CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011485	Helicobacter pylori strain ausabrJ05, complete genome	5 crisprs	cas4,cas2,DEDDh	0	0	0	0

Cas Category Instructions

Results visualization

1. NZ_CP011485

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011485_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011485_1

77032-77112

Orphan

Consensus_repeat	Method
ACCGCTAGTAGCGAACCAACTCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011485_1

>merge|NZ_CP011485|1|77032-77112|CRISPRCasFinder
ACCGCTAGTAGCGAACCAACTCCATCAACCCCACCAACTAAAGAGGAGCCAAAAAAAACCGCTAGTAGCGAACCAACTCCA

>NZ_CP011485|1|1|77032-77112|CRISPRCasFinder
ACCGCTAGTAGCGAACCAACTCCA	TCAACCCCACCAACTAAAGAGGAGCCAAAAAAA
ACCGCTAGTAGCGAACCAACTCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011485.1\|WP_064437166.1\|85100_86465_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366353
NZ_CP011485.1\|WP_024750620.1\|67357_67957_-\|urease-accessory-protein-UreG	unknown	unknown	gnl\|CDD\|129208
NZ_CP011485.1\|WP_064437157.1\|75135_76194_+\|peptide-chain-release-factor-1	unknown	unknown	gnl\|CDD\|234801
NZ_CP011485.1\|WP_064437162.1\|80381_82403_-\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP011485.1\|WP_064437161.1\|78488_80255_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|178752
NZ_CP011485.1\|WP_064437165.1\|83694_85047_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|240393
NZ_CP011485.1\|WP_080471582.1\|67985_68759_-\|urease-accessory-protein-UreF	unknown	unknown	gnl\|CDD\|223900
NZ_CP011485.1\|WP_064437154.1\|70064_71774_-\|urease-subunit-beta	unknown	unknown	gnl\|CDD\|184438
NZ_CP011485.1\|WP_033603474.1\|82546_82936_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NZ_CP011485.1\|WP_001273627.1\|74741_75011_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NZ_CP011485.1\|WP_064437167.1\|86485_88501_-\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|235549
NZ_CP011485.1\|WP_064437168.1\|88785_89481_-\|aminodeoxyfutalosine-nucleosidase	unknown	unknown	gnl\|CDD\|180148
NZ_CP011485.1\|WP_064437163.1\|82932_83358_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NZ_CP011485.1\|WP_064437153.1\|69284_69872_-\|acid-activated-urea-channel	unknown	unknown	gnl\|CDD\|259831
NZ_CP011485.1\|WP_064437158.1\|76594_76852_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011485.1\|WP_064437156.1\|73315_74653_-\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|184621
NZ_CP011485.1\|WP_064437164.1\|83499_83688_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340117
NZ_CP011485.1\|WP_064437152.1\|68770_69283_-\|urease-accessory-protein-UreE	unknown	unknown	gnl\|CDD\|237322
NZ_CP011485.1\|WP_064437169.1\|89491_90421_-\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|272922
NZ_CP011485.1\|WP_064437155.1\|72848_73322_-\|lipoprotein-signal-peptidase	unknown	unknown	gnl\|CDD\|234739

Protein	Function_ID	Function_description	E-value
NZ_CP011485.1\|WP_064437166.1\|85100_86465_-\|hypothetical-protein	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	3.95326e-18
NZ_CP011485.1\|WP_024750620.1\|67357_67957_-\|urease-accessory-protein-UreG	gnl\|CDD\|129208	TIGR00101, Urease_accessory_protein_UreG, urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. [Central intermediary metabolism, Nitrogen metabolism].	6.11121e-140
NZ_CP011485.1\|WP_064437157.1\|75135_76194_+\|peptide-chain-release-factor-1	gnl\|CDD\|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	0
NZ_CP011485.1\|WP_064437162.1\|80381_82403_-\|chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	3.67624e-35
NZ_CP011485.1\|WP_064437161.1\|78488_80255_+\|hypothetical-protein	gnl\|CDD\|178752	PLN03213, PLN03213, repressor of silencing 3; Provisional.	0.000369145
NZ_CP011485.1\|WP_064437165.1\|83694_85047_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|240393	PTZ00383, PTZ00383, malate:quinone oxidoreductase; Provisional.	3.433e-173
NZ_CP011485.1\|WP_080471582.1\|67985_68759_-\|urease-accessory-protein-UreF	gnl\|CDD\|223900	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones].	9.35261e-90
NZ_CP011485.1\|WP_064437154.1\|70064_71774_-\|urease-subunit-beta	gnl\|CDD\|184438	PRK13985, ureB, urease subunit alpha.	0
NZ_CP011485.1\|WP_033603474.1\|82546_82936_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	1.14185e-67
NZ_CP011485.1\|WP_001273627.1\|74741_75011_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	9.45572e-24
NZ_CP011485.1\|WP_064437167.1\|86485_88501_-\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|235549	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.	0
NZ_CP011485.1\|WP_064437168.1\|88785_89481_-\|aminodeoxyfutalosine-nucleosidase	gnl\|CDD\|180148	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase.	6.58858e-114
NZ_CP011485.1\|WP_064437153.1\|69284_69872_-\|acid-activated-urea-channel	gnl\|CDD\|259831	cd13404, UreI_AmiS_like, UreI/AmiS family, proton-gated urea channel and putative amide transporters. This family includes UreI proton-gated urea channels as well as putative amide transporters (AmiS of the amidase gene cluster). Helicobacter pylori UreI (HpUreI), a proton-gated inner membrane urea channel opens in acidic pH to allow urea influx to the cytoplasm. There urea is metabolized, producing NH3 and CO2, leading to buffering of the periplasm. This action is essential for the survival of H. pylori in the stomach, and has been identified as a mechanism that could be clinically targeted to prevent various illnesses associated with infection by H. pylori. UreI and the related amide channels (AmiS) appear to function as hexamers, and have 6 predicted transmembrane segments. UreI has also been shown have a lipid "plug" in the center of the hexamer. Urea enters at the periplasmic opening of UreI and must pass 2 constriction sites, one on each side of a conserved Glu (Glu 177, H. pylori numbering), to reach the cytoplasm. Urea/thiourea selectivity is diminished by mutation of a conserved Trp to Ala or Phe in constriction site 2 (cytoplasmic). Channel functionality is greatly diminished by mutation of a conserved Trp in constriction site 1 (periplasmic) and a conserved Tyr in constriction site 2, and to a lesser extent a conserved Phe in site 1. In the cytoplasm, urease hydrolyzes urea to form ammonia and carbamate, which decomposes to carbonic acid. UreI is fully open at pH 5.0 to facilitate urea influx, but closes at neutral pH, preventing over-alkalization. Glu 177 (H. pylori numbering) is present in urea channel proteins, but absent in the related amide channels, suggesting that it plays a role in urea specificity.	2.67178e-74
NZ_CP011485.1\|WP_064437163.1\|82932_83358_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	1.05753e-77
NZ_CP011485.1\|WP_064437156.1\|73315_74653_-\|phosphoglucosamine-mutase	gnl\|CDD\|184621	PRK14324, glmM, phosphoglucosamine mutase; Provisional.	0
NZ_CP011485.1\|WP_064437164.1\|83499_83688_-\|hypothetical-protein	gnl\|CDD\|340117	pfam17402, DUF5408, Family of unknown function (DUF5408). This is a family of unknown function found in Helicobacteraceae. Family members are predicted to contain one trans-membrane region.	1.87888e-07
NZ_CP011485.1\|WP_064437152.1\|68770_69283_-\|urease-accessory-protein-UreE	gnl\|CDD\|237322	PRK13261, ureE, urease accessory protein UreE; Provisional.	2.63525e-47
NZ_CP011485.1\|WP_064437169.1\|89491_90421_-\|ACP-S-malonyltransferase	gnl\|CDD\|272922	TIGR00128, Malonyl_CoA-acyl_carrier_protein_transacylase, malonyl CoA-acyl carrier protein transacylase. This enzyme of fatty acid biosynthesis transfers the malonyl moeity from coenzyme A to acyl-carrier protein. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension. [Fatty acid and phospholipid metabolism, Biosynthesis].	9.77139e-149
NZ_CP011485.1\|WP_064437155.1\|72848_73322_-\|lipoprotein-signal-peptidase	gnl\|CDD\|234739	PRK00376, lspA, lipoprotein signal peptidase.	1.47337e-43

>NZ_CP011485.1|WP_064437158.1|76594_76852_+|hypothetical-protein
MKKVFLGMALAFSVSMAEKSGAFLGGGFQYSNLENQNTTRTLGANNNTPINTSMFGNNQTAPAPQTQSASKPDTQINPSASWMKK
>NZ_CP011485.1|WP_064437157.1|75135_76194_+|peptide-chain-release-factor-1
MSILAEKLSSILKRYDELTALLSSSEVISDIKKLTELSKEQSSIEEISIASKEYLSVLENIKENKELLEDKELSELAKEELKILEIKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQFE
>NZ_CP011485.1|WP_001273627.1|74741_75011_+|30S-ribosomal-protein-S20
MANHKSAEKRIRQTIKRTERNRFYKTKVKNIIKAVREAVAINDVAKAQERLKIANKELHKFVSKGILKKNTASRKVSRLNASVKKIALA
>NZ_CP011485.1|WP_064437156.1|73315_74653_-|phosphoglucosamine-mutase
MKIFGTDGVRGKAGVKLTPMFVMRLGIAAGLYFKKHSKTNKILIGKDTRKSGYMVENALVSALTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNPFEDNGIKFFNSYGYKLKEEEEKAIEEIFHDEELLHSSYKVGESLGSAKRIDDVIGRYIVHLKHSFPKHLNLQSLRIVLDTANGAAYKVAPVVFSELGADVLVINDEPNGCNINEQCGALHPNQLSQEVKKYRADLGFAFDGDADRLVVVDNLGNIVHGDKLLGVLGVYQKSKNALSSQAVVATNMSNLALKEYLKSKDLELKHCAIGDKFVSECMRLNKANFGGEQSGHIIFSDYAKTGDGLVCALQVSALVLESKQVSSVALNPFELYPQSLVNLNIQQKPPLESLKGYSALLKELDKLEIRHLIRYSGTENKLRILLEAKDEKLLESKMQELKEFFEGHLC
>NZ_CP011485.1|WP_064437155.1|72848_73322_-|lipoprotein-signal-peptidase
MLKTTKKSLLIFIGVFFLIFGVDQAIKYAILEGFRYESLIIDIVLVFNKGVAFSLLSFLEGGLKYLQILLILGLFVFLMRQKELFKNHAIEFGMVFGAGVSNVLDRFVHGGVVDYVYYHYGFDFAIFNFADVMIDVGVGVLLLRQFFFKQKQNKIKA
>NZ_CP011485.1|WP_064437154.1|70064_71774_-|urease-subunit-beta
MKKISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNNPSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKYDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTNPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSSDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAHHGKAKYDANITFVSQAAYEKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNPETYHVFVDGKEVTSKPANKVSLAQLFSIF
>NZ_CP011485.1|WP_064437153.1|69284_69872_-|acid-activated-urea-channel
MLGLVLLYVGIVLISNGICGLSKVDPKSTAVMNFFVGGLSIVCNVVVIIYSALHPTAPVEGAEDIAQVSHHLTSFYGPATGLLFGFTYLYAAINHTFGLDWRPYSWFSLFVAINTVPAAILSHYSDMLDDHKVLGITEGDWWAIIWLAWGVLWLTAFIENILKIPLGKFTPWLAIIEGILTAWIPAWLLFIQHWV
>NZ_CP011485.1|WP_064437152.1|68770_69283_-|urease-accessory-protein-UreE
MIIERLVGNLRDLNPLDFSVDYVDLEWFETRKKIARFKTRKGKDIAIRLKDAPKLGLSQGDILFKEEKEIIAVNILDSEVIHIQAKSVAEVAKICYEIGNRHAALYYGESQFEFKTPFEKPTLALLEKLGVQNRVLSSKLDSKERLTVSMPHSEPNFKVSLASDFKVVIK
>NZ_CP011485.1|WP_080471582.1|67985_68759_-|urease-accessory-protein-UreF
MNKGKSVKSTKKSVGMLSKTPKTDNNADSHHVDNEFLILQVNDAVFPIGSYTHSFGLETYIQQKKVINKESALEYLKANLSSQFLYTEMLSLKLTYESTLQQDLKKILGVEEIITLSTSPMELRLANQKLGNRFIKTLQAMNELDMGEFFNAYAQNTKDPTHATSYGVFVASLNIELKKALRHYLYAQTSNMVINCVKSVPLSQNDGQKILLSLQSPFNQLIEKTLELDESYLCAASVQNDIKAMQHESLYSRLYMS
>NZ_CP011485.1|WP_024750620.1|67357_67957_-|urease-accessory-protein-UreG
MVKIGVCGPVGSGKTALIEALTRHMSKDYDMAVITNDIYTKEDAEFMCKNSVMPRDRIIGVETGGCPHTAIREDASMNLEAVEEMHGRFPDLELLLIESGGDNLSATFNPELADFTIFVIDVAEGDKIPRKGGPGITRSDLLVINKIDLAPYVGADLKVMERDSKKMRGEKPFIFTNIRAKEGLDDVIAWIKRNALLED
>NZ_CP011485.1|WP_064437161.1|78488_80255_+|hypothetical-protein
MKAIKILFMMTLSLNAISVNRALFDLKDLQLKGELTPKIVNFGGYQSSTREWGATALNYINAANGDAKKFSILVEKMRFGSGILGNLRAHARLRQALKLQKNLKYCLKIIARDSFYSYRTGIYIPLGISLKDQKTAQKMLADLSVVGAYLKKQQENEKAQSPYYRNNNYYNSYYSPYYGMYGMYGMGMYGMYGMGMYDFYDFYDGLYGFYPDMFFMMQVQDYLMLENYMYALDQEEILDHDASVNQLDTPTDDDRDDKDDKSLQQANLMSFYRDPKFSKGIQTNRLNSALVNLDNSRMLKDNSLFHTKAMPTKSVDAITSQAKELNHLVGQIKEMKQDGASPNKIDSVVNKAMEVRDKLDNNLNQLDNDLKDQKGLSSEQQAQVDKALDSVQQLSHSSDVVGNYLDGSLKIDGDDRDDLNDAINNPMQQPVQQTPANNMANTHANDSKDQGSNALINPNSATNTDDTHADDTHTDANTTNDTSTTDTSADDKDASGMNNTGDMNNTDTGNTDTGNTDDMSNANSGNDDTGNANDGMDNTNDMGDDMNNANDMNDDMGNSNDDMGDMGDMNDDMGGDMGDMGDMGDMGN
>NZ_CP011485.1|WP_064437162.1|80381_82403_-|chemotaxis-protein
MKSTRIGSKIVMMVCAVVIIISAVMGVIISYKVESVLQSQATELLQKKAQLVSFKIQGIMKRIFIGANTLEKFLSDENNAINDTLKKRMLSEFLLANPHVLLISAIYTNNNERAITAMKMDSKIAYPNTTLNENMVNQIHSLKDITRSDPYYKEVNGDKIYGMDITLPLTGKNQKIIGALNFFLNIDAFYTDVIGKKKSNTFLMGKDGRLLINPNREIQDKILSAINPDKRVAKAVEYYNQNEAGTLSYHSLSGNTETFLAIQPFDFFEEKGNNGNHWRWAIGKYVNKSLVFKEATNTKYIIITTLILGVLVLALLVFIIISNLITKRISRVNNTLNDFFNLLNNPKSNHAISLTPPSAYDEIGQMQASINENILKTQESIQADNKAIQNSIEVTNHVENGDFTQEIACVPKNKDLQALRNTINSIIQYFRNQIGANIEALNNALEHYKNLDFTHHIQNPKANMEKALNTLGQEISSMLKASLGFANALNHESKDLKTCVDNLTKTAHKQERSLKNTTQSLEEITNIITTIDSKSQEMISQGEDIKSVVDMIRDIADQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAERTQKSLSEIEANINILVQSIADNADSIKMQNKGVENIHNSINALQQDVQDNLTIANHSLAVSAKIDGISQDILEDVSKKKF
>NZ_CP011485.1|WP_033603474.1|82546_82936_-|30S-ribosomal-protein-S9
MRKIYATGKRKTAIAKVWLTPGKGELSINEQSLNQWLGGHEAIKMKVMQPLLLTKQEQSVDVKAVVFGGGYSAQAEALRHGISKALNAYDIAFRAILKPKGLLTRDSRVVERKKYGKRKARRSPQFSKR
>NZ_CP011485.1|WP_064437163.1|82932_83358_-|50S-ribosomal-protein-L13
MTKTAKVNDIVRDWVVLDAKDKVFGRLITEIAVLLRGKHRPFYTPNVDCGDFVVVINANEVKFSGMKLEDKEYFTHSGYFGSTKSKTLQEMLEKAPEKLYHLAVRGMLPKTKLGKAMIKKLKVYRDDKHPHTAQTSKKDAK
>NZ_CP011485.1|WP_064437164.1|83499_83688_-|hypothetical-protein
MPKEQEAREIAQKAVKIVFFLGLVVVLLMMINLYMLINQINASAQMSQQIKKIEERLNQEQK
>NZ_CP011485.1|WP_064437165.1|83694_85047_-|FAD-dependent-oxidoreductase
MSMEFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNYTPEKAKKVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYESFKEIFVGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYQKDWSTMNFAKLSENFVEEALKLKPNNQVFLNFKVKKIEKRNDTYALISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLGCLPVAGSFYFVPDLLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTALTMPKLERNKCWLKGISLELLKMDLNKDVFKIAFDLMSDKEIRNYVFKNMVFELPIIGKRKFLKDAQKIIPSLSLEDLEYAHGFGEVRPQVLDRTKRKLELGEKKICTHKGITFNMTPSPGATSCLQNALVDSQEIAAYLGESFELERFYRDLSPEELEN
>NZ_CP011485.1|WP_064437166.1|85100_86465_-|hypothetical-protein
MRYFLVVFLFLFVGCVKKDFTLKDLSLPQEASNYLASSQSGSNNIDPQALRENLKESYLKAWYSPWLDMKVKSNKKEVFWILKEMNKSTGYGEDLKPNAKAFNDELIKSMDIERYPSAKIRAVVVRDSDVRAVPTNKPYYLSQKGYPFDRYQNSLIFQGTPVLITHFNTDKTYAHIQSSFVYGWIKTNDLAYMCDKDIELLTNLKDYVMPIKDKIPLYTDYGGFYTDARVGELFALIPQSQKTPQKPQKKELKAYGFLRDAKGYATLQSVILEEKDFFVFPKAFTSENMAYFIDTMLGQKYGWGGLLGNRDCSAFTRDSFANFGILLPRNSYAQSRYANNYVDLSPMKAKEKEDYILKNATPFGTLIYLKGHIMLYLGAYNHQAIVAHSIWSVQTQKHFKTLSHKIGGVVITSLWLAEEHNGAFSKKKLLIDRVLGMSDLKDFVNKTSSPLNAN
>NZ_CP011485.1|WP_064437167.1|86485_88501_-|RNA-polymerase-sigma-factor-RpoD
MKKKANEEKAPKKAKTEAAQDNKAKESKIKESKIKESKIKESKIKETKAKELVPVKKLSFNEALEELFSDSLSDCVSYESIIQISAKVPTLAQVKKIKELCQKYQKKLVSSSEYAKKLNAIDKIKKTEEKQKVLDEELEDGYDFLKEKDFLEWSRSDSPVRMYLREMGDIKLLSKDEEIELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSFDDDDENSVSDSKKDDDSEEDEENEERKKVVSEKDKKRVEKVQESFKALDKAKKEWLKALESPVDEKEDELVRLLTLAHKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKELKRLEYKLPLFNDTLIANHKKILANITNMTKEDIIAQVPEATMVSVYMDLKKLFLTKEASEEGFDLAPNKLKEILEQIKRGKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKYIQENGKEPDLEWVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYLRI
>NZ_CP011485.1|WP_064437168.1|88785_89481_-|aminodeoxyfutalosine-nucleosidase
MVQKIGILGAMREEITPILELFGVGFEEISLGGNVFHKGVYRNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVAHQLVQHDVDLSAFNHPLGFIPESAIFIETSESLNALAKKVANEQHIALKEGVIASGDQFVHSKERKEFLVSEFKASAVEMEGASVALVCQKFGVPCCVLRSISDNADEEAGMSFDAFLEKSAQTSAKFLKSMVDKL
>NZ_CP011485.1|WP_064437169.1|89491_90421_-|ACP-S-malonyltransferase
MRYALLFPGQGSQCIGMGKSFYESHTLAKELFERASNVLKVDMKKTLFEENELLKESAYTQPAIYLVSYIAYQLLNKQVDGRLKPVFALGHSLGEVSAVSLSGALDFEKALKLTHQRGKMMQEACANKDVSMMVVLGVSEESLLSLCQRTKNVWCANFNGGMQVVLAGIKDDLKALEPTLKEMGAKRVVFLEMSVASHCPFLEPMVFKFQELLEKSLKDKFHFEIISNATNEAYHNKAKAVELLSLQLTQPVRYQDCVKSNNDRVDVFFELGCGSVLKGLNKRLSNKPTISVGDNKGLDEAIEFLEEFV

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Crispr_ID: NZ_CP011485_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011485_2

320320-320401

Orphan

Consensus_repeat	Method
TTGCGGTGTTTCTGCACTTTCTTGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011485_2

>merge|NZ_CP011485|2|320320-320401|CRISPRCasFinder
TTGCGGTGTTTCTGCACTTTCTTGTTTTTCTAATTCTTGCACTTGGGTTTCTTTTTCTTGCGGGGTTTCTGCACTTTCTTGT

>NZ_CP011485|2|2|320320-320401|CRISPRCasFinder
TTGCGGTGTTTCTGCACTTTCTTGT	TTTTCTAATTCTTGCACTTGGGTTTCTTTTTC
TTGCGGGGTTTCTGCACTTTCTTGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011485.1\|WP_064437339.1\|316605_317361_-\|HugZ-family-heme-oxygenase	unknown	unknown	gnl\|CDD\|200360
NZ_CP011485.1\|WP_064437335.1\|312714_313596_+\|polysaccharide-deacetylase	unknown	unknown	gnl\|CDD\|200563
NZ_CP011485.1\|WP_064437333.1\|311329_311734_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011485.1\|WP_064437348.1\|326631_327414_-\|NAD+-synthase	unknown	unknown	gnl\|CDD\|184435
NZ_CP011485.1\|WP_080471600.1\|322074_322839_-\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|280099
NZ_CP011485.1\|WP_080471601.1\|324331_325225_+\|CMP-N-acetylneuraminic-acid-synthetase	unknown	unknown	gnl\|CDD\|226488
NZ_CP011485.1\|WP_064437343.1\|322941_323655_+\|flagellar-basal-body-L-ring-protein-FlgH	unknown	unknown	gnl\|CDD\|234700
NZ_CP011485.1\|WP_000508596.1\|319051_319291_-\|twin-arginine-translocase-TatA/TatE-family-subunit	unknown	unknown	gnl\|CDD\|234822
NZ_CP011485.1\|WP_064437349.1\|327662_328655_+\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491
NZ_CP011485.1\|WP_064437338.1\|314998_316144_-\|YbfB/YjiJ-family-MFS-transporter	unknown	unknown	gnl\|CDD\|284247
NZ_CP011485.1\|WP_064437337.1\|314028_314994_+\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|223597
NZ_CP011485.1\|WP_064437342.1\|321525_322068_+\|nuclease-NucT	unknown	unknown	gnl\|CDD\|184389
NZ_CP011485.1\|WP_064437347.1\|325696_326635_-\|tetraacyldisaccharide-4'-kinase	unknown	unknown	gnl\|CDD\|224577
NZ_CP011485.1\|WP_000551231.1\|319361_319982_-\|guanylate-kinase	unknown	unknown	gnl\|CDD\|213788
NZ_CP011485.1\|WP_064437336.1\|313642_314029_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011485.1\|WP_064437334.1\|311817_312702_+\|carbon-nitrogen-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|143587
NZ_CP011485.1\|WP_064437344.1\|323678_324362_+\|pseudaminic-acid-cytidylyltransferase	unknown	unknown	gnl\|CDD\|274660
NZ_CP011485.1\|WP_064437346.1\|325221_325764_+\|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|274661
NZ_CP011485.1\|WP_064437350.1\|328678_329485_+\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|225447
NZ_CP011485.1\|WP_064437340.1\|317423_319049_-\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|273085

Protein	Function_ID	Function_description	E-value
NZ_CP011485.1\|WP_064437339.1\|316605_317361_-\|HugZ-family-heme-oxygenase	gnl\|CDD\|200360	TIGR04109, heme_ox_HugZ, heme oxygenase, HugZ family. Members of this protein family are HugZ, a class of heme oxygenase that belongs to the PPOX family (pfam01243) and lacks homology to the HmuO family (pfam01126). Characterized members of this family include HP0318 from Helicobacter pylori and CJ1613c from Campylobacter jejuni. This enzyme releases iron during the conversion of heme to biliverdin.	3.78361e-136
NZ_CP011485.1\|WP_064437335.1\|312714_313596_+\|polysaccharide-deacetylase	gnl\|CDD\|200563	cd10938, CE4_HpPgdA_like, Catalytic domain of Helicobacter pylori peptidoglycan deacetylase (HpPgdA) and similar proteins. This family is represented by a peptidoglycan deacetylase (HP0310, HpPgdA) from the gram-negative pathogen Helicobacter pylori. HpPgdA has the ability to bind a metal ion at the active site and is responsible for a peptidoglycan modification that counteracts the host immune response. It functions as a homotetramer. The monomer is composed of a 7-stranded barrel with detectable sequence similarity to the 6-stranded barrel NodB homology domain of polysaccharide deacetylase (DCA)-like proteins in the CE4 superfamily, which removes N-linked or O-linked acetyl groups from cell wall polysaccharides. In contrast to typical NodB-like DCAs, HpPgdA does not exhibit a solvent-accessible polysaccharide binding groove, suggesting that the enzyme binds a small molecule at the active site.	1.706e-137
NZ_CP011485.1\|WP_064437348.1\|326631_327414_-\|NAD+-synthase	gnl\|CDD\|184435	PRK13980, PRK13980, NAD synthetase; Provisional.	8.86604e-122
NZ_CP011485.1\|WP_064437346.1\|325221_325764_+\|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase	gnl\|CDD\|274661	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.	6.034e-60
NZ_CP011485.1\|WP_064437338.1\|314998_316144_-\|YbfB/YjiJ-family-MFS-transporter	gnl\|CDD\|284247	pfam06779, MFS_4, Uncharacterized MFS-type transporter YbfB. This family represents putative bacterial membrane proteins which may be sugar transporters. Members carry twelve transmembrane regions which are characteristic of members of the major facilitator sugar-transporter superfamily.	3.54401e-20
NZ_CP011485.1\|WP_064437343.1\|322941_323655_+\|flagellar-basal-body-L-ring-protein-FlgH	gnl\|CDD\|234700	PRK00249, flgH, flagellar basal body L-ring protein FlgH.	2.19843e-85
NZ_CP011485.1\|WP_000508596.1\|319051_319291_-\|twin-arginine-translocase-TatA/TatE-family-subunit	gnl\|CDD\|234822	PRK00720, tatA, twin-arginine translocase TatA/TatE family subunit.	4.48597e-20
NZ_CP011485.1\|WP_064437349.1\|327662_328655_+\|ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
NZ_CP011485.1\|WP_080471600.1\|322074_322839_-\|outer-membrane-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	1.56047e-52
NZ_CP011485.1\|WP_064437337.1\|314028_314994_+\|GTP-binding-protein	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	3.41817e-91
NZ_CP011485.1\|WP_064437342.1\|321525_322068_+\|nuclease-NucT	gnl\|CDD\|184389	PRK13912, PRK13912, nuclease NucT; Provisional.	1.37271e-95
NZ_CP011485.1\|WP_064437347.1\|325696_326635_-\|tetraacyldisaccharide-4'-kinase	gnl\|CDD\|224577	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane].	4.32162e-87
NZ_CP011485.1\|WP_000551231.1\|319361_319982_-\|guanylate-kinase	gnl\|CDD\|213788	TIGR03263, Guanylate_kinase, guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions].	1.06842e-99
NZ_CP011485.1\|WP_064437334.1\|311817_312702_+\|carbon-nitrogen-hydrolase-family-protein	gnl\|CDD\|143587	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and co-enzyme metabolism, in detoxifying small molecules, in the synthesis of signaling molecules, and in the post-translational modification of proteins. They are used industrially, as biocatalysts in the fine chemical and pharmaceutical industry, in cyanide remediation, and in the treatment of toxic effluent. This superfamily has been classified previously in the literature, based on global and structure-based sequence analysis, into thirteen different enzyme classes (referred to as 1-13). This hierarchy includes those thirteen classes and a few additional subfamilies. A putative distant relative, the plasmid-borne TraB family, has not been included in the hierarchy.	5.51043e-87
NZ_CP011485.1\|WP_064437344.1\|323678_324362_+\|pseudaminic-acid-cytidylyltransferase	gnl\|CDD\|274660	TIGR03584, PseF, pseudaminic acid cytidylyltransferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.	1.51922e-116
NZ_CP011485.1\|WP_080471601.1\|324331_325225_+\|CMP-N-acetylneuraminic-acid-synthetase	gnl\|CDD\|226488	COG3980, spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane].	3.39732e-101
NZ_CP011485.1\|WP_064437350.1\|328678_329485_+\|septum-site-determining-protein-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	3.43404e-149
NZ_CP011485.1\|WP_064437340.1\|317423_319049_-\|arginine--tRNA-ligase	gnl\|CDD\|273085	TIGR00456, Arginine--tRNA_ligase, arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori. [Protein synthesis, tRNA aminoacylation].	0

>NZ_CP011485.1|WP_000551231.1|319361_319982_-|guanylate-kinase
MHNDFNLLILSGPSGAGKSTLTKYLQEKIPKTHFSLSTTTRKPREGEVDGLHYNFVSEEEFKQGIEKGQFLEWAIVHNHYYGTSKIPVEKALKEGKIVIFDIDVQGHEILKKHYPNACSVFISTKNQEILKERLLLRGTDSKETIEKRLINAYKEMQCLESFDYLIINEDLEKSKEIILSIAKTLVYRLKAFNFEKICKAWKNESL
>NZ_CP011485.1|WP_000508596.1|319051_319291_-|twin-arginine-translocase-TatA/TatE-family-subunit
MGGFTSIWHWVIVLLVIVLLFGAKKIPELAKGLGSGIKNFKKAVKDDEEEAKNEPKTLDAQTAQTKVHETSEIKSKQES
>NZ_CP011485.1|WP_064437340.1|317423_319049_-|arginine--tRNA-ligase
MHTLIKGVLEEILEEEVIIEYPKDREHGHYATPIAFNLAKVFKKSPLVIAEELALKISTHEKTQGLFDSVVACKGYINFTLSLDFLERFTQKALELKEQFGSQPKSERSQKIFLEFVSANPTGPLHIGHARGAVFGDSLAKIARFLGHEVLCEYYVNDMGSQIRLLGLSVWLAYREHVLKESVTYPEVFYKGEYIIEIAKKARNDLEPDLFKENEETIIEVLSGYAKDLMLLEIKDNLDALGIHFDSYASEREVFKHKDAVFERLEKANALYEKDSKIWLKSSLYQDESDRVLIKEDKSYTYLAGDIVYHDEKFKQNYTKYINIWGADHHGYIARVKASLEFLGYDSNKLEVLLAQMVRLLKDNEPYKMSKRAGNFILIKDVIDDVGRDALRFIFLSKRLDTHLEFDVNTLKKQDSSNPIYYIHYANSRIHTMLEKSPFSKEEVLQTPLTRLNAEEKYLLFSALSLPKIIEASFEEYGLQKICEYAKTLASEFHRFYNAGKILDTPKAKELLKICLMVSLSLSNAFKLLGIEIKTKISAKD
>NZ_CP011485.1|WP_064437339.1|316605_317361_-|HugZ-family-heme-oxygenase
MLNRIIEHMNANHVEDMKGLLKKFGQVHHAENVAFKSVDPQGVVIGYNNNQTLRIEFNHEVKDPKDYKNAIIELCQSVEKTHDLKGVEEEVKAFKEGFDSVCLATLHPNGHVVCSYAPLMTDGKQYYIYVSEVAEHFAGLKNNPHNVEVMFLEDESKAKSAILRKRLRYKTNARFIERGAEFDKAFDSFIEKTGGAGGIKTIRTMQDFHLIALDFKEGRFVKGFGQAYDILGDKIAYVGDKGNPHNFAHKK
>NZ_CP011485.1|WP_064437338.1|314998_316144_-|YbfB/YjiJ-family-MFS-transporter
MRVFVCFLGVFVSNGLARFGYVVLIPLLILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLMSLESIAKISFGLIALSFLICYFDSIPFFWLWIWRFIAGVASSALMILVAPLSLPYVKEHKKALVGGLIFSAVGIGSVFSGFVLPWISSYNIKWAWIFLGGSCLIAFILSLMGLKNHSLKKKSVKKEESAFKIPFHLWLLLTSCALNAIGFLPHTLFWVDYLIRYLNISPTIAGTSWAFFGFGATLGSLISGPMAQKLGAKNANIFILILKSIACFLPIFFHQISLLNLSIFIMGAATTANINLFSMMALKIAGAKHFAKASSWVVFSFGIFQALFSYLFTIFLGDLGYLLIFVICGACLVLSFIVLFPIKMQTAIHK
>NZ_CP011485.1|WP_064437337.1|314028_314994_+|GTP-binding-protein
MPKIPITLITGFLGSGKTSFLSEYLNQIDHQGVALIINEIGQAALDQRILSVQYCGEKMLYLNAGCVCCNKRMDLVESLKAAINNYERRGKILKRIIIETTGLANPAPILWTILSDTFLGAHFEIQSVVVCVDALNAREHLTNNEAKEQIVFADSVLLTKTDLQDDSVALIKLKEQIQAINPSAEIFDKKNTDYESFFSRKNRAQNFMPRMPKDSHSQGFEILSISFEGAMEWSAFGIWLSLLLHQYGTQILRIKGIIDTGSGFLVSINGVMHIIYPPKHILKDQNGSNLVFIMRHLEREKILNSLEGFKDFLGIKGFETQ
>NZ_CP011485.1|WP_064437336.1|313642_314029_+|hypothetical-protein
MCVLCGELISSFHWTDGTDGSDGSGSYEMGKGLKGSNALISANENARERKRARLKRVGLLNRILAFYGLKIDDWQGAKFVLCDKKGQSVIVNDLGDLWDKAQNLAKKEMDALDSNLLAFLNQNTNAIR
>NZ_CP011485.1|WP_064437335.1|312714_313596_+|polysaccharide-deacetylase
MAKEILVAYGVDIDAVAGWLGSYGGEDSPDDISRGLFAGEVGIPRLLKLFKKYHLPATWFAPGHSIETFPEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEEDVLLKSVELIKDLTGKAPTGYVAPWWEFSNITNELLLKHGFKYDHSLMHNDFTPYFVRVGDSWSKIDYSLEAKDWMKPLIRGVETDLVEIPANWYLDDLPPMMFIKKSPNSFGFVSPHDIGQMWIDQFDWVYREMDYAVFGMTIHPDVSARPQVLLMHEKIIEHINKHEGVRWVTFNEIADDFLKRSPRKK
>NZ_CP011485.1|WP_064437334.1|311817_312702_+|carbon-nitrogen-hydrolase-family-protein
MKTKNLAKRILKTALIQMQSKPYALNENLQLALNLAKEAHNKGANLIVLPELFDSGYCVNDKDADFGIDFKAIERGKEMLKNELLRALSDFAKSNQVHLVACSIEKTDKKLYDCAYIIAPKGKIVGKHRKIYLWGDEKSRFKRGKKYEVFTLDFGDFSAKVGLQICYEIGFGVGANLLALQGAEILIYPSAFGKARAYNWDLLSKARALENGCFVCACNHSGEETNAKLKQTLEFAGDSRIIAPNGKIIAQATKLNEVIIAEMDLNEVALQRQKIPYLQDFDTKLTKKGFGKLT
>NZ_CP011485.1|WP_064437333.1|311329_311734_+|hypothetical-protein
MCQIKCLLILLAINIVSAIIVYFFQASQGVLNFEGGFLGFFIVALSSYYGVKKRLDLRKQNSEEKEEKQKFQKFALGLEMSFNVWRLGGYGVLLGILGALLFSHLFNGLIFLIGVFVSSLSSAWLRFLNNSGKF
>NZ_CP011485.1|WP_064437342.1|321525_322068_+|nuclease-NucT
MLNKFKKIVGVSVLVGCLGVLQAKNSLFVLPYEQRDALNSLVSGISNARESVKIAIYSFTHRDIARAIKSVASRGIKVQIIYDYESNHNNKQSTIGYLDKYPNTKVCLLKGLKAKNGNYYGIMHQKVAIIDDKIVFLGSANWSKNAFENNYEVLLKTDDTETILKAKSYYQKMLESCVGF
>NZ_CP011485.1|WP_080471600.1|322074_322839_-|outer-membrane-protein
MKLNLQEIKLRTLLKMLVSASLLTHALVAKEESAAPSWTRNLYMGFNYQTGSINLMTNIHEVREVTNYQTGYTNIMTSVNSVKKLTNMGSNGIGLVMGYNHFFHPDKILGLRYFAFLDWQGYGMRYPKGYYGGNNMITYGVGIDAMWNFFQGSFYRDDIGVDIGVFGGIAIAGNSWYIGSKGQELLGITNSSAVDNTSFQFLFNFGLKALFVDEHEFEIGFKFPTINNKYYTTDALKVQMRRVFAFYVGYNYHF
>NZ_CP011485.1|WP_064437343.1|322941_323655_+|flagellar-basal-body-L-ring-protein-FlgH
MKKALYLGAVAFSVAFSMASANEPKIDFNPPNYVEETPSKEFIPELNKLGSLFGQGERPLFADRRAMKPNDLITIIVSEKASANYSSSKDYKSASGGNSTPPRLTYNGLDESKRKEAQYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGNKEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNKKKFAADAMETQMPY
>NZ_CP011485.1|WP_064437344.1|323678_324362_+|pseudaminic-acid-cytidylyltransferase
MRAIAIVLARSSSKRIKNKNIIDFFNKPMLAYPIEAALNSKIFEKVFISSDSMEYVHLAKNYGASFLNLRPKVLADDRATTLEVMAYHMKELELKDEDIACCLYGTSALLQEKHLKNAFGMLKENTDYVFTCSPFSASPYRSFSLENGVQMAFKEHLNTRTQDLKTLYHDAGLLYMGKAQAFKEMRPIFSQNSIALELSPLEVQDIDTLEDLELAKLKYSRLKNACQ
>NZ_CP011485.1|WP_080471601.1|324331_325225_+|CMP-N-acetylneuraminic-acid-synthetase
MQPFEKRMPVKILCDCFSTSGLGHVRRCEKILSLIEKLGVKADLYLHKQNNISAFLEGVGNDDFLITDSYCLNSKDFYLLKEKAKSLMVIEDKEHAKGFYPKNTKIMNFTLNASKHYHYLSKDYQYYLGVGFYPVDTRFVYEHPINTENKEVLITLGGSEQKILKEIVKILENKGMHLHIISPHIPKNPPKNTHYYSPLSPLEFSSLMKFCAYAISAAGQTLYELALSQTPSLIIPIASNQIIQSKEFESLGLFKQTSLKTLAKDFEKLQIQKNQAWAKNLAFGSELEGALREFLEI
>NZ_CP011485.1|WP_064437346.1|325221_325764_+|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase
MRKNYSYKNIQAIDFTRLNDEEKLLVLEFRNHPNTALWMYSAFISLKTHLQFIEDLKNSPNNRYFLFKEEGVYLGVGSITKINFFHKHGYLGIYKNPFLKNRGETILKALECIAFEELQLNSLHLEVMENNFKAIAFYEKNHYELEGRLKGFISKEKEFIDVLLYCKDKKGYNNQSALKF
>NZ_CP011485.1|WP_064437347.1|325696_326635_-|tetraacyldisaccharide-4'-kinase
MKSDKPFLERYFYDPTLLQKGLIFALYPFSLIYQGIATLKRKTAKKHDFKIPIVSIGNLIAGGSGKTPFILEIAPRYQEVAVVSRGYQRDSKGLVVVSVKGNILVSQQTAGDEAYLLALNLKQASVIVSEKRELGVLKALELGAKIVFLDDGFRFNFNQFNALLKPKIPPYYPFCLPSGLYRESVKSYKEAHLVITEDKDYKRITSITRPTKRMLLVTAIANPSRLDAFLPKEVVKKWYFRDHAPFDLKLLEKEFYKNNATSLLVTSKDLVKLQDCNLPLSVLDLKLEICPKILEQIDYYILSYPCNTKEHL
>NZ_CP011485.1|WP_064437348.1|326631_327414_-|NAD+-synthase
MQKDYQKLIVYLCDFLEKEAQRRGFKKVVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSSVSMPESKTDALNLCETFSIPYTEYSIAPYDAIFDSHFKDASLTRKGNFCARLRMAFLYDYSLKSDSLVVGTSNKSERMLGYGTLFGDLACAINPIGELFKTEVYELACHLNIPKKILNKPPSADLFVGQSDEKDLGYPYSVIDPLLKDIEALFQTKPICLETLTQLGYDEILVKDIISRIQKNAFKLELPAIAQKFNPK
>NZ_CP011485.1|WP_064437349.1|327662_328655_+|ketol-acid-reductoisomerase
MALPVYYDKDIDLGVIQSLQVGIIGYGAQGEAQALNLRDSKVRVRIGLYQGSLSASKAKAEGFEVLEVKELARQSDVIMALLPDELHKEVLEKEVIPFLKEGQIVGFAHGFSVHFNQVILPKGVGVILVAPKGPGSALREEYLKNRGLYHLIAIEQESSKNNAKAVALSYAKAMGGGRMGVLETSFKEECESDLFGEQAVLCGGLEAIVRMGFETLIKAGYPEELAYFECVHEVKLVADLLHYKGVEGLRKHISNTAEFGAIKNREPMENRLEKRMQKILKKIQNGSFAKDFLLEKSLNYPRLNTERKALKETKIEQIGEILRAPFNHQK
>NZ_CP011485.1|WP_064437350.1|328678_329485_+|septum-site-determining-protein-MinD
MAIVVTITSGKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLRNLDMILGLENRIVYDVVDVMEKNCNLSQALITDKKTKNLSFLAASQSKDKNILDKEKVAILINALRADFDYILIDSPAGIESGFEHAILHADMALVVVTPEVSSLRDSDRVIGIIDAKSNRAKRGEEVHKHLIINRLKPELVANGEMIPIEEVLKILCLPLIGIIPEDSHIISATNKGEPVIRTDCESAKAYQRITRRILGEEVEYVEFKAKRGFFSALKGMFS

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Crispr_ID: NZ_CP011485_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011485_3

331786-331919

Orphan

Consensus_repeat	Method
AGAAAGGCTCTCTAGCGTTACTGAAGAAATTATTTCAAAAAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011485_3

>merge|NZ_CP011485|3|331786-331919|CRISPRCasFinder
AGAAAGGCTCTCTAGCGTTACTGAAGAAATTATTTCAAAAAAACAAGAAGAATTACAGAGCAAAGAAACCCCAGAGAGTAAGCATGATGGAGAAAGGCTCTCTAGCGTTACTGAAGAAATCATTTCAAAAAAAC

>NZ_CP011485|3|3|331786-331919|CRISPRCasFinder
AGAAAGGCTCTCTAGCGTTACTGAAGAAATTATTTCAAAAAAAC	AAGAAGAATTACAGAGCAAAGAAACCCCAGAGAGTAAGCATGATGG
AGAAAGGCTCTCTAGCGTTACTGAAGAAATCATTTCAAAAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011485.1\|WP_080471602.1\|339889_340666_+\|flagellar-assembly-protein-FliH	unknown	unknown	gnl\|CDD\|235850
NZ_CP011485.1\|WP_064437348.1\|326631_327414_-\|NAD+-synthase	unknown	unknown	gnl\|CDD\|184435
NZ_CP011485.1\|WP_064437353.1\|330523_330928_+\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|234639
NZ_CP011485.1\|WP_064437352.1\|329726_330527_+\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|273238
NZ_CP011485.1\|WP_064437356.1\|332100_333009_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP011485.1\|WP_064437354.1\|331101_331407_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011485.1\|WP_080471601.1\|324331_325225_+\|CMP-N-acetylneuraminic-acid-synthetase	unknown	unknown	gnl\|CDD\|226488
NZ_CP011485.1\|WP_064437349.1\|327662_328655_+\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491
NZ_CP011485.1\|WP_064437362.1\|344332_345262_+\|DNA-(cytosine-5-)-methyltransferase	unknown	unknown	gnl\|CDD\|273211
NZ_CP011485.1\|WP_064437351.1\|329481_329715_+\|cell-division-topological-specificity-factor-MinE	unknown	unknown	gnl\|CDD\|188120
NZ_CP011485.1\|WP_064437359.1\|336444_337107_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239486
NZ_CP011485.1\|WP_000201859.1\|338871_339903_+\|flagellar-motor-switch-protein-FliG	unknown	unknown	gnl\|CDD\|272961
NZ_CP011485.1\|WP_064437347.1\|325696_326635_-\|tetraacyldisaccharide-4'-kinase	unknown	unknown	gnl\|CDD\|224577
NZ_CP011485.1\|WP_080471604.1\|342515_344324_+\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_CP011485.1\|WP_064437360.1\|337150_338854_+\|flagellar-basal-body-M-ring-protein-FliF	unknown	unknown	gnl\|CDD\|129310
NZ_CP011485.1\|WP_080471603.1\|340662_342519_+\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|129308
NZ_CP011485.1\|WP_064437346.1\|325221_325764_+\|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|274661
NZ_CP011485.1\|WP_064437357.1\|333008_334559_-\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|273193
NZ_CP011485.1\|WP_064437358.1\|334567_336184_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP011485.1\|WP_064437350.1\|328678_329485_+\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|225447

Protein	Function_ID	Function_description	E-value
NZ_CP011485.1\|WP_080471602.1\|339889_340666_+\|flagellar-assembly-protein-FliH	gnl\|CDD\|235850	PRK06669, fliH, flagellar assembly protein H; Validated.	1.82034e-65
NZ_CP011485.1\|WP_064437348.1\|326631_327414_-\|NAD+-synthase	gnl\|CDD\|184435	PRK13980, PRK13980, NAD synthetase; Provisional.	8.86604e-122
NZ_CP011485.1\|WP_064437353.1\|330523_330928_+\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|234639	PRK00109, PRK00109, Holliday junction resolvase RuvX.	1.23353e-36
NZ_CP011485.1\|WP_064437352.1\|329726_330527_+\|DNA-protecting-protein-DprA	gnl\|CDD\|273238	TIGR00732, Protein_smf, DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function. [Cellular processes, DNA transformation].	4.02031e-93
NZ_CP011485.1\|WP_064437356.1\|332100_333009_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	7.81523e-61
NZ_CP011485.1\|WP_080471601.1\|324331_325225_+\|CMP-N-acetylneuraminic-acid-synthetase	gnl\|CDD\|226488	COG3980, spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane].	3.39732e-101
NZ_CP011485.1\|WP_064437349.1\|327662_328655_+\|ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
NZ_CP011485.1\|WP_064437362.1\|344332_345262_+\|DNA-(cytosine-5-)-methyltransferase	gnl\|CDD\|273211	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	6.01087e-113
NZ_CP011485.1\|WP_064437351.1\|329481_329715_+\|cell-division-topological-specificity-factor-MinE	gnl\|CDD\|188120	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE. This protein is involved in the process of cell division. This protein prevents the proteins MinC and MinD to inhibit cell division at internal sites, but allows inhibiton at polar sites. This allows for correct cell division at the proper sites. [Cellular processes, Cell division].	1.45115e-24
NZ_CP011485.1\|WP_064437359.1\|336444_337107_+\|hypothetical-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	2.10738e-13
NZ_CP011485.1\|WP_000201859.1\|338871_339903_+\|flagellar-motor-switch-protein-FliG	gnl\|CDD\|272961	TIGR00207, Flagellar_motor_switch_protein_FliG, flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family. [Cellular processes, Chemotaxis and motility].	1.07e-164
NZ_CP011485.1\|WP_064437347.1\|325696_326635_-\|tetraacyldisaccharide-4'-kinase	gnl\|CDD\|224577	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane].	4.32162e-87
NZ_CP011485.1\|WP_080471604.1\|342515_344324_+\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_CP011485.1\|WP_064437360.1\|337150_338854_+\|flagellar-basal-body-M-ring-protein-FliF	gnl\|CDD\|129310	TIGR00206, Flagellar_M-ring_protein, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF). Component of the M (cytoplasmic associated) ring, one of four rings (L,P,S,M) which make up the flagellar hook-basal body which is a major portion of the flagellar organelle. Although the basic structure of the flagella appears to be similar for all bacteria, additional rings and structures surrounding the basal body have been observed for some bacteria (eg Vibrio cholerae and Treponema pallidum). [Cellular processes, Chemotaxis and motility].	0
NZ_CP011485.1\|WP_080471603.1\|340662_342519_+\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|129308	TIGR00204, 1-deoxy-D-xylulose-5-phosphate_synthase, 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP). [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine, Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	0
NZ_CP011485.1\|WP_064437346.1\|325221_325764_+\|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase	gnl\|CDD\|274661	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.	6.034e-60
NZ_CP011485.1\|WP_064437357.1\|333008_334559_-\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP011485.1\|WP_064437358.1\|334567_336184_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP011485.1\|WP_064437350.1\|328678_329485_+\|septum-site-determining-protein-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	3.43404e-149

>NZ_CP011485.1|WP_064437354.1|331101_331407_+|hypothetical-protein
MKILHQVRDFLDSCKQTIQKNSNEVFQKTKRALFKEESQKIREQAVKIVEKRLKEKGMKLSDFNEEELKIMFEAEEKRLLEQIHTKHFKEVWEKGENEREK
>NZ_CP011485.1|WP_064437353.1|330523_330928_+|Holliday-junction-resolvase-RuvX
MILACDVGLKRIGIATLLNGVILPLEAILRHNRNQASRDLSDLLKEKNIQVLVVGKPNESYANTCARIEHFIKLVDFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKR
>NZ_CP011485.1|WP_064437352.1|329726_330527_+|DNA-protecting-protein-DprA
MKSNFQYSALENIPKAFDILKDPPKKLYFAGDIKLLDAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGVDIIAQENALPKTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPIKGSFLARNRLVIALSDAIIIPQADLKSGSMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEMKDEFLEYCAKNPSYEEAYLKFGDKLLEYELLGKIKRINHIVVLA
>NZ_CP011485.1|WP_064437351.1|329481_329715_+|cell-division-topological-specificity-factor-MinE
MSLFDFLKNKGSAATATDRLKLILAKERTLNLPYMEEMRKEIIAVIQKYTKSSDIHFKTLDGNQSVETIEVEIILPK
>NZ_CP011485.1|WP_064437350.1|328678_329485_+|septum-site-determining-protein-MinD
MAIVVTITSGKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLRNLDMILGLENRIVYDVVDVMEKNCNLSQALITDKKTKNLSFLAASQSKDKNILDKEKVAILINALRADFDYILIDSPAGIESGFEHAILHADMALVVVTPEVSSLRDSDRVIGIIDAKSNRAKRGEEVHKHLIINRLKPELVANGEMIPIEEVLKILCLPLIGIIPEDSHIISATNKGEPVIRTDCESAKAYQRITRRILGEEVEYVEFKAKRGFFSALKGMFS
>NZ_CP011485.1|WP_064437349.1|327662_328655_+|ketol-acid-reductoisomerase
MALPVYYDKDIDLGVIQSLQVGIIGYGAQGEAQALNLRDSKVRVRIGLYQGSLSASKAKAEGFEVLEVKELARQSDVIMALLPDELHKEVLEKEVIPFLKEGQIVGFAHGFSVHFNQVILPKGVGVILVAPKGPGSALREEYLKNRGLYHLIAIEQESSKNNAKAVALSYAKAMGGGRMGVLETSFKEECESDLFGEQAVLCGGLEAIVRMGFETLIKAGYPEELAYFECVHEVKLVADLLHYKGVEGLRKHISNTAEFGAIKNREPMENRLEKRMQKILKKIQNGSFAKDFLLEKSLNYPRLNTERKALKETKIEQIGEILRAPFNHQK
>NZ_CP011485.1|WP_064437348.1|326631_327414_-|NAD+-synthase
MQKDYQKLIVYLCDFLEKEAQRRGFKKVVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSSVSMPESKTDALNLCETFSIPYTEYSIAPYDAIFDSHFKDASLTRKGNFCARLRMAFLYDYSLKSDSLVVGTSNKSERMLGYGTLFGDLACAINPIGELFKTEVYELACHLNIPKKILNKPPSADLFVGQSDEKDLGYPYSVIDPLLKDIEALFQTKPICLETLTQLGYDEILVKDIISRIQKNAFKLELPAIAQKFNPK
>NZ_CP011485.1|WP_064437347.1|325696_326635_-|tetraacyldisaccharide-4'-kinase
MKSDKPFLERYFYDPTLLQKGLIFALYPFSLIYQGIATLKRKTAKKHDFKIPIVSIGNLIAGGSGKTPFILEIAPRYQEVAVVSRGYQRDSKGLVVVSVKGNILVSQQTAGDEAYLLALNLKQASVIVSEKRELGVLKALELGAKIVFLDDGFRFNFNQFNALLKPKIPPYYPFCLPSGLYRESVKSYKEAHLVITEDKDYKRITSITRPTKRMLLVTAIANPSRLDAFLPKEVVKKWYFRDHAPFDLKLLEKEFYKNNATSLLVTSKDLVKLQDCNLPLSVLDLKLEICPKILEQIDYYILSYPCNTKEHL
>NZ_CP011485.1|WP_064437346.1|325221_325764_+|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase
MRKNYSYKNIQAIDFTRLNDEEKLLVLEFRNHPNTALWMYSAFISLKTHLQFIEDLKNSPNNRYFLFKEEGVYLGVGSITKINFFHKHGYLGIYKNPFLKNRGETILKALECIAFEELQLNSLHLEVMENNFKAIAFYEKNHYELEGRLKGFISKEKEFIDVLLYCKDKKGYNNQSALKF
>NZ_CP011485.1|WP_080471601.1|324331_325225_+|CMP-N-acetylneuraminic-acid-synthetase
MQPFEKRMPVKILCDCFSTSGLGHVRRCEKILSLIEKLGVKADLYLHKQNNISAFLEGVGNDDFLITDSYCLNSKDFYLLKEKAKSLMVIEDKEHAKGFYPKNTKIMNFTLNASKHYHYLSKDYQYYLGVGFYPVDTRFVYEHPINTENKEVLITLGGSEQKILKEIVKILENKGMHLHIISPHIPKNPPKNTHYYSPLSPLEFSSLMKFCAYAISAAGQTLYELALSQTPSLIIPIASNQIIQSKEFESLGLFKQTSLKTLAKDFEKLQIQKNQAWAKNLAFGSELEGALREFLEI
>NZ_CP011485.1|WP_064437356.1|332100_333009_-|RluA-family-pseudouridine-synthase
MPFVEEEFEILKPTKALFFVRDVLKCSLKEAQRHLDKQRLKHNQQVVRKSQMIQGVVSLIYFKPNEKQGKLVFETKDFGVFDKPHQVYTHPKGYFYHESLLDCIQSHFGKNAHPAHRLDYEASGLVLAGKTLQSVKDLKALFMQKKVKKTYLTLAHGLVDKSITIDKPILTPKNIQKDLRIKSKISPLGKPSITLVEPLSYNPFLDISLLKITPLTGRTHQIRLHLSSVNHRIVGEGLYGVMDENAREYLQLKRENNAPLLMLHAFSLEFEFKKAIYKIASQMPKRFMPFLKDWPSTDWLFS
>NZ_CP011485.1|WP_064437357.1|333008_334559_-|single-stranded-DNA-specific-exonuclease-RecJ
MKQKLKAQIKERVASIAYNEKGFPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIAIPNRFIDGYGISKKFLEKHHAPLIITVDNGISAFEAARFCKEKNYTLIITDHHCLHHDEVPDAYAVINPKQEDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLINSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMKRKMIQQQVFEEAFQHAMVGEKIIIAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSGRSSQNIDLIDALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKVLPFCEKEPPLTLQLKDIDRELLKIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECIKEAIYFNTERFLKAGEKVSVLFSVELDEYSNEPKMFVKSLL
>NZ_CP011485.1|WP_064437358.1|334567_336184_-|CTP-synthase-(glutamine-hydrolyzing)
MDRAKFIFVTGGVLSSLGKGISSSSIATLLQHCNYQVSILKIDPYINIDPGTMSPLEHGEVFVTSDGAETDLDIGHYERFLNRNLTRLNNFTTGQIFSSVIENERKGEYLGKTIQIVPHVTDEIKRRIKSAAKGLDFLIVEVGGTVGDMEGMFYLEAIRQLKLELGNEKVINVHVTLIPYIQTTNELKTKPTQHSVQELRRLGVTPQIILARSPKPLDKELKNKIALSCDVEQDSVIVATDTKSIYACPILFLQEGILTPIARRFNLNKLHPKMAAWNTLVEKIIAPKHKVRIGFVGKYLSLKESYKSLIEALIHAGAHLDTQVNIEWLDSENFNEKTDLEGVDAVLVPGGFGERGIEGKICAIQRARLEKLPFLGICLGMQLAIVEFCRNVLGLKGANSTEFNQHCEYPVVYLIEDFMDQNHQKQVRTYNSPLGGTMRLGEYECEIVPNSLLEKAYKKPSIKERHRHRYEINPKYRQEWENKGLKVVGFGANHLIEAIELEDHPFFVGVQFHPEFTSRLQSPNPIILDFIKNALYKS
>NZ_CP011485.1|WP_064437359.1|336444_337107_+|hypothetical-protein
MAENSFKNVSTQPKVFFLLQVKTLFLLGGVFSALFILIVGLVFFDYDHLVDNAIFSLMRSNSSNPILDQTLQRIVFLGSSQFVLPLSLLVGVFLSLYRRNLALGVWFVLSVVAFEALLESLKHLLAHFIQWFSHSANFPNATALSLALFYGLLVLLIPHLITHQIFQNILSYSLLCLILLIGLALIVLGASFSSVLGGVCLGALGACFSIGIYLSVFQKI
>NZ_CP011485.1|WP_064437360.1|337150_338854_+|flagellar-basal-body-M-ring-protein-FliF
MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALILQHLQQNQIPYKILKDDTILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLSPTQILGIKNLIAASVPKLTIDNVKVVNENGESIGEGDILENSKELALEQLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGASKKQVGGVPGVVSNIGPVQGLKDNKEPEKYEKSQNTTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGVNTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEFNPTAPMLDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIRGTLKERPDEIAMLFKLLIKDEISSDSAKG
>NZ_CP011485.1|WP_000201859.1|338871_339903_+|flagellar-motor-switch-protein-FliG
MATKLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAVLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEARKVMDKLTKSLQTQKNFAYLGKIKPQQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMFTFEDIAKLDNFAIREILKVADKKDLSLALKTSTQDLTDKFLNNMSSRAAEQFVEEMQYLGAVKIKDVDVAQRKIIEIVQSLQEKGVIQTGEEEDVIE
>NZ_CP011485.1|WP_080471602.1|339889_340666_+|flagellar-assembly-protein-FliH
MSLNSRKNLIQKDHLNKHDIQKYEFKSMANLPPKTNPNSASLETPNPQEPLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEESKALVENAKNDGYKIGFKEGEEKMRNELTHSVNEEKNQLLHAITALDEKMKKSEDHLMALEKELSAIAIDIAKEVILKEVEDNSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNERLQNASKIKLESNEAISKGGVMITSSNGSLDGNLMERFKTLKESVLENFKV
>NZ_CP011485.1|WP_080471603.1|340662_342519_+|1-deoxy-D-xylulose-5-phosphate-synthase
MILQNKTFDLNPNDIAGLELVCQTLRSRILEVVSANGGHLSSSLGAVELIVGMHALFDCQKNPFIFDTSHQAYAHKLLTGRFESFSTLRQFKGLSGFTKPSESAYDYFIAGHSSTSVSIGVGVAKAFCLKQAIGMPIALLGDGSISAGIFYEALNELGDRKYPMIMILNDNEMSISTPIGALSKALSQLMKGPFYQSFRSKVKKILSTLPESVNYLASRFEESFKLITPGVFFEELGINYIGPINGHDLSAIIETLKLAKELKEPVLIHAQTLKGKGYKIAEGRYEKWHGVGPFDLDTGLSKKSKSAILSPTEAYSNTLLELAKKDEKIVGVTAAMPSGTGLDKLIDAYPLRFFDVAIAEQHALTSSSAMAKEGFKPFVSIYSTFLQRAYDSIVHDACISSLPIKLAIDRAGIVGEDGETHQGLLDVSYLRSIPNMVIFAPRDNETLKNAVRFANEYDSSPCAFRYPRGSFALKEGVFEPSGFVLGQSELLKKEGEILLIGYGNGVGRAYLVQLALKEKNIECALLDLRFLKPLDQNLSAIVAPYQKIYVFSDNYKLGGVASAILEFLSEQNILKPVKSFEIIDEFIMHGNTALVEKSLGLDTESLTDAILKDLGQER
>NZ_CP011485.1|WP_080471604.1|342515_344324_+|elongation-factor-4
MKSKAPMKNIRNFSIIAHIDHGKSTLADCLIAECNAISNREMTSQVMDTMDIEKERGITIKAQSVRLNYTLKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIALDNNLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSSANEVSAKARLGIKDLLEKIITTIPAPSGDPNAPLKALIYDSWFDNYLGALALVRIMDGSINTEQEILVMGTGKKHGVLGLYYPNPLKKIPTKSLECGEIGIVSLGLKSVTDIAVGDTLTDAKNPTPKPIEGFMPAKPFVFAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFGFRVGFLGLLHMEVIKERLEREFGLNLIATAPTVVYEVHLTDNSIKYVQNPSELPPENHIACIKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDKLKSCTKGYASFDYEPIENREAHLVKLDVRVAGDVVDALSIIIDKNKAYEKGRALVETMKELIPRQLFEVAIQASVGNKIIARETIKSVGKNVTAKCYGGDITRKRKLLEKQKEGKKRMKAIGKVELPQEAFLAILKID
>NZ_CP011485.1|WP_064437362.1|344332_345262_+|DNA-(cytosine-5-)-methyltransferase
MKVGSLFAGIGGFECAFLQAGFEIGWANELDKDACNTYRANFKHKLLEQDIKDLNPNELEDVGLISAGFPCQAFSIAGLQKGLNDERGAIVIEMFRIIQAKKPQVLLLENVKNLASHNKGETLKFILETLKNLGYFVHYKILNTYEYSTIPQNRERIYIIGFLDKNHYKRFHFPLKINHTQSIKDLLEIKVGEEFYYKQYRFYETLKKEITKRDTCYQWRRHYVRENKNNLCPTLTANMGTGGHNVPLVLDEQGIRKLTPKECLNFQGFAKDYVLPDTAKSKLYKQIGNSVSVPVIKALALEIKKVVYG

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Crispr_ID: NZ_CP011485_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011485_4

697092-697279

Orphan

Consensus_repeat	Method
TTAGAAACCGAGACTAAAAGCGAAAAAAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP011485_4

>merge|NZ_CP011485|4|697092-697279|CRISPRCasFinder
TTAGAAACCGAGACTAAAAGCGAAAAAAAAAGCAGTAAAAAATTTTACAAACTCCATAAAAAACATGGGTTAGAAACCGAGACTAAAAACGAAAAAAAGCTTTATGATTTCACTAAAAATAGCGCTTTAGAAGGCATAGATTTAGAAAAAAGCCCTACCCTTAAAAGCCATAAAAAAAGCGATAAAAA

>NZ_CP011485|4|4|697092-697279|CRISPRCasFinder
TTAGAAACCGAGACTAAAAGCGAAAAAAA	AAGCAGTAAAAAATTTTACAAACTCCATAAAAAACATGGG
TTAGAAACCGAGACTAAAAACGAAAAAAA	GCTTTATGATTTCACTAAAAATAGCGCTTTAGAAGGCATAGATTTAGAAAAAAGCCCTACC
CTTAAAAGCCATAAAAAAAGCGATAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011485.1\|WP_064437627.1\|695101_695794_+\|7-cyano-7-deazaguanine-synthase-QueC	unknown	unknown	gnl\|CDD\|129461
NZ_CP011485.1\|WP_064437631.1\|698983_699520_-\|hydrogenase-biosynthesis-protein-HydD	unknown	unknown	gnl\|CDD\|99873
NZ_CP011485.1\|WP_064437625.1\|691594_692914_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|237094
NZ_CP011485.1\|WP_064437635.1\|703269_703854_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225158
NZ_CP011485.1\|WP_064437622.1\|688795_689617_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|224131
NZ_CP011485.1\|WP_064437632.1\|699516_700191_-\|Ni/Fe-hydrogenase,-b-type-cytochrome-subunit	unknown	unknown	gnl\|CDD\|224880
NZ_CP011485.1\|WP_064437623.1\|689613_691296_-\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381604
NZ_CP011485.1\|WP_064437638.1\|707235_708441_-\|2,3,4,5-tetrahydropyridine-2,6-carboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|225082
NZ_CP011485.1\|WP_064437639.1\|708443_709523_-\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|377382
NZ_CP011485.1\|WP_064437633.1\|700203_701940_-\|nickel-dependent-hydrogenase-large-subunit	unknown	unknown	gnl\|CDD\|366057
NZ_CP011485.1\|WP_064437626.1\|693788_695039_-\|CCA-tRNA-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|223690
NZ_CP011485.1\|WP_064437630.1\|697443_698982_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011485.1\|WP_064437636.1\|703915_705976_-\|DUF262-domain-containing-protein	unknown	unknown	gnl\|CDD\|224396
NZ_CP011485.1\|WP_064437628.1\|696457_696910_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011485.1\|WP_064437624.1\|691304_691598_-\|YggT-family-protein	unknown	unknown	gnl\|CDD\|223833
NZ_CP011485.1\|WP_064437619.1\|685641_687048_-\|aspartate-ammonia-lyase	unknown	unknown	gnl\|CDD\|237031
NZ_CP011485.1\|WP_064437637.1\|706165_707224_-\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|223861
NZ_CP011485.1\|WP_064437621.1\|688376_688784_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011485.1\|WP_064437620.1\|687105_688374_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|236486
NZ_CP011485.1\|WP_064437634.1\|701949_703110_-\|hydrogenase-1-small-subunit	unknown	unknown	gnl\|CDD\|273053

Protein	Function_ID	Function_description	E-value
NZ_CP011485.1\|WP_064437627.1\|695101_695794_+\|7-cyano-7-deazaguanine-synthase-QueC	gnl\|CDD\|129461	TIGR00364, 7-cyano-7-deazaguanine_synthase, queuosine biosynthesis protein QueC. Members of this protein family are QueC, involved in synthesizing pre-Q0 from GTP en route to tRNA modification with queuosine. This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti, the gene was designated exsB, possibly because of polar effects on exsA expression in a shared polycistronic mRNA. In Arthrobacter viscosus, the homologous gene was designated ALU1 and was associated with an aluminum tolerance phenotype. [Unknown function, General].	5.73064e-104
NZ_CP011485.1\|WP_064437631.1\|698983_699520_-\|hydrogenase-biosynthesis-protein-HydD	gnl\|CDD\|99873	cd06062, H2MP_MemB-H2up, Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.	2.13069e-57
NZ_CP011485.1\|WP_064437625.1\|691594_692914_-\|glutamate--tRNA-ligase	gnl\|CDD\|237094	PRK12410, PRK12410, glutamylglutaminyl-tRNA synthetase; Provisional.	0
NZ_CP011485.1\|WP_064437635.1\|703269_703854_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|225158	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only].	6.15284e-55
NZ_CP011485.1\|WP_064437622.1\|688795_689617_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	3.0115e-160
NZ_CP011485.1\|WP_064437632.1\|699516_700191_-\|Ni/Fe-hydrogenase,-b-type-cytochrome-subunit	gnl\|CDD\|224880	COG1969, HyaC, Ni,Fe-hydrogenase I cytochrome b subunit [Energy production and conversion].	4.52559e-94
NZ_CP011485.1\|WP_064437623.1\|689613_691296_-\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381604	cd13401, Slt70-like, 70kDa soluble lytic transglycosylase (Slt70) and similar proteins. Catalytic domain of the 70kda soluble lytic transglycosylase (LT)-like proteins, which also have an N-terminal U-shaped U-domain and a linker L-domain. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda.	1.92057e-50
NZ_CP011485.1\|WP_064437639.1\|708443_709523_-\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl\|CDD\|377382	pfam04551, GcpE, GcpE protein. In a variety of organisms, including plants and several eubacteria, isoprenoids are synthesized by the mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway. Although different enzymes of this pathway have been described, the terminal biosynthetic steps of the MEP pathway have not been fully elucidated. GcpE gene of Escherichia coli is involved in this pathway.	0
NZ_CP011485.1\|WP_064437633.1\|700203_701940_-\|nickel-dependent-hydrogenase-large-subunit	gnl\|CDD\|366057	pfam00374, NiFeSe_Hases, Nickel-dependent hydrogenase.	0
NZ_CP011485.1\|WP_064437626.1\|693788_695039_-\|CCA-tRNA-nucleotidyltransferase	gnl\|CDD\|223690	COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis].	4.62877e-89
NZ_CP011485.1\|WP_064437636.1\|703915_705976_-\|DUF262-domain-containing-protein	gnl\|CDD\|224396	COG1479, COG1479, Uncharacterized conserved protein [Function unknown].	4.17858e-32
NZ_CP011485.1\|WP_064437638.1\|707235_708441_-\|2,3,4,5-tetrahydropyridine-2,6-carboxylate-N-succinyltransferase	gnl\|CDD\|225082	COG2171, DapD, Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism].	1.71653e-90
NZ_CP011485.1\|WP_064437624.1\|691304_691598_-\|YggT-family-protein	gnl\|CDD\|223833	COG0762, COG0762, Predicted integral membrane protein [Function unknown].	2.99697e-07
NZ_CP011485.1\|WP_064437619.1\|685641_687048_-\|aspartate-ammonia-lyase	gnl\|CDD\|237031	PRK12273, aspA, aspartate ammonia-lyase; Provisional.	0
NZ_CP011485.1\|WP_064437637.1\|706165_707224_-\|sel1-repeat-family-protein	gnl\|CDD\|223861	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].	2.31772e-45
NZ_CP011485.1\|WP_064437620.1\|687105_688374_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|236486	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated.	0
NZ_CP011485.1\|WP_064437634.1\|701949_703110_-\|hydrogenase-1-small-subunit	gnl\|CDD\|273053	TIGR00391, small_subunit, hydrogenase (NiFe) small subunit (hydA). Called (hupA/hydA/hupS/hoxK/vhtG) Involved in hydrogenase reactions performing different specific functions in different species eg (EC 1.12.2.1) in Desulfovibrio gigas,(EC 1.12.99.3) in Wolinella succinogenes and (EC 1.18.99.1) in E.coli and a number of other species and (EC 1.12.99.-) in the archea. [Energy metabolism, Electron transport].	0

>NZ_CP011485.1|WP_064437628.1|696457_696910_+|hypothetical-protein
MHPNHKTFLPDQPAHLSKIILFLNAGFLAYLLSACGANVPIEEVLVKDPKETKAQEVAREEKAIQQENATIDAHTTPLINRFTNYNAYGSLNGFYNSVDNLNSPMQNGMYGGYYMPYYYMPYGFMPYGSGLMPYGPYGYGAPGYFPYAFY
>NZ_CP011485.1|WP_064437627.1|695101_695794_+|7-cyano-7-deazaguanine-synthase-QueC
MEQEICVISFSGGQDSTTLAVWAKKRFKKVYLVGFDYAQKHSVELECAQKIASLLQLPYEIIPLDFLENITRSALFKNSNDLIGQPYEKGSAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNIALGVSQADFSGYPDCKEDFIKSIEYALNLGSNTAIKIVTPLMFLNKAQEFQMAKDLDVLDLVIKETHTCYQGERKILHAYGYGCDECPACQLRKKGYEEFQAKAL
>NZ_CP011485.1|WP_064437626.1|693788_695039_-|CCA-tRNA-nucleotidyltransferase
MFELGKELKELFDIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALANESKELLLKHHFRVLETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSAHLTDDLKRRDFSMNAIAYSPTKGIIDPFKGQNAIENQVIECVGEARLRFFEDALRILRALRFSATLGFKIIASTKRAVFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKEYQEILELVTQEKIENIENLGFLKKAPFNLELRLLGFFKHQKSLENLRYPKKTCVLFLKAKECHKAFLNTHNKTELKFLLKNYDLEPFNLALDFYALKNPKHALKIKGLLKEIFNANEPFKKEHLALKGGALQSLGYKHQQIGEILNACLDLVIANPKNNALKWLIKWVKDHYLPNDAINFVPILFKAQELYSQAENPL
>NZ_CP011485.1|WP_064437625.1|691594_692914_-|glutamate--tRNA-ligase
MLRFAPSPTGDMHIGNLRAAIFNYIVAKQQHKPFLIRIEDTDKERNIEGKDQEILEILKLMGISWDKLVYQSHNVDYHREMAEKLLKENKAFYCYASAEFLEREKEKAKNEKRPFRYLDEWAALEKDKCYAPVVRLKAPNHVVSFNDTIKKEVKFEPDELDSFVLLRKDKSPTYNFACACDDLLYEISLIIRGEDHVSNTPKQILIQQALGSNNPIVYAHLPIILDETSGKKMSKRDEASSVKWLLNQGFLPVAIANYLITIGNKVPKEVFSLDEAIEWFDLENLSNSPAHFNLKYLKHLNHEHLKLLDDEKLLELTLIKDKNLLGLLRLFIEECGTLLELKEKISLFLEPKDIVKTYENEDFKERCLVLFNALKSMDFQAYKDFESFKKEAMRLSQLKGKDFFKPLRILLTGNSHGVELPLIFPYIQSHYQEVLRLKA
>NZ_CP011485.1|WP_064437624.1|691304_691598_-|YggT-family-protein
MIFSTLLNAIAVILSSLITIYMWVVIIYSLISFVQPNPNNPIMQILARLCEPVFYFLRSRFKLVFNGLDFAPLVVVIVLKFLDLTLIQWLFMLAKNL
>NZ_CP011485.1|WP_064437623.1|689613_691296_-|lytic-transglycosylase-domain-containing-protein
MRFFTLFFIGMLGVGFSQTEFNLKDLEKKPAGIVRDYYLWRYISDKKTSLENAKKAYELTQNKNNALQKAMQEKGSDNSEKSPDVKLPEDIYCKQTALESMLEEADTFQASCIAIALKSKIRDFDKIPLQTLKPLQIKIKEAYPVLYEELEILQSKNVNASLFKANAQVFSALFNHLSYEKKLQIFEKHIPIKELNRLLDEDYPAFNRLIYQVILDPKLDHFKDALTKSNATHSNAQTFFILGINEILRKKPSKALKYFERSEAVVKDDDFSKDRAVFWQYLVSKKKKVLERLSQSPALNLYSLYASRKLQTTPSYRIISHLQNLSQEDPPFNTYDPFSWQIFKEKTLSLKDEGAFNAMLKSLYYEKSAPELTYLLSQRNKDKIYYYLSPYEGIIEWQSVDEKAMAYAIARQESFLLPALISRSFALGLMQIMPFNVGPFAKKLGMDNVDLNDMFNPNIALKFGNYYLNHLKKEFNHPLFVAYAYNAGPGFLRRWLESSKRFKEKNHFEPWLSMELMPYSETRLYGFRVMLNYLIYQEIFGNFIPVDAFLEQTLNSKDKP
>NZ_CP011485.1|WP_064437622.1|688795_689617_-|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MIKKCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGTNKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIGNEPFAVILADDLCISHDCPSVLKQMTSLYQKYQCSIVAIEEVALEEVSKYGVIKGELLEEGVYEIKDMVEKPSQEDAPSNLAVIGRYILTPDIFEILSETKPGKNNEIQITDALLTQAKRKRIIAYQFKGKRYDCGSVEGYIEASNAYYKKRL
>NZ_CP011485.1|WP_064437621.1|688376_688784_-|hypothetical-protein
MGNLTYYACMYLILFVCLLPVLLVGFVWRLSRPPLKQNTPNKSLSLEDLSEQIKNLKSAPALEKLKNSFNERFKICPKDKEALWLETIQNLVASEFFELEDAINFGQELENANPNHAQKIANATGLALKNKKEKG
>NZ_CP011485.1|WP_064437620.1|687105_688374_-|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MDFLEIVGQVPLKGGVEISGAKNSALPILAATLLSQQEVKIKSLPQVVDIKAMALLLQNLGAELEWLNPNTLQLSAKSLRHTEATYDLVRKMRASILVLGPLLARFKECLVSLPGGCAIGARPVDLHLKAMQQLGAEITIEQGYIHAKAPKGLKGNDILFDKISVTGTENALMAASLAKGITRIINAAKEPEVAQLCAFLQSGGVEIEGVGSSELKIRGVENDALNLKDIQIIPDRIEAGTYLCVGAITNSQLKINRIIPNHLQAITDKLIEIGFSLDIQENSIEIYPAKKRQAFEITTKEYPGFPTDMQAQFMALATQCLGTSVIEETLFENRFMHASELQRLGANISLKTNVATISGSTELTGSDVMATDLRASSALILAALVAKGVSRVHRIYHLDRGYERLEDKINALGAKVARLKEK
>NZ_CP011485.1|WP_064437619.1|685641_687048_-|aspartate-ammonia-lyase
MRIEHDFIGQMEISDEVYYGIQTLRASENFFITNDKLCSYPVFIKSFAQVKKAAALANAQLGLIDEKLKIAICHACDLLIDGKYHDQFIVDMIQGGAGTSTNMNMNEVIANLALEYMGHKKGEYQFCHPNDHVNRSQSTNDAYPSALKIAIYERLSNLVAPMKALRDAFAQKAKEFAHVIKMGRTQLQDAVPMTLGQEFETYALMVDRDIEQVLDARNWVRELNLGGTAIGTGINSHPDYSSLIEKKIQEVTGRPFVMANNLIEATQSTGAYVQVSGVLKRIAVKLSKVCNDLRLLSSGPRAGLNEINLPKMQPGSSIMPGKVNPVIPEVVNQVCFAVIGNDLSVALAAEGGQLQLNVFEPVIAYKLFHSFVILGRAIETLTTKCVEGITANEKICHDYVFNSIGIVTALNPHIGYEKSAMIAKEALKSDRSIYDIALEKKILTKEQLDDIFKPENMLSPHAFKKHKD
>NZ_CP011485.1|WP_064437630.1|697443_698982_-|hypothetical-protein
MAFVFLFKCVNEETSLNFTPLLERMAFNLQARFYSVYKDNTTSFYLQASAETTLEFAQKLSEILPFSLDFSFLSLKEITEPLDEDLFQTTSLSKPLFMNAKEHQDFLDKNSSWYANAFYFVKNTAFKGAIIHSPKELIDCLTRLKDMLKTQDFIPINTSRGALSLSLKKPSLSVIFSDLSSVLTCTKLPLEDAKYLASLEKPSIKASLKSVFKDTFKNDEIIAQLPFDPILDLLCHILQDEGVEFVFIHANNPQEALLRYEALFKTPNRLITPTKKFVLENNLSAIAFKDELEFLSKTPNSIVLYFSFKRPTRLLLHANGSLKTLLSVKFDFNQSFDLLKQDEKASRMLKNYEAKFPNFYARFLELSKYQLGGANLLDFFQILGFVLGYSEDFYTQSVISLAKECLRPKGPRIDYKILKDDSFKMALNFSKIMHSAMSFRLAGVENEILSLGILDSLAEFLGNFIWDNAQNFSVQEVTIAGDFFGEKVFLDLFVQYFPKTLTLKTHAFLDYE
>NZ_CP011485.1|WP_064437631.1|698983_699520_-|hydrogenase-biosynthesis-protein-HydD
MSQKILILGIGNILFGDEGIGVHLAHYLKRNFSFFPSVDIVDGGTMAQQLIPLITSYEKVLILDCVSAEGVEIGSVYAFDFKDAPKEITWAGSAHEVEMLHTLRLAEFLGDLPKTFIVGLVPFVIGSETTFKLSSEMLNALETALKAIETRLNAWGVEMQRIDHIALDRIAELSYKGF
>NZ_CP011485.1|WP_064437632.1|699516_700191_-|Ni/Fe-hydrogenase,-b-type-cytochrome-subunit
MDKMNKVVLHKEYSGFVRFFHWVRALSIFLLIATGFYIAYPFLQPNSSFYKGVYLLQAYVRSFHVMFGFLLISALIFRTYLFFTKESALERKSFSQLLSPKAWIDQMKAYFLISGKPHTKGAYNPIQLVAYFTLIVLIVLMSLSGIVLYYNVYHAGLGAFLASAFKWFEALCGGLANVRFIHHLATWGFILFVPVHVYMVFFHSIRYESSGADSMINGYGYTKE
>NZ_CP011485.1|WP_064437633.1|700203_701940_-|nickel-dependent-hydrogenase-large-subunit
MSKKIVVDPITRIEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKAGITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLHGLDWCDIMSALKADPIQAAKLSFKYSPYPINTGAPELKAVQKRLSDFAKSGSLGPFSNGYYGHKTYRLSPEQNLIVLSHYLKLLEIQREAAKMTAIFGAKQPHPQSLTVGGVTSVMDILDPTRLAEWKSKFEVVAHFINHAYYPDLVMAGEMFANEPSVIKGCGLRNFIAYEEVLLGRDKYLLSSGVVLDGDISKLHPIDESLIKEEVTHSWYQYEDTKEVQLHPYDGQTNPHYTGLKDGESVGLENKIIPTKVLDTKDKYSWIKSPRYDSKPMEVGPLSSVVVGLAAKNPYVTEVATKFLKDTKLPLEALFSTLGRTAARCIEAKTIADNGLLAFDALVENLKSDQSTCAPYYIDKNQEYKGRYIGQVPRGMLSHWVRIKNGVVENYQAVVPSTWNAGPRDSKNQRGAYEMSLIGTKIADLTQPLEIIRTIHSFDPCIACSVHVMDFKGQSLNEFKVEPNFAKF
>NZ_CP011485.1|WP_064437634.1|701949_703110_-|hydrogenase-1-small-subunit
MFYDEKKTYQKIEERLDIVSSFNAHNEHKNLQDEFKGAGISRRDLLKWAGMMSATLALPASFAPLTLKAVEVANRLPVIWLHMAECTGCSESLLRSADPTIDSIIFDYINLEYHETIMVGSGFQAEKSLHDAIEKHKNNYILMVEGGIPQGTEYFLTQGPNAETGAEECRKAAKYAAAIFAIGTCSSFGGVQAAYPNPSNAQPLHKIIDKPVINVPGCPPSEKNIVGNVLYYLMFGALPKLDAYNRPAWAYGNRIHDLCERRGHFDAGEFVEHFGDENAKRGFCLYKMGCKGPYTFNNCSKLRFNSHTSWPIGAGHGCIGCSEPNFWDTMSPFEEPLANRSIKTAFDGLGADKVADKVGTTLLSATAIGIVAHALLSKAIKNKDNE
>NZ_CP011485.1|WP_064437635.1|703269_703854_+|NAD(P)H-dependent-oxidoreductase
MKKVLIINGAKAFGHSGGKLNETLTDHAKKTLESLGLEVDTTIVDKGYEMSQEVEKVFSADATIWQMPGWWMGEPWIVKKYIDEVFSAGHGKLYANDGRSSQNPTKNYGKGGLMQGKKYMLSLTWNAPIEAFNDPNEFFEGVGVDVVYLHLHKAFQFLGLSALPTFICNDVMKNPQVEQYLNSLTTHLRQAFGK
>NZ_CP011485.1|WP_064437636.1|703915_705976_-|DUF262-domain-containing-protein
MKVTQSTINDFFALTGTIFSIPVYQRNYTWEKENCEKLLQDIVGISQNKKTHFMGSITYILHLIDDEKSLRQLQEFVIIDGQQRITTIMLLLKAIETRIRNEEIKKEINNLLNLSGQRLRLKPIKSDREAFDLVMQNRSHEIQGVSHIRNNYRFFTKELDKYISQGYRIEEIYSAFLRLKIVAVGLELGEDDPQVVFESINATGVQLKGLDLIRNYLMMGENSEKQQHLYETYWVPLENWLLEKDLNDFIKTYLRIYFEDRFREQEREVYFTLKAHHRDHFSNDIQGLMSDMREYGRIYQIFLDRDCYSLERGDPYQLANLRLRIKDLTKIQFGVAKPFILRLARDFEEGKLDYENFHEILQILISYYVRRSVCGDPTAALNKALYSLYKQLENEFKNVSADALKRYLGRFVGQAAFPNDDRIKAAFAVRNAYSTKNVCKFILLEIEKLSNAEPPKEEDLQVEHFYPQNPTQEWRDRVGDYFTFEQDYLNNFGNLTLSGQNQKLSNKSYEEKIELMEQYSSLHLNDYFINNTHSWGIEEVRARSEYLADLFCQVGLFKDLPKEYRAREINKTLDDDLTFHKLQSVKLPNQKREITRNAKELASAVIDYLLENAREAFESYTDDEHPSYIYWNKAKAESRDRDGTRVVPFEKGGFYFVSNASLRDLGNNLRDLILGCDLNPRDFIVE
>NZ_CP011485.1|WP_064437637.1|706165_707224_-|sel1-repeat-family-protein
MLKKSLLLLVFLVLQLSGAEENNQVSKNTPPELNPANAKGAPNPNTQITPKNDNSNLFDKLGSPENAQTELSAGIELAKKGDYQGAFRLFSQSCDNGNAAGCFAVGAMYANGVGIQTNRLKAARYYEMGCSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAMGYYKFSCDNGNDMGCYNLGLMSNVNNIYGIDKAELSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRNYGNFKEHLLRVNPNYGRLFMPYHSYDIP
>NZ_CP011485.1|WP_064437638.1|707235_708441_-|2,3,4,5-tetrahydropyridine-2,6-carboxylate-N-succinyltransferase
MINKFKNFVSNYQQSNHYKEPLGFGIARVDIAPISKKILCATYPVLNWKDENLGSYAVFCNAFSKEKILKESASECVIEIDESFVLKALDFYTPFLNEAYSNKMAHKNIQVVLELLRALEENRLKNSDGESLYRLVILYEDKPCESVESAYMKLLALSLGKAPLRSLNLEGIFNQLSNAAWSGNKPYELEWLRMNEVALKMRGNFPSIDFIDKFPRYLMQLIPEFDNIRLLDSAKTRFGAYLGTGGYTQMPGASYVNFNAGAMGVCMNEGRISSSVVVGAGTDIGGGASVLGVLSGGNNNPISIGKNCLLGANSVTGISLGDGCIVDAGVAILAGSVIEIEENEFKKLLEVNSNLEKHANNLYKGKELSGKNGVHFRSNSQNGKLIAFRSVKKIELNQNLH
>NZ_CP011485.1|WP_064437639.1|708443_709523_-|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MLENRVKTKQIFIGSVAIGGDAPISTQSMTFSKTADIESTKNQIDRLKLAGADLVRVAVSNEKDALALKELKKVSPLPLIADIHFHYKFALIAAQSVDAIRINPGNIGSKDKIKAVVDACKEKNIPIRIGVNAGSLEKQFDQKYGPTPKGMVESALYNAKLLEDLDFTDFKISLKASDVMRTMQAYRMLRPLVVYPFHLGVTEAGNLFSSSIKSAMALGGLLMEGIGDTMRVSITGELENEIKVARAILRHSGRLKEGINLISCPTCGRIEANLVDMASKVEKRLSHIKTPLDISVMGCVVNALGEAKHADMAIAFGNRSGLIIKEGKVIHKLAEKDLFETFVIEVENLAKEREKSLKD

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Crispr_ID: NZ_CP011485_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011485_5

1337190-1337269

Orphan

Consensus_repeat	Method
AGATTTGTTCTAATAACAATTCT	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP011485_5

>merge|NZ_CP011485|5|1337190-1337269|CRISPRCasFinder
AGATTTGTTCTAATAACAATTCTTTACCATGCTCTAAAAGGTTTTTAGCTTCTTGTGAGATTTGTTCTAATAACAATTCT

>NZ_CP011485|5|5|1337190-1337269|CRISPRCasFinder
AGATTTGTTCTAATAACAATTCT	TTACCATGCTCTAAAAGGTTTTTAGCTTCTTGTG
AGATTTGTTCTAATAACAATTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011485.1\|WP_064438249.1\|1334449_1335766_-\|sodium/proton-antiporter-NhaA	unknown	unknown	gnl\|CDD\|184858
NZ_CP011485.1\|WP_064438083.1\|1345115_1345988_-\|class-1-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|223236
NZ_CP011485.1\|WP_064438070.1\|1325229_1326165_-\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_CP011485.1\|WP_000539103.1\|1347999_1348296_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011485.1\|WP_064438084.1\|1346058_1346712_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|273475
NZ_CP011485.1\|WP_064438080.1\|1340859_1341960_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011485.1\|WP_064438081.1\|1341949_1343206_+\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|223348
NZ_CP011485.1\|WP_064438072.1\|1327099_1328269_-\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|223362
NZ_CP011485.1\|WP_064438077.1\|1334108_1334402_-\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|235518
NZ_CP011485.1\|WP_000258279.1\|1338942_1339737_+\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|235396
NZ_CP011485.1\|WP_064438074.1\|1328773_1331194_-\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_CP011485.1\|WP_000983470.1\|1344912_1345119_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011485.1\|WP_064438079.1\|1339736_1340804_+\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491
NZ_CP011485.1\|WP_064438085.1\|1346689_1347553_+\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236281
NZ_CP011485.1\|WP_064438071.1\|1326173_1327100_-\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_CP011485.1\|WP_064438082.1\|1343278_1344010_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011485.1\|WP_064438073.1\|1328258_1328777_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011485.1\|WP_064438075.1\|1331551_1332523_-\|protein-translocase-subunit-SecF	unknown	unknown	gnl\|CDD\|237275
NZ_CP011485.1\|WP_064438076.1\|1332531_1334109_-\|protein-translocase-subunit-SecD	unknown	unknown	gnl\|CDD\|235615
NZ_CP011485.1\|WP_000383761.1\|1331203_1331542_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP011485.1\|WP_064438249.1\|1334449_1335766_-\|sodium/proton-antiporter-NhaA	gnl\|CDD\|184858	PRK14856, nhaA, sodium/proton antiporter NhaA.	0
NZ_CP011485.1\|WP_064438070.1\|1325229_1326165_-\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	2.20172e-47
NZ_CP011485.1\|WP_064438084.1\|1346058_1346712_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|273475	TIGR01163, Ribulose-phosphate_3-epimerase, ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. [Energy metabolism, Pentose phosphate pathway].	1.4282e-113
NZ_CP011485.1\|WP_064438081.1\|1341949_1343206_+\|DNA-cytosine-methyltransferase	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	5.46942e-53
NZ_CP011485.1\|WP_064438083.1\|1345115_1345988_-\|class-1-fructose-bisphosphatase	gnl\|CDD\|223236	COG0158, Fbp, Fructose-1,6-bisphosphatase [Carbohydrate transport and metabolism].	2.00418e-110
NZ_CP011485.1\|WP_064438072.1\|1327099_1328269_-\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	gnl\|CDD\|223362	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].	3.31217e-119
NZ_CP011485.1\|WP_064438077.1\|1334108_1334402_-\|preprotein-translocase-subunit-YajC	gnl\|CDD\|235518	PRK05585, yajC, preprotein translocase subunit YajC; Validated.	2.70703e-38
NZ_CP011485.1\|WP_000258279.1\|1338942_1339737_+\|30S-ribosomal-protein-S2	gnl\|CDD\|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	7.66705e-155
NZ_CP011485.1\|WP_064438074.1\|1328773_1331194_-\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP011485.1\|WP_064438079.1\|1339736_1340804_+\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	8.99757e-124
NZ_CP011485.1\|WP_064438071.1\|1326173_1327100_-\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	3.3109e-36
NZ_CP011485.1\|WP_064438085.1\|1346689_1347553_+\|3'-5'-exonuclease	gnl\|CDD\|236281	PRK08517, PRK08517, 3'-5' exonuclease.	5.45404e-137
NZ_CP011485.1\|WP_064438075.1\|1331551_1332523_-\|protein-translocase-subunit-SecF	gnl\|CDD\|237275	PRK13022, secF, protein translocase subunit SecF.	8.20231e-113
NZ_CP011485.1\|WP_064438076.1\|1332531_1334109_-\|protein-translocase-subunit-SecD	gnl\|CDD\|235615	PRK05812, secD, preprotein translocase subunit SecD; Reviewed.	0

>NZ_CP011485.1|WP_064438249.1|1334449_1335766_-|sodium/proton-antiporter-NhaA
MNVKKTENAISVTLKNFIKSESFGGIFLFLNAVLAMVVANSFLKESYFALWHTPFGFQIGDFFIGFSLHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAAIGGMIAPGLIYFFLNANTPSQHGFGIPMATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYTTNLKFAWLLGALGVVLILAVLNRLNTRSLVPYLLLGVLLWFCVHESGIHATIAAVILAFMIPVKIPKDSKNIELLELGKRYAETSSGALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLGVDKVLLGVILGLCLGKPLGIFFITFISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFTSEHKDAMEVAKIAILLGSLISGIIGALYLFALDKKAALKK
>NZ_CP011485.1|WP_064438077.1|1334108_1334402_-|preprotein-translocase-subunit-YajC
MGQIKDILTTLLPLVVLLLIFYFLIVRPQRQQQKKHKEMIEGLTKGDKIVTQGGLIVEVLKAEANFFSVKLNDDTTAKLSKNYIAFKLDEETTPNSN
>NZ_CP011485.1|WP_064438076.1|1332531_1334109_-|protein-translocase-subunit-SecD
MKFFNARLIVFICALLLGVGFSVPSLLETKGPKITLGLDLRGGLNMLLGVQTDEALRNKYLSLASALEYNAKKQNILLKDIKSSLEGISFELLDEDEAKQLDALLLELQGHSQFEIKKEAGFYSVKLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPVVIQQGREEISVQLPGIKTLEEERRAKELISRSAHLQMMAVDEEHNKDAMKMTDLEAQKLGSVLLSDVEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGANVGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDLAIALRSGAMSAPIQVLEKRIIGPSLGKDSIKTSIIALVGGFILVMGFMVLYYSMAGVIACMALVVNLFLIVAVMAIFGATLTLPGMAGIVLTVGIAVDANIIINERIREVLRENEGIAKAIHLGYINASRAIFDSNITSLIASVLLYAYGTGAIKGFALTTGIGILASIITAIVGTQGIYQALLPKLTQTKSLYFWFGVNKRA
>NZ_CP011485.1|WP_064438075.1|1331551_1332523_-|protein-translocase-subunit-SecF
MELFKQTRILSFMRYSNYGVIVSAILVLLALGLLFFKGFSLGIDFAGGSLVQVRYTQNAPIKEVRDLFEKEARFKGVQVSEFGSKEEILIKFPFVETAENEDLNAIVANILKPSGDFEIRKFDTVGPRVGSELKEKGVLSLILALMAIMVYVSFRYEWRFALASVIALVHDVILVASSVIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEMLSQKTKNAIQAINEAISSTLTRTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLGFDMGKYYENEARKIKKAQEKEKMRRLYEGGQV
>NZ_CP011485.1|WP_000383761.1|1331203_1331542_-|hypothetical-protein
MDWGRVIHVLFSLISLTTIAGFLYEPNTVVLFVALALNLISVTLKIGVCKRFASELLASSLATVLHLIPAFVFLQILNNLVTAYMLMIGALISNAFSLIFLLIESVVTSETD
>NZ_CP011485.1|WP_064438074.1|1328773_1331194_-|leucine--tRNA-ligase
MDFINIEKKWQEFWRQNESFEPKDDFNLPKKYILSMLPYPSGEIHMGHVRNYTIGDVLARYYRLHHYNVLHPMGFDSFGMPAENAAIKHGVHPKTWTYENIENMQKEFEALGFSFSKNREFATSDPDYTKFEQQFFIDLWEKGLIYRKKAMLNWCPNDKTVLANEQVIDGRCWRCDTEVIQKELYQYYLKITNYAEELLKDLETLENDWPSQVLTMQKNWIGKSSGLQFGFKIADECLKFCNGIQEIEVFTTRADTIYGVTYIAIAPEHPLVEHAIKRVSQEVSKIIKAILNTTQRERALEKKGAFLGIYAIHPLTKQKIPVWVANFALANYGSGALMGVPACDERDFEFANLYHIPIKVITQSSQNLPHTKEEVLKNSGEWSDLSSSAAREKIIAYFEKENLGKRVINYRLQDWGVSRQRYWGAPIPMIHCKNCGIVPETRLPVTLPEDIVIDGEGNPLEKHASWKFTQCPKCHKNALRETDTMDTFIQSSWYFLRYTTPKNQRENQAFDQNYLKYFMPVDTYIGGIEHAILHLLYARFFTKALRDLGYLNLDEPFKQLITQGMVLKDGAKMSKSKGNVVSPKEILKKYGADAARLFILFAAPPAKELEWNDSALEGAHRFIKRLYDKANAINPTTYKPEFKEVSLNEAQKLGRKKVYEALKKSHEIFNKAESAYAFNTLIASCMEALNALNAQNNERILCEGYFVLLQILEPIIPHTAWELSERLFKRENFKPIAIDEDALMEDFMTLGLTINGKRRSELKVNINASKEEIIVLAKKELEKYLENASVKKEIYVPNKLVNFVIA
>NZ_CP011485.1|WP_064438073.1|1328258_1328777_-|hypothetical-protein
MIFRALLFFILLLLFKGCGYKPIATYAQNALGDSIYVKLIVNLPNPENSVEFKDLMNRLVVQRFQSRLASEKDADSIIIIEITNVTDTSITQNKEGFTTFYRATVFVNYTYDNKRGTQKTFQNSGYYNYAVNLQDPLNTYQNRYYAINQAVEQTLTKFVAQIAYEGKFNNEK
>NZ_CP011485.1|WP_064438072.1|1327099_1328269_-|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase
MKNSHGLSAFLETKPKEYHKFDPSRFIQIYKDFKNAFFEIQAKVIHVVGTNGKGSTGRFLTLLLADQNLKVLHFTSPHVFEFRERFFLNGSVVEESVLENAHQQLQPHAFSNACSYFEYATLLAVVLAKDCDYLVLEAGLGGEFDSTNALEKTLSIFTPIDYDHKEFLGDSLESIAQTKLKAMGSLSIIAPQQELVLNAAQKIAKEKHAKLILVKNEISKGVKDYIERHHLARFLAMNLEVALKAFETLMPCNRQEVLKNLKPLNLIGRCELLSPNILIDVGHNPHSAKALKEEIKRVFNAKIVLIYNCYQDKDAFLVLEILKPVIKKVLILELHEERVIKLEKLKGILETLGLEYALFEDLKENENYLVYGSFLVANAFYRRYQKKRD
>NZ_CP011485.1|WP_064438071.1|1326173_1327100_-|M23-family-metallopeptidase
MPQNQLMITIIDESGSKQLKFSKNLKRNLIISVVIFLLIVGLGVGFLKFLIAKMDTMTAERNAVLRDFRDLYQKNYTLTKEIKNKREELFIVGQKIRTIESLIEVKRGANGGVHLYDEVDLENLNLAQKHLALMLIPNGMPLKTYSAIKPTKERNHPIKKIKGVESGIDFIAPLNTPVYASADGIVDFVKTRSNAGYGNLVRIEHAFGFSSIYTHLDHVNVQPKSFVQKGQLIGYSGKSGNSGGEKLHYEVRFLGKILDAQKFLAWDLDHFQSALEENKFIEWKNLFWVLEDIVQLQEHVDKDALISQ
>NZ_CP011485.1|WP_064438070.1|1325229_1326165_-|M23-family-metallopeptidase
MFLDRRLIVMITDSKGSRYINVHILFRQIGLYALLMVAGSLLFLGISLLVLNKEIKNIEKQHALITKEFEKKKETNEKLSLQMDEFLDDLQLSGERINDLEEVVGVNRPEEKEEGNFSSRLDVAGITGLQKSFIMRLIPNDYPLESYRRVSAAFNKRIHPILHVLHNHTGLDLSTAINTPVYASASGVVGLASKGWNGGYGNLIKIFHPFGFKTYYAHLNKIIVKTGEFVKKGQLIGYSGNTGMSTGPHLHYEVRFLDQPINPMSFTKWNMKNFEEVFNKERSIRWQSLITIINQLMQKQDQRLSSLKAQK
>NZ_CP011485.1|WP_000258279.1|1338942_1339737_+|30S-ribosomal-protein-S2
MVTMKDLLECGVHFGHQTRRWNPKTKKFIFGVRKNIHIIDLQKTLRYFRYTYNIVRDASAQGKSIMFVGTKKQANETLKEFAESIQVPYVNYRWLGGMLTNFSTIRKSVRKLEIIEEMENSGQIDLLTKKEKLMILRKKEKLDKYLGGVRHMKKIPDMIFVIDVAKEKIAVAEARKLHIPIVAPLDTNCDPDLVDYPIPGNDDAIRSIRLFCKEMSEAILEGRELMQEEIVHADENSEEIEYVSNEEKEEMLAEIQKEITQGAE
>NZ_CP011485.1|WP_064438079.1|1339736_1340804_+|elongation-factor-Ts
MSGISAQLVKKLRDLTDAGMMDCKKALVEVAGDLQKAIDFLREKGLSKAAKKADRIAAEGVVALEVAPDFKSAMMVEINSETDFVAKNEGFKELVKKTLETIKAHNIHATEELLKSPLDNKPFEEYLHSQIAVIGENILVRKIAHLKASSSHIVNGYAHSNARVGVLIGIKYNHEKNAPKAVELARNIAMHAAAMKPQALDSKDFSLDFVKKETLALIAEIEKDNEEAKRLGKPLKNIPTFGSRIELSDEVLACQKKAFEDELKAQGKPEKIWDKIVPGKMERFIADNTLIDQRLTLLGQFYVMDDKKTIAQVVADCSKEWGDDLQITEYVRFELGEGIEKKAENFAEEVALQMK
>NZ_CP011485.1|WP_064438080.1|1340859_1341960_+|hypothetical-protein
MPYRLEKHFQDLIASNNNIQKDICSILEMDYKDFKLLREDTYINGITADFTLFEKNKVRAIIECKGGAIGVSEYVRGIGQIFQYEYFFENHLSLKNYEFCQNFNSVLIFPESVLKNNDFNVGLFKYPKSKKILEINSHNLAVRPINDNELEKLRETKHRDFKVISPYYVRDIRFFEVYFLLQVLAIFKLKNKLAHRKNIEETILKKTHSLNNGNWRNVFITLATLGLIDSKNYPTSIGLDFVGMSYSEFLVMVFESYIKPYYIEIFKLVENDTLNLKNNEIAERIKMHFNNHEVLFLTESNSRYISSWLNIAKDDFAFFSFTKRLVQRQLIFNPFTSNKENFIKHIEKYSLYNKYKERYEEILNGI
>NZ_CP011485.1|WP_064438081.1|1341949_1343206_+|DNA-cytosine-methyltransferase
MAYSVCEFFVGAGGSHLGFMQQGFKTLYVNDIDKDALKTLLYNNKALKNAIIDQTSITEIDPKNLQARIQQEVDVIFAGIVCKSFSLAGERSPNDKRNYLYRYYLEIVKTLKPKISIIENVKGMLNAKILAQNSDPKILQEVDILYQELENYKGKKAELRKKNAITKEFENYGLNLRQKKQALQKKLNHLMHGVVDDILKIYEELGYRVKFKVLNSAWYGSATKRERLIIVAIRNDLPFDFTFPKPTHLSDEINTKLDFKDLPASFKKPFLIRDAFDLIDYSNSDDTDNLPMQHSPKTIERFKYIQEGKNIQECIESLPKHLQISKFYSRGNTMRLKMDALSPTLVPGHSNFPLHPTEHRSITIREAATITGFPVSYKFFGSHTKRCEQVGNAVPIALSSAIAKEVKRFLDSLKSKTL
>NZ_CP011485.1|WP_064438082.1|1343278_1344010_-|hypothetical-protein
MLEKVFQEMTHKRKFFASSSTGEQFENKFRNELKKHFSEINGDLTEELSHIEEKPNKEIKTTFSQLKKQVLEKNHPDTLKNPFSNLTSHFLYQPFGSQNYPDFLVFIFDYVVGIEIKFSKNDKGEKNLQTSRPMWNSNLPKPNAIYVYGVANINTTFFKGSDILSYETREILLKYFDTLDKDEESLKNALKDLENPFGFAPYIRKAYEHKKEFSNHHQIESFFSHNHILREQNVLEFLKTLTH
>NZ_CP011485.1|WP_000983470.1|1344912_1345119_-|hypothetical-protein
MMQNSAKKLEYEERFNDALLKLQACQEEKQVASCLKCEKVLKCEIRNSYVNAAYESMSLGEAGGFDFN
>NZ_CP011485.1|WP_064438083.1|1345115_1345988_-|class-1-fructose-bisphosphatase
MDYKHFKGTHANIVIEIISLLEKGVKKAQEILEKPDAGSYTKLENSSGDTPIKADLALDKFLEENFLSLENVKSVFSEEKETPVTKENGSYLIAYDPLDGSSVMEANFLVGTIIGVYEKDYKAQNLVASLYVVFGHKIELMVALEEVYRYAFYQNKFHFIETIILEKKGKIIASGGNQKDFSLGLKKALEGFFAQNYRLRYSGSMVADVHHVLIKKGGMFSYPQKKLRKLFEVFPLALMVEKAKGEAFYFDKGVKKRLLEQSVESYHEKSECYLTSQHEAQILEKYLKGE
>NZ_CP011485.1|WP_064438084.1|1346058_1346712_+|ribulose-phosphate-3-epimerase
MKVAPSLLSADFMHLAKEIESVSNADFLHVDVMDGHYVPNLTMGPVVLENVIQISKVPLDVHLMVENASFFVGLFAPLNPQIISIHAENEKHPHRVLQLIKNAGITPGVVLNPHTHEESIKYLLESVGLVLLMSVNPGFGGQKFLDLVLEKCLKVKELIKRYNPSCLLEVDGGVNDKNIFELQQMGVDVVVSGSYIFKSKDRKLAIEGLQNVRQSLA
>NZ_CP011485.1|WP_064438085.1|1346689_1347553_+|3'-5'-exonuclease
MSDNLLHKDIQALIARLKHQDLSLGVLEKSLSRLIYDEINLEYLKACGLNFVETSENLITLKNLKTPLKDEVFSFIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGIAYEDTLNAPSAHEALQELRLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALASYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPRARYQETPSPFSLFERTKGLLNIIKATS
>NZ_CP011485.1|WP_000539103.1|1347999_1348296_-|hypothetical-protein
MGVSALGNVTYINQNAPLNSAIQQGARSDMLDLAQSFQSKLELAQETRALENMQAISDKDPKEGSKNRYQNSQRAKAFGLEEEEIELWHEEHLLDIVG

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage