CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011484	Helicobacter pylori strain CC33C, complete genome	3 crisprs	cas2,DEDDh,csx1,cas14j	0	2	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011484_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011484_1

457140-457244

Orphan

Consensus_repeat	Method
AAAAAAAGGATTTTAAGGCGTTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011484_1

>merge|NZ_CP011484|1|457140-457244|CRISPRCasFinder
AAAAAAAGGATTTTAAGGCGTTCAGGTTTTTAGAATTCAAGCAGCGTAATGTTTTTATCGCTCTAGTGCCTTGGTCTTATAAAAATAAGGATTTTAAGGCGTTCA

>NZ_CP011484|1|1|457140-457244|CRISPRCasFinder
AAAAAAAGGATTTTAAGGCGTTCA	GGTTTTTAGAATTCAAGCAGCGTAATGTTTTTATCGCTCTAGTGCCTTGGTCTTATA
AAAATAAGGATTTTAAGGCGTTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011484.1\|WP_080471230.1\|457854_458505_+\|septum-site-determining-protein-MinC	unknown	unknown	gnl\|CDD\|234791
NZ_CP011484.1\|WP_080471313.1\|459461_459908_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224135
NZ_CP011484.1\|WP_001940406.1\|455644_456586_+\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|280099
NZ_CP011484.1\|WP_064436378.1\|449273_449810_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|367115
NZ_CP011484.1\|WP_000461196.1\|450844_451594_-\|twin-arginine-translocase-subunit-TatC	unknown	unknown	gnl\|CDD\|223876
NZ_CP011484.1\|WP_000991163.1\|463929_464265_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|129191
NZ_CP011484.1\|WP_000062688.1\|453117_453930_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|272969
NZ_CP011484.1\|WP_064436381.1\|454790_455633_+\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|280099
NZ_CP011484.1\|WP_001876931.1\|454078_454801_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011484.1\|WP_064436379.1\|449806_450844_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|272912
NZ_CP011484.1\|WP_064436384.1\|458501_459389_+\|UDP-3-O-[3-hydroxymyristoyl]-N-acetylglucosamine-deacetylase	unknown	unknown	gnl\|CDD\|273014
NZ_CP011484.1\|WP_064436387.1\|464858_465971_+\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277331
NZ_CP011484.1\|WP_001264984.1\|466326_466998_+\|response-regulator-like-transcription-factor-HsrA	unknown	unknown	gnl\|CDD\|223816
NZ_CP011484.1\|WP_064436386.1\|461080_463930_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_CP011484.1\|WP_000166660.1\|464257_464698_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|223850
NZ_CP011484.1\|WP_000261683.1\|459961_460843_+\|homoserine-kinase	unknown	unknown	gnl\|CDD\|129295
NZ_CP011484.1\|WP_001925758.1\|451586_452039_-\|Sec-independent-protein-translocase-subunit-TatB	unknown	unknown	gnl\|CDD\|235219
NZ_CP011484.1\|WP_080012955.1\|460814_461084_+\|DUF448-domain-containing-protein	unknown	unknown	gnl\|CDD\|225350
NZ_CP011484.1\|WP_064436380.1\|452106_453117_-\|Holliday-junction-branch-migration-DNA-helicase-RuvB	unknown	unknown	gnl\|CDD\|234619
NZ_CP011484.1\|WP_080471228.1\|449037_449331_-\|prokaryotic-metallothionein-family-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP011484.1\|WP_080471230.1\|457854_458505_+\|septum-site-determining-protein-MinC	gnl\|CDD\|234791	PRK00556, minC, septum formation inhibitor; Reviewed.	3.70667e-93
NZ_CP011484.1\|WP_080471313.1\|459461_459908_+\|hypothetical-protein	gnl\|CDD\|224135	COG1214, COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones].	5.85849e-19
NZ_CP011484.1\|WP_001940406.1\|455644_456586_+\|outer-membrane-beta-barrel-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	6.61306e-27
NZ_CP011484.1\|WP_064436378.1\|449273_449810_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|367115	pfam02527, GidB, rRNA small subunit methyltransferase G. This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA.	5.81501e-66
NZ_CP011484.1\|WP_000461196.1\|450844_451594_-\|twin-arginine-translocase-subunit-TatC	gnl\|CDD\|223876	COG0805, TatC, Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion].	1.21441e-80
NZ_CP011484.1\|WP_000991163.1\|463929_464265_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|129191	TIGR00082, Ribosome-binding_factor_A, ribosome-binding factor A. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'terminal helix region of 16S rRNA. Mutants lacking rbfA have a cold-sensitive phenotype. [Transcription, RNA processing].	3.48152e-38
NZ_CP011484.1\|WP_000062688.1\|453117_453930_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|272969	TIGR00222, 3-methyl-2-oxobutanoate_hydroxymethyltransferase, 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A].	1.13542e-158
NZ_CP011484.1\|WP_064436381.1\|454790_455633_+\|outer-membrane-beta-barrel-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	3.58589e-10
NZ_CP011484.1\|WP_001264984.1\|466326_466998_+\|response-regulator-like-transcription-factor-HsrA	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	7.85819e-52
NZ_CP011484.1\|WP_064436379.1\|449806_450844_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|272912	TIGR00113, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase. This model describes the enzyme for S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA). QueA synthesizes Queuosine which is usually in the first position of the anticodon of tRNAs specific for asparagine, aspartate, histidine, and tyrosine. [Protein synthesis, tRNA and rRNA base modification].	9.47999e-167
NZ_CP011484.1\|WP_064436384.1\|458501_459389_+\|UDP-3-O-[3-hydroxymyristoyl]-N-acetylglucosamine-deacetylase	gnl\|CDD\|273014	TIGR00325, UDP-3-O-_N-acetylglucosamine_deacetylase, UDP-3-0-acyl N-acetylglucosamine deacetylase. UDP-3-O-(R-3-hydroxymyristoyl)-GlcNAc deacetylase from E. coli , LpxC, was previously designated EnvA. This enzyme is involved in lipid-A precursor biosynthesis. It is essential for cell viability. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NZ_CP011484.1\|WP_064436386.1\|461080_463930_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_CP011484.1\|WP_000166660.1\|464257_464698_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|223850	COG0779, COG0779, Uncharacterized protein conserved in bacteria [Function unknown].	1.38171e-42
NZ_CP011484.1\|WP_000261683.1\|459961_460843_+\|homoserine-kinase	gnl\|CDD\|129295	TIGR00191, Homoserine_kinase, homoserine kinase. Homoserine kinase is part of the threonine biosynthetic pathway.Homoserine kinase is a member of the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase) and shares with them an amino-terminal domain probably related to ATP binding.P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054) [Amino acid biosynthesis, Aspartate family].	5.0745e-140
NZ_CP011484.1\|WP_001925758.1\|451586_452039_-\|Sec-independent-protein-translocase-subunit-TatB	gnl\|CDD\|235219	PRK04098, PRK04098, Sec-independent protein translocase subunit TatB.	2.10479e-54
NZ_CP011484.1\|WP_080012955.1\|460814_461084_+\|DUF448-domain-containing-protein	gnl\|CDD\|225350	COG2740, COG2740, Predicted nucleic-acid-binding protein implicated in transcription termination [Transcription].	5.21604e-15
NZ_CP011484.1\|WP_064436380.1\|452106_453117_-\|Holliday-junction-branch-migration-DNA-helicase-RuvB	gnl\|CDD\|234619	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB.	0
NZ_CP011484.1\|WP_064436387.1\|464858_465971_+\|metallophosphoesterase	gnl\|CDD\|277331	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.68013e-83

>NZ_CP011484.1|WP_001940406.1|455644_456586_+|outer-membrane-beta-barrel-protein
MKLKYWLVYLAFIIGLQATDYDNLEEENQQLDEKINNLKRQLTEKGVSPKEMDKDKFEEEYLERTYPKISSKKRKKLLKSFSIADDKSGVFLGGGYAYGELNLSYQGEMLDRYGANAPSAFKNNININAPVSMISVKFGYQKYFVPYFGTRFYGDLLLGGGALKENALKQSVGSFFYVLGAMNTDLLFDMPLDFKTKKHFLGVYAGFGIGLMLYQDKPNQNGRDLVVGGYSSPNFLWKSLIEVDYTFNVGVSLTLYRKHRLEIGTKLPISYLRMGVEEGAVYQNKENDERLLISANNQFKRSSFLLVNYAFIF
>NZ_CP011484.1|WP_064436381.1|454790_455633_+|outer-membrane-beta-barrel-protein
MCSKKIRNFILCFGFILSLHAEESMAEENMIKENPPKDAPILLEEKRTQTLEFEENKEVKKNIDEKSLLEEIHKKKRQLYMLKGELHEKNESLLFQQMAKNKSGFFIGVILGDIGVSAHSYEKFELLSNIQASPLLYGLRSGYQKYFANGISALRFYGEYLGGAMKGFKSDSLASYQTASLNIDLLMDKPIDKEKRFALGIFGGVGVGWNGMYQNLKEIKGYSQPNAFGLVLNLGVSMTLNLKHRFELALKMPPLKETSQTFLYYFKSTNIYYISYNYLL
>NZ_CP011484.1|WP_001876931.1|454078_454801_+|hypothetical-protein
MGLKKRAILWSLMGFCAGLNALDYDTLDPKYYKYIKYYKAYEDKEVEELIRDLKRANAKSGLILGINTGFFYNHEIMVKTNSSSITGNILNYLFAYGLRFGYQTFRPSFFARLVKPNIIGRRIYIQYYGGAPKKAGFGSVGFQSVMLNGDFLLDFPLPFVGKYLYMGGYMGLGLGVVAHGVNYTAEWGMSFNAGLALTVLEKNRIEFEFKILNNFPFLQSNSSKETWWGAIASIGYQYVF
>NZ_CP011484.1|WP_000062688.1|453117_453930_-|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MSMQTAPIKKITLNHLQAKKNQEKIIAITAYDALFAQIFDPLVDVILVGDSLNMSFFNQNDTLSASVKMMLYHTKAVCAGAKTPFIITDMPFGSYKDEKTALKNAIRVYKETQASAIKLEGGKEKAKLVKTLTNEGIIVVGHIGLMPQFVRLDGGYKIKGKNEEQQKKLLEDALSLEEAGVGLLVLEGITTPIAQTITQKIKIPTIGIGSGKDCDGQILVWSDMLGFFDSFKPKFVREYLKGKELIQNAIQQYADDVKKGNFPNELESYH
>NZ_CP011484.1|WP_064436380.1|452106_453117_-|Holliday-junction-branch-migration-DNA-helicase-RuvB
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLVGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAATKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPKTHALLKIPTLKSQTLF
>NZ_CP011484.1|WP_001925758.1|451586_452039_-|Sec-independent-protein-translocase-subunit-TatB
MFGMGFFEILVVLIVAIIFLGPEKFPQAVVDIVKFFRAVKKTLNDAKDTLDKEINIEEIKKETLEYQKLFENKVESLKGVKIEELEDAKITAENEIKSIQDLMQDYKQSLENNAPPNHSNKEVSSDEPPKEVQLTTDNNAKEHDKEKEHV
>NZ_CP011484.1|WP_000461196.1|450844_451594_-|twin-arginine-translocase-subunit-TatC
MFEDLKPHLQELRKRLMVSVGTILVAFLGCFHFWKNIFEFVKNSYKGTLIQLSPIEGVMVAVKISFSAAIVISMPIIFWQLWLFIAPGLYKNEKKVILPFVFFGSGMFLIGAAFSYYVVFPFIIEYLATFGSDVFAANISASSYVSFFTRLILGFGVAFELPVLAYFLAKVGLITDASLKAYFKYAIVVIFIVAAIITPPDVVSQIFMALPLVGLYGLSILIAKMVNPAPKDNENDHENDAKEHTKSES
>NZ_CP011484.1|WP_064436379.1|449806_450844_-|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MKEFDLESYDYYLPKELIANYPVLPKEKAKLLVYERRSQTITHTTFEHVLDFFPKNALVVLNDTKVIKARLFGSKHAFLPSKTTEVFFHRFFKGNTALTQIKGKIKAGDKIFFDENYYAEVLELLHNGQRLIAFYDNQTPLNQENILKLLEQYGHMPLPPYIKRADESLDAHEYQSVFAKHIGAVAAPTASLHFSQNALEKLLKDFKHAFLTLHVGAGTFLSVETKDIREHQIHTEVLHIPKKSQEILQESQEILCIGTTALRSVEYFKRLKNPNQESFECDIFLHLANPIQHVNYLLTNFHLPKSSLLMLVSAMIGLEKTKEIYKIAIEKKYRFYSYGDGMLIL
>NZ_CP011484.1|WP_064436378.1|449273_449810_-|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MNPLLQDYARILLEWNQTHNLSGARNLSELEPQITDALKPLEFVKDFKSCLDIGSGAGLPAIPLALEKPETQFILLEPRIKRAAFLNYLKSVLPLKNIEIIKKRLEDYQNLLQVDLITSRAVASSSFLIEKSQRFLKDKGYFLFYKGEQLKNEIAYKTTECFMHQKRVYFYKSKESLC
>NZ_CP011484.1|WP_080471228.1|449037_449331_-|prokaryotic-metallothionein-family-protein
MLYASKACLFLQIKGKFMLRILIPLLIIVWVLWRLFLRQKPHKNDHRDNHSYTQQTPKELEDHMIVCSKCQTYVSSKDAIYSGAVAYCSETCLKDKR
>NZ_CP011484.1|WP_080471230.1|457854_458505_+|septum-site-determining-protein-MinC
MDKNQYHCPHRASQTAFNERIAMLKTNQKNVHAFEIEKQEPEAVMEFLEKNHALLQYFLIIFKYDIELEVKAVLRKHQLLFLETNRALNGRYIKTTEKDANLLKQNNPNAIEPKTTIYERNIRSGEEIYSANHLIFLGNIHNGAKIISEGSVSVYGVCEGAIVCFGEYLILKEVKSAQIVFQNQILSLKEIERLLVNKNIKIITKNDDILDIKEVL
>NZ_CP011484.1|WP_064436384.1|458501_459389_+|UDP-3-O-[3-hydroxymyristoyl]-N-acetylglucosamine-deacetylase
MKQTTINHSVELVGIGLHKGVPVKLVLEPLEENQGIVFYRSDLGVKLPLKPENIVDTKMATVLGKDNARISTIEHLLSAIHAYGIDNLKISVDNEEIPIMDGSALTYCMLLDEAGIKELNAPKKVMEIKKAVEVREGDKFVKIEPDSQLSLNFTIDFNHPVIAKQAHHFVFSKTAYKEQVAKARTFGFLQEVNYLRSIGLAKGGSLNNCIVLDENSILNKEGLRCEKEFVCHKILDAMGDLMVLGMPVMGKYTSFSGSHKLNSMLVKAILADAKNYEVLIASDPAKEFALQKAFA
>NZ_CP011484.1|WP_080471313.1|459461_459908_+|hypothetical-protein
MYQNDFLCNSYTSKLKTSEALVGVFSQLFEDFKNPTIYPTIHSNLPAIKGVYYAKGPGSFTSLKLTHVFLHTLALIHDFELYSTTGFDFNDNTPILAYANKYFVSKERESLTDFKDLKIAPKDFMLPSFLEKDKFTQLNTPFYILPPI
>NZ_CP011484.1|WP_000261683.1|459961_460843_+|homoserine-kinase
MVVSVPATSANLGPGFDCLGLSLNLRNRFFIEPSNIHAVKLVGEGEGIPKFLTNNIFTKVFYEILKKHGNDGSFKFLLHNKVPITRGMGSSSAMIVGAVASAFAFLGFPFDRENILNTALIYENHPDNITPAVFGGYNAAFVEKKKVISLKTKIPSFLKAVMVIPNRAISTKQSRHLLPKRYSVQESVFNLSHASLMTMAIAQGKWDLLRCCSKDRMHQYKRMQTYPVLFAIQKLALENNALMSTLSGSGSSFFNMCYEEDAPKLKQVLSKKFPKFRVAVLDFDNDGVLIEKD
>NZ_CP011484.1|WP_080012955.1|460814_461084_+|DUF448-domain-containing-protein
MMESLLRKTEIKIRMCVACRMRQPQKGLLRLKSFENQIVEFDGKGRSFYVCENCLKNGEKKLLKAISKIKNAPKDTKNIINWIKERSIA
>NZ_CP011484.1|WP_064436386.1|461080_463930_+|translation-initiation-factor-IF-2
MSDMVDLKKFVTELGKTQKELKNVIEQAKDIGLELKTNSKMTPEQAGKLYKYIVDGIKEQIQANQPAKNSEQDNKDDLKIAATPKPLAKKASKTPKKEETKSQPKPKKTKEKKKEAPAPIIKKKGIEIVNTFENQTPPVENTPKAVSHSQIEKAKQKLQEIQKSREALNKLTQSNTNTANNANSASNVSNAKKEISEVKKQEQEIKRHENIKRYTGFRVIKRNDETESEIENSVTESKKPTQSAAAIFEDIKKEWQEKDKQEAKKPKKPSKPKATPTAKNNKSHKIDFSDARDFKGNDIYDDETDEILLFDLHEQDNLNKEEEEKEARQNINDRVRVQRKNPWMNEGGIKRQSKKKRAFRNDSSQKVIQSAIAIPEEVRVYEFAQKANLNLADVIKTLFNLGLMVTKNDFLDKDSIEILAEEFHLEISVQNTLEEFEVEEVLEGVKKERPPVVTIMGHVDHGKTSLLDKIRDKRVAHTEAGGITQHIGAYMVEKNDKWVSFIDTPGHEAFSQMRNRGAQVTDIAVIVIAADDGVKQQTIEALEHAKAANVPVIFAMNKMDKPNVNPDKLKAECAELGYNPVDWGGEHEFIPVSAKTGDGIDNLLETILIQADIMELKAIEEGSARAVVLEGSVEKGRGAVATVIVQSGTLSVGDSFFAETAFGKVRTMTDDQGKSIQSLKPSMVALITGLSEVPPAGSVLIGVENDSIARLQAQKRATYLRQKALSKSTKVSFDELSEMVANKELKNIPVVIKADTQGSLEAIKNSLLELNNEEVAIQVIHSGVGGITENDLSLVSSSEHAVILGFNIRPTGNVKNKAKEYNVSIKTYTVIYALIEEMRSLLLGLMSPIIEEEHTGQAEVRETFNIPKVGTIAGCVVSDGVIARGIKARLIRDGVVIHTGEILSLKRFKDDVKEVSKGYECGIMLENYNEIKVGDVFETYKEIHKKRTL
>NZ_CP011484.1|WP_000991163.1|463929_464265_+|30S-ribosome-binding-factor-RbfA
MNAHKERLESNLLELLQEALASLNDGELNSLSVTKVECSKGKHHAYVFVLSSDHKILSKLKKAEGLIRQFVLQASGWFKCPKLSFVLDNSLEKQLRLDAIFNEIAKGKDND
>NZ_CP011484.1|WP_000166660.1|464257_464698_+|ribosome-maturation-factor-RimP
MTKRIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEVISPLLDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLINKESFQAVLKDANDLSADFELEDHAIKSVEYKDLKKVKTLFEW
>NZ_CP011484.1|WP_064436387.1|464858_465971_+|metallophosphoesterase
MLISIAFLLVLCLLNYSSFRMLKSFLTLKKISRYAYLGFFILLSTGEAAFVFYRNVMPSHLFVLTSACSFVSFIVFIFSLSFYGFSYSVEKIDFLPSRRKGLKNFLRIGFYLALLGYFWRGFYEGLARPKIKETPIYLDKLDKELKVILLTDMHVGSLLQKDFVNYIVEEVNQQKVDMVLIGGDLVDENIEKVKSFLLPLNNLKSTHGTFYVPGNHEYYHGIEPILSFLNTLDMTILGNECVHLGGINLCGVYDYFARKRQNFAPNIDEALKKRDSSKPTILLAHQPKQIRSVKESHSVDLVLSGHTHAGQIFPFSLLVKLAQTYLHGLYKHSGTTQIYVSSGAGYWGVPLRFLAPSEIAYLRLLPKNQA
>NZ_CP011484.1|WP_001264984.1|466326_466998_+|response-regulator-like-transcription-factor-HsrA
MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMVSDKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPFEVLTHLARHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGYRFCYPKPACEE

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Crispr_ID: NZ_CP011484_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011484_2

994662-994799

Orphan

I-B

Consensus_repeat	Method
TTCAATCAAGGGACTTATCACTTTAAT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP011484_2

>merge|NZ_CP011484|2|994662-994799|CRISPRCasFinder
TTCAATCAAGGGACTTATCACTTTAATAGCGCCCAATCCACTTTTGAAAACAGCAGTTTCAATCAAGGGACTTATAACTTTAATGACAGCGTAAGCTTTAATAATAACACCTTCAATCAAGGGACTTATGATTTTAAT

>NZ_CP011484|2|2|994662-994799|CRISPRCasFinder
TTCAATCAAGGGACTTATCACTTTAAT	AGCGCCCAATCCACTTTTGAAAACAGCAGT
TTCAATCAAGGGACTTATAACTTTAAT	GACAGCGTAAGCTTTAATAATAACACC
TTCAATCAAGGGACTTATGATTTTAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011484.1\|WP_064436669.1\|988171_988603_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376519
NZ_CP011484.1\|WP_064436670.1\|988607_991865_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP011484.1\|WP_064436671.1\|991964_992657_-\|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl\|CDD\|198414
NZ_CP011484.1\|WP_064436666.1\|979661_981209_+\|Hop-family-adhesin-AlpA	unknown	unknown	gnl\|CDD\|280099
NZ_CP011484.1\|WP_001115895.1\|1002291_1002498_-\|4-oxalocrotonate-tautomerase-family-protein	unknown	unknown	gnl\|CDD\|129125
NZ_CP011484.1\|WP_001034745.1\|1007562_1008222_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011484.1\|WP_080471256.1\|1004315_1005296_+\|zinc-metalloprotease-HtpX	unknown	unknown	gnl\|CDD\|235081
NZ_CP011484.1\|WP_080471325.1\|975581_976721_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|223897
NZ_CP011484.1\|WP_064436675.1\|1005296_1005839_+\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|129173
NZ_CP011484.1\|WP_033766140.1\|983594_985139_-\|outer-membrane-beta-barrel-protein-HofG	unknown	unknown	gnl\|CDD\|334957
NZ_CP011484.1\|WP_064436667.1\|981230_982823_+\|Hop-family-adhesin-AlpB	unknown	unknown	gnl\|CDD\|280099
NZ_CP011484.1\|WP_064436678.1\|1008824_1009580_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|223675
NZ_CP011484.1\|WP_000722465.1\|1006762_1007566_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP011484.1\|WP_033748924.1\|992802_993801_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
NZ_CP011484.1\|WP_064436668.1\|985466_987914_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|224544
NZ_CP011484.1\|WP_001099601.1\|1002653_1003235_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|273176
NZ_CP011484.1\|WP_064436676.1\|1005854_1006766_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NZ_CP011484.1\|WP_064436677.1\|1008225_1008828_+\|6-pyruvoyl-tetrahydropterin-synthase-family-protein	unknown	unknown	gnl\|CDD\|223792
NZ_CP011484.1\|WP_064436673.1\|1003231_1004377_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|272903
NZ_CP011484.1\|WP_064436665.1\|976724_978755_+\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|223288

Protein	Function_ID	Function_description	E-value
NZ_CP011484.1\|WP_064436669.1\|988171_988603_-\|hypothetical-protein	gnl\|CDD\|376519	pfam01300, Sua5_yciO_yrdC, Telomere recombination. This domain has been shown to bind preferentially to dsRNA. The domain is found in SUA5 as well as HypF and YrdC. It has also been shown to be required for telomere recombniation in yeast.	0.00035514
NZ_CP011484.1\|WP_064436670.1\|988607_991865_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP011484.1\|WP_064436671.1\|991964_992657_-\|Bax-inhibitor-1/YccA-family-protein	gnl\|CDD\|198414	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins. This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	4.2145e-53
NZ_CP011484.1\|WP_064436666.1\|979661_981209_+\|Hop-family-adhesin-AlpA	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	4.87123e-54
NZ_CP011484.1\|WP_001115895.1\|1002291_1002498_-\|4-oxalocrotonate-tautomerase-family-protein	gnl\|CDD\|129125	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function. [Energy metabolism, Other].	2.12365e-26
NZ_CP011484.1\|WP_080471256.1\|1004315_1005296_+\|zinc-metalloprotease-HtpX	gnl\|CDD\|235081	PRK02870, PRK02870, heat shock protein HtpX; Provisional.	0
NZ_CP011484.1\|WP_080471325.1\|975581_976721_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	2.14847e-52
NZ_CP011484.1\|WP_064436675.1\|1005296_1005839_+\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|129173	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I. alternate names: Punch (Drosophila),GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	1.39957e-105
NZ_CP011484.1\|WP_033766140.1\|983594_985139_-\|outer-membrane-beta-barrel-protein-HofG	gnl\|CDD\|334957	pfam02521, HP_OMP_2, Putative outer membrane protein. This family consists of putative outer membrane proteins from Helicobacter pylori (campylobacter pylori).	1.13503e-178
NZ_CP011484.1\|WP_064436667.1\|981230_982823_+\|Hop-family-adhesin-AlpB	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	1.63192e-53
NZ_CP011484.1\|WP_064436678.1\|1008824_1009580_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|223675	COG0602, NrdG, Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones].	8.95359e-47
NZ_CP011484.1\|WP_000722465.1\|1006762_1007566_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	4.41283e-126
NZ_CP011484.1\|WP_033748924.1\|992802_993801_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	2.55568e-156
NZ_CP011484.1\|WP_064436668.1\|985466_987914_-\|TonB-dependent-receptor	gnl\|CDD\|224544	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism].	2.62949e-35
NZ_CP011484.1\|WP_001099601.1\|1002653_1003235_+\|recombination-protein-RecR	gnl\|CDD\|273176	TIGR00615, Recombination_protein_RecR, recombination protein RecR. All proteins in this family for which functions are known are involved in the initiation of recombination and recombinational repair. RecF is also required. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	1.66202e-97
NZ_CP011484.1\|WP_064436676.1\|1005854_1006766_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	3.94216e-75
NZ_CP011484.1\|WP_064436677.1\|1008225_1008828_+\|6-pyruvoyl-tetrahydropterin-synthase-family-protein	gnl\|CDD\|223792	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism].	2.15964e-21
NZ_CP011484.1\|WP_064436673.1\|1003231_1004377_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|272903	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family. an EGAD loading error caused one member to be called surE, but that's an adjacent gene. MJ11364 is a strong partial match from 50 to 230 aa. [Protein synthesis, tRNA and rRNA base modification].	4.85268e-135
NZ_CP011484.1\|WP_064436665.1\|976724_978755_+\|ATP-dependent-helicase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	3.14847e-133

>NZ_CP011484.1|WP_033748924.1|992802_993801_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MKIFINGFGRIGRCVLRAILERNDTNPQLEVIGINDPANWEILAYLLEHDSAHGLLNKEARYSNGKLIIDSLEIPVFNSIKDLKGVGVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHFLYQNQAIVSNASCTTNAIAPICTILDKAFSIKEGMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRVPSLDVSMIDLSLFLEKKALKESINDLLITASKGVLKGVLEIDLKERVSSDFISNPSSVIIAPDLTFTLENMVKIMGWYDNEWGYSNRLVDMAQFMYHY
>NZ_CP011484.1|WP_064436671.1|991964_992657_-|Bax-inhibitor-1/YccA-family-protein
MALYDRANSRNAYAEDSVLHESELVSFVKTTYKFFAGSLLLATIGALLGLMNFQAVVQYKWVFFIAEIAAFFGLMFSKSKPGLNLFMLFAFTSLSGVTLVPLLGMVIAKAGLGAVWQALGMTTIVFGLMSVYALKTKNDLANMGKMLFIALIVVVVCSLINLFLGSPMFQVVIAGASAILFSLYIAYDTQNIVRGMYDSPIDAAVSLYLDFLNVFISILQIIGIFSDRDK
>NZ_CP011484.1|WP_064436670.1|988607_991865_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDISNILLIGSGPIVIGQACEFDYSGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITPENIAAIIEKEKIDAILPTMGGQTALNAVMQMHQRGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAYSELEALEAISEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESLLGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFAILREIGVDTGGSNVQFAIHPETLKMVVIEMNPRVSRSSALASKATGFPIAKVATMLAVGFSLDEIKNDITNTPASFEPALDYIVVKIPRFAFEKFAGVSSTLGTSMKSIGEVMAIGGNFLEALQKALCSLENNWLGFESLSKDLEVIKKEIRRPNPKRLLYIADAFRLGVSVDEVFELCQIDRWFLSQIQKLVKAEESINSSVLTDAKKLRGLKNLGFSDARIAAKIKENENLEVSPSEVELARSNLQIAPNFEEVDTCAAEFLSLTPYLYSTYAPNPLPPIENKQEKQEKKILIIGSGPNRIGQGIEFDYCCVHASFALKDLNIKSVMLNCNPETVSTDYDTSDTLYFEPIHFECVKSIIQRERVDGIIVHFGGQTPLKLAKDLAKMQAPIIGTPFKVIDIAEDREKFSLFLKELDIKQPENGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQILENIEELRHYLESVTHSLEISPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEAGIHSGDSACFIPSTLSPEILDEIERVSAKIALHLGVVGLLNIQFAVYENSLYLIEVNPRASRTVPFLSKALGVPLAKVATRVMVLEDLKEALKFYDKKNIVGYSKGVYKPKMPHFVALKEAVFPFNKLYGSDLILGPEMKSTGEVMGIARSLGLAFFKAQTACFNPIKNKGLIFVSIKDKDKEEACVLMKRLVQLGFELCATEGTHKALEKAGVKSLKVLKISEGRPNIMDLMMNGEISMAINTSDHKSQDDAKLIRASVLKNHVSYFTTLSAIEVLLLALEESSQKDELLALQDYLK
>NZ_CP011484.1|WP_064436669.1|988171_988603_-|hypothetical-protein
MALVYLAQSDTTIGLLSKDSEKLNALKNRPKNQSVLIESADFTTLKSLVRAPNAFKNLIRRSAKTTFIYPNSKAVRVIRGRHGDFLKRFKTLYSTSANLTQCAYDKEIASNLADVIVSDERGLFESASSKIFKLYKHKKVRVR
>NZ_CP011484.1|WP_064436668.1|985466_987914_-|TonB-dependent-receptor
MNDKRFRKYCSFSIFLSLLGMFELEAKEEEKEEKKTERKKDKEKNAQHTLGKVTTQAAKIFNYNNQTTISSKELERRQANQISDMFRRNPNINVGGGAVIAQKIYVRGIEDRLARVTVDGAAQMGASYGHQGNTIIDPGMLKSVVVTKGAAQASAGPMALIGAIKMETRSASDFIPKGKDYAISGAATFLTNFGDRETIMGAYRHNHFDMLLYYTHQNIFYYRDGDNAMKNLFDPKADNKVTASPSEQNNVMAKINGYLSDRDTLTLSYNMTRDNANRPLRANFTGTFLPYSCGDFNAFPNEKNPSDCLFENDASLFKTYSVNLVHNVSLNYEREGGSRFGDPKLKINGYTSIRNVQIDPLFRPNDIATTIPFTPNPQLSQGEENQCVAQGGIYDALKQTCSITFKSLGGGSVVANKNLFIINSGFNANMIHTIDHKNDNLLEYGLNYQNLTTFDKAIPNSELVKPGDAPDACLRVTGPNDPNMNGRCQRNGATANVVGVYAQANYTLHPMVTLGAGTRYDVYTLVDKDWQLHVTQGFSPSAALNVSPLENLNFRLSYAYVTRGPMPGGLVWMRQDNLRYNRNLKPEIGQNAEFNTEYSSQYFDFRAAGFVQLISNYINQFSSTLFVTNLPSQDIIYVPGYEVSGTAKYKGFSLGLSVARSWPSLKGRLIADVYELAATTGNVFILTASYTIPRTGLSITWLSRFVTDLSYCSYSPYRNGPTDIDRRPSNCPKTPGIFHVHKPGYGVSSFFITYKPTYKKLKGLSLNAVFNNVFNQQYINQASPVMSPDEPNQDKYARGMAEPGFNARFEISYKF
>NZ_CP011484.1|WP_033766140.1|983594_985139_-|outer-membrane-beta-barrel-protein-HofG
MKQEKYFLTSSLSLLSFLLCPVEAFDYRFSGRVENFSKIGFNNSQINTKKGIYPTESFIDIVTLAQVKVNLLPKGIENHRLSVSLGGAIAAIPYDKTKYYINQANGKVFGSIVENFIGGYHGYFFNKYLGPAYAGTSQSASYHARPYVVDTAFLRYDYKDVFGFKAGRYEANIDFMSGSNQGWEVYYQPYKTETQRLRFWWWSSFGRGLAFNSWIYEFFATVPYLKKGGNPSNSNDFINYGWHGITTTYSYKGLDAQFFYYFAPKTYNAPGFKLVYDTNRNFENVGFRSQSMIMTTFPLYYRGWYNPETNTYSLEDSTPHGSLLGRNGVTLNIRQVFWWDNFNWSIGFYNTFGNSDAFLGSHTMPRGNNTSYISNEISVTTRHAGMIGYDFWDNTAYDGLADAITNANTFTFYTSVGGIHKRFAWHVFGRVSHANKNALGQVGRANEYSLQFNASYAFTESVLLNFRITYYGARINKGYQAGYFGAPKFNDPDGDFSANYQDRSYMMTNLTLKF
>NZ_CP011484.1|WP_064436667.1|981230_982823_+|Hop-family-adhesin-AlpB
MKQNLKPFKMIKENLMTQSQKVRFLAPLSLALSLSFNPLGAEEDGGFMTFGYELGQVVQQVKNPGKIKAEELAGLLNSTTTNNTNINVAGTGGNVAGTLGNLFMNQLGNLINLYPTLNTSSIHQCGSNGTAASGSTTTAAATTNNSPCFQGNLSLYNEMVSSIKTLSQNISKNIFQGNNNTTSANLSNQLSELNTASVYLTYMNSFLNANNQAGGIFQNNTNRSYGNGVTAQQIAYVLKQASITMGPSGDSGAAGAFLDAALAQHVFNSANAGNDLSAKEFTSLVQNIVSNSQNALTLANNANISNSTGYQVSYGGNIDQTRSTQLLNNTTNTLAKVTALNNELKANPWLGNFAAGNSSQVNAFNGFITKIGYKQFFGENKNVGLRYYGFFSYNGAGVGNGPTYNQVNLLTYGVGTDVLYNVFSRSFGSRSLNAGFFGGIQLAGDTYISTLRNSPQLASRPTATKFQFLFDVGLRMNFGILKKDLKSHNQHSIEIGVQIPTIYNTYYKAGGAEVKYFRPYSVYWVYGYAF
>NZ_CP011484.1|WP_064436666.1|979661_981209_+|Hop-family-adhesin-AlpA
MTKKNRTLFLSLALCASISYAEDDGGFFTVGYQLGQVMQDVQNPGGTKRDELARELNADVTNNILNNNTGGNVAGALSNAFSQYLYSLLGAYPTKLNGNDVSANALLQGAVGSGTCAAAGTAGSSSLNTQSACTAAGYYWLPSLTDRVLSTIGSQTNYGTDTNFPNMQQQLTYLNAGNVFFNAMNKALEAKNGTTTASGATGSDGQTYPQQAIQYLKDQQTILNNAANLLKQDELLLEAFNSAVAANIGNKEFNSAVFTGLVQGIIDQSQAVYNELTKNTISGSAVNSVGINSNQANAVNTRASQLPNALYNAEVTLNKINALNNQVRSMPYLPQFRAGNSRATNIMNGFYTKIGYKQFFGKKRNIGLRYYGFFSYNGASVGFRSTQNSVGLYTYGVGTDVLYNIFSRSYQNRSVDMGFFSGIQLAGETVQSTLRDDPNVKLHGKINNTHFQFLFDFGMRMNFGKLDGKSNRHNQHTVEFGVVVPTIYNTYYKSVGTTVKYFRPYSVYWSYGYSF
>NZ_CP011484.1|WP_064436665.1|976724_978755_+|ATP-dependent-helicase
MLETLQLNPEQRKAASALQGYNLIIASAGTGKTSTIVGRILHLLDNGIKPEEILLLTFTNKASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKNALTDEDKKPYTSQHLYALYSLYTNALKQEDFSAWLSSKNPEHAPYAAFYENILEEFENTKKKHDYIDYNDLLLLFKKAMLERPSPYKEVLCDEFQDTNPLQESILDAINPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKNARVFTLTKNYRSSKEILDLANQVIQHNQRIYPKNLEVVKSGKFNKPTLLNYNDNIAQCQDIAKRIVMRKDFKEVAVIFRNNASADQLEAALRSHNVPSKRKGSASFFESKEVALALDICALLFNPKDIMAAIHILSHISDIGSNTAKDIHEALMLLGNGDLKSALIQPNQEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFYSHPVLMHPKISLNGAKMLSDFFILYTKAPTHSPSALIKHILESAFFQTFKTRLLKERSKNKDGSYNEFKKLQAQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSSEATQGEGVNLLSVHASKGLEFKDVYIIDLMEGRFPNHKLMNTGGGIEEERRLFYVAITRAKENLWLSYAKNELRENAKPKEHKPSVFLYEAGLLKPDSK
>NZ_CP011484.1|WP_080471325.1|975581_976721_+|class-I-SAM-dependent-methyltransferase
MNNLDIKTLGQVFTPNNIVDFMLTLKHNQGSVLEPSAGDGSFLKRLKKAVGIEIDPKICPKNALCMDFFDYPLENQFDTIIGNPPYVKHKDIAPSTKEKLHYSLFDERSNLYLFFIEKAIKHLKPKGELIFITPRDFLKSTSSVKLNEWIYKEGTITHFFELGDQKIFPNAMPNCVVFRFCKGDFSRITNDGLQFVCKKGILYFLNQSYTQKLSEVFKVKVGAVSGCDKIFKNETYGNLEFVTSITKRTNVLEKMVFVNKPNDYLLQHKDSLMQRKIKKFNESNWFEWGRMHHISPKKRIYVNTKTRQKNPFFIHQCPNYDGSILALFPYNQNLDLQNLCDKLNAINWQELGFVCDGRFLFSQRSLENTLLPKDFLNLG
>NZ_CP011484.1|WP_001115895.1|1002291_1002498_-|4-oxalocrotonate-tautomerase-family-protein
MPFINIKLVPENGGPTNEQKRQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGESVHHLRQKN
>NZ_CP011484.1|WP_001099601.1|1002653_1003235_+|recombination-protein-RecR
MNTYKNSLNHFLNLVDCLEKIPNVGKKSAFKMAYHLGLENPYLALKITHALENALENLKTCASCNALSESEVCEICSDESRQNSQLCMVLHPRDVFILEDLKDFLGRYYVLNSIEEVDFNALEKRLIEENIKEIIFAFPPTLANDSLMLYIEDKLQRFHLTFTKIAQGVPTGVNFENIDSVSLSRAFNSRIKA
>NZ_CP011484.1|WP_064436673.1|1003231_1004377_+|tRNA-pseudouridine(13)-synthase-TruD
MNLNFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLHIFSQILGVKIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTHNLQERNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTKQVLEQIAQFGMPNYFGSQRFGKFNDNHKEGLKILQNETKFAHQKLNAFLISSYQSYLFNSLLSKRLEISKIISDFSLKENLEFFKQKNLSVNSNALKALKNQAHPFKILEGDVMRHYPYGKFFDALKLEKESERFLNKEAVPTGLLDGKKALYAKNLSFEIEKEFQHNLLSSHAKTLGSRRFFWVFAENITSQYIKEKAQFELGFYLPKGSYASALLKEIKHEKGENNDEF
>NZ_CP011484.1|WP_080471256.1|1004315_1005296_+|zinc-metalloprotease-HtpX
MRARCSKKSSMRKEKIMTNFEKIIAQNRIKTNAVLTTYCAIFAFIGLLVDAIRINANDLGIALFKLITFQIFPTITIIMFLVAFVIIVVCIQNFSSIMLSGDGYKLIDTSKVLSSKENQIHRLLLELLEEAKLHFEPKLYIINAPYMNAFASGWNESNSLIALTSALIERLDRDELKAVIAHELSHIRHNDIRLTMCVGILSNIMLLVANFSVYFFMGNRKNSGANLARMILLVLQIVLPFLTLILQMYLSRTREYMADSGAAFLMHDNKPMIRALQKISNDYTNNDYKEIDKNSTRSAAYLFNAEMFSTHPSVKNRIQSLRKRVI
>NZ_CP011484.1|WP_064436675.1|1005296_1005839_+|GTP-cyclohydrolase-I-FolE
MENFFNQFFEDIGEDKNREGLKETPKRVQELWKFLYKGYKEDPRVALKSAYFQGVCDEMIVAQNIEFYSTCEHHLLPFLGNISLGYIPKEKIVGISAIAKLIEIYSKRLQIQERLTTQIAETFDEIIEPRGVIVVCEAKHLCMSMQGVQKQNTIIKTSVLRGLFKKDPKTRAEFMQLLKS
>NZ_CP011484.1|WP_064436676.1|1005854_1006766_+|polyprenyl-synthetase-family-protein
MSNPNLSFYYNECERFESFLKNHHLHLESFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCSLVGQKDYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNSLLESHIIVELIKILSANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLEKASGYAHTLKTEVLNDLNALEPTYLSLQENLNALLNTLFKGKT
>NZ_CP011484.1|WP_000722465.1|1006762_1007566_+|5'/3'-nucleotidase-SurE
MKKILLTNDDGYHAKGIKALEQALEEMAEIYVVAPKHEKSACSQCITITAPLRAEKIKGKEGRHYRIDDGTPSDCVYLAINELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQILSNRNKNTPFSFDLAQKIIQDLVQNVFTKGYPLKGRKLLNVNVPNCSLQEYKGERITPKGYRLYKKEVHKRTDPKNESYFWLGLHPLEWQKRENEDRLSDFDAIASNHASITPLNLDLTSYDDLKSLESWHEGMLK
>NZ_CP011484.1|WP_001034745.1|1007562_1008222_+|hypothetical-protein
MNKKHRLAFLGLIVGVLFFFSACQHRLHMGYYSEVTGDYLFNYNSTIVVAYDRSDAMTSYYINVIVYELQKLGFYNVFTQAEFPLDKAKNVIYARIVRNISAVPFYQYNYQLIDQVNKPCYFLGGQFYCSQTPTDYYAINGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGYQMLYRDLIKSTIKRIDFNRPERYYYNLRLPLYQPCYRQ
>NZ_CP011484.1|WP_064436677.1|1008225_1008828_+|6-pyruvoyl-tetrahydropterin-synthase-family-protein
MVIRRLYQFCASHVVRNCSSLKCAQNIHGHNYEVEVFIETNRLDNANMALDFGLMQQEMQTFIDSFDHAHHFWDKESDEFQRFIETNCVRYVKCSFNLSAESYALMFLYYLTRILQKSVFSNNEGELKVSSVRVHETKNGYAESFLKDLENPYFKSLVHDHCVSFSQGIQSLWHDKDFFHKIISDEEKCFFHAKPLHQIP
>NZ_CP011484.1|WP_064436678.1|1008824_1009580_+|7-carboxy-7-deazaguanine-synthase-QueE
MKLPVVESFFSLQGEGKRTGKPSLFLRLGGCNLSCKGFNCKTLFNDEILTGCDSLYAVHPKFKTSWDYYNEPKPLIERLVNLAPSYKDFDFILTGGEPSLYFNNPILLSVLEHFYHKKIPLCVESNGSIFFEFSPILKELHFTLSVKLSFSLEQESKRINLKALQNILNNAKSTHFKFVLESQNAAQSIAEIQSLLKQLSLKNNEIFLMPLGTTNNELDKNLKTLAPLAIKHGFRLSDRLHIRLWDNQKGF

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Crispr_ID: NZ_CP011484_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011484_3

1178885-1178974

Orphan

Consensus_repeat	Method
CGCTTCAAGGCTTGCGGTTTTGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011484_3

>merge|NZ_CP011484|3|1178885-1178974|CRISPRCasFinder
CGCTTCAAGGCTTGCGGTTTTGTTAGCGTTGATTTCATTGTTGGAGTTCGTTTTAGCCTGCGTTAGCGCTTCAAGGCTTGCGGTTTTGTT

>NZ_CP011484|3|3|1178885-1178974|CRISPRCasFinder
CGCTTCAAGGCTTGCGGTTTTGTT	AGCGTTGATTTCATTGTTGGAGTTCGTTTTAGCCTGCGTTAG
CGCTTCAAGGCTTGCGGTTTTGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011484.1\|WP_064436777.1\|1175845_1176676_+\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|280099
NZ_CP011484.1\|WP_064436780.1\|1179459_1181085_-\|DUF3519-domain-containing-protein	unknown	unknown	gnl\|CDD\|376228
NZ_CP011484.1\|WP_064436784.1\|1184402_1186223_-\|flagellar-hook-associated-protein-FlgK	unknown	unknown	gnl\|CDD\|236270
NZ_CP011484.1\|WP_064436776.1\|1174225_1175548_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|181437
NZ_CP011484.1\|WP_064436785.1\|1186224_1186659_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011484.1\|WP_000656179.1\|1171530_1171923_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|236596
NZ_CP011484.1\|WP_064437088.1\|1186790_1187729_-\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|273211
NZ_CP011484.1\|WP_064436781.1\|1181053_1181254_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011484.1\|WP_000486470.1\|1170954_1171515_+\|pyruvate-flavodoxin-oxidoreductase-subunit-gamma	unknown	unknown	gnl\|CDD\|180284
NZ_CP011484.1\|WP_001129863.1\|1171932_1173156_+\|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181999
NZ_CP011484.1\|WP_064436775.1\|1170020_1170683_-\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|280099
NZ_CP011484.1\|WP_001088951.1\|1188162_1188369_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011484.1\|WP_000238141.1\|1173168_1174113_+\|pyruvate-ferredoxin-oxidoreductase-subunit-beta	unknown	unknown	gnl\|CDD\|239471
NZ_CP011484.1\|WP_064436774.1\|1168706_1170014_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011484.1\|WP_001179281.1\|1188400_1188958_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223976
NZ_CP011484.1\|WP_064436783.1\|1181498_1182269_-\|HP1117-family-Sel1-like-repeat-protein	unknown	unknown	gnl\|CDD\|223861
NZ_CP011484.1\|WP_064436778.1\|1176700_1178677_-\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_CP011484.1\|WP_001927726.1\|1182511_1184215_-\|gamma-glutamyltransferase	unknown	unknown	gnl\|CDD\|129176
NZ_CP011484.1\|WP_080471267.1\|1187890_1188121_-\|flagellar-biosynthesis-anti-sigma-factor-FlgM	unknown	unknown	gnl\|CDD\|377300
NZ_CP011484.1\|WP_080471266.1\|1167561_1168638_-\|glycosyltransferase-family-8-protein	unknown	unknown	gnl\|CDD\|224359

Protein	Function_ID	Function_description	E-value
NZ_CP011484.1\|WP_064436777.1\|1175845_1176676_+\|outer-membrane-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	1.78863e-35
NZ_CP011484.1\|WP_064436780.1\|1179459_1181085_-\|DUF3519-domain-containing-protein	gnl\|CDD\|376228	pfam18809, PBECR1, phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease1. A predicted endoRNase of the Barnase-EndoU-ColicinE5/D-RelE like nuclease fold found in polyvalent proteins of phages and conjugative elements. The predicted active site contains a conserved histidine and threonine residues.	1.43943e-20
NZ_CP011484.1\|WP_001179281.1\|1188400_1188958_-\|peptidylprolyl-isomerase	gnl\|CDD\|223976	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones].	3.28201e-51
NZ_CP011484.1\|WP_064436776.1\|1174225_1175548_+\|adenylosuccinate-lyase	gnl\|CDD\|181437	PRK08470, PRK08470, adenylosuccinate lyase; Provisional.	0
NZ_CP011484.1\|WP_000656179.1\|1171530_1171923_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|236596	PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed.	1.42691e-83
NZ_CP011484.1\|WP_064437088.1\|1186790_1187729_-\|DNA-cytosine-methyltransferase	gnl\|CDD\|273211	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	4.26713e-122
NZ_CP011484.1\|WP_000486470.1\|1170954_1171515_+\|pyruvate-flavodoxin-oxidoreductase-subunit-gamma	gnl\|CDD\|180284	PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated.	2.86308e-128
NZ_CP011484.1\|WP_001129863.1\|1171932_1173156_+\|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha	gnl\|CDD\|181999	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha.	0
NZ_CP011484.1\|WP_064436775.1\|1170020_1170683_-\|outer-membrane-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	3.89497e-34
NZ_CP011484.1\|WP_000238141.1\|1173168_1174113_+\|pyruvate-ferredoxin-oxidoreductase-subunit-beta	gnl\|CDD\|239471	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.	1.82721e-136
NZ_CP011484.1\|WP_064436784.1\|1184402_1186223_-\|flagellar-hook-associated-protein-FlgK	gnl\|CDD\|236270	PRK08471, flgK, flagellar hook-associated protein FlgK; Validated.	0
NZ_CP011484.1\|WP_064436783.1\|1181498_1182269_-\|HP1117-family-Sel1-like-repeat-protein	gnl\|CDD\|223861	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].	1.85262e-39
NZ_CP011484.1\|WP_064436778.1\|1176700_1178677_-\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP011484.1\|WP_001927726.1\|1182511_1184215_-\|gamma-glutamyltransferase	gnl\|CDD\|129176	TIGR00066, Contains:_Gamma-glutamyltranspeptidase_large_chain, gamma-glutamyltranspeptidase. Also called gamma-glutamyltranspeptidase (ggt). Some members of this family have antibiotic synthesis or resistance activities. In the case of a cephalosporin acylase from Pseudomonas sp., the enzyme was shown to retain some gamma-glutamyltranspeptidase activity. Other, more distantly related proteins have ggt-related activities and score below the trusted cutoff. [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs].	0
NZ_CP011484.1\|WP_080471267.1\|1187890_1188121_-\|flagellar-biosynthesis-anti-sigma-factor-FlgM	gnl\|CDD\|377300	pfam04316, FlgM, Anti-sigma-28 factor, FlgM. FlgM binds and inhibits the activity of the transcription factor sigma 28. Inhibition of sigma 28 prevents the expression of genes from flagellar transcriptional class 3, which include genes for the filament and chemotaxis. Correctly assembled basal body-hook structures export FlgM, relieving inhibition of sigma 28 and allowing expression of class 3 genes. NMR studies show that free FlgM is mostly unfolded, which may facilitate its export. The C terminal half of FlgM adopts a tertiary structure when it binds to sigma 28. All mutations in FlgM that prevent sigma 28 inhibition affect the C-terminal domain and is the region thought to constitute the binding domain. A minimal binding domain has been identified between Glu 64 and Arg 88 in Salmonella typhimurium. The N-terminal portion remains unstructured and may be necessary for recognition by the export machinery.	9.08102e-05
NZ_CP011484.1\|WP_080471266.1\|1167561_1168638_-\|glycosyltransferase-family-8-protein	gnl\|CDD\|224359	COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane].	1.34793e-63

>NZ_CP011484.1|WP_064436778.1|1176700_1178677_-|excinuclease-ABC-subunit-B
MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRTYKSFLLKLVEMGYSRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVMLYAASQFAVGSERLNLAVKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGLLDPKFEVRDSDKQVQDLFDEIKSVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHSEIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIKIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQLRTL
>NZ_CP011484.1|WP_064436777.1|1175845_1176676_+|outer-membrane-protein
MKRALCLILGLYALNAESFKDVLTKGDYTFFNKKVVSPIKRYADRSAFYLGLGYQLGSIQHNSSNLNLFQRFNKSQIIFSDSLSPVFKNSYVSNGLGVQVGYKWVGKHEETKWFGFRWGLFYDLSASLYGSQESQSVIISTYGTYMDLLLNAYNGDKFFAGFNLGVAFAGVYDRLSDALLYQTLLQNTFGGKVNSNGFQFLVDLGVRLGNKHNQFGFGIKIPTYYFNHYYSMNNISNNSENVLKVLRFLEYGINSLLYQVDFRRNYSVYFNYTYSF
>NZ_CP011484.1|WP_064436776.1|1174225_1175548_+|adenylosuccinate-lyase
MLERYANEEMKALWNEQTKFETYLEVEKAVVRAWNKLGQIQDSDCEKICLKAAFNLERIKEIEKTTKHDLIAFTTCVAESLGEESRFFHYGITSSDCIDTAMALLMTKSLKLIQKSVQNLYETLKNRALEHQDTLMVGRSHGVFGEPITFGLVLALFADEIKRHLKALDLTMEFISVGAISGAMGNFAHAPLELEELACGFLGLKTANISNQVIQRDRYARLACDLALLASSCEKIAVNIRHLQRSEVYEVEEAFSTGQKGSSAMPHKRNPILSENITGLCRVIRSFTTPMLENVALWHERDMSHSSVERFALPDLFITSDFMLSRLNGVIENLVVYPKNMLKNLALSGGLVFSQRVLLELPKKGLSREESYSIVQENAMKIWEVLQQGAFKNADENLFLNALLNDERLKKYLNESEIRACFDYSYYTKNVGAIFKRVFG
>NZ_CP011484.1|WP_000238141.1|1173168_1174113_+|pyruvate-ferredoxin-oxidoreductase-subunit-beta
MVKEVKTLKGFSQSAEKFQGSHLLCPGCGHGIIVREVLNAVDGPIVLGNSTGCLEVCSAVYPHTSWDVPWIHIGFENGSTAISGVEAMYKALVNKGRYQGQKPKFVAFGGDGASYDIGFQFISGCMERGHDMTYICLDNENYANTGGQRSGSTPLGASTSTTPAGSVSFGKKEKKKDIVNIMASHGVPYVAQLSPNKWKDMNKKIKTALDTEGPCFINALSPCTTEWKFDSNKTIELADMAVDSLMFPLFEIFNGRELKITYRPRNIIPVRDYLAAQKRFKHLFKKENEHIIEELQKDVNERWEYLQRREEAKV
>NZ_CP011484.1|WP_001129863.1|1171932_1173156_+|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha
MAKSIELQEIEVWDGNTASSNALRQAQIDVIAAYPITPSTPIVQNYGSFKDNGYVDGEFVLVESEHAAMSACVGAAAAGGRVSTATSSQGLALMVEVLYQASGMRLPIVLNLVNRALAAPLNIHGDHSDMYLSRDSGWISLCTCNPQEAYDFTLMAFRIAEHQKVRVPTIVNQDGFLCSHTVQNVRPLSDAVAYQFVGEYQTKHSLLDFDKPVSYGAQAEEEWHYEHKAQLHHAIMSASSVIEEVFNDFAKLTGRQYHLTKTFQLEDAEIAIFALGTTYESAIVAAKEMRKKGIKAGVATIHSLRPFPYERLGQDLKNLKALAILDKSSPAGAMGAMFNEVTSAVYQTQGTKHPVVSNYIYGLGERDMTIAHLCEIFEEINEDALKGTLTHPTQQFVGLRGPKMSFF
>NZ_CP011484.1|WP_000656179.1|1171530_1171923_+|4Fe-4S-dicluster-domain-containing-protein
MKDWNEFEMGAVLFPFEKNAQSEMEKHNDERHYTEQSYFTTSVAHWRVAKPVHNNTICINCFNCWVYCPDAAILSREGKLKGVDYSHCKGCGVCVDVCPTNPKSLWMFEEQIEPATALTQWPQKQEKKKS
>NZ_CP011484.1|WP_000486470.1|1170954_1171515_+|pyruvate-flavodoxin-oxidoreductase-subunit-gamma
MFQIRWHARAGQGAITGAKGLADVISKTGKEVQAFASYGSAKRGAAMMAYNRVDDEPILNHERFMQPDYVLVIDPGLVFIENIFANEKEDTTYIITSYLSKEELFEKKPELKTRKVFLVDCLKISMETLKRPIPNTPMLGALMKVSGMLEIGAFKEAFKKVLGKKLTQEVIDANMLAIQRAYEEVQ
>NZ_CP011484.1|WP_064436775.1|1170020_1170683_-|outer-membrane-protein
MNKTTIKILMGMALLSSLQAAETELDEKSKKPKFADRNAFYLGVGYQLSAINTSFSTSSIDKSYFMTGNGFGVVLGGKFVAKTQAVEHVGFRYGLFYDQTFSSHKSYISTYGLEFSGLWDAFNSPKMFLGLEFGLGIAGATYMPGGAMHGIIAQYLGKENSLFQLLVKVGFRFGFFHNEITFGLKFPVIPNKKTEIVDGLSATALWQRLPVAYFNYIYNF
>NZ_CP011484.1|WP_064436774.1|1168706_1170014_+|hypothetical-protein
MIFLKKSLYVLLISSFLIAPLMKAASFVYDLKFMSFNFNLVAPNNNPYWNSLTKMQARLMPQIGVQLDKRQALMFGAWFIQNLHTHYSYFPYSWGVTMYYQYIGKNLRFFLGIVPRSYQIGHYPLSAFKKLFWFIDPTFRGGAFQFKPAYDPNRWWNGWFEGVVDWYGGRNWNNQPKKKNYDFDQFLYFVSSEFQFLKGYLGLGGQLVIFHNASPHSMGDNYPYGGNSYLKPGDATPQWPNGYPYFSQKNNPQGGEIGKYSNPTILDRVYYHAYLKADFKNLMPYMDNIFMTFGTQSSQTHYCVRYASECKNAQFYNSFGGEFYAQAQYKGFGIFNRYYFSNKPQMHFYATYGQSLYTGLPWYRAPNFDMIGLYYLYKNKWLSVRADAFFSFVGGGDGYHLYGKGGKWFVMYQQFLTLTIDTRELIDFVKSKTSK
>NZ_CP011484.1|WP_080471266.1|1167561_1168638_-|glycosyltransferase-family-8-protein
MAKANKKIRYTLHALVVGLNEEDKAKLNQITEPFKEFAALEVKDIEPFLDAIPNPFDEDFTKRFSKMVLVKYFLADLFPKYSKMVWSDVDVIFCNEFSADFLNIEENDENYFYGVLEVEKHHMMEGFLFCNLDYQRKKNFTLRMHDLLKGNEAKGELDFTKWCWPNMKALGIEYCVFPWYYTIKDFSNAYLNENYKKTILEARKNPIIIHYDAWWGAVKPWDYPFGLKADLWLNALAKTPFMNDYTKKMHTNESFYTTKMANQHYFSSTKSSKEILFKTPYLFFKSYLFVVFKERKIHLRIFNVTCGLVKRSFKKLIYWVFFMPKALTKRVVSKILRVLGLHGIVKKILIQLKLLRKG
>NZ_CP011484.1|WP_064436780.1|1179459_1181085_-|DUF3519-domain-containing-protein
MKLPKALNEATAGAALKYHLKRALERSHTISAFTKNLELSAKNSKFSNATMRKIEEITQGVKRAKENIIKQEKALQDAITPLKQFGKNYAEFVLKPKEALEKLLQEKNGQVAGAAFRDDLGGIDFVWGTPKTKDSNGYGLAHILEKREKQYTRLGLNAEQIKERTDELLKSIPEVIENGMLFKDDLGRVGVELNHIKVGLKNIWDNNNLNNHFVVTSYERDEKVLRELETKPPLSNDYKDNSNYSVLNLNENNSTKESLTIQEPPLSILEKSQLEKQKKLESERLAKAEKERAQKIKDKEEKKLKAEIRAQKNATMGKSELDREILKSENIPYKELENVPNNSFLEVFDNAYKNLDREQFKAFREMFANNSANFHNLNNDTTMINFTISPYLTDALDTTAKMLESGNRSDNFSKLVHDIDYLVNSTDENGMNAFIKENKDAYNSVISELLGSSFARFLRLENPSAQFYEFLVKAKDRMIENAADIFAGKSKPISQINIFDFIKYSIESGKSSKESRELLDLLPELEKKFNAHEKFLQGDKK
>NZ_CP011484.1|WP_064436781.1|1181053_1181254_+|hypothetical-protein
MASFRALGNLIPKMRSGALRYKVPSVNLVHWYFNAPLKVVAKPWLKFFVIAGFRLSAILASFLKSL
>NZ_CP011484.1|WP_064436783.1|1181498_1182269_-|HP1117-family-Sel1-like-repeat-protein
MGHASKLALKICLVGLCLFSTLGAEHLEQKGNYIYKGEEAYNNKEYERAASFYKSAIKNGESLAYVLLGIMYENGRGVPKDYKKAVEYFQKAVDNDIPRGYNNLGVMYKEGRGVPKDEKKAVEYFRIATEKGYTNAYINLGIMYMEGSGVPSNYAKATECFRKAMYKGNVEAYILLGDIYYSGNDQLGIEPDKDKAVVYYKMAADMSSSRAYEGLSESYQYGLGVEKDKKKAEEYMQKACDFDIDKNCKKKNTSSR
>NZ_CP011484.1|WP_001927726.1|1182511_1184215_-|gamma-glutamyltransferase
MRRSFLKTIGLGVIALSLGLLSPLSSASYPPIKNTKVGLALSSHPLATEIGQKVLEEGGNAIDAAVAIGFALAVVHPAAGNIGGGGFAVIHLANGENVALDFREKAPLKATKNMFLDKQGNVVPKLSEDGYLAAGVPGTVAGMEAMLKKYGTKKLSQLIDPAIKLAENGYAISQRQAETLKEARERFLKYSSSKKYFFKKGHLDYQEGDLFVQKDLAKTLNQIKTLGAKGFYQGQVAELIEKDMKKNGGIITKEDLASYNVKWRKPVIGSYRGYKIISMSPPSSGGTHLIQILNVMENADLSTLGYGASKNIHIAAEAMRQAYADRSVYMGDADFVSVPVDKLINKAYAKKIFDAIQPDTVTPSSQIKPGMGQLHEGSNTTHYSVADRWGNAVSVTYTINASYGSAASIDGAGFLLNNEMDDFSIKPGNPNLYGLVGGDANAIEANKRPLSSMSPTIVLKNNKVFLVVGSPGGSRIITTVLQVISNVIDYNMNISEAVSAPRFHMQWLPDELRIEKFGMPADVKDNLTKMGYQIVTKPVMGDVNAIQVLPKTKGSVFYGSTDPRKEF
>NZ_CP011484.1|WP_064436784.1|1184402_1186223_-|flagellar-hook-associated-protein-FlgK
MGGILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVDVEAIERVHDEFVFARYTKVNYENTYYDTEFSHLKEASAYFPDIDEASLFTDLQDYFNSWKELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIAEINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKLTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGLFVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTAIRPWLAPINGNFDVANMMQQLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKQSMLETIKKEQLSISQVSVDEEMLNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ
>NZ_CP011484.1|WP_064436785.1|1186224_1186659_-|hypothetical-protein
MVVLHSHLENALNQLKELIDLTECDIRDIKLAKHAEIFERNHQKQLAIQAFEQEKANIDAQMLSLKNQFPNKEMSELLDEQTSDFLNQMRESLLVLKEKNLIYSRMAFAVSEFYSSLIQQIIPHDTCDYKGSRHVGSHFLRVQA
>NZ_CP011484.1|WP_064437088.1|1186790_1187729_-|DNA-cytosine-methyltransferase
MDFCSGIGGGRLGLERCHLKCVGHAEINHEALRTYELFFKDTHNFGDLMRINPNDLPDFDALISGFPCQAFSINGKRKGLEDERGTIIYGLIRILKVKQPKCFLLENVKGLIHHKQQETFKTIIKALQEAGYTTHYQMLNSADFQLAQKRERLYIVGFRKDLKHPFNFPLGLANDYCFKDFLDADNECYLDVSNAIFQRYLRNPYNHNRVSLENILTLENAVLDTRQSDLRLYFNVFPTLRTSRHGLFYTQKGKIKRLNAIESLLLQGFPRDLIAKIKNNPNFKKSHLLSQAGNAMSVNVITAIAKQMLKAI
>NZ_CP011484.1|WP_080471267.1|1187890_1188121_-|flagellar-biosynthesis-anti-sigma-factor-FlgM
MDIRLKDFTMINAVSSLAPVQSLGNYKRVEKNEKVENNEAALDRVAEIKQAIENNQYKINLHETSHKMAQDLLGIS
>NZ_CP011484.1|WP_001088951.1|1188162_1188369_-|hypothetical-protein
MNSSNLKNWLFPTICFFLFCYILIFLIFFMFKNLQSQSFGSVAETGKKPITTTKKFGKELQKQISKIH
>NZ_CP011484.1|WP_001179281.1|1188400_1188958_-|peptidylprolyl-isomerase
MQNHDLESIKQAALIEYEVREQGSSDVLDSNISKEPLEFIIGANQIIVGLEKAVLKAQIGEWEEVVIAPEEAYGVYESGYLQEVPRDQFEGIELEKGMSVFGQTEDNQTIQATIKDFSNTHVMVDYNHPLAGKTLAFRFKVLGFREVSEEEILASHHDSATGCCGGHGGHGRKKGGGCGCSCSHG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011484_2	2.2\|994746\|27\|NZ_CP011484\|CRISPRCasFinder	994746-994772	27	MT741944	Acinetobacter phage vB_AbaP_APK81, complete genome	9819-9845	4	0.852
NZ_CP011484_2	2.1\|994689\|30\|NZ_CP011484\|CRISPRCasFinder	994689-994718	30	U88974	Streptococcus thermophilus temperate bacteriophage O1205, complete genome	23169-23198	7	0.767
NZ_CP011484_2	2.1\|994689\|30\|NZ_CP011484\|CRISPRCasFinder	994689-994718	30	NC_004303	Streptococcus phage O1205, complete genome	23169-23198	7	0.767
NZ_CP011484_2	2.1\|994689\|30\|NZ_CP011484\|CRISPRCasFinder	994689-994718	30	MK448589	Streptococcus satellite phage Javan632, complete genome	4593-4622	7	0.767

1. spacer 2.2|994746|27|NZ_CP011484|CRISPRCasFinder matches to MT741944 (Acinetobacter phage vB_AbaP_APK81, complete genome) position: , mismatch: 4, identity: 0.852

gacagcgtaagctttaataataacacc	CRISPR spacer
tacagtgtaagctttagtaataacaca	Protospacer
 ****.**********.*********

2. spacer 2.1|994689|30|NZ_CP011484|CRISPRCasFinder matches to U88974 (Streptococcus thermophilus temperate bacteriophage O1205, complete genome) position: , mismatch: 7, identity: 0.767

agcgcccaatccacttttgaaaacagcagt	CRISPR spacer
agcgcccaaaacacttttgaaaactgatcc	Protospacer
*********  ************* *   .

3. spacer 2.1|994689|30|NZ_CP011484|CRISPRCasFinder matches to NC_004303 (Streptococcus phage O1205, complete genome) position: , mismatch: 7, identity: 0.767

agcgcccaatccacttttgaaaacagcagt	CRISPR spacer
agcgcccaaaacacttttgaaaactgatcc	Protospacer
*********  ************* *   .

4. spacer 2.1|994689|30|NZ_CP011484|CRISPRCasFinder matches to MK448589 (Streptococcus satellite phage Javan632, complete genome) position: , mismatch: 7, identity: 0.767

agcgc-ccaatccacttttgaaaacagcagt	CRISPR spacer
-ccgtaccaatcgccttttgaaaacagcaag	Protospacer
  **. ******  ***************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

228703 : 238711

Streptococcus_phage(42.86%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064436256.1\|228703_229948_+	DNA cytosine methyltransferase	M1PSQ0	Streptococcus_phage	6.0e-29	29.4
WP_064436257.1\|229934_230705_+	hypothetical protein	S0A2X1	Cellulophaga_phage	6.1e-56	48.5
WP_064436258.1\|230679_232023_+	McrB family protein	M1NSM1	Streptococcus_phage	1.2e-86	42.0
WP_064436259.1\|232015_233236_+	LlaJI family restriction endonuclease	Q6DMW8	Streptococcus_phage	5.1e-65	36.1
WP_064436260.1\|233309_234332_-	pseudaminic acid synthase	A0A1B1IVE2	uncultured_Mediterranean_phage	4.5e-30	34.1
WP_000588246.1\|234334_234976_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.7e-16	28.7
WP_033776981.1\|234978_236250_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA
WP_080230845.1\|236500_237196_+	CvpA family protein	NA	NA	NA	NA
WP_064436261.1\|237205_238711_+\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	7.9e-92	40.1

DBSCAN-SWA_2

674026 : 682294

Synechococcus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064436485.1\|674026_675997_-	DNA ligase (NAD(+)) LigA	A0A0K2QQN8	Ralstonia_phage	4.5e-95	33.4
WP_064436486.1\|676068_677010_+	chemotaxis protein CheV	Q56AR1	Bacillus_thuringiensis_phage	2.4e-22	28.9
WP_064436487.1\|677044_678778_+\|tRNA	aspartate--tRNA ligase	A0A1V0SIS0	Klosneuvirus	2.4e-15	21.4
WP_064436488.1\|678794_679370_+	adenylate kinase	NA	NA	NA	NA
WP_064436489.1\|679390_680389_+	glycosyltransferase family 25 protein	A0A1D8KNF8	Synechococcus_phage	1.5e-09	26.3
WP_064436490.1\|680446_681721_+	lipopolysaccharide biosynthesis protein	A0A1D8KNF8	Synechococcus_phage	6.0e-08	26.0
WP_001047002.1\|681772_682294_+	inorganic diphosphatase	A0A1B1ISK6	uncultured_Mediterranean_phage	1.9e-37	46.4

DBSCAN-SWA_3

1566096 : 1656586

Helicobacter_phage(26.67%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064437006.1\|1566096_1568859_+\|tRNA	isoleucine--tRNA ligase	A0A1V0SJ93	Klosneuvirus	5.4e-70	26.6
WP_033747649.1\|1568875_1569790_+	type II/IV secretion system ATPase subunit	NA	NA	NA	NA
WP_064437007.1\|1569790_1571095_+	flagellar protein export ATPase FliI	NA	NA	NA	NA
WP_064437008.1\|1571105_1571372_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA
WP_064437009.1\|1571375_1572155_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
WP_064437010.1\|1572199_1573054_-	phosphoethanolamine transferase	NA	NA	NA	NA
WP_064437011.1\|1573035_1573872_-	phosphoethanolamine transferase	NA	NA	NA	NA
WP_064437012.1\|1573881_1574985_-	glycosyltransferase family 8 protein	NA	NA	NA	NA
WP_080471298.1\|1574985_1575882_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_064437014.1\|1575889_1576231_-	ribosome silencing factor	NA	NA	NA	NA
WP_000187324.1\|1576289_1576736_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	1.8e-39	58.0
WP_080471299.1\|1580033_1581770_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_064437016.1\|1585964_1586843_-	YihY family inner membrane protein	NA	NA	NA	NA
WP_001155611.1\|1586842_1587691_-	biotin synthase	NA	NA	NA	NA
WP_080471330.1\|1587816_1590429_+	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_064437018.1\|1590422_1592219_+	site-specific DNA-methyltransferase	A0A1B0XWD0	Campylobacter_phage	1.0e-69	45.2
WP_080471331.1\|1592667_1593345_+	DNA/RNA non-specific endonuclease	NA	NA	NA	NA
WP_064437020.1\|1593674_1594502_-	prephenate dehydrogenase	NA	NA	NA	NA
WP_064437021.1\|1594503_1596993_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.2e-137	38.2
WP_001237295.1\|1597035_1597698_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_064437022.1\|1597688_1597889_-	hypothetical protein	NA	NA	NA	NA
WP_033599814.1\|1598110_1598500_+	flagellar assembly protein FliW	NA	NA	NA	NA
WP_064437023.1\|1598682_1599162_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_064437024.1\|1599164_1599977_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_064437025.1\|1599978_1601325_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.4e-108	47.8
WP_000577745.1\|1601367_1602411_+	rod shape-determining protein	NA	NA	NA	NA
WP_064437026.1\|1602414_1603161_+	rod shape-determining protein MreC	NA	NA	NA	NA
WP_064437027.1\|1603215_1606119_-	restriction endonuclease subunit R	NA	NA	NA	NA
WP_064437028.1\|1606129_1608589_-	site-specific DNA-methyltransferase	A0A2R3ZYF2	Campylobacter_phage	1.5e-42	35.9
WP_064437029.1\|1608836_1610114_+	DUF1887 family protein	A0A0B5IWU9	Pandoravirus	5.6e-14	31.4
WP_080471301.1\|1610782_1611469_-	DNA cytosine methyltransferase	A7XXH6	Thermus_virus	3.0e-14	28.3
WP_080471302.1\|1614118_1614547_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	1.4e-70	96.2
WP_080471303.1\|1614545_1615616_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1S5RHD5	Helicobacter_phage	5.3e-191	93.3
WP_064437034.1\|1616941_1618270_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA
WP_064437035.1\|1618362_1619646_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1S5RG77	Helicobacter_phage	6.6e-196	95.1
WP_064437036.1\|1619715_1620144_+\|transposase	IS200/IS605 family transposase	A0A1S5RG71	Helicobacter_phage	1.9e-75	97.9
WP_064437037.1\|1620227_1621133_-	hypothetical protein	NA	NA	NA	NA
WP_000394655.1\|1622480_1622765_-	hypothetical protein	NA	NA	NA	NA
WP_064437038.1\|1622843_1623500_-	ParA family protein	A2I303	Vibrio_virus	9.3e-05	22.9
WP_080471304.1\|1626782_1627046_+	hypothetical protein	NA	NA	NA	NA
WP_080471305.1\|1629095_1629611_-	hypothetical protein	NA	NA	NA	NA
WP_033602074.1\|1631422_1632559_+	hypothetical protein	NA	NA	NA	NA
WP_064437041.1\|1632555_1634211_+	type VI secretion protein	NA	NA	NA	NA
WP_064437042.1\|1637644_1638622_+	hypothetical protein	NA	NA	NA	NA
WP_001278752.1\|1638638_1638914_+	hypothetical protein	NA	NA	NA	NA
WP_064437043.1\|1638918_1639863_+	conjugal transfer protein TrbB	NA	NA	NA	NA
WP_064437044.1\|1639859_1640378_+	hypothetical protein	NA	NA	NA	NA
WP_064437045.1\|1640374_1642618_+	TraM recognition domain-containing protein	NA	NA	NA	NA
WP_064437046.1\|1642638_1644699_+	type IA DNA topoisomerase	A0A1V0SB35	Catovirus	1.6e-58	28.9
WP_001955992.1\|1644738_1645224_+	hypothetical protein	NA	NA	NA	NA
WP_064437047.1\|1645193_1645997_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_064437048.1\|1646070_1646736_-	hypothetical protein	NA	NA	NA	NA
WP_000365702.1\|1646713_1647091_-	hypothetical protein	NA	NA	NA	NA
WP_000150803.1\|1647137_1647806_-	ParA family protein	A0A222YXS3	Escherichia_phage	9.1e-24	33.5
WP_064437049.1\|1648606_1649659_+	DUF1738 domain-containing protein	NA	NA	NA	NA
WP_064437050.1\|1649658_1651695_+	hypothetical protein	NA	NA	NA	NA
WP_000120427.1\|1651704_1653138_+	hypothetical protein	NA	NA	NA	NA
WP_064437051.1\|1653134_1654397_+	P-type conjugative transfer protein TrbL	NA	NA	NA	NA
WP_064437052.1\|1654393_1655518_+	hypothetical protein	NA	NA	NA	NA
WP_033600270.1\|1655569_1656586_+\|transposase	IS1595-like element ISHp1 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011484

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection