDIAGLELVCQTLRSRILEVVSANGGHLSSSLGAVELIVSMHALFDCQKNPFIFDTSHQAYAHKLLTGRFESFSTLRQFKGLSGFTKPSESAYDYFIAGHSSTSVSIGVGVAKAFCLKQALGMPIALLGDGSISAGIFYEALNELGDRKYPMIMILNDNEMSISTPIGALSKALSQLMKGPFYQSFRSKVKKILSTLPESVNYLASRFEESFKLITPGVFFEELGINYIGPINGHDLSAIIETLKLAKELKEPVLIHAQTLKGKGYKIAEGRYEKWHGVGPFDLDTGLSKKSKSAILSPTEAYSNTLLELAKKDEKIVGVTAAMPSGTGLDKLIDAYPLRFFDVAIAEQHALTSSSAMAKEGFKPFVSIYSTFLQRAYDSIVHDACISSLPIKLAIDRAGIVGEDGETHQGLLDVSYLRSIPNMVIFAPRDNETLKNAVRFANEHDSSPCAFRYPRGSFALKEGVFEPSGFVLGQSELLKKEGEILLIGYGNGVGRAHLVQLALKEKNIECALLDLRFLKPLDQNLSAIIAPYQKLYVFSDNYKLGGVASAILEFLSEQNILKPVKSFEIIDEFIMHGNTALVEKSLGLDTESLTDAILKDLGQER
>NZ_CP011482.1|WP_080471462.1|313538_315347_+|elongation-factor-4
MKSKVPMKNIRNFSIIAHIDHGKSTLADCLIAECNAISNREMKSQVMDTMDIEKERGITIKAQSVRLNYTLKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIALDNHLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSNANEVSAKARLGIKDLLEKIITTIPAPSGDFNAPLKALIYDSWFDNYLGALALVRIMDGSINTEQEILVMGTGKKHGVLGLYYPNPLKKIPTKSLECGEIGIVSLGLKSVTDIAVGDTLTDAKNPTPKPIEGFMPAKPFVFAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFGFRVGFLGLLHMEVIKERLEREFGLNLIATAPTVVYEVHLTDNSIKYIQNPSELPPENCIACIKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDKLKSCTKGYASFDYEPIENREAHLVKLDVRVAGDVVDALSIIIDKNKAYEKGRALVETMKELIPRQLFEVAIQASVGNKIIARETIKSVGKNVTAKCYGGDITRKRKLLEKQKEGKKRMKAIGKVELPQEAFLAILKID
>NZ_CP011482.1|WP_001052075.1|315361_316120_+|DUF3883-domain-containing-protein
MAKHKNYEILNLIGYALAKFDNDFIKEFGFSTKNAFFEYCVQIGLADTTGVIKNRMDLFDYFFPNKRKGWWQKGDAYIHRKLWIDSLFGNESVKGFSHIVKWFLQEQYGIKDLGITPNAYLKTRYKSMQETGLEAELYFLNHYKNIKIFSCGHLKDMRLFGDGYDFYIQTNKQAFLVEVKGIREKQGTLRLTQKEYEQAQTYSHDYVLVVVLNLSEKPHLLSIANPLKHLEFKACERKQKSILEYHLIGQIK

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Crispr_ID: NZ_CP011482_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011482_2

1523334-1523422

Orphan

Consensus_repeat	Method
AGCGCTAACAATGAAATAAACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011482_2

>merge|NZ_CP011482|2|1523334-1523422|CRISPRCasFinder
AGCGCTAACAATGAAATAAACGCTGATAAAACGCAAGCGATAGCTAACATTAACGAAGCTAAAACAAGCGCTAACAATGAAATAAACAC

>NZ_CP011482|2|2|1523334-1523422|CRISPRCasFinder
AGCGCTAACAATGAAATAAACGC	TGATAAAACGCAAGCGATAGCTAACATTAACGAAGCTAAAACA
AGCGCTAACAATGAAATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011482.1\|WP_064432747.1\|1527908_1528853_-\|pyruvate-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|239471
NZ_CP011482.1\|WP_064432745.1\|1525577_1526411_-\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|280099
NZ_CP011482.1\|WP_001053815.1\|1512402_1512873_-\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	unknown	unknown	gnl\|CDD\|273123
NZ_CP011482.1\|WP_024773543.1\|1518103_1518775_+\|thioredoxin-fold-domain-containing-protein	unknown	unknown	gnl\|CDD\|225054
NZ_CP011482.1\|WP_000486478.1\|1530506_1531067_-\|pyruvate-flavodoxin-oxidoreductase-subunit-gamma	unknown	unknown	gnl\|CDD\|180284
NZ_CP011482.1\|WP_064432738.1\|1511029_1512397_-\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	unknown	unknown	gnl\|CDD\|236269
NZ_CP011482.1\|WP_064432882.1\|1523590_1525567_+\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_CP011482.1\|WP_064432749.1\|1532013_1533321_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011482.1\|WP_000124332.1\|1528865_1530089_-\|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181999
NZ_CP011482.1\|WP_000523111.1\|1513003_1513570_+\|dCTP-deaminase	unknown	unknown	gnl\|CDD\|234753
NZ_CP011482.1\|WP_064432740.1\|1515854_1516535_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|272873
NZ_CP011482.1\|WP_064432739.1\|1513728_1515831_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|280099
NZ_CP011482.1\|WP_064432743.1\|1518784_1521595_+\|cytochrome-C-biogenesis-protein	unknown	unknown	gnl\|CDD\|274447
NZ_CP011482.1\|WP_064432748.1\|1531335_1532007_+\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|280099
NZ_CP011482.1\|WP_000656168.1\|1530098_1530491_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|236596
NZ_CP011482.1\|WP_064432750.1\|1533507_1534704_+\|glycosyltransferase-family-8-protein	unknown	unknown	gnl\|CDD\|224359
NZ_CP011482.1\|WP_064432741.1\|1516535_1516967_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011482.1\|WP_064432742.1\|1517022_1518030_+\|ferrochelatase	unknown	unknown	gnl\|CDD\|272909
NZ_CP011482.1\|WP_080471549.1\|1522472_1522865_+\|DUF3519-domain-containing-protein	unknown	unknown	gnl\|CDD\|376228
NZ_CP011482.1\|WP_064432746.1\|1526476_1527799_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|181437

Protein	Function_ID	Function_description	E-value
NZ_CP011482.1\|WP_064432747.1\|1527908_1528853_-\|pyruvate-ferredoxin-oxidoreductase	gnl\|CDD\|239471	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.	8.4754e-136
NZ_CP011482.1\|WP_064432745.1\|1525577_1526411_-\|outer-membrane-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	7.48221e-34
NZ_CP011482.1\|WP_001053815.1\|1512402_1512873_-\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	gnl\|CDD\|273123	TIGR00531, BCCP, acetyl-CoA carboxylase, biotin carboxyl carrier protein. This model is designed to identify biotin carboxyl carrier protein as a peptide of acetyl-CoA carboxylase. Scoring below the trusted cutoff is a related protein encoded in a region associated with polyketide synthesis in the prokaryote Saccharopolyspora hirsuta, and a reported chloroplast-encoded biotin carboxyl carrier protein that may be highly derived from the last common ancestral sequence. Scoring below the noise cutoff are biotin carboxyl carrier domains of other enzymes such as pyruvate carboxylase.The gene name is accB or fabE. [Fatty acid and phospholipid metabolism, Biosynthesis].	1.30478e-69
NZ_CP011482.1\|WP_024773543.1\|1518103_1518775_+\|thioredoxin-fold-domain-containing-protein	gnl\|CDD\|225054	COG2143, COG2143, Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones].	4.5611e-66
NZ_CP011482.1\|WP_000486478.1\|1530506_1531067_-\|pyruvate-flavodoxin-oxidoreductase-subunit-gamma	gnl\|CDD\|180284	PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated.	8.03753e-128
NZ_CP011482.1\|WP_064432738.1\|1511029_1512397_-\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	gnl\|CDD\|236269	PRK08462, PRK08462, acetyl-CoA carboxylase biotin carboxylase subunit.	0
NZ_CP011482.1\|WP_064432882.1\|1523590_1525567_+\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP011482.1\|WP_000124332.1\|1528865_1530089_-\|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha	gnl\|CDD\|181999	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha.	0
NZ_CP011482.1\|WP_000523111.1\|1513003_1513570_+\|dCTP-deaminase	gnl\|CDD\|234753	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed.	5.1591e-93
NZ_CP011482.1\|WP_064432740.1\|1515854_1516535_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|272873	TIGR00046, Ribosomal_RNA_small_subunit_methyltransferase_E, RNA methyltransferase, RsmE family. Members of this protein family, previously called conserved hypothetical protein TIGR00046, include the YggJ protein of E. coli, which has now been shown to methylate U1498 in 16S rRNA. [Protein synthesis, tRNA and rRNA base modification].	2.52438e-78
NZ_CP011482.1\|WP_064432739.1\|1513728_1515831_+\|hypothetical-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	2.44987e-09
NZ_CP011482.1\|WP_064432743.1\|1518784_1521595_+\|cytochrome-C-biogenesis-protein	gnl\|CDD\|274447	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction. [Energy metabolism, Electron transport, Protein fate, Protein modification and repair].	3.23298e-56
NZ_CP011482.1\|WP_064432748.1\|1531335_1532007_+\|outer-membrane-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	1.3065e-35
NZ_CP011482.1\|WP_000656168.1\|1530098_1530491_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|236596	PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed.	1.31619e-83
NZ_CP011482.1\|WP_064432750.1\|1533507_1534704_+\|glycosyltransferase-family-8-protein	gnl\|CDD\|224359	COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane].	3.51819e-77
NZ_CP011482.1\|WP_064432746.1\|1526476_1527799_-\|adenylosuccinate-lyase	gnl\|CDD\|181437	PRK08470, PRK08470, adenylosuccinate lyase; Provisional.	0
NZ_CP011482.1\|WP_064432742.1\|1517022_1518030_+\|ferrochelatase	gnl\|CDD\|272909	TIGR00109, Ferrochelatase_mitochondrial, ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	3.37356e-150
NZ_CP011482.1\|WP_080471549.1\|1522472_1522865_+\|DUF3519-domain-containing-protein	gnl\|CDD\|376228	pfam18809, PBECR1, phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease1. A predicted endoRNase of the Barnase-EndoU-ColicinE5/D-RelE like nuclease fold found in polyvalent proteins of phages and conjugative elements. The predicted active site contains a conserved histidine and threonine residues.	4.37279e-11

>NZ_CP011482.1|WP_080471549.1|1522472_1522865_+|DUF3519-domain-containing-protein
MDLVWGNKDYGLEHILKRREKQAKNKGLNEQQAKEYAMSVVKTIPEVIEKGSKGTDHLGRVFVDYGNIRVGLNNTWNNKDLENHWVISSYEIYNSEGEPPSLLIAQLQGVGLGTPKLTEPNPTTKKLNKE
>NZ_CP011482.1|WP_064432743.1|1518784_1521595_+|cytochrome-C-biogenesis-protein
MKNLKSLLSFLLASFWVAIPLIALYALACAIATFIENDYGTSASKAIVYNTPWFNFLHAYLLVVLIGTFINSKALERKRYASLFFHSSLILIILGAAITRFFGTEGLMHVRENSVQSSFESADTYLNITLNDTTKLSLKTPFTFYYSKRLKPIHATLDHKPLILEPLEIYKQNAIKKDDAAILVLKATYNGVSHKFNLIKTNRNEGIEESEMFKDDKLSLSFGSAYIELPFQIKLKRFELERYAGSMSPSSYASEVEVLKLDNTLIKPYRIFMNHVLDYEGYRFFQSSYDTDEKGTILSVNKDPGKIPTYLGYAMLILGALWLLLDKNGRFLKLSRFLKSQQVASFLLALILISPFTPSFASETPIDMHGGKSAQIERQNVENPANKENSKSVILERLKHLREYSKDHLKAFQRLQVQDFDGRIKPLDTISIEYIHKILKKDDFQGLNAMQTLLGIMFFPNDWRSIKMIYTSSKALRKLIGTPLDESRIAFRDAFDSRGYKLKNLVEEVNQKSPNARNELDKDVLKVDERINLVYTLFSAQFLRIFPSDKTTAWLSPIEAINSPNKEISSVATAFLKNIFNGFDDALKTNQWDKVEKTLKDLSIYQQEHAKNLYLPSSKVDSEIFLNHTNFFNSLTLPYILLGLLLFIVVISSLVKNTIPNIWPTKILYIAILLCAIAHSMGLVLRWYVSGHSPWSNAYESMLYIAWASVIAGFILRSKLALSASSFLAGIALFVAHLGFMDPQIGHLVPVLKSYWLNIHVSIITASYGFLGLCFVLGILSLVLFILRKQGRFNLDKTILSISAINEMSMILGLFMLTAGNFLGGVWANESWGRYWGWDPKETWALISICVYALILHLRFLGSQNWPFILASSSVLGFYSVLMTYFGVNYYLSGLHSYAAGDPLPIPTFLYFLVAIPFALVILAYFKRHLSLPKLV
>NZ_CP011482.1|WP_024773543.1|1518103_1518775_+|thioredoxin-fold-domain-containing-protein
MFSLSYVSKKFLSVLLLISLFLSACKSSNKDKLDENLLSSGSQSSKELNDERDNIDKKSYAGLEDIFSDNKSISPNDKYMLLVFGRNGCSYCERFKKDLKNVKELHNYVKEHFSAYYVNISYSKEHDFKVGDKDKNDEKEIKMSTEELAQIYAVQSTPTIVLSDKTGKTIYELPGYMPSTQFLAVLEFIGDGKYQDTKNDEDLTKKLKAYIKYKTNLSKSKSN
>NZ_CP011482.1|WP_064432742.1|1517022_1518030_+|ferrochelatase
MNLINEKLNNLENNAAKSTKEAVVLLNMGGPNSLYEVGVFLKNMFDDPFILTIKNNFMRKMVGKMIVNSRIEKSKKIYEKLGGKSPLTPITFALTERLNELDPSRFYTYAMRYTPPYASMVLQDLALKEVESVVFFSMYPQYSSTTTLSSFNDAFNALKSLETFRPKVRLIERFYASKKLNEIILNTILSALNNRKSQDFVLIFSVHGLPKSVIDAGDTYQQECEHHVSLLKELMQQKNIPFKEVLLSYQSKLGPMKWLEPSTEELIEKHRKSHIIIYPLAFTIDNSETLYELDMQYRLMAERLAVKEYLVCPCLNDSIEFAKFIIELVNNLKSE
>NZ_CP011482.1|WP_064432741.1|1516535_1516967_-|hypothetical-protein
MLEMSLQALNTQDSSVMAQSLLIHAFFAALLALAFMINLYTLFKEKNLIQLNKKIYLVMPAIYILLSIALLSGIFIWAMQQFEFSFRAVVMLLGLLLMLIAEIKRHKSVKFAITKKERMEAYIKKAKILYFLETILIVVLMGL
>NZ_CP011482.1|WP_064432740.1|1515854_1516535_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MRFVYHPLAKEPVLKIEGESYTHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLRLVGAQALEVMANKKTHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSSKLERFQKILIHSCEQCGRSALMELEVFSNTKEMLNAYPKASVLDFKGKTLPASVDFEKGVIIGPEGGFSGQEREYFKEREIYRIPLDMVLKSESACVFVASVAQV
>NZ_CP011482.1|WP_064432739.1|1513728_1515831_+|hypothetical-protein
MLRFVSKTICLSLIGLFNPLEAFQKHQKDGFFIEAGFETGLLEGVQNKEQTITTQKIQKNPLTHSQIKEQPKEQNKSDTATPQSVYGRYYILQSTILKNATALFTTDNIENGLTFYSQNPVYANMVNGSVTIQNFLPYNLNNIELSFKDAQGKVINLGVIETIPKDSQIILPASLFNDSEFEQADSFNYQQLQATATQFSDANTQSLFEKISKITTNVTMSYENADTNNFKGNCNDCVSDFTPQTAEELTNLMLDMIAVFDSKSWEEAVLNAPFQFSNSPSECGSDFPKCVNPFNNGRVAHIYEHYVLTPQSVIDAFRRAINLEVNIMKSGFLGLGYELDDNDGNLGIAASALNPEKLFGKNLDKIDLNELRDIIHEFSHTKGYTHNGNMTYQRVRLCQEGNGPEVRCEGGKEVEKNGKEELEFSNGHEVRDHDGYDYDVCSRFGGKNQSAFPSHYPNSIYTNCTQVPAGLIGVTTAVWQQLINQNALPINFANLSSQANYLDASLNAQNFATSMVSAIAQNFSTTSTTTYRSSSKNFRSPILGVNVKIGYQHYFNDYIGLAYYGIIKYNYAQANDEKIQQLSYGGGMDVLFDFITTYTSKKQDNPTKKVFASSFGVFGGLRGLYNSYYVFNQVKGSGNLDIVTGFNYRYKHSKYSVGISVPLIQSDIKIASNNGIYADSVVLNEGGSHFKVFFNYGWIF
>NZ_CP011482.1|WP_000523111.1|1513003_1513570_+|dCTP-deaminase
MGLKADSWIKKMSLEHGMISPFCEKQVGKNVISYGLSSYGYDIRVGSEFMLFDNKNALIDPKNFDPNNATKIDASQEGFFILPANAFALAHTIEYFKMPKDTLAICLGKSTYARCGIIVNVTPFEPEFEGYITIEISNTTNLPAKVYANEGIAQVVFLQGDEVCEQSYKDRGGKYQGQVGITLPKILK
>NZ_CP011482.1|WP_001053815.1|1512402_1512873_-|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein
MNLSEIEELIKEFKASDLGHLKLKHEHFELVLDKESAYAKKSALNPAHSPAPIMVEASMPSVQTPVPMVCTPIVDKKEDFVLSPMVGTFYHAPSPGAEPYVKAGDTLKKGQIVGIVEAMKIMNEIEVEYPCKVVSVEVGDAQPVEYGTKLIKVEKL
>NZ_CP011482.1|WP_064432738.1|1511029_1512397_-|acetyl-CoA-carboxylase-biotin-carboxylase-subunit
MNKENKKVEKKELSRILIANRGEIALRAIQTIQEMGKESIAIYSIADKDAHYLNTASAKVCIGGAKSSESYLNIPAIISAAELFEADAIFPGYGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVIEGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSRLKNLYLAAETEALSAFGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEEGVRKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTRLQVEHTISEMVSGLNLIEWMIKIAQGEELPKQESFSLKGHAIECRITAEDPKKFYPSPGKITEWIAPGGVNVRLDSHAHAHYVVPTHYDSMIGKLIVWGENRERAIAKMKRALKEFKVEGIKTTIPFHLEMLENADFRQAKIHTKYLEENF
>NZ_CP011482.1|WP_064432882.1|1523590_1525567_+|excinuclease-ABC-subunit-B
MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLRLSTATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVMLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISTTGVCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKENVAEQIIRPTGLLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMHSEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRAARNANGKVLLYAKKTTQSMQKAFEITSYRRAKQEEFNKLHNITPKTVTRALEEELKLRDDEIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKLRTL
>NZ_CP011482.1|WP_064432745.1|1525577_1526411_-|outer-membrane-protein
MKRALCLILGLFCTLNAKGFKDVLTKGSYTFFNKKVVSPIKRYADRSAFYLGLGYQLGSIQHNSSNLNLFQQFNKSQIVFSDGLSPVFKNSYVSNGLGVQVGYKWVGKHEETKWFGFRWGLFYDLSASLYGAQESQSIIISTYGTYMDLLFNAYNGDKFFAGFNLGIAFAGVHDKVSDALLYQVLLLDTFGGKVDSNGFQFLVDLGVRLGNKCNQFGFGIKVPTYYFNHYYSMNNISNNSKDVLKVLRFLEYGINSLLYQVDFRRNYSVYFNYTYSF
>NZ_CP011482.1|WP_064432746.1|1526476_1527799_-|adenylosuccinate-lyase
MLERYANEEMKALWNEQTKFETYLEVEKAVVRAWNKLGQIQDSDCEKICAKAAFNLERIKEIEKTTKHDLIAFTTCVAESLGEESRFFHYGITSSDCIDTAMALLMTKSLKLIQKGVKNLYETLKNRALEHKDTLMVGRSHGVFGEPITFGLVLALFADEIKRHLKALDLTMEFISVGAISGAMGNFAHAPLELEELACQFLGLKTANISNQVIQRDRYARLACDLALLASSCEKIAVNIRHLQRSEVYEVQEAFSTGQKGSSAMPHKRNPILSENITGLCRVIRSFTTPMLENVALWHERDMSHSSVERFALPDLFVTSDFMLSRLNSVIENLVVYPKNMLKNLALSGGLVFSQRVLLELPKKGLSREESYSIVQENAMKIWEVLQQGAFKNADENLFLNALLNNERLKQYLSEDEIKACFDYRYYTKNVGAIFKRVFE
>NZ_CP011482.1|WP_064432747.1|1527908_1528853_-|pyruvate-ferredoxin-oxidoreductase
MVKEVKTLKGFSQSAEKFQGSHLLCPGCGHGIIVREVLNAVDGPIVLGNSTGCLEVCSAVYPHTSWDVPWIHIGFENGSTAISGVEAMYKALTNKGRYQGQKPKFVAFGGDGASYDIGLQFISGCMERGHDMTYICLDNENYANTGGQRSGSTPLGASTSTTPAGSVSFGKKEKKKDIVNIMASHGVPYVAQLSPNKWKDMNKKIKTALDTEGPCFINALSPCTTEWKFESNKTIELADMAVDSLMFPLFEIFNGRELKITYRPRNIIPVRDYLGAQKRFKHLFKKENEHIIEELQKDVNEHWEYLQRREEAKV
>NZ_CP011482.1|WP_000124332.1|1528865_1530089_-|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha
MARSIELQEIEVWDGNTASSNALRQAQIDVIAAYPITPSTPIVQNYGSFKDNGYIDGEFVLVESEHAAMSACVGAAAAGGRVSTATSSQGLALMVEVLYQASGMRLPIVLNLVNRALAAPLNIHGDHSDMYLSRDSGWISLCTCNPQEAYDFTLMAFRIAEHQKVRVPTIVNQDGFLCSHTVQNVRPLSDAVAYQFVGEYQTKHSLLDFDKPVSYGAQAEEEWHYEHKAQLHHAIMSASSVIEEVFNDFAKLTGRQYHLTKTFQLEDAEIAIFALGTTYESAIVAAKEMRKKGIKAGVATIHSLRPFPYERLGQDLKNLKALAILDKSSPAGAMGAMFNEVTSAVYQTQGTKHPVVSNYIYGLGERDMTIAHLCEIFEEINEDALKGTLTHPTQQFVGLRGPKMSFF
>NZ_CP011482.1|WP_000656168.1|1530098_1530491_-|4Fe-4S-dicluster-domain-containing-protein
MKDWNEFEMGAVLFPFEKNAQSEMEKHNDERHYTEQSYFTTSVAHWRVAKPVHNNNICINCFNCWVYCPDAAILSREGKLKGVDYSHCKGCGVCVDVCPTNPKSLWMFEEQIDPASALTQWPQKQEKKKS
>NZ_CP011482.1|WP_000486478.1|1530506_1531067_-|pyruvate-flavodoxin-oxidoreductase-subunit-gamma
MFQIRWHARAGQGAITGAKGLADVISKTGKEVQAFSSYGSAKRGAAMMAYNRIDDEPILNHERFMQPDYVLVIDPGLVFIENIFANEKEDTTYIITSYLNKEELFEKKPELKTRKVFLVDCLKISMETLKRPIPNTPMLGALMKVSGMLEIGAFKEAFKKVLGKKLTQEVIDANMLAIQRAYEEVQ
>NZ_CP011482.1|WP_064432748.1|1531335_1532007_+|outer-membrane-protein
MNETNKTMVKILMGMALLSSLQAIEVELDEKSKKPKLADRNTFYLGVGYQLSAINTSFSTESVDKSYFMTGNGFGVVLGGKFVAKTQAVEHVGFRYGLFYDQTFSSHKSYISTYGLEFSGLWDAFNSPKMFLGLEFGVGIAGATYMPGGAMHGVIAQNLGKENSLFQLLVKVGFRFGFFHNEITFGLKFPFIPNKKTEIVDGLSATTLWHRLPVAYFNYIYNF
>NZ_CP011482.1|WP_064432749.1|1532013_1533321_-|hypothetical-protein
MIFLKKSLYALLFSGFLIPPLIKAASFVYDLKFMSFNFNLVAPNNNPYWNSLTKMQARLMPQIGVQLDKRQALMFGAWFIQNLHTHYSYFPYSWGVTMYYQYIGKNLRFFLGIVPRSYQIGHYPLSAFKKLFWFIDPTFRGGAFQFKPAYDPNRWWNGWFEGVVDWYGGRNWNNQPKKKNYDFDQFLYFVSSEFQFLKGYLGLGGQLVIFHNANSHSMGDNYPYGGNSYLKPGDATPQWPNGYPYFSQKNNPQGGEIGKYSNPTILDRVYYHAYLKADFKNLMPYMDNIFMTFGTQSSQTHYCVRYASECKNAQFYNSFGGEFYAQAQYKGFGIFNRYYFSNKPQMHFYATYGQSLYTGLPWYRAPNFDMIGLYYVYKNKWVSVRADAFFNFLGGGDGYHLYGKGGKWITTYQQFLTLTIDTKELIDFVKSKTSK
>NZ_CP011482.1|WP_064432750.1|1533507_1534704_+|glycosyltransferase-family-8-protein
MTSASSHSFKEQDFHIPIAFAFDKNYLIPAGACIYSLLESIAKANKKIRYTLHALVVGLNEEDKAKLNQIAEPFKEFAALEVRDIEPFLDTIPNPFDEDFTKRFSKMVLVKYFLADLFPKYSKMVWSDVDVIFCNEFSADFLNIKEDDENYFYGVLEVNKHHMMEGFLFCNLDYQRKKNFTLRMHDLLKGNEAKEELDFTKWCWPNMKALGIEYCVFPLYYTIKDFSNVYLNENYKKTILEALKNPIIIHYDAWWGAVKPWDYPFGLKADLWLNALSKTPFMSDYTKKMHTNESFYTTKMAQQHYFSSIKSSKEILFEAPYLFFKSYLFVVFKERKIHSRVFELTGGLVKKIFNKLIYFVFFMPKALAKRVVSKILRVLGLHGIVKKILIQLKLLKKS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011482_2	2.1\|1523357\|43\|NZ_CP011482\|CRISPRCasFinder	1523357-1523399	43	KX119186	Helicobacter phage SwC520G putative crystallin beta/gamma motif-containing protein and tail fiber protein genes, partial cds	2086-2128	4	0.907
NZ_CP011482_2	2.1\|1523357\|43\|NZ_CP011482\|CRISPRCasFinder	1523357-1523399	43	KX119188	Helicobacter phage FrB41M, complete genome	12701-12743	5	0.884
NZ_CP011482_2	2.1\|1523357\|43\|NZ_CP011482\|CRISPRCasFinder	1523357-1523399	43	KX119188	Helicobacter phage FrB41M, complete genome	12767-12809	5	0.884
NZ_CP011482_2	2.1\|1523357\|43\|NZ_CP011482\|CRISPRCasFinder	1523357-1523399	43	KX119204	Helicobacter phage Sw577G, complete genome	13506-13548	5	0.884
NZ_CP011482_2	2.1\|1523357\|43\|NZ_CP011482\|CRISPRCasFinder	1523357-1523399	43	KX119178	Helicobacter phage Pt5303G genomic sequence	12800-12842	5	0.884
NZ_CP011482_2	2.1\|1523357\|43\|NZ_CP011482\|CRISPRCasFinder	1523357-1523399	43	KX119178	Helicobacter phage Pt5303G genomic sequence	12734-12776	6	0.86
NZ_CP011482_2	2.1\|1523357\|43\|NZ_CP011482\|CRISPRCasFinder	1523357-1523399	43	KX119192	Helicobacter phage Pt1918U, complete genome	12800-12842	7	0.837
NZ_CP011482_2	2.1\|1523357\|43\|NZ_CP011482\|CRISPRCasFinder	1523357-1523399	43	KX119191	Helicobacter phage Pt4497U, complete genome	13499-13541	7	0.837
NZ_CP011482_2	2.1\|1523357\|43\|NZ_CP011482\|CRISPRCasFinder	1523357-1523399	43	KX119204	Helicobacter phage Sw577G, complete genome	13638-13680	8	0.814
NZ_CP011482_2	2.1\|1523357\|43\|NZ_CP011482\|CRISPRCasFinder	1523357-1523399	43	KX119199	Helicobacter phage Pt5771G, complete genome	13916-13958	9	0.791

1. spacer 2.1|1523357|43|NZ_CP011482|CRISPRCasFinder matches to KX119186 (Helicobacter phage SwC520G putative crystallin beta/gamma motif-containing protein and tail fiber protein genes, partial cds) position: , mismatch: 4, identity: 0.907

tgataaaacgcaagcgatagctaacattaacgaagctaaaaca	CRISPR spacer
gaataaaacgcaagcgataactaacattaacgaagcgaaaaca	Protospacer
 .*****************.**************** ******

2. spacer 2.1|1523357|43|NZ_CP011482|CRISPRCasFinder matches to KX119188 (Helicobacter phage FrB41M, complete genome) position: , mismatch: 5, identity: 0.884

tgataaaacgcaagcgatagctaacattaacgaagctaaaaca	CRISPR spacer
tgataaaacgcaagcgataactaacattaacgaagcaaaagtt	Protospacer
*******************.**************** ***..

3. spacer 2.1|1523357|43|NZ_CP011482|CRISPRCasFinder matches to KX119188 (Helicobacter phage FrB41M, complete genome) position: , mismatch: 5, identity: 0.884

tgataaaacgcaagcgatagctaacattaacgaagctaaaaca	CRISPR spacer
tgataaaacgcaagcgataactaacattaacgaagcaaaagtt	Protospacer
*******************.**************** ***..

4. spacer 2.1|1523357|43|NZ_CP011482|CRISPRCasFinder matches to KX119204 (Helicobacter phage Sw577G, complete genome) position: , mismatch: 5, identity: 0.884

tgataaaacgcaagcgatagctaacattaacgaagctaaaaca	CRISPR spacer
gaataaaacgcaagcgataactaccattaacgaagctaaaacg	Protospacer
 .*****************.*** ******************.

5. spacer 2.1|1523357|43|NZ_CP011482|CRISPRCasFinder matches to KX119178 (Helicobacter phage Pt5303G genomic sequence) position: , mismatch: 5, identity: 0.884

tgataaaacgcaagcgatagctaacattaacgaagctaaaaca	CRISPR spacer
aaacaaaacgcaagcgataactaacattaacgaagctaaaacg	Protospacer
 .*.***************.**********************.

6. spacer 2.1|1523357|43|NZ_CP011482|CRISPRCasFinder matches to KX119178 (Helicobacter phage Pt5303G genomic sequence) position: , mismatch: 6, identity: 0.86

tgataaaacgcaagcgatagctaacattaacgaagctaaaaca	CRISPR spacer
aaacaaaacgcaagcgataactaacattaacgaagctaaagaa	Protospacer
 .*.***************.********************. *

7. spacer 2.1|1523357|43|NZ_CP011482|CRISPRCasFinder matches to KX119192 (Helicobacter phage Pt1918U, complete genome) position: , mismatch: 7, identity: 0.837

tgataaaacgcaagcgatagctaacattaacgaagctaaaaca	CRISPR spacer
caataaaacgcaagcgataactaacattaacgaagcaaaagtt	Protospacer
..*****************.**************** ***..

8. spacer 2.1|1523357|43|NZ_CP011482|CRISPRCasFinder matches to KX119191 (Helicobacter phage Pt4497U, complete genome) position: , mismatch: 7, identity: 0.837

tgataaaacgcaagcgatagctaacattaacgaagctaaaaca	CRISPR spacer
gaacaaaacgcaagcgataaataacattaacgaagctaaagaa	Protospacer
 .*.***************. *******************. *

9. spacer 2.1|1523357|43|NZ_CP011482|CRISPRCasFinder matches to KX119204 (Helicobacter phage Sw577G, complete genome) position: , mismatch: 8, identity: 0.814

tgataaaacgcaagcgatagctaacattaacgaagctaaaaca	CRISPR spacer
aaaacaaacgcaagcgataactaacattaacgaagctaaagag	Protospacer
 .*  **************.********************. .

10. spacer 2.1|1523357|43|NZ_CP011482|CRISPRCasFinder matches to KX119199 (Helicobacter phage Pt5771G, complete genome) position: , mismatch: 9, identity: 0.791

tgataaaacgcaagcgatagctaacattaacgaagctaaaaca	CRISPR spacer
gaaccaaacgcaagcgataactaacattaacgaagccaaagat	Protospacer
 .*. **************.****************.***.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1112714 : 1122580

Helicobacter_phage(80.0%)

integrase

attL 1112657:1112671|attR 1118430:1118444

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1112657:1112671	attL	NA	NA	NA	NA
WP_064432471.1\|1112714_1113128_-	nucleoside-diphosphate kinase	L7Y4C4	Megavirus	2.1e-23	45.0
WP_000655170.1\|1113194_1114352_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	9.0e-120	56.6
WP_064432473.1\|1114649_1114964_+	hypothetical protein	A0A1S5RGX4	Helicobacter_phage	7.5e-21	62.5
WP_064432474.1\|1115072_1116221_+\|integrase	site-specific integrase	A0A1S5RGU2	Helicobacter_phage	2.1e-185	88.0
WP_064432475.1\|1116217_1116433_+	hypothetical protein	A0A1S5RF14	Helicobacter_phage	2.3e-21	78.6
WP_064432476.1\|1116434_1116743_+	hypothetical protein	I6P4U5	Helicobacter_phage	2.5e-45	88.2
WP_064432477.1\|1116739_1117714_+	HTH domain-containing protein	I6P4A6	Helicobacter_phage	2.3e-153	85.1
WP_064432478.1\|1117904_1118171_+	hypothetical protein	I6P597	Helicobacter_phage	1.5e-33	89.8
WP_064432479.1\|1118182_1119352_+	helicase DnaB	A0A1S5RFA1	Helicobacter_phage	4.9e-190	86.7
1118430:1118444	attR	NA	NA	NA	NA
WP_064432480.1\|1120921_1122580_+	hypothetical protein	A0A1S5RFY8	Helicobacter_phage	5.1e-108	82.8

DBSCAN-SWA_2

1429837 : 1440740

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080471543.1\|1429837_1431886_+	DNA helicase UvrD	A7KV33	Bacillus_phage	5.9e-90	34.4
WP_064432674.1\|1431882_1432539_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA
WP_064432675.1\|1432548_1433112_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_001169261.1\|1433111_1433585_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	4.8e-27	44.2
WP_064432676.1\|1433586_1434162_+	dTMP kinase	Q2XUX0	environmental_halophage	1.0e-10	29.6
WP_064432677.1\|1434149_1434725_+	ComF family protein	NA	NA	NA	NA
WP_064432678.1\|1434757_1436797_+	N-6 DNA methylase	A0A2H4JBT5	uncultured_Caudovirales_phage	3.2e-213	58.6
WP_064432679.1\|1436793_1437999_+	restriction endonuclease	A0A1W6JNN3	Staphylococcus_phage	2.2e-12	23.9
WP_064432680.1\|1438064_1440740_+	DNA polymerase I	A0A142F1Q9	Bacillus_phage	8.1e-47	28.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011482

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection